F355846

General Info

Members Datasets Scaffolds Average Seq Length
243 211 486 173

Family's Representative Sequence

Representative Sequence 3300044735|Ga0466968_0090824|Ga0466968_0090824_498_1019
Length 173
Sequence MTVPHTLLGLLEREPSHGYDLKRGYDALFGRDRPLPFGQVYATLARLARDGKVIATEEPGAGPERKRYVITSDGVSDVETWLAEPVAPEPHLQTVLFTKVVLALLSDRPADRYLDAQRAAHLQRMRELTELKRAGELVDALLADHALFHLEADLRWIELTLARLDALRTAVRS

Samples

Sample ID Description Type Environment
1 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
4 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
6 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
7 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
8 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
9 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
10 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
11 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
12 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
13 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
14 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
15 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
16 3300009984 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG Metagenome Rhizosphere
17 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
18 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
19 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
20 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
21 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
30 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
32 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
33 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
34 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
35 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
36 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
37 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
38 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
39 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
40 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
43 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
44 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
45 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
46 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
47 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
48 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
49 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
50 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
51 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
52 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
53 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
54 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
55 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
56 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
57 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
58 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
59 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
60 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
61 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
62 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
63 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
64 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
65 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
66 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
67 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
68 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
69 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
70 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
71 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
72 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
73 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
74 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
75 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
76 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
77 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
80 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
81 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
82 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
83 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
84 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
85 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
86 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
87 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
88 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
89 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
90 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
91 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
92 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
93 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
96 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
97 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
111 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
112 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
113 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
114 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
115 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
116 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
117 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
118 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
119 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
120 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
121 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
124 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
125 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
126 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
127 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
130 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
131 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
132 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
133 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
134 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
135 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
136 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
137 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
138 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
139 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
140 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
141 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
142 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
143 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
144 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
145 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
146 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
147 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
148 2643221578 Streptomyces sp. Root63 Isolate Unclassified
149 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
150 2643221670 Streptomyces sp. Root431 Isolate Unclassified
151 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
152 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
153 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
154 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
155 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
156 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
157 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
158 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
159 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
160 2808606448 Streptomyces sp. 193411 Isolate Unclassified
161 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
162 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
163 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
164 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
165 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
166 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
167 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
168 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
169 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
170 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
171 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
172 2862574272 Streptomyces sp. AcE210 Isolate Nodule
173 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
174 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
175 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
176 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
177 2867369537 Streptomyces sp. Z26 Isolate Unclassified
178 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
179 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
180 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
181 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
182 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
183 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
184 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
185 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
186 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
187 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
188 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
189 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
190 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
191 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
192 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
193 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
194 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
195 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
196 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
197 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
198 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
199 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
200 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
201 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
202 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
203 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
204 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
205 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
206 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
207 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
208 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
209 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
210 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere
211 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.78
Metatranscriptomes 0
Isolates 29.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.7
Nodule 0.82
Rhizoplane 1.23
Rhizosphere 78.19
Stem 0
Stem Tuber 0
Unclassified 0.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466968_0090824 3300044735 Bacteria 1353
2 Ga0070714_100738872 3300005435 Bacteria 951
3 Ga0070697_100912824 3300005536 Bacteria 779
4 Ga0081539_10000401 3300005985 Bacteria 92875
5 Ga0075365_10600026 3300006038 Bacteria 779
6 Ga0075366_10000249 3300006195 Bacteria 23668
7 Ga0075428_100114319 3300006844 Bacteria 2941
8 Ga0075431_100198408 3300006847 Bacteria 2054
9 Ga0075431_100908583 3300006847 Bacteria 850
10 Ga0068865_100566531 3300006881 Bacteria 956
11 Ga0075435_100038484 3300007076 Bacteria 3813
12 Ga0099795_10080057 3300007788 Bacteria 1248
13 Ga0111539_10067800 3300009094 Bacteria 4213
14 Ga0111539_10528187 3300009094 Bacteria 1375
15 Ga0111539_10843810 3300009094 Bacteria 1066
16 Ga0111539_10904891 3300009094 Bacteria 1026
17 Ga0105245_10345765 3300009098 Bacteria 1472
18 Ga0105245_10363280 3300009098 Bacteria 1437
19 Ga0114129_10396711 3300009147 Bacteria 1819
20 Ga0114129_11899728 3300009147 Bacteria 722
21 Ga0105249_10350286 3300009553 Bacteria 1496
22 Ga0105029_105210 3300009984 Bacteria 908
23 Ga0105246_10887358 3300011119 Bacteria 798
24 Ga0163162_11264780 3300013306 Bacteria 838
25 Ga0157380_12330557 3300014326 Bacteria 600
26 Ga0157376_11434350 3300014969 Bacteria 722
27 Ga0207693_10073166 3300025915 Bacteria 2683
28 Ga0207663_10223041 3300025916 Unclassified 1373
29 Ga0207664_11450849 3300025929 Bacteria 607
30 Ga0207661_11201880 3300025944 Bacteria 698
31 Ga0207712_10124437 3300025961 Bacteria 1956
32 Ga0207712_10247164 3300025961 Bacteria 1440
33 Ga0207668_10095790 3300025972 Bacteria 2191
34 Ga0207678_10001134 3300026067 Bacteria 24395
35 Ga0207708_10704507 3300026075 Bacteria 863
36 Ga0207428_10060400 3300027907 Bacteria 3004
37 Ga0268265_10730101 3300028380 Bacteria 960
38 Ga0265326_10009583 3300028558 Bacteria 2897
39 Ga0265334_10008208 3300028573 Bacteria 4444
40 Ga0265318_10096375 3300028577 Bacteria 1089
41 Ga0265322_10016427 3300028654 Bacteria 2136
42 Ga0265324_10082814 3300029957 Bacteria 1091
43 Ga0265325_10197103 3300031241 Bacteria 931
44 Ga0265316_10182808 3300031344 Bacteria 1560
45 Ga0307509_10004585 3300031507 Bacteria 19813
46 Ga0307413_10002414 3300031824 Bacteria 7587
47 Ga0307409_100030300 3300031995 Bacteria 3885
48 Ga0307409_101664600 3300031995 Bacteria 667
49 Ga0307416_100458400 3300032002 Bacteria 1329
50 Ga0307415_100424888 3300032126 Bacteria 1142
51 Ga0373934_0030880 3300035086 Bacteria 2096
52 Ga0373944_0098204 3300035089 Bacteria 986
53 Ga0373923_0002415 3300035111 Bacteria 5744
54 Ga0373936_0000476 3300035113 Bacteria 13537
55 Ga0373953_0009416 3300035117 Bacteria 3360
56 Ga0373956_0004555 3300035119 Bacteria 5533
57 Ga0373956_0032034 3300035119 Bacteria 2305
58 Ga0373957_0030759 3300035120 Bacteria 1968
59 Ga0373946_0000464 3300035171 Bacteria 13425
60 Ga0373927_0002961 3300035695 Bacteria 12330
61 Ga0373947_0218044 3300035725 Bacteria 1253
62 Ga0373937_0336925 3300036401 Bacteria 1428
63 Ga0373925_0088731 3300037068 Bacteria 2361
64 Ga0450923_036281 3300042125 Bacteria 1022
65 Ga0466961_0169038 3300044693 Bacteria 1360
66 Ga0466968_0180416 3300044735 Bacteria 982
67 Ga0466970_0062090 3300044765 Bacteria 2003
68 Ga0466959_0201190 3300045049 Bacteria 1387
69 Ga0466959_0603552 3300045049 Bacteria 738
70 Ga0495603_0001141 3300046455 Bacteria 15507
71 Ga0495629_0650300 3300046459 Bacteria 702
72 Ga0495651_0045297 3300046462 Bacteria 3408
73 Ga0495651_0124760 3300046462 Bacteria 1886
74 Ga0495653_0118722 3300046463 Bacteria 1888
75 Ga0495580_0008193 3300046472 Bacteria 8319
76 Ga0495582_0000701 3300046473 Bacteria 18474
77 Ga0495639_0006494 3300046475 Bacteria 5028
78 Ga0495664_0164544 3300046477 Bacteria 1346
79 Ga0495594_0081889 3300046499 Bacteria 1803
80 Ga0495606_0059778 3300046507 Bacteria 2444
81 Ga0495608_0127781 3300046511 Bacteria 1628
82 Ga0495618_0031755 3300046514 Bacteria 3306
83 Ga0495628_0008261 3300046516 Bacteria 8947
84 Ga0495628_0060657 3300046516 Bacteria 2967
85 Ga0495630_0006930 3300046517 Bacteria 8076
86 Ga0495652_0013433 3300046529 Bacteria 7370
87 Ga0495652_0032168 3300046529 Bacteria 4589
88 Ga0495652_0116024 3300046529 Bacteria 2144
89 Ga0495640_0075899 3300046533 Bacteria 2243
90 Ga0495586_0136983 3300046535 Bacteria 1372
91 Ga0495587_0049763 3300046536 Bacteria 2480
92 Ga0495645_0024773 3300046543 Bacteria 4353
93 Ga0495645_0039893 3300046543 Bacteria 3424
94 Ga0495668_0000534 3300046616 Bacteria 47251
95 Ga0495634_0006355 3300046642 Bacteria 8982
96 Ga0495634_0231328 3300046642 Bacteria 1137
97 Ga0495611_0123074 3300046648 Bacteria 1209
98 Ga0495625_0000475 3300046660 Bacteria 60449
99 Ga0495588_0091128 3300046674 Bacteria 1597
100 Ga0495657_0139275 3300046675 Bacteria 1513
101 Ga0495599_0113258 3300046678 Bacteria 1688
102 Ga0495623_0010775 3300046679 Bacteria 5919
103 Ga0495623_0148899 3300046679 Bacteria 1385
104 Ga0495646_0011146 3300046680 Bacteria 5709
105 Ga0495647_0012587 3300046681 Bacteria 2916
106 Ga0495669_0007600 3300046684 Bacteria 4548
107 Ga0495600_0003202 3300046809 Bacteria 9585
108 Ga0495581_0001074 3300047315 Bacteria 14855
109 Ga0495604_0021066 3300047317 Bacteria 5201
110 Ga0495674_0610656 3300047319 Bacteria 863
111 Ga0495687_042105 3300047443 Bacteria 1998
112 Ga0495675_0007116 3300047444 Bacteria 6885
113 Ga0495593_0020263 3300047673 Bacteria 3724
114 Ga0495614_0016277 3300048089 Bacteria 3238
115 Ga0495614_0223110 3300048089 Bacteria 857
116 Ga0495626_0000539 3300048091 Bacteria 37671
117 Ga0496102_1192783 3300048905 Bacteria 681
118 Ga0496108_0782375 3300048911 Bacteria 824
119 Ga0496109_0001340 3300048912 Bacteria 20347
120 Ga0501032_0305019 3300049569 Bacteria 1029
121 Ga0501036_0066097 3300049572 Bacteria 3059
122 Ga0501037_0194034 3300049573 Bacteria 1437
123 Ga0501038_0007951 3300049574 Bacteria 9770
124 Ga0501038_0459570 3300049574 Bacteria 978
125 Ga0501040_0078770 3300049576 Bacteria 2280
126 Ga0501041_0143319 3300049577 Bacteria 1490
127 Ga0501042_0032828 3300049578 Bacteria 3677
128 Ga0501046_0423338 3300049580 Bacteria 960
129 Ga0501048_0028190 3300049582 Bacteria 4077
130 Ga0501068_0055444 3300049584 Bacteria 2401
131 Ga0501069_0053934 3300049585 Bacteria 2239
132 Ga0501071_0030726 3300049587 Bacteria 3800
133 Ga0501071_1138148 3300049587 Bacteria 603
134 Ga0501072_0287801 3300049588 Bacteria 1306
135 Ga0501072_0406134 3300049588 Bacteria 1080
136 Ga0501073_0889032 3300049589 Bacteria 613
137 Ga0501074_0070269 3300049590 Bacteria 2517
138 Ga0501075_0196683 3300049591 Bacteria 1537
139 Ga0501076_0287740 3300049592 Bacteria 1346
140 Ga0501077_0066214 3300049593 Bacteria 2291
141 Ga0501080_0022748 3300049742 Bacteria 5806
142 Ga0501081_0019104 3300049743 Bacteria 4558
143 Ga0501081_0075401 3300049743 Bacteria 2355
144 Ga0501035_0059819 3300049822 Bacteria 3393
145 Ga0501044_0010574 3300049823 Bacteria 10011
146 Ga0501045_0217330 3300049824 Bacteria 1423
147 nmdc:mga00v17_153269_c1 3300050491 Unclassified 1481
148 nmdc:mga0k408_46_c3 3300050493 Bacteria 36804
149 nmdc:mga09592_38263_c1 3300050508 Bacteria 4026
150 nmdc:mga0qj67_196682_c1 3300050509 Bacteria 1638
151 nmdc:mga06r32_1685_c1 3300050510 Bacteria 19901
152 nmdc:mga06r32_382546_c1 3300050510 Bacteria 1390
153 nmdc:mga06r32_800221_c1 3300050510 Bacteria 903
154 nmdc:mga06r32_844671_c1 3300050510 Bacteria 874
155 nmdc:mga08y16_44640_c1 3300050511 Bacteria 4644
156 Ga0495601_0004806 3300053077 Bacteria 7831
157 Ga0495601_0009024 3300053077 Bacteria 5886
158 Ga0495601_0016114 3300053077 Bacteria 4525
159 Ga0495601_0131756 3300053077 Bacteria 1628
160 Ga0495612_0000998 3300053078 Bacteria 11638
161 Ga0495612_0004930 3300053078 Bacteria 5522
162 Ga0495595_0001768 3300053084 Bacteria 8440
163 Ga0495619_0001063 3300053085 Bacteria 18014
164 Ga0500566_0003761 3300053094 Bacteria 9063
165 Ga0500660_109071 3300053100 Bacteria 1185
166 Ga0500608_261532 3300053122 Bacteria 668
167 Ga0500568_0000039 3300053139 Bacteria 134018
168 Ga0500616_0079237 3300053153 Bacteria 1655
169 Ga0501084_0107937 3300054114 Bacteria 2338
170 Ga0501082_0674769 3300060353 Bacteria 904
171 Ga0466962_0371348 3300061719 Bacteria 714
172 Ga0530510_0042274 3300061734 Bacteria 3292
173 2547410916 2547132111 Bacteria 8013147
174 2585316252 2582581314 Bacteria 11452267
175 2586064095 2585427649 Bacteria 9053857
176 2616696983 2616644814 Bacteria 11555299
177 2616900253 2616644941 Bacteria 8510691
178 2643903273 2643221578 Bacteria 9213798
179 2643941650 2643221587 Bacteria 7586415
180 2644386578 2643221670 Bacteria 6497041
181 2644404216 2643221673 Bacteria 9196637
182 2644428734 2643221677 Bacteria 7584031
183 2644438568 2643221678 Bacteria 9540101
184 2644439680 2643221678 Bacteria 9540101
185 2753069736 2751185734 Bacteria 8863695
186 2784590065 2784132148 Bacteria 8627943
187 2791913870 2791354901 Bacteria 8322202
188 2804845111 2802429296 Bacteria 7227771
189 2808843701 2808606359 Bacteria 9866990
190 2808913255 2808606375 Bacteria 9466072
191 2809233762 2808606448 Bacteria 8656184
192 2809586659 2808606522 Bacteria 9488490
193 2812356331 2811994879 Bacteria 9313447
194 2812479072 2811994917 Bacteria 7761064
195 2832008360 2832004796 Bacteria 6538017
196 2852640335 2852635781 Bacteria 8251373
197 2858905458 2858902515 Bacteria 7086037
198 2861522561 2861520306 Bacteria 8348283
199 2862287393 2862281513 Bacteria 9621493
200 2862295926 2862290372 Bacteria 7471434
201 2862389043 2862382967 Bacteria 10317375
202 2862513155 2862507626 Bacteria 9425308
203 2862577838 2862574272 Bacteria 10567477
204 2862708302 2862705112 Bacteria 6563286
205 2863408271 2863404153 Bacteria 9672205
206 2866069614 2866065130 Bacteria 6518152
207 2867350295 2867346516 Bacteria 7608576
208 2867373579 2867369537 Bacteria 6501581
209 2870727751 2870721527 Bacteria 9689237
210 2873154399 2873151551 Bacteria 8625867
211 2877679428 2877676314 Bacteria 9512378
212 2887479569 2887478801 Bacteria 8972725
213 2891331688 2891326441 Bacteria 6439512
214 2912718040 2912715099 Bacteria 9460473
215 2912730485 2912723979 Bacteria 8557534
216 2915768686 2915768154 Bacteria 8424322
217 2918506178 2918501144 Bacteria 8668083
218 2919470559 2919468124 Bacteria 9133025
219 2935391662 2935390628 Bacteria 7043367
220 2946048245 2946045630 Bacteria 8527308
221 2946069527 2946064051 Bacteria 8957905
222 2946078544 2946072368 Bacteria 8999607
223 2947227302 2947224130 Bacteria 9938529
224 2954010007 2954002825 Bacteria 9173742
225 2990048400 2990044586 Bacteria 6603797
226 2990063538 2990059506 Bacteria 9321252
227 2997601113 2997600082 Bacteria 9896405
228 2997607025 2997600082 Bacteria 9896405
229 3006324004 3006321560 Bacteria 8247479
230 3006429571 3006425503 Bacteria 6491253
231 3006498724 3006493962 Bacteria 8825450
232 8003856857 8003856774 Bacteria 7675274
233 8008491282 8008485437 Bacteria 7198341
234 8008577476 8008574985 Bacteria 7815457
235 8023627274 8023623736 Bacteria 8593882
236 8025415349 8025413630 Bacteria 7014048
237 8025530611 8025524527 Bacteria 7197316
238 8025538178 8025530807 Bacteria 8495698
239 8033686706 8033684223 Bacteria 6906479
240 8047718505 8047710418 Bacteria 11023148
241 8054166647 8054160619 Bacteria 7783213
242 8056210469 8056207758 Bacteria 8639239
243 8056834882 8056829672 Bacteria 9045328
244 Ga0466968_0090824
245 Ga0070714_100738872
246 Ga0070697_100912824
247 Ga0081539_10000401
248 Ga0075365_10600026
249 Ga0075366_10000249
250 Ga0075428_100114319
251 Ga0075431_100198408
252 Ga0075431_100908583
253 Ga0068865_100566531
254 Ga0075435_100038484
255 Ga0099795_10080057
256 Ga0111539_10067800
257 Ga0111539_10528187
258 Ga0111539_10843810
259 Ga0111539_10904891
260 Ga0105245_10345765
261 Ga0105245_10363280
262 Ga0114129_10396711
263 Ga0114129_11899728
264 Ga0105249_10350286
265 Ga0105029_105210
266 Ga0105246_10887358
267 Ga0163162_11264780
268 Ga0157380_12330557
269 Ga0157376_11434350
270 Ga0207693_10073166
271 Ga0207663_10223041
272 Ga0207664_11450849
273 Ga0207661_11201880
274 Ga0207712_10124437
275 Ga0207712_10247164
276 Ga0207668_10095790
277 Ga0207678_10001134
278 Ga0207708_10704507
279 Ga0207428_10060400
280 Ga0268265_10730101
281 Ga0265326_10009583
282 Ga0265334_10008208
283 Ga0265318_10096375
284 Ga0265322_10016427
285 Ga0265324_10082814
286 Ga0265325_10197103
287 Ga0265316_10182808
288 Ga0307509_10004585
289 Ga0307413_10002414
290 Ga0307409_100030300
291 Ga0307409_101664600
292 Ga0307416_100458400
293 Ga0307415_100424888
294 Ga0373934_0030880
295 Ga0373944_0098204
296 Ga0373923_0002415
297 Ga0373936_0000476
298 Ga0373953_0009416
299 Ga0373956_0004555
300 Ga0373956_0032034
301 Ga0373957_0030759
302 Ga0373946_0000464
303 Ga0373927_0002961
304 Ga0373947_0218044
305 Ga0373937_0336925
306 Ga0373925_0088731
307 Ga0450923_036281
308 Ga0466961_0169038
309 Ga0466968_0180416
310 Ga0466970_0062090
311 Ga0466959_0201190
312 Ga0466959_0603552
313 Ga0495603_0001141
314 Ga0495629_0650300
315 Ga0495651_0045297
316 Ga0495651_0124760
317 Ga0495653_0118722
318 Ga0495580_0008193
319 Ga0495582_0000701
320 Ga0495639_0006494
321 Ga0495664_0164544
322 Ga0495594_0081889
323 Ga0495606_0059778
324 Ga0495608_0127781
325 Ga0495618_0031755
326 Ga0495628_0008261
327 Ga0495628_0060657
328 Ga0495630_0006930
329 Ga0495652_0013433
330 Ga0495652_0032168
331 Ga0495652_0116024
332 Ga0495640_0075899
333 Ga0495586_0136983
334 Ga0495587_0049763
335 Ga0495645_0024773
336 Ga0495645_0039893
337 Ga0495668_0000534
338 Ga0495634_0006355
339 Ga0495634_0231328
340 Ga0495611_0123074
341 Ga0495625_0000475
342 Ga0495588_0091128
343 Ga0495657_0139275
344 Ga0495599_0113258
345 Ga0495623_0010775
346 Ga0495623_0148899
347 Ga0495646_0011146
348 Ga0495647_0012587
349 Ga0495669_0007600
350 Ga0495600_0003202
351 Ga0495581_0001074
352 Ga0495604_0021066
353 Ga0495674_0610656
354 Ga0495687_042105
355 Ga0495675_0007116
356 Ga0495593_0020263
357 Ga0495614_0016277
358 Ga0495614_0223110
359 Ga0495626_0000539
360 Ga0496102_1192783
361 Ga0496108_0782375
362 Ga0496109_0001340
363 Ga0501032_0305019
364 Ga0501036_0066097
365 Ga0501037_0194034
366 Ga0501038_0007951
367 Ga0501038_0459570
368 Ga0501040_0078770
369 Ga0501041_0143319
370 Ga0501042_0032828
371 Ga0501046_0423338
372 Ga0501048_0028190
373 Ga0501068_0055444
374 Ga0501069_0053934
375 Ga0501071_0030726
376 Ga0501071_1138148
377 Ga0501072_0287801
378 Ga0501072_0406134
379 Ga0501073_0889032
380 Ga0501074_0070269
381 Ga0501075_0196683
382 Ga0501076_0287740
383 Ga0501077_0066214
384 Ga0501080_0022748
385 Ga0501081_0019104
386 Ga0501081_0075401
387 Ga0501035_0059819
388 Ga0501044_0010574
389 Ga0501045_0217330
390 nmdc:mga00v17_153269_c1
391 nmdc:mga0k408_46_c3
392 nmdc:mga09592_38263_c1
393 nmdc:mga0qj67_196682_c1
394 nmdc:mga06r32_1685_c1
395 nmdc:mga06r32_382546_c1
396 nmdc:mga06r32_800221_c1
397 nmdc:mga06r32_844671_c1
398 nmdc:mga08y16_44640_c1
399 Ga0495601_0004806
400 Ga0495601_0009024
401 Ga0495601_0016114
402 Ga0495601_0131756
403 Ga0495612_0000998
404 Ga0495612_0004930
405 Ga0495595_0001768
406 Ga0495619_0001063
407 Ga0500566_0003761
408 Ga0500660_109071
409 Ga0500608_261532
410 Ga0500568_0000039
411 Ga0500616_0079237
412 Ga0501084_0107937
413 Ga0501082_0674769
414 Ga0466962_0371348
415 Ga0530510_0042274
416 2547410916
417 2585316252
418 2586064095
419 2616696983
420 2616900253
421 2643903273
422 2643941650
423 2644386578
424 2644404216
425 2644428734
426 2644438568
427 2644439680
428 2753069736
429 2784590065
430 2791913870
431 2804845111
432 2808843701
433 2808913255
434 2809233762
435 2809586659
436 2812356331
437 2812479072
438 2832008360
439 2852640335
440 2858905458
441 2861522561
442 2862287393
443 2862295926
444 2862389043
445 2862513155
446 2862577838
447 2862708302
448 2863408271
449 2866069614
450 2867350295
451 2867373579
452 2870727751
453 2873154399
454 2877679428
455 2887479569
456 2891331688
457 2912718040
458 2912730485
459 2915768686
460 2918506178
461 2919470559
462 2935391662
463 2946048245
464 2946069527
465 2946078544
466 2947227302
467 2954010007
468 2990048400
469 2990063538
470 2997601113
471 2997607025
472 3006324004
473 3006429571
474 3006498724
475 8003856857
476 8008491282
477 8008577476
478 8023627274
479 8025415349
480 8025530611
481 8025538178
482 8033686706
483 8047718505
484 8054166647
485 8056210469
486 8056834882

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

7

80

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3elk-assembly1.cif.gz_A crystal structure of putative transcriptional regulator ta0346 from thermoplasma acidophilum 0.9129 9 86
5h20-assembly1.cif.gz_A-2 x-ray structure of padr-like transcription factor from bacteroid fragilis 0.9002 8 87
1xma-assembly1.cif.gz_A structure of a transcriptional regulator from clostridium thermocellum cth-833 0.8931 8 87
3hhh-assembly1.cif.gz_A crystal structure of transcriptional regulator, a member of padr family, from enterococcus faecalis v583 0.8865 8 87
6abt-assembly1.cif.gz_A crystal structure of transcription factor from listeria monocytogenes 0.8849 9 87
ID Description Score Start End Superfamily
1ulyA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9228 9 76 1.10.10.10
5h20A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9002 8 87 1.10.10.10
1xmaA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8931 8 87 1.10.10.10
3f3xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.881 9 86 1.10.10.10
af_I6X7F9_1_101_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.879 8 86 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1Q2CT39-F1-model_v4 PadR family transcriptional regulator 0.9687 6 177
AF-A0A1Q2CT39-F1-model_v4 PadR family transcriptional regulator 0.9578 6 177
AF-A0A7W0J895-F1-model_v4 PadR family transcriptional regulator 0.9216 6 92
AF-A0A1F9A4M1-F1-model_v4 Transcription regulator PadR N-terminal domain-containing protein 0.9202 6 168
AF-A0A0N8WAM2-F1-model_v4 Transcription regulator PadR N-terminal domain-containing protein 0.9195 9 87

Map