F358728

General Info

Members Datasets Scaffolds Average Seq Length
247 163 494 455

Family's Representative Sequence

Representative Sequence 3300005330|Ga0070690_100000219|Ga0070690_10000021911
Length 469
Sequence VTVPTASLSDLGRIVIVEDDPELLEQLTWALKGKFAVSAARDATHGKALCESDPDLYLFDMRLPPSGQVQEGLDLLKHVRRRDPEATVVMMSGEGERRDALRAVALGAFDFFQKPIDTAELMVILNRALERRRLLSENRELRRTAAEPEPAGGIVGRSAPMQRLLRDLERVAGSDATVLIVGESGTGKELAARAIHARSPRRDRPFVAVNAAALPESLAEAELFGHERGAFTGAVGSRPGRFELAEGGTLFLDEIGTLSAAVQSKLLRVLESREIERLGGRRSIPVDFRLVSATNEDLEARVAAGTFREDLYYRIHTVPIAIPPLRERAGDLPVLAEYFIELFGKRHGKPGLRLSPAALSRLEAHPWRGNVRELQHVIEMLVLFSDAEVIDEADLPRALRRPTPGVSPASGPAASASTSPRGFAAAVEDFERTLLKDAIAAAGGVKAEAARRLGLDANQIKYLCRKYGL

Samples

Sample ID Description Type Environment
1 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
24 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
25 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
26 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
27 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
28 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
29 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
39 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
40 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
41 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
42 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
43 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
44 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
45 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
46 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
49 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
52 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
53 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
54 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
55 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
57 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
60 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
67 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
68 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
69 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
70 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
96 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
100 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
101 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
102 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
103 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
104 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
105 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
106 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
107 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
108 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
109 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
110 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
111 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
112 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
113 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
114 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
115 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
116 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
117 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
118 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
119 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
120 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
121 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
122 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
123 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
124 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
125 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
126 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
127 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
128 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
129 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
130 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
131 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
132 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
133 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
134 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
135 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
136 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
137 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
138 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
139 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
140 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
141 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
142 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
143 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
144 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
145 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
146 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
149 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
150 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
151 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
152 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
153 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
154 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
155 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
156 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
157 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
158 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
159 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
160 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
161 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
162 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified
163 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.57
Metatranscriptomes 0
Isolates 2.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.4
Nodule 0.81
Rhizoplane 1.62
Rhizosphere 89.47
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070690_100000219 3300005330 Bacteria 29859
2 rootH2_10061105 3300003320 Bacteria 3666
3 rootH1_10008777 3300003323 Bacteria 114505
4 Ga0070658_10023570 3300005327 Bacteria 4939
5 Ga0070670_100000015 3300005331 Bacteria 228819
6 Ga0070670_100005542 3300005331 Bacteria 10648
7 Ga0068869_100170371 3300005334 Bacteria 1700
8 Ga0070666_10006635 3300005335 Bacteria 7117
9 Ga0070666_10013990 3300005335 Bacteria 5101
10 Ga0070666_10028476 3300005335 Bacteria 3666
11 Ga0070666_10093362 3300005335 Bacteria 2069
12 Ga0070660_100062495 3300005339 Bacteria 2893
13 Ga0070692_10002043 3300005345 Bacteria 7672
14 Ga0070669_100001929 3300005353 Bacteria 14963
15 Ga0070669_100067550 3300005353 Bacteria 2638
16 Ga0070675_100114701 3300005354 Bacteria 2283
17 Ga0070675_100126751 3300005354 Bacteria 2172
18 Ga0070671_100000013 3300005355 Bacteria 173287
19 Ga0070674_100066878 3300005356 Bacteria 2527
20 Ga0070688_100001685 3300005365 Bacteria 11039
21 Ga0070667_100000015 3300005367 Bacteria 238203
22 Ga0070667_100001693 3300005367 Bacteria 19716
23 Ga0070714_100012841 3300005435 Bacteria 6694
24 Ga0070710_10000897 3300005437 Bacteria 14244
25 Ga0070694_100056492 3300005444 Bacteria 2666
26 Ga0070708_100029848 3300005445 Bacteria 4707
27 Ga0070708_100057854 3300005445 Bacteria 3453
28 Ga0070708_100169718 3300005445 Bacteria 2036
29 Ga0070663_100010904 3300005455 Bacteria 5679
30 Ga0070678_100005896 3300005456 Bacteria 7126
31 Ga0068867_100166125 3300005459 Bacteria 1744
32 Ga0070685_10000116 3300005466 Bacteria 50879
33 Ga0070706_100008995 3300005467 Bacteria 9298
34 Ga0070707_100004019 3300005468 Bacteria 13837
35 Ga0070707_100106330 3300005468 Bacteria 2721
36 Ga0070698_100002318 3300005471 Bacteria 21057
37 Ga0070699_100169566 3300005518 Bacteria 1934
38 Ga0070697_100098513 3300005536 Bacteria 2426
39 Ga0070697_100123306 3300005536 Bacteria 2169
40 Ga0070672_100019437 3300005543 Bacteria 4930
41 Ga0070672_100047577 3300005543 Bacteria 3329
42 Ga0070696_100014149 3300005546 Bacteria 5355
43 Ga0070693_100011731 3300005547 Bacteria 4419
44 Ga0070665_100006002 3300005548 Bacteria 12424
45 Ga0070665_100027715 3300005548 Bacteria 5703
46 Ga0070704_100108449 3300005549 Bacteria 2108
47 Ga0068855_100260084 3300005563 Bacteria 1934
48 Ga0070664_100035179 3300005564 Bacteria 4204
49 Ga0070664_100112942 3300005564 Bacteria 2373
50 Ga0068856_100009736 3300005614 Bacteria 9335
51 Ga0068856_100067819 3300005614 Bacteria 3526
52 Ga0068859_100000339 3300005617 Bacteria 46761
53 Ga0068859_100087470 3300005617 Bacteria 3164
54 Ga0068859_100217889 3300005617 Bacteria 1996
55 Ga0068864_100000056 3300005618 Bacteria 127891
56 Ga0068864_100002617 3300005618 Bacteria 14862
57 Ga0068864_100003305 3300005618 Bacteria 13322
58 Ga0068861_100024896 3300005719 Bacteria 4334
59 Ga0068861_100037206 3300005719 Bacteria 3618
60 Ga0068863_100017388 3300005841 Bacteria 6894
61 Ga0068863_100051748 3300005841 Bacteria 3892
62 Ga0068863_100108571 3300005841 Bacteria 2641
63 Ga0068858_100000221 3300005842 Bacteria 61670
64 Ga0068858_100013383 3300005842 Bacteria 7742
65 Ga0068860_100002288 3300005843 Bacteria 20131
66 Ga0068860_100003304 3300005843 Bacteria 16592
67 Ga0068862_100004456 3300005844 Bacteria 11811
68 Ga0068862_100033084 3300005844 Bacteria 4367
69 Ga0068862_100074503 3300005844 Bacteria 2934
70 Ga0081455_10019589 3300005937 Bacteria 6395
71 Ga0070717_10023634 3300006028 Bacteria 4873
72 Ga0070712_100041194 3300006175 Bacteria 3170
73 Ga0075428_100095767 3300006844 Bacteria 3236
74 Ga0075433_10006334 3300006852 Bacteria 9355
75 Ga0075433_10213568 3300006852 Bacteria 1714
76 Ga0075434_100052893 3300006871 Bacteria 4035
77 Ga0097620_100000339 3300006931 Bacteria 46761
78 Ga0097620_100087469 3300006931 Bacteria 3164
79 Ga0097620_100217895 3300006931 Bacteria 1996
80 Ga0079104_1003797 3300006946 Bacteria 6792
81 Ga0075435_100065134 3300007076 Bacteria 2962
82 Ga0099795_10056884 3300007788 Bacteria 1440
83 Ga0105247_10037276 3300009101 Bacteria 2967
84 Ga0114129_10021217 3300009147 Bacteria 9224
85 Ga0114129_10041587 3300009147 Bacteria 6475
86 Ga0105248_10002759 3300009177 Bacteria 19510
87 Ga0105248_10114383 3300009177 Bacteria 3043
88 Ga0105248_10199220 3300009177 Bacteria 2256
89 Ga0105249_10001106 3300009553 Bacteria 23950
90 Ga0105249_10030593 3300009553 Bacteria 4868
91 Ga0157370_10045543 3300013104 Bacteria 4208
92 Ga0157374_10006434 3300013296 Bacteria 9974
93 Ga0157378_10005211 3300013297 Bacteria 11414
94 Ga0163162_10009267 3300013306 Bacteria 9575
95 Ga0163162_10066193 3300013306 Bacteria 3662
96 Ga0163162_10105921 3300013306 Bacteria 2906
97 Ga0157375_10001574 3300013308 Bacteria 19656
98 Ga0157375_10021472 3300013308 Bacteria 5921
99 Ga0157375_10024227 3300013308 Bacteria 5613
100 Ga0163163_10000158 3300014325 Bacteria 70435
101 Ga0163163_10102495 3300014325 Bacteria 2886
102 Ga0163163_10216834 3300014325 Bacteria 1963
103 Ga0157380_10017544 3300014326 Bacteria 5298
104 Ga0157380_10019843 3300014326 Bacteria 5016
105 Ga0157379_10006246 3300014968 Bacteria 10256
106 Ga0157379_10129804 3300014968 Bacteria 2268
107 Ga0157379_10208632 3300014968 Bacteria 1768
108 Ga0157376_10005114 3300014969 Bacteria 9144
109 Ga0157376_10039456 3300014969 Bacteria 3851
110 Ga0163161_10175741 3300017792 Bacteria 1639
111 Ga0213873_10004651 3300021358 Bacteria 2578
112 Ga0228598_1006528 3300024227 Bacteria 2412
113 Ga0207697_10022432 3300025315 Bacteria 2586
114 Ga0207710_10012515 3300025900 Bacteria 3570
115 Ga0207680_10000910 3300025903 Bacteria 13983
116 Ga0207680_10072460 3300025903 Bacteria 2139
117 Ga0207647_10065939 3300025904 Bacteria 2197
118 Ga0207684_10088628 3300025910 Bacteria 2636
119 Ga0207684_10098211 3300025910 Bacteria 2501
120 Ga0207693_10001207 3300025915 Bacteria 23033
121 Ga0207681_10002419 3300025923 Bacteria 11845
122 Ga0207681_10111716 3300025923 Bacteria 1989
123 Ga0207650_10000013 3300025925 Bacteria 409471
124 Ga0207644_10000106 3300025931 Bacteria 61480
125 Ga0207706_10023527 3300025933 Bacteria 5531
126 Ga0207706_10039779 3300025933 Bacteria 4169
127 Ga0207670_10073803 3300025936 Bacteria 2366
128 Ga0207691_10000738 3300025940 Bacteria 32273
129 Ga0207691_10006042 3300025940 Bacteria 11688
130 Ga0207691_10033109 3300025940 Bacteria 4813
131 Ga0207711_10000200 3300025941 Bacteria 63897
132 Ga0207711_10000303 3300025941 Bacteria 52820
133 Ga0207689_10001800 3300025942 Bacteria 20229
134 Ga0207689_10007399 3300025942 Bacteria 9629
135 Ga0207679_10010856 3300025945 Bacteria 5872
136 Ga0207679_10068544 3300025945 Bacteria 2666
137 Ga0207651_10048340 3300025960 Bacteria 2875
138 Ga0207658_10000005 3300025986 Bacteria 408341
139 Ga0207658_10002940 3300025986 Bacteria 12204
140 Ga0207658_10024954 3300025986 Bacteria 4183
141 Ga0207703_10001581 3300026035 Bacteria 20638
142 Ga0207703_10250353 3300026035 Bacteria 1596
143 Ga0207678_10003285 3300026067 Bacteria 14586
144 Ga0207702_10052249 3300026078 Bacteria 3457
145 Ga0207641_10004500 3300026088 Bacteria 12055
146 Ga0207641_10005135 3300026088 Bacteria 11212
147 Ga0207641_10010622 3300026088 Bacteria 7557
148 Ga0207641_10058510 3300026088 Bacteria 3280
149 Ga0207641_10065408 3300026088 Bacteria 3110
150 Ga0207648_10003629 3300026089 Bacteria 16138
151 Ga0207648_10170385 3300026089 Bacteria 1924
152 Ga0207676_10000010 3300026095 Bacteria 519402
153 Ga0207676_10133524 3300026095 Bacteria 2114
154 Ga0207675_100017353 3300026118 Bacteria 6719
155 Ga0207675_100027900 3300026118 Bacteria 5258
156 Ga0207675_100121724 3300026118 Bacteria 2470
157 Ga0207683_10081850 3300026121 Bacteria 2866
158 Ga0209281_1005614 3300027111 Bacteria 3444
159 Ga0268266_10020643 3300028379 Bacteria 5613
160 Ga0268266_10027015 3300028379 Bacteria 4883
161 Ga0268265_10000486 3300028380 Bacteria 41482
162 Ga0268265_10002839 3300028380 Bacteria 12732
163 Ga0268264_10000036 3300028381 Bacteria 392994
164 Ga0268264_10003953 3300028381 Bacteria 12695
165 Ga0268264_10023876 3300028381 Bacteria 4987
166 Ga0265332_10057859 3300031238 Bacteria 1660
167 Ga0265331_10051523 3300031250 Bacteria 1970
168 Ga0265327_10000238 3300031251 Bacteria 109943
169 Ga0307513_10008770 3300031456 Bacteria 12879
170 Ga0307408_100000051 3300031548 Bacteria 154427
171 Ga0307408_100001234 3300031548 Bacteria 19190
172 Ga0316575_10008705 3300031665 Bacteria 3702
173 Ga0316578_10026205 3300031728 Bacteria 3286
174 Ga0307406_10000701 3300031901 Bacteria 18905
175 Ga0307411_10088641 3300032005 Bacteria 2153
176 Ga0373934_0011908 3300035086 Bacteria 3279
177 Ga0373954_0002844 3300035118 Bacteria 7293
178 Ga0373933_0010676 3300035724 Bacteria 5037
179 Ga0373937_0017299 3300036401 Bacteria 6420
180 Ga0373937_0070195 3300036401 Bacteria 3231
181 Ga0373925_0060593 3300037068 Bacteria 2842
182 Ga0395905_0052504 3300037471 Bacteria 3816
183 Ga0436364_0207337 3300037853 Bacteria 2924
184 Ga0400484_26939 3300038725 Bacteria 43017
185 Ga0400490_47081 3300038726 Bacteria 19193
186 Ga0400491_14579 3300038727 Bacteria 4283
187 Ga0400488_57471 3300038741 Bacteria 3102
188 Ga0400483_042932 3300039062 Bacteria 7088
189 Ga0400483_161317 3300039062 Bacteria 5194
190 Ga0436360_0133508 3300039438 Bacteria 2128
191 Ga0436360_1039492 3300039438 Bacteria 2607
192 Ga0436363_1044580 3300039450 Bacteria 1965
193 Ga0436362_0685955 3300039453 Bacteria 6540
194 Ga0436362_0864881 3300039453 Bacteria 2189
195 Ga0436362_1269477 3300039453 Bacteria 6207
196 Ga0451807_1361628 3300041486 Bacteria 1794
197 Ga0451577_0000995 3300042876 Bacteria 41255
198 Ga0451577_0009952 3300042876 Bacteria 9115
199 Ga0453683_0020413 3300044673 Bacteria 4233
200 Ga0451576_0120578 3300045051 Bacteria 2730
201 Ga0495591_026122 3300046458 Bacteria 1821
202 Ga0495580_0005508 3300046472 Bacteria 10458
203 Ga0495580_0125330 3300046472 Bacteria 1782
204 Ga0495618_0030676 3300046514 Bacteria 3359
205 Ga0495644_0006748 3300046523 Bacteria 4445
206 Ga0495654_0015992 3300046530 Bacteria 3975
207 Ga0495586_0035856 3300046535 Bacteria 2664
208 Ga0495621_0004687 3300046539 Bacteria 3869
209 Ga0495667_0038671 3300046559 Bacteria 3176
210 Ga0495667_0083387 3300046559 Bacteria 2076
211 Ga0495667_0170567 3300046559 Bacteria 1398
212 Ga0495625_0017530 3300046660 Bacteria 5606
213 Ga0495635_0019134 3300046663 Bacteria 4778
214 Ga0495635_0036544 3300046663 Bacteria 3404
215 Ga0495623_0046472 3300046679 Bacteria 2755
216 Ga0495647_0000995 3300046681 Bacteria 8609
217 Ga0495647_0017031 3300046681 Bacteria 2567
218 Ga0495658_0009785 3300046683 Bacteria 4780
219 Ga0495604_0068983 3300047317 Bacteria 2681
220 Ga0496102_0005839 3300048905 Bacteria 10475
221 Ga0496106_0002839 3300048909 Bacteria 12857
222 Ga0496108_0086448 3300048911 Bacteria 2662
223 Ga0496125_0039379 3300048928 Bacteria 4071
224 Ga0496126_0059038 3300048929 Bacteria 3456
225 Ga0501031_0057645 3300049568 Bacteria 2531
226 Ga0501047_0165600 3300049581 Bacteria 2081
227 Ga0501072_0314407 3300049588 Bacteria 1245
228 Ga0501076_0129306 3300049592 Bacteria 2048
229 nmdc:mga05p37_13709_c1 3300050507 Bacteria 9717
230 nmdc:mga05p37_30326_c1 3300050507 Bacteria 6598
231 nmdc:mga0n895_8943_c1 3300050512 Bacteria 8731
232 nmdc:mga0rr50_1824_c1 3300050513 Bacteria 11777
233 nmdc:mga0a205_229059_c1 3300050515 Bacteria 1742
234 Ga0495601_0012754 3300053077 Bacteria 5044
235 Ga0495595_0012938 3300053084 Bacteria 3520
236 Ga0495595_0020802 3300053084 Bacteria 2859
237 Ga0495595_0056344 3300053084 Bacteria 1831
238 Ga0495619_0007816 3300053085 Bacteria 6769
239 Ga0495619_0007857 3300053085 Bacteria 6747
240 Ga0495619_0018101 3300053085 Bacteria 4467
241 Ga0500595_026739 3300053119 Bacteria 1985
242 2691330415 2690315857 Bacteria 4396207
243 2738713968 2738541276 Bacteria 4690596
244 2894512717 2894510363 Bacteria 5121143
245 2919535471 2919534386 Bacteria 4577686
246 2989394226 2989392574 Bacteria 4554005
247 8001523265 8001522603 Bacteria 4726425
248 Ga0070690_100000219
249 rootH2_10061105
250 rootH1_10008777
251 Ga0070658_10023570
252 Ga0070670_100000015
253 Ga0070670_100005542
254 Ga0068869_100170371
255 Ga0070666_10006635
256 Ga0070666_10013990
257 Ga0070666_10028476
258 Ga0070666_10093362
259 Ga0070660_100062495
260 Ga0070692_10002043
261 Ga0070669_100001929
262 Ga0070669_100067550
263 Ga0070675_100114701
264 Ga0070675_100126751
265 Ga0070671_100000013
266 Ga0070674_100066878
267 Ga0070688_100001685
268 Ga0070667_100000015
269 Ga0070667_100001693
270 Ga0070714_100012841
271 Ga0070710_10000897
272 Ga0070694_100056492
273 Ga0070708_100029848
274 Ga0070708_100057854
275 Ga0070708_100169718
276 Ga0070663_100010904
277 Ga0070678_100005896
278 Ga0068867_100166125
279 Ga0070685_10000116
280 Ga0070706_100008995
281 Ga0070707_100004019
282 Ga0070707_100106330
283 Ga0070698_100002318
284 Ga0070699_100169566
285 Ga0070697_100098513
286 Ga0070697_100123306
287 Ga0070672_100019437
288 Ga0070672_100047577
289 Ga0070696_100014149
290 Ga0070693_100011731
291 Ga0070665_100006002
292 Ga0070665_100027715
293 Ga0070704_100108449
294 Ga0068855_100260084
295 Ga0070664_100035179
296 Ga0070664_100112942
297 Ga0068856_100009736
298 Ga0068856_100067819
299 Ga0068859_100000339
300 Ga0068859_100087470
301 Ga0068859_100217889
302 Ga0068864_100000056
303 Ga0068864_100002617
304 Ga0068864_100003305
305 Ga0068861_100024896
306 Ga0068861_100037206
307 Ga0068863_100017388
308 Ga0068863_100051748
309 Ga0068863_100108571
310 Ga0068858_100000221
311 Ga0068858_100013383
312 Ga0068860_100002288
313 Ga0068860_100003304
314 Ga0068862_100004456
315 Ga0068862_100033084
316 Ga0068862_100074503
317 Ga0081455_10019589
318 Ga0070717_10023634
319 Ga0070712_100041194
320 Ga0075428_100095767
321 Ga0075433_10006334
322 Ga0075433_10213568
323 Ga0075434_100052893
324 Ga0097620_100000339
325 Ga0097620_100087469
326 Ga0097620_100217895
327 Ga0079104_1003797
328 Ga0075435_100065134
329 Ga0099795_10056884
330 Ga0105247_10037276
331 Ga0114129_10021217
332 Ga0114129_10041587
333 Ga0105248_10002759
334 Ga0105248_10114383
335 Ga0105248_10199220
336 Ga0105249_10001106
337 Ga0105249_10030593
338 Ga0157370_10045543
339 Ga0157374_10006434
340 Ga0157378_10005211
341 Ga0163162_10009267
342 Ga0163162_10066193
343 Ga0163162_10105921
344 Ga0157375_10001574
345 Ga0157375_10021472
346 Ga0157375_10024227
347 Ga0163163_10000158
348 Ga0163163_10102495
349 Ga0163163_10216834
350 Ga0157380_10017544
351 Ga0157380_10019843
352 Ga0157379_10006246
353 Ga0157379_10129804
354 Ga0157379_10208632
355 Ga0157376_10005114
356 Ga0157376_10039456
357 Ga0163161_10175741
358 Ga0213873_10004651
359 Ga0228598_1006528
360 Ga0207697_10022432
361 Ga0207710_10012515
362 Ga0207680_10000910
363 Ga0207680_10072460
364 Ga0207647_10065939
365 Ga0207684_10088628
366 Ga0207684_10098211
367 Ga0207693_10001207
368 Ga0207681_10002419
369 Ga0207681_10111716
370 Ga0207650_10000013
371 Ga0207644_10000106
372 Ga0207706_10023527
373 Ga0207706_10039779
374 Ga0207670_10073803
375 Ga0207691_10000738
376 Ga0207691_10006042
377 Ga0207691_10033109
378 Ga0207711_10000200
379 Ga0207711_10000303
380 Ga0207689_10001800
381 Ga0207689_10007399
382 Ga0207679_10010856
383 Ga0207679_10068544
384 Ga0207651_10048340
385 Ga0207658_10000005
386 Ga0207658_10002940
387 Ga0207658_10024954
388 Ga0207703_10001581
389 Ga0207703_10250353
390 Ga0207678_10003285
391 Ga0207702_10052249
392 Ga0207641_10004500
393 Ga0207641_10005135
394 Ga0207641_10010622
395 Ga0207641_10058510
396 Ga0207641_10065408
397 Ga0207648_10003629
398 Ga0207648_10170385
399 Ga0207676_10000010
400 Ga0207676_10133524
401 Ga0207675_100017353
402 Ga0207675_100027900
403 Ga0207675_100121724
404 Ga0207683_10081850
405 Ga0209281_1005614
406 Ga0268266_10020643
407 Ga0268266_10027015
408 Ga0268265_10000486
409 Ga0268265_10002839
410 Ga0268264_10000036
411 Ga0268264_10003953
412 Ga0268264_10023876
413 Ga0265332_10057859
414 Ga0265331_10051523
415 Ga0265327_10000238
416 Ga0307513_10008770
417 Ga0307408_100000051
418 Ga0307408_100001234
419 Ga0316575_10008705
420 Ga0316578_10026205
421 Ga0307406_10000701
422 Ga0307411_10088641
423 Ga0373934_0011908
424 Ga0373954_0002844
425 Ga0373933_0010676
426 Ga0373937_0017299
427 Ga0373937_0070195
428 Ga0373925_0060593
429 Ga0395905_0052504
430 Ga0436364_0207337
431 Ga0400484_26939
432 Ga0400490_47081
433 Ga0400491_14579
434 Ga0400488_57471
435 Ga0400483_042932
436 Ga0400483_161317
437 Ga0436360_0133508
438 Ga0436360_1039492
439 Ga0436363_1044580
440 Ga0436362_0685955
441 Ga0436362_0864881
442 Ga0436362_1269477
443 Ga0451807_1361628
444 Ga0451577_0000995
445 Ga0451577_0009952
446 Ga0453683_0020413
447 Ga0451576_0120578
448 Ga0495591_026122
449 Ga0495580_0005508
450 Ga0495580_0125330
451 Ga0495618_0030676
452 Ga0495644_0006748
453 Ga0495654_0015992
454 Ga0495586_0035856
455 Ga0495621_0004687
456 Ga0495667_0038671
457 Ga0495667_0083387
458 Ga0495667_0170567
459 Ga0495625_0017530
460 Ga0495635_0019134
461 Ga0495635_0036544
462 Ga0495623_0046472
463 Ga0495647_0000995
464 Ga0495647_0017031
465 Ga0495658_0009785
466 Ga0495604_0068983
467 Ga0496102_0005839
468 Ga0496106_0002839
469 Ga0496108_0086448
470 Ga0496125_0039379
471 Ga0496126_0059038
472 Ga0501031_0057645
473 Ga0501047_0165600
474 Ga0501072_0314407
475 Ga0501076_0129306
476 nmdc:mga05p37_13709_c1
477 nmdc:mga05p37_30326_c1
478 nmdc:mga0n895_8943_c1
479 nmdc:mga0rr50_1824_c1
480 nmdc:mga0a205_229059_c1
481 Ga0495601_0012754
482 Ga0495595_0012938
483 Ga0495595_0020802
484 Ga0495595_0056344
485 Ga0495619_0007816
486 Ga0495619_0007857
487 Ga0495619_0018101
488 Ga0500595_026739
489 2691330415
490 2738713968
491 2894512717
492 2919535471
493 2989394226
494 8001523265

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

154

321

0.99

PF02954

HTH_8

Bacterial regulatory protein, Fis family

426

467

0.92

PF00072

Response_reg

Response regulator receiver domain

14

126

0.91

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

155

325

0.88

PF07728

AAA_5

AAA domain (dynein-related subfamily)

177

304

0.76

PF01078

Mg_chelatase

Magnesium chelatase, subunit ChlI

161

304

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bs1-assembly1.cif.gz_A-1 mub is an aaaplus atpase that forms helical filaments to control target selection for dna transposition 0.9535 327 394
6ifh-assembly1.cif.gz_A unphosphorylated spo0f from paenisporosarcina sp. tg-14 0.9466 9 126
4qhs-assembly1.cif.gz_F crystal structure of aaa+sigma 54 activator domain of the flagellar regulatory protein flrc of vibrio cholerae in nucleotide free state 0.9452 150 382
6luf-assembly4.cif.gz_D trans-acting mutant y290a of the central aaa+ domain of the flagellar regulatory protein flrc 0.9422 150 391
5ep2-assembly1.cif.gz_A quorum-sensing signal integrator luxo - catalytic domain in complex with azau inhibitor 0.9411 149 390
ID Description Score Start End Superfamily
af_Q06065_316_382_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9872 321 386 1.10.8.60
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9838 150 318 3.40.50.300
1ny5B03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9795 327 392 1.10.8.60
1ny6B02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9731 327 391 1.10.8.60
1ojlE02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9686 321 390 1.10.8.60
ID Description Score Start End GO Terms
AF-A0A850NXH2-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9616 151 340 GO:0003677
GO:0005524
GO:0006355
GO:0016887
GO:0032508
AF-A0A7C5Q6C3-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9615 149 321 GO:0005524
GO:0006355
GO:0016887
AF-A0A496Z807-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9596 149 322 GO:0005524
GO:0006355
GO:0016887
AF-A0A5C9AV88-F1-model_v4 Sigma-54-dependent transcriptional regulator 0.9588 147 391 GO:0003677
GO:0005524
GO:0006355
GO:0016887
AF-A0A377ZU10-F1-model_v4 Psp operon transcriptional activator 0.9579 149 379 GO:0003677
GO:0005524
GO:0006355
GO:0016887

Map