F356041

General Info

Members Datasets Scaffolds Average Seq Length
243 176 216 544

Family's Representative Sequence

Representative Sequence 3300053153|Ga0500616_0000990|Ga0500616_0000990_9816_11474
Length 552
Sequence MAKDLRFNVEARQLLEAGVNALADAVKVTLGPKGRNAVIEKLTGAPTITNDGVTIAREIQLRNPFANMGAQLVKEVAMKTNGVAGDGTTTATVLAQALVREGLHAIGDSDNPANPMQVKIGIEQAVAAVIEVLTERSLPIAGEVDLQHVAMLSANNDTAIGDVIAQALGRVGRAGVVTVEEWPQFGMGLSFTDGVEFDHGYISPYFVTDENRMEAVLDDAYVLLTNEKISSVQTLMPVLEQVQRSGRPLVILAENVEGPALSVLITNKVHQTFSSCVVRAPGFGHRRVAELQDLAAILGGQVISTETGTSLASVKLEQLGRAHRITVTEAGTTIVGGAGDQATISGRLQQLQRELERADNEHDQDNLKLRIARLSGTVAVIHVGAATGVELKEKQHRLEDSLSATQAALDEGVVAGGGVALVQAQPALDLLNLTGDAAQGRDIVRRALEEPLRWIVINAGYQGDEVVKQVSQLAAGHGFNALTGEYGDMFEFGIIDPLKVTRSALQSAASIAALLLTTETLIVEEVLTNPGAIVAPGFGDLAEGMVRPSNIY

Samples

Sample ID Description Type Environment
1 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
2 2527291627 Frankia casuarinae Thr Isolate Nodule
3 2527291629 Frankia sp. BMG5.23 Isolate Nodule
4 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
5 2554235469 Sporolactobacillus laevolacticus DSM 442 Isolate Rhizosphere
6 2576861822 Frankia sp. CeD Isolate Nodule
7 2643221561 Nocardioides sp. Root151 Isolate Unclassified
8 2643221576 Nocardioides sp. Root614 Isolate Unclassified
9 2643221590 Nocardioides sp. Root682 Isolate Unclassified
10 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
11 2643221696 Nocardioides sp. Root140 Isolate Unclassified
12 2684623036 Frankia sp. CgIM4 Isolate Nodule
13 2710264753 Frankia sp. KB5 Isolate Nodule
14 2711768088 Sporolactobacillus terrae DSM 11697 Isolate Rhizosphere
15 2773857924 Frankia sp. CgIS1 Isolate Nodule
16 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
17 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
18 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
19 2902792274 Mycolicibacterium sp. P9-64 Isolate Unclassified
20 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
21 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
22 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
23 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
24 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
25 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
26 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
27 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
28 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
29 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
30 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
31 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
32 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
33 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
34 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
35 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
36 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
37 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
38 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
39 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
40 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
41 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
42 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
43 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
44 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
45 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
46 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
47 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
48 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
49 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
50 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
51 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
52 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
53 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
54 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
55 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
56 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
57 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
58 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
59 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
60 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
61 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
62 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
63 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
64 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
65 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
66 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
67 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
68 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
69 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
70 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
71 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
72 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
73 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
74 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
75 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
76 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
77 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
78 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
79 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
80 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
108 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
109 3300031592 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA4 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
110 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
111 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
112 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
113 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
114 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
115 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
116 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
117 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
118 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
119 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
120 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
121 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
122 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
123 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
124 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
125 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
126 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
127 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
128 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
129 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
130 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
131 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
132 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
133 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
134 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
135 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
136 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
137 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
138 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
139 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
140 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
141 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
142 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
143 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
144 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
145 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
146 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
147 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
148 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
149 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
150 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
151 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
152 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
153 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
154 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
155 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
156 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
157 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
159 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
161 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
162 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
163 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
164 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
165 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
166 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
167 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
168 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
169 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
170 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
171 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
172 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
173 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
174 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
175 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
176 637000116 Frankia casuarinae CcI3 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 88.07
Metatranscriptomes 0.82
Isolates 11.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.35
Nodule 2.88
Rhizoplane 14.81
Rhizosphere 65.84
Stem 0
Stem Tuber 0.41
Unclassified 10.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1000369 3300001977 Bacteria 6597
2 JGI24740J21852_10023886 3300001979 Bacteria 2080
3 JGI24739J22299_10012904 3300001989 Bacteria 3059
4 JGI24737J22298_10009274 3300001990 Bacteria 3280
5 JGI24743J22301_10001882 3300001991 Bacteria 3039
6 JGI24742J22300_10001282 3300002244 Bacteria 3946
7 Ga0055540_1000775 3300003792 Bacteria 21695
8 Ga0055540_1001498 3300003792 Bacteria 13892
9 Ga0055540_1002566 3300003792 Bacteria 9472
10 Ga0070658_10093181 3300005327 Bacteria 2485
11 Ga0070690_100007487 3300005330 Bacteria 6254
12 Ga0070690_100044514 3300005330 Bacteria 2817
13 Ga0070682_100032650 3300005337 Bacteria 3158
14 Ga0068868_100035452 3300005338 Bacteria 3856
15 Ga0070689_100043804 3300005340 Bacteria 3441
16 Ga0070669_100109487 3300005353 Bacteria 2095
17 Ga0070673_100119572 3300005364 Bacteria 2195
18 Ga0070659_100120383 3300005366 Bacteria 2125
19 Ga0070711_100014235 3300005439 Bacteria 5009
20 Ga0070705_100056375 3300005440 Bacteria 2314
21 Ga0070685_10040496 3300005466 Bacteria 2651
22 Ga0070706_100147791 3300005467 Bacteria 2194
23 Ga0070707_100044907 3300005468 Bacteria 4230
24 Ga0070707_100144207 3300005468 Bacteria 2318
25 Ga0070698_100160226 3300005471 Bacteria 2194
26 Ga0068853_100019777 3300005539 Bacteria 5591
27 Ga0070696_100021485 3300005546 Bacteria 4375
28 Ga0070704_100052859 3300005549 Bacteria 2868
29 Ga0068857_100075316 3300005577 Bacteria 3009
30 Ga0070702_100005968 3300005615 Bacteria 5729
31 Ga0068859_100029823 3300005617 Bacteria 5472
32 Ga0068866_10002701 3300005718 Bacteria 7322
33 Ga0068861_100069615 3300005719 Bacteria 2722
34 Ga0081455_10009962 3300005937 Bacteria 9716
35 Ga0081455_10013674 3300005937 Bacteria 7994
36 Ga0081538_10000664 3300005981 Bacteria 37865
37 Ga0081538_10008845 3300005981 Bacteria 8475
38 Ga0081538_10009398 3300005981 Bacteria 8169
39 Ga0081538_10020594 3300005981 Bacteria 4846
40 Ga0081539_10000400 3300005985 Bacteria 92908
41 Ga0081539_10058923 3300005985 Bacteria 2117
42 Ga0070717_10001284 3300006028 Bacteria 17163
43 Ga0070717_10001734 3300006028 Bacteria 15205
44 Ga0070717_10037712 3300006028 Bacteria 3926
45 Ga0075430_100010377 3300006846 Bacteria 7889
46 Ga0075431_100117364 3300006847 Bacteria 2746
47 Ga0068865_100003922 3300006881 Bacteria 8930
48 Ga0097620_100029823 3300006931 Bacteria 5472
49 Ga0111539_10007452 3300009094 Bacteria 14019
50 Ga0111539_10045428 3300009094 Bacteria 5258
51 Ga0111539_10063080 3300009094 Bacteria 4385
52 Ga0105243_10033161 3300009148 Bacteria 3992
53 Ga0105243_10037702 3300009148 Bacteria 3759
54 Ga0105248_10077505 3300009177 Bacteria 3736
55 Ga0105237_10161342 3300009545 Bacteria 2240
56 Ga0105249_10044590 3300009553 Bacteria 4032
57 Ga0105239_10107172 3300010375 Bacteria 3095
58 Ga0105239_10269292 3300010375 Bacteria 1915
59 Ga0157378_10007177 3300013297 Bacteria 9731
60 Ga0163162_10241972 3300013306 Bacteria 1935
61 Ga0157372_10179468 3300013307 Bacteria 2451
62 Ga0163163_10085071 3300014325 Bacteria 3170
63 Ga0163163_10164287 3300014325 Bacteria 2266
64 Ga0163163_10258610 3300014325 Bacteria 1792
65 Ga0157380_10047092 3300014326 Bacteria 3389
66 Ga0157377_10013634 3300014745 Bacteria 4119
67 Ga0163161_10045677 3300017792 Bacteria 3159
68 Ga0197907_10356259 3300020069 Bacteria 2792
69 Ga0213876_10004328 3300021384 Bacteria 7957
70 Ga0213875_10000186 3300021388 Bacteria 63592
71 Ga0209051_1000318 3300025303 Bacteria 73053
72 Ga0209051_1000595 3300025303 Bacteria 42760
73 Ga0209051_1001295 3300025303 Bacteria 22036
74 Ga0207653_10001797 3300025885 Bacteria 6853
75 Ga0207642_10024610 3300025899 Bacteria 2423
76 Ga0207710_10028075 3300025900 Bacteria 2441
77 Ga0207680_10088847 3300025903 Bacteria 1960
78 Ga0207647_10011201 3300025904 Bacteria 6300
79 Ga0207647_10013899 3300025904 Bacteria 5572
80 Ga0207684_10006157 3300025910 Bacteria 10973
81 Ga0207693_10035199 3300025915 Bacteria 3948
82 Ga0207662_10042968 3300025918 Bacteria 2665
83 Ga0207657_10082821 3300025919 Bacteria 2692
84 Ga0207646_10004445 3300025922 Bacteria 15203
85 Ga0207681_10047806 3300025923 Bacteria 2885
86 Ga0207687_10027133 3300025927 Bacteria 3841
87 Ga0207687_10058743 3300025927 Bacteria 2707
88 Ga0207686_10021516 3300025934 Bacteria 3703
89 Ga0207669_10005734 3300025937 Bacteria 5602
90 Ga0207704_10006754 3300025938 Bacteria 5377
91 Ga0207665_10023058 3300025939 Bacteria 4100
92 Ga0207665_10042922 3300025939 Bacteria 3023
93 Ga0207691_10040062 3300025940 Bacteria 4331
94 Ga0207691_10043605 3300025940 Bacteria 4133
95 Ga0207691_10098825 3300025940 Bacteria 2607
96 Ga0207689_10023878 3300025942 Bacteria 5129
97 Ga0207712_10068861 3300025961 Bacteria 2538
98 Ga0207712_10074190 3300025961 Bacteria 2456
99 Ga0207703_10032807 3300026035 Bacteria 4112
100 Ga0207639_10028764 3300026041 Bacteria 4061
101 Ga0207708_10006747 3300026075 Bacteria 8493
102 Ga0207708_10016712 3300026075 Bacteria 5521
103 Ga0207648_10171478 3300026089 Bacteria 1918
104 Ga0207675_100015029 3300026118 Bacteria 7223
105 Ga0207675_100069243 3300026118 Bacteria 3298
106 Ga0207675_100206552 3300026118 Bacteria 1887
107 Ga0207683_10046782 3300026121 Bacteria 3788
108 Ga0207683_10123338 3300026121 Bacteria 2327
109 Ga0268264_10088195 3300028381 Bacteria 2669
110 Ga0307515_10052738 3300028794 Bacteria 6023
111 Ga0307513_10001463 3300031456 Bacteria 33963
112 Ga0307513_10192759 3300031456 Bacteria 1888
113 Ga0310117_103443 3300031592 Bacteria 1673
114 Ga0316575_10013430 3300031665 Bacteria 3059
115 Ga0307410_10058243 3300031852 Bacteria 2633
116 Ga0307407_10018608 3300031903 Bacteria 3518
117 Ga0307407_10054692 3300031903 Bacteria 2303
118 Ga0307409_100028934 3300031995 Bacteria 3957
119 Ga0307409_100070611 3300031995 Bacteria 2773
120 Ga0307416_100013630 3300032002 Bacteria 5535
121 Ga0307416_100055821 3300032002 Bacteria 3183
122 Ga0307416_100139811 3300032002 Bacteria 2198
123 Ga0307414_10050187 3300032004 Bacteria 2889
124 Ga0307415_100025552 3300032126 Bacteria 3708
125 Ga0307415_100067470 3300032126 Bacteria 2500
126 Ga0307507_10015103 3300033179 Bacteria 9122
127 Ga0395900_0014138 3300037418 Bacteria 8149
128 Ga0395900_0030014 3300037418 Bacteria 5580
129 Ga0395900_0081285 3300037418 Bacteria 3329
130 Ga0395898_0003366 3300037466 Bacteria 17922
131 Ga0395898_0012832 3300037466 Bacteria 8646
132 Ga0395898_0029778 3300037466 Bacteria 5465
133 Ga0395905_0015536 3300037471 Bacteria 7235
134 Ga0395905_0016726 3300037471 Bacteria 6970
135 Ga0436364_1040466 3300037853 Bacteria 95595
136 Ga0395901_0009511 3300038443 Bacteria 9860
137 Ga0395901_0013281 3300038443 Bacteria 8364
138 Ga0395901_0022754 3300038443 Bacteria 6427
139 Ga0436365_1649890 3300039437 Bacteria 15288
140 Ga0439461_0003524 3300041410 Bacteria 2579
141 Ga0439465_0000280 3300041413 Bacteria 14305
142 Ga0451793_1459018 3300041452 Bacteria 2977
143 Ga0466972_0003880 3300044658 Bacteria 7447
144 Ga0466965_0002100 3300044683 Bacteria 8360
145 Ga0466960_0000387 3300044901 Bacteria 15104
146 Ga0466958_0096056 3300045836 Bacteria 1838
147 Ga0466967_0059322 3300045976 Bacteria 3386
148 Ga0495603_0116114 3300046455 Bacteria 1561
149 Ga0495650_0000121 3300046471 Bacteria 183055
150 Ga0495581_0013064 3300047315 Bacteria 4813
151 Ga0495672_0010866 3300047320 Bacteria 6458
152 Ga0495673_0006080 3300047469 Bacteria 7168
153 Ga0496100_0002773 3300048903 Bacteria 8960
154 Ga0496101_0000102 3300048904 Bacteria 88779
155 Ga0496101_0033250 3300048904 Bacteria 3636
156 Ga0496102_0000037 3300048905 Bacteria 199368
157 Ga0496102_0041574 3300048905 Bacteria 4163
158 Ga0496102_0059939 3300048905 Bacteria 3481
159 Ga0496102_0071871 3300048905 Bacteria 3177
160 Ga0496103_0000004 3300048906 Bacteria 510080
161 Ga0496103_0046254 3300048906 Bacteria 2686
162 Ga0496103_0105541 3300048906 Bacteria 1786
163 Ga0496104_0001942 3300048907 Bacteria 17924
164 Ga0496106_0003395 3300048909 Bacteria 11865
165 Ga0496106_0014216 3300048909 Bacteria 5878
166 Ga0496106_0015607 3300048909 Bacteria 5617
167 Ga0496106_0016033 3300048909 Bacteria 5541
168 Ga0496106_0035497 3300048909 Bacteria 3728
169 Ga0496106_0043735 3300048909 Bacteria 3361
170 Ga0496107_0007662 3300048910 Bacteria 7454
171 Ga0496107_0041204 3300048910 Bacteria 3316
172 Ga0496108_0001190 3300048911 Bacteria 20333
173 Ga0496108_0004397 3300048911 Bacteria 11344
174 Ga0496109_0001872 3300048912 Bacteria 17440
175 Ga0496109_0003783 3300048912 Bacteria 12627
176 Ga0496109_0212605 3300048912 Bacteria 1819
177 Ga0496110_0010566 3300048913 Bacteria 7517
178 Ga0496110_0038396 3300048913 Bacteria 4167
179 Ga0496110_0214431 3300048913 Bacteria 1750
180 Ga0496111_0006242 3300048914 Bacteria 7726
181 Ga0496111_0019679 3300048914 Bacteria 4694
182 Ga0496111_0088120 3300048914 Bacteria 2272
183 Ga0496112_0038322 3300048915 Bacteria 4680
184 Ga0496112_0093175 3300048915 Bacteria 2983
185 Ga0496115_0005977 3300048918 Bacteria 8886
186 Ga0496115_0012610 3300048918 Bacteria 6366
187 Ga0496116_0000276 3300048919 Bacteria 89506
188 Ga0496117_0000003 3300048920 Bacteria 1881097
189 Ga0496118_0000001 3300048921 Bacteria 1881100
190 Ga0496120_0071303 3300048923 Bacteria 1907
191 Ga0496121_0000338 3300048924 Bacteria 97703
192 Ga0496126_0004123 3300048929 Bacteria 17588
193 Ga0501039_0026986 3300049575 Bacteria 4415
194 Ga0501040_0059326 3300049576 Bacteria 2629
195 Ga0501042_0094491 3300049578 Bacteria 2147
196 Ga0501048_0086130 3300049582 Bacteria 2216
197 Ga0501071_0018885 3300049587 Bacteria 4780
198 Ga0501075_0034038 3300049591 Bacteria 3792
199 Ga0501081_0115331 3300049743 Bacteria 1909
200 Ga0501035_0045480 3300049822 Bacteria 3950
201 Ga0501045_0015473 3300049824 Bacteria 5412
202 nmdc:mga07m45_34196_c1 3300050496 Bacteria 2824
203 nmdc:mga0qj67_35106_c1 3300050509 Bacteria 3919
204 nmdc:mga06r32_88973_c1 3300050510 Bacteria 3014
205 nmdc:mga08y16_10815_c1 3300050511 Bacteria 9581
206 nmdc:mga08y16_174160_c1 3300050511 Bacteria 2234
207 nmdc:mga0n895_169641_c1 3300050512 Bacteria 2214
208 Ga0495655_0004996 3300053083 Bacteria 2313
209 Ga0500643_003589 3300053087 Bacteria 7376
210 Ga0500556_0000795 3300053104 Bacteria 18495
211 Ga0500616_0000990 3300053153 Bacteria 30708
212 Ga0500616_0007952 3300053153 Bacteria 6660
213 Ga0500616_0008373 3300053153 Bacteria 6434
214 Ga0500616_0013597 3300053153 Bacteria 4717
215 Ga0501084_0026269 3300054114 Bacteria 4857
216 Ga0466962_0009532 3300061719 Bacteria 4657

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049582 Ga0501048_0086130 Ga0501048_0086130_10_1353 447
2 3300046455 Ga0495603_0116114 Ga0495603_0116114_149_1549 455
3 3300047469 Ga0495673_0006080 Ga0495673_0006080_5733_7151 472
4 3300025899 Ga0207642_10024610 Ga0207642_100246102 503
5 3300031592 Ga0310117_103443 Ga0310117_1034431 511
6 3300013306 Ga0163162_10241972 Ga0163162_102419721 520
7 3300031665 Ga0316575_10013430 Ga0316575_100134302 520
8 3300049587 Ga0501071_0018885 Ga0501071_0018885_268_1917 520
9 3300049591 Ga0501075_0034038 Ga0501075_0034038_677_2326 520
10 3300005467 Ga0070706_100147791 Ga0070706_1001477911 522
11 3300005468 Ga0070707_100044907 Ga0070707_1000449075 522
12 3300005471 Ga0070698_100160226 Ga0070698_1001602261 522
13 3300006028 Ga0070717_10001284 Ga0070717_100012843 522
14 3300020069 Ga0197907_10356259 Ga0197907_103562592 522
15 3300025910 Ga0207684_10006157 Ga0207684_100061578 522
16 3300025922 Ga0207646_10004445 Ga0207646_100044453 522
17 3300048918 Ga0496115_0012610 Ga0496115_0012610_836_2452 522
18 3300005985 Ga0081539_10000400 Ga0081539_1000040020 528
19 3300005985 Ga0081539_10058923 Ga0081539_100589231 529
20 3300014325 Ga0163163_10164287 Ga0163163_101642872 529
21 3300048913 Ga0496110_0214431 Ga0496110_0214431_145_1740 531
22 3300049575 Ga0501039_0026986 Ga0501039_0026986_454_2103 531
23 iso_pu_bacteria 2554235469 2556065590 531
24 3300031456 Ga0307513_10001463 Ga0307513_1000146317 532
25 3300005468 Ga0070707_100144207 Ga0070707_1001442072 533
26 3300045836 Ga0466958_0096056 Ga0466958_0096056_171_1820 533
27 3300025940 Ga0207691_10040062 Ga0207691_100400621 534
28 iso_pu_bacteria 2711768088 2712199241 534
29 3300003792 Ga0055540_1000775 Ga0055540_10007758 535
30 3300021384 Ga0213876_10004328 Ga0213876_100043286 535
31 3300025303 Ga0209051_1000318 Ga0209051_100031876 535
32 3300028794 Ga0307515_10052738 Ga0307515_100527386 535
33 3300031852 Ga0307410_10058243 Ga0307410_100582432 535
34 3300031903 Ga0307407_10018608 Ga0307407_100186083 535
35 3300031903 Ga0307407_10054692 Ga0307407_100546921 535
36 3300031995 Ga0307409_100028934 Ga0307409_1000289341 535
37 3300032002 Ga0307416_100013630 Ga0307416_1000136301 535
38 3300032002 Ga0307416_100139811 Ga0307416_1001398111 535
39 3300032004 Ga0307414_10050187 Ga0307414_100501872 535
40 3300039437 Ga0436365_1649890 Ga0436365_1649890_4987_6654 535
41 3300032126 Ga0307415_100025552 Ga0307415_1000255522 536
42 3300053153 Ga0500616_0013597 Ga0500616_0013597_1650_3299 537
43 3300005327 Ga0070658_10093181 Ga0070658_100931812 538
44 3300037471 Ga0395905_0015536 Ga0395905_0015536_2583_4232 538
45 3300053083 Ga0495655_0004996 Ga0495655_0004996_205_1854 543
46 iso_pu_bacteria 2643221687 2644486679 544
47 iso_pu_bacteria 2902792274 2902798372 544
48 iso_pu_bacteria 2523231044 2523384685 545
49 iso_pu_bacteria 2527291627 2528205982 545
50 iso_pu_bacteria 2527291629 2528215646 545
51 iso_pu_bacteria 2546825537 2546951162 545
52 iso_pu_bacteria 2576861822 2579750834 545
53 iso_pu_bacteria 2643221561 2643824658 545
54 iso_pu_bacteria 2643221576 2643890841 545
55 iso_pu_bacteria 2643221590 2643959897 545
56 iso_pu_bacteria 2643221696 2644535910 545
57 iso_pu_bacteria 2684623036 2686544043 545
58 iso_pu_bacteria 2710264753 2710605264 545
59 iso_pu_bacteria 2773857924 2774866833 545
60 iso_pu_bacteria 2811994882 2812373475 545
61 iso_pu_bacteria 2818991318 2819427981 545
62 iso_pu_bacteria 2899370129 2899374261 545
63 iso_pu_bacteria 2904765812 2904768331 545
64 iso_pu_bacteria 2904770941 2904775806 545
65 iso_pu_bacteria 2919420072 2919421656 545
66 iso_pu_bacteria 2919432681 2919434786 545
67 iso_pu_bacteria 2929212328 2929214090 545
68 iso_pu_bacteria 2974315732 2974315778 545
69 iso_pu_bacteria 3002998708 3003003857 545
70 iso_pu_bacteria 637000116 637879843 545
71 3300003792 Ga0055540_1002566 Ga0055540_10025664 548
72 3300010375 Ga0105239_10269292 Ga0105239_102692921 548
73 3300025303 Ga0209051_1000595 Ga0209051_100059535 548
74 3300041452 Ga0451793_1459018 Ga0451793_1459018_774_2420 548
75 3300001977 JGI24746J21847_1000369 JGI24746J21847_10003691 549
76 3300001979 JGI24740J21852_10023886 JGI24740J21852_100238861 549
77 3300001989 JGI24739J22299_10012904 JGI24739J22299_100129042 549
78 3300001990 JGI24737J22298_10009274 JGI24737J22298_100092743 549
79 3300001991 JGI24743J22301_10001882 JGI24743J22301_100018821 549
80 3300002244 JGI24742J22300_10001282 JGI24742J22300_100012822 549
81 3300003792 Ga0055540_1001498 Ga0055540_10014986 549
82 3300005330 Ga0070690_100007487 Ga0070690_1000074872 549
83 3300005330 Ga0070690_100044514 Ga0070690_1000445142 549
84 3300005337 Ga0070682_100032650 Ga0070682_1000326502 549
85 3300005338 Ga0068868_100035452 Ga0068868_1000354522 549
86 3300005340 Ga0070689_100043804 Ga0070689_1000438043 549
87 3300005353 Ga0070669_100109487 Ga0070669_1001094871 549
88 3300005364 Ga0070673_100119572 Ga0070673_1001195722 549
89 3300005366 Ga0070659_100120383 Ga0070659_1001203832 549
90 3300005439 Ga0070711_100014235 Ga0070711_1000142353 549
91 3300005440 Ga0070705_100056375 Ga0070705_1000563752 549
92 3300005466 Ga0070685_10040496 Ga0070685_100404962 549
93 3300005539 Ga0068853_100019777 Ga0068853_1000197771 549
94 3300005546 Ga0070696_100021485 Ga0070696_1000214855 549
95 3300005549 Ga0070704_100052859 Ga0070704_1000528591 549
96 3300005577 Ga0068857_100075316 Ga0068857_1000753162 549
97 3300005615 Ga0070702_100005968 Ga0070702_1000059682 549
98 3300005617 Ga0068859_100029823 Ga0068859_1000298234 549
99 3300005718 Ga0068866_10002701 Ga0068866_100027015 549
100 3300005719 Ga0068861_100069615 Ga0068861_1000696151 549
101 3300005937 Ga0081455_10009962 Ga0081455_100099625 549
102 3300005937 Ga0081455_10013674 Ga0081455_100136744 549
103 3300005981 Ga0081538_10000664 Ga0081538_1000066416 549
104 3300005981 Ga0081538_10008845 Ga0081538_100088458 549
105 3300005981 Ga0081538_10009398 Ga0081538_100093988 549
106 3300005981 Ga0081538_10020594 Ga0081538_100205944 549
107 3300006028 Ga0070717_10001734 Ga0070717_1000173414 549
108 3300006028 Ga0070717_10037712 Ga0070717_100377123 549
109 3300006846 Ga0075430_100010377 Ga0075430_1000103773 549
110 3300006847 Ga0075431_100117364 Ga0075431_1001173642 549
111 3300006881 Ga0068865_100003922 Ga0068865_1000039224 549
112 3300006931 Ga0097620_100029823 Ga0097620_1000298234 549
113 3300009094 Ga0111539_10007452 Ga0111539_100074528 549
114 3300009094 Ga0111539_10045428 Ga0111539_100454284 549
115 3300009094 Ga0111539_10063080 Ga0111539_100630804 549
116 3300009148 Ga0105243_10033161 Ga0105243_100331613 549
117 3300009148 Ga0105243_10037702 Ga0105243_100377023 549
118 3300009177 Ga0105248_10077505 Ga0105248_100775053 549
119 3300009545 Ga0105237_10161342 Ga0105237_101613421 549
120 3300009553 Ga0105249_10044590 Ga0105249_100445902 549
121 3300010375 Ga0105239_10107172 Ga0105239_101071722 549
122 3300013297 Ga0157378_10007177 Ga0157378_100071774 549
123 3300013307 Ga0157372_10179468 Ga0157372_101794682 549
124 3300014325 Ga0163163_10085071 Ga0163163_100850712 549
125 3300014325 Ga0163163_10258610 Ga0163163_102586101 549
126 3300014326 Ga0157380_10047092 Ga0157380_100470923 549
127 3300014745 Ga0157377_10013634 Ga0157377_100136342 549
128 3300017792 Ga0163161_10045677 Ga0163161_100456771 549
129 3300021388 Ga0213875_10000186 Ga0213875_1000018647 549
130 3300025303 Ga0209051_1001295 Ga0209051_100129513 549
131 3300025885 Ga0207653_10001797 Ga0207653_100017973 549
132 3300025900 Ga0207710_10028075 Ga0207710_100280752 549
133 3300025903 Ga0207680_10088847 Ga0207680_100888471 549
134 3300025904 Ga0207647_10011201 Ga0207647_100112013 549
135 3300025904 Ga0207647_10013899 Ga0207647_100138995 549
136 3300025915 Ga0207693_10035199 Ga0207693_100351992 549
137 3300025918 Ga0207662_10042968 Ga0207662_100429682 549
138 3300025919 Ga0207657_10082821 Ga0207657_100828212 549
139 3300025923 Ga0207681_10047806 Ga0207681_100478062 549
140 3300025927 Ga0207687_10027133 Ga0207687_100271334 549
141 3300025927 Ga0207687_10058743 Ga0207687_100587432 549
142 3300025934 Ga0207686_10021516 Ga0207686_100215162 549
143 3300025937 Ga0207669_10005734 Ga0207669_100057345 549
144 3300025938 Ga0207704_10006754 Ga0207704_100067544 549
145 3300025939 Ga0207665_10023058 Ga0207665_100230584 549
146 3300025939 Ga0207665_10042922 Ga0207665_100429222 549
147 3300025940 Ga0207691_10043605 Ga0207691_100436053 549
148 3300025940 Ga0207691_10098825 Ga0207691_100988252 549
149 3300025942 Ga0207689_10023878 Ga0207689_100238782 549
150 3300025961 Ga0207712_10068861 Ga0207712_100688612 549
151 3300025961 Ga0207712_10074190 Ga0207712_100741902 549
152 3300026035 Ga0207703_10032807 Ga0207703_100328072 549
153 3300026041 Ga0207639_10028764 Ga0207639_100287643 549
154 3300026075 Ga0207708_10006747 Ga0207708_100067476 549
155 3300026075 Ga0207708_10016712 Ga0207708_100167125 549
156 3300026089 Ga0207648_10171478 Ga0207648_101714782 549
157 3300026118 Ga0207675_100015029 Ga0207675_1000150292 549
158 3300026118 Ga0207675_100069243 Ga0207675_1000692431 549
159 3300026118 Ga0207675_100206552 Ga0207675_1002065522 549
160 3300026121 Ga0207683_10046782 Ga0207683_100467824 549
161 3300026121 Ga0207683_10123338 Ga0207683_101233382 549
162 3300028381 Ga0268264_10088195 Ga0268264_100881952 549
163 3300031456 Ga0307513_10192759 Ga0307513_101927592 549
164 3300031995 Ga0307409_100070611 Ga0307409_1000706112 549
165 3300032002 Ga0307416_100055821 Ga0307416_1000558213 549
166 3300032126 Ga0307415_100067470 Ga0307415_1000674702 549
167 3300033179 Ga0307507_10015103 Ga0307507_100151032 549
168 3300037418 Ga0395900_0014138 Ga0395900_0014138_5604_7253 549
169 3300037418 Ga0395900_0030014 Ga0395900_0030014_1968_3617 549
170 3300037418 Ga0395900_0081285 Ga0395900_0081285_417_2066 549
171 3300037466 Ga0395898_0003366 Ga0395898_0003366_5395_7044 549
172 3300037466 Ga0395898_0012832 Ga0395898_0012832_2295_3944 549
173 3300037466 Ga0395898_0029778 Ga0395898_0029778_2054_3703 549
174 3300037471 Ga0395905_0016726 Ga0395905_0016726_4609_6258 549
175 3300037853 Ga0436364_1040466 Ga0436364_1040466_73756_75405 549
176 3300038443 Ga0395901_0009511 Ga0395901_0009511_7964_9613 549
177 3300038443 Ga0395901_0013281 Ga0395901_0013281_2334_3983 549
178 3300038443 Ga0395901_0022754 Ga0395901_0022754_4669_6318 549
179 3300041410 Ga0439461_0003524 Ga0439461_0003524_765_2414 549
180 3300041413 Ga0439465_0000280 Ga0439465_0000280_10388_12037 549
181 3300044658 Ga0466972_0003880 Ga0466972_0003880_1211_2860 549
182 3300044683 Ga0466965_0002100 Ga0466965_0002100_3015_4664 549
183 3300044901 Ga0466960_0000387 Ga0466960_0000387_2195_3844 549
184 3300045976 Ga0466967_0059322 Ga0466967_0059322_1498_3147 549
185 3300046471 Ga0495650_0000121 Ga0495650_0000121_133094_134743 549
186 3300047315 Ga0495581_0013064 Ga0495581_0013064_39_1688 549
187 3300047320 Ga0495672_0010866 Ga0495672_0010866_1585_3234 549
188 3300048903 Ga0496100_0002773 Ga0496100_0002773_98_1747 549
189 3300048904 Ga0496101_0000102 Ga0496101_0000102_81645_83294 549
190 3300048904 Ga0496101_0033250 Ga0496101_0033250_1713_3362 549
191 3300048905 Ga0496102_0000037 Ga0496102_0000037_5509_7158 549
192 3300048905 Ga0496102_0041574 Ga0496102_0041574_717_2366 549
193 3300048905 Ga0496102_0059939 Ga0496102_0059939_832_2481 549
194 3300048905 Ga0496102_0071871 Ga0496102_0071871_118_1767 549
195 3300048906 Ga0496103_0000004 Ga0496103_0000004_316221_317870 549
196 3300048906 Ga0496103_0046254 Ga0496103_0046254_492_2141 549
197 3300048906 Ga0496103_0105541 Ga0496103_0105541_62_1711 549
198 3300048907 Ga0496104_0001942 Ga0496104_0001942_8105_9754 549
199 3300048909 Ga0496106_0003395 Ga0496106_0003395_4167_5816 549
200 3300048909 Ga0496106_0014216 Ga0496106_0014216_3878_5527 549
201 3300048909 Ga0496106_0015607 Ga0496106_0015607_2862_4511 549
202 3300048909 Ga0496106_0016033 Ga0496106_0016033_1333_2982 549
203 3300048909 Ga0496106_0035497 Ga0496106_0035497_167_1816 549
204 3300048909 Ga0496106_0043735 Ga0496106_0043735_1076_2725 549
205 3300048910 Ga0496107_0007662 Ga0496107_0007662_195_1844 549
206 3300048910 Ga0496107_0041204 Ga0496107_0041204_1411_3060 549
207 3300048911 Ga0496108_0001190 Ga0496108_0001190_5090_6739 549
208 3300048911 Ga0496108_0004397 Ga0496108_0004397_6624_8273 549
209 3300048912 Ga0496109_0001872 Ga0496109_0001872_13528_15177 549
210 3300048912 Ga0496109_0003783 Ga0496109_0003783_4141_5790 549
211 3300048912 Ga0496109_0212605 Ga0496109_0212605_119_1768 549
212 3300048913 Ga0496110_0010566 Ga0496110_0010566_3248_4897 549
213 3300048913 Ga0496110_0038396 Ga0496110_0038396_367_2016 549
214 3300048914 Ga0496111_0006242 Ga0496111_0006242_2089_3738 549
215 3300048914 Ga0496111_0019679 Ga0496111_0019679_2426_4075 549
216 3300048914 Ga0496111_0088120 Ga0496111_0088120_360_2009 549
217 3300048915 Ga0496112_0038322 Ga0496112_0038322_2184_3833 549
218 3300048915 Ga0496112_0093175 Ga0496112_0093175_1324_2973 549
219 3300048918 Ga0496115_0005977 Ga0496115_0005977_7153_8802 549
220 3300048919 Ga0496116_0000276 Ga0496116_0000276_5483_7132 549
221 3300048920 Ga0496117_0000003 Ga0496117_0000003_1514624_1516273 549
222 3300048921 Ga0496118_0000001 Ga0496118_0000001_1514627_1516276 549
223 3300048923 Ga0496120_0071303 Ga0496120_0071303_39_1688 549
224 3300048924 Ga0496121_0000338 Ga0496121_0000338_14410_16059 549
225 3300048929 Ga0496126_0004123 Ga0496126_0004123_10443_12092 549
226 3300049576 Ga0501040_0059326 Ga0501040_0059326_772_2421 549
227 3300049578 Ga0501042_0094491 Ga0501042_0094491_318_1967 549
228 3300049743 Ga0501081_0115331 Ga0501081_0115331_137_1786 549
229 3300049822 Ga0501035_0045480 Ga0501035_0045480_833_2482 549
230 3300049824 Ga0501045_0015473 Ga0501045_0015473_2768_4417 549
231 3300050496 nmdc:mga07m45_34196_c1 nmdc:mga07m45_34196_c1_1001_2650 549
232 3300050509 nmdc:mga0qj67_35106_c1 nmdc:mga0qj67_35106_c1_594_2243 549
233 3300050510 nmdc:mga06r32_88973_c1 nmdc:mga06r32_88973_c1_997_2646 549
234 3300050511 nmdc:mga08y16_10815_c1 nmdc:mga08y16_10815_c1_2619_4268 549
235 3300050511 nmdc:mga08y16_174160_c1 nmdc:mga08y16_174160_c1_16_1665 549
236 3300050512 nmdc:mga0n895_169641_c1 nmdc:mga0n895_169641_c1_160_1809 549
237 3300053087 Ga0500643_003589 Ga0500643_003589_3373_5022 549
238 3300053104 Ga0500556_0000795 Ga0500556_0000795_13178_14827 549
239 3300053153 Ga0500616_0000990 Ga0500616_0000990_9816_11474 549
240 3300053153 Ga0500616_0007952 Ga0500616_0007952_2165_3814 549
241 3300053153 Ga0500616_0008373 Ga0500616_0008373_1138_2787 549
242 3300054114 Ga0501084_0026269 Ga0501084_0026269_2928_4577 549
243 3300061719 Ga0466962_0009532 Ga0466962_0009532_431_2080 549

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00118

Cpn60_TCP1

TCP-1/cpn60 chaperonin family

22

526

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vz8-assembly3.cif.gz_C crystal structure analysis of the mini-chaperonin variant with leu 185, val 186, pro 187, arg 188 and ser 190 replaced with all gly 0.9873 192 373
1jon-assembly1.cif.gz_A groel (hsp60 class) fragment comprising residues 191-345 0.983 191 334
3osx-assembly1.cif.gz_A crystal structure of apical domain of insecticidal groel from xenorhapdus nematophila 0.9792 190 373
1fy9-assembly1.cif.gz_A crystal structure of the hexa-substituted mutant of the molecular chaperonin groel apical domain 0.9773 189 373
1srv-assembly1.cif.gz_A thermus thermophilus groel (hsp60 class) fragment (apical domain) comprising residues 192-336 0.9755 193 335
ID Description Score Start End Superfamily
3rtkB03 Alpha Beta;3-Layer(bba) Sandwich;GroEL;GroEL 0.9838 191 371 3.50.7.10
1jonA00 Alpha Beta;3-Layer(bba) Sandwich;GroEL;GroEL 0.983 191 334 3.50.7.10
af_Q2FWN4_397_512_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9792 399 511 1.10.560.10
af_Q9VMN5_430_540_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9765 405 512 1.10.560.10
af_Q9VPS5_431_541_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9752 411 516 1.10.560.10
ID Description Score Start End GO Terms
AF-A0A3C1CMQ7-F1-model_v4 Molecular chaperone GroEL 0.9858 212 357 GO:0042026
GO:0140662
AF-A0A3D3VY09-F1-model_v4 Molecular chaperone GroEL 0.9823 199 373 GO:0042026
GO:0140662
AF-A0A142EUW3-F1-model_v4 60 kDa chaperonin 0.9811 212 369 GO:0005524
GO:0042026
GO:0140662
AF-A0A3C1CMQ7-F1-model_v4 Molecular chaperone GroEL 0.9792 212 357 GO:0042026
GO:0140662
AF-A0A5P0JJU1-F1-model_v4 Molecular chaperone GroEL 0.9769 214 332 GO:0042026
GO:0140662

Feature Viewer

pLDDT pTM Quality
85.6 0.73 High
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Predicted Structure (AlphaFold2)

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