F355569

General Info

Members Datasets Scaffolds Average Seq Length
243 114 486 193

Family's Representative Sequence

Representative Sequence 3300009551|Ga0105238_10043181|Ga0105238_100431813
Length 219
Sequence MWWYSRTSLIPILLGYRSNNLDHSRTLVYSSMAGNSEPPDYDLAERIALTEPSQVRALSHPLRTTILHLLHERAATVNELAQAVGRPKSTVAHHVKVLTEAGLLRVVRTRRVRAIDERFYGRTARLFYVSVARTPEGEDMPRDFNDFEVAASESVDAFLAGKLWGFIRHARITEAEASAFWERMAELVGEFDRLPRSGDTTYGFAVGIYPTDLPTLPTA

Samples

Sample ID Description Type Environment
1 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
40 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
41 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
42 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
43 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
44 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
68 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
72 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
73 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
74 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
75 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
76 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
77 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
78 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
79 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
80 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
81 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
82 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
83 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
84 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
85 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
86 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
87 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
88 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
89 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
90 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
91 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
92 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
93 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
94 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
95 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
96 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
97 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
98 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
101 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
102 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
105 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
108 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
109 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
110 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
111 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
112 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
113 2643221711 Terrabacter sp. Root85 Isolate Unclassified
114 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.65
Metatranscriptomes 4.12
Isolates 1.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 16.05
Rhizosphere 83.54
Stem 0
Stem Tuber 0
Unclassified 2.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105238_10043181 3300009551 Bacteria 4562
2 JGI25407J50210_10017650 3300003373 Bacteria 1853
3 Ga0070658_10034770 3300005327 Bacteria 4055
4 Ga0070658_10084166 3300005327 Bacteria 2615
5 Ga0070683_100021459 3300005329 Bacteria 5766
6 Ga0070683_100055571 3300005329 Bacteria 3674
7 Ga0070683_100056491 3300005329 Bacteria 3646
8 Ga0070683_100088723 3300005329 Bacteria 2901
9 Ga0070683_100213720 3300005329 Bacteria 1832
10 Ga0070683_100273436 3300005329 Bacteria 1607
11 Ga0070680_100041613 3300005336 Bacteria 3725
12 Ga0070680_100159425 3300005336 Bacteria 1895
13 Ga0070680_100247483 3300005336 Bacteria 1507
14 Ga0068868_100387607 3300005338 Bacteria 1203
15 Ga0070660_100009701 3300005339 Bacteria 6782
16 Ga0070660_100103818 3300005339 Bacteria 2254
17 Ga0070660_100231263 3300005339 Bacteria 1504
18 Ga0070661_100005276 3300005344 Bacteria 8904
19 Ga0070661_100008027 3300005344 Bacteria 7290
20 Ga0070661_100021978 3300005344 Bacteria 4562
21 Ga0070671_100012675 3300005355 Bacteria 6795
22 Ga0070659_100035608 3300005366 Bacteria 3877
23 Ga0070659_100106099 3300005366 Bacteria 2264
24 Ga0070659_100236924 3300005366 Bacteria 1509
25 Ga0070708_100210483 3300005445 Bacteria 1822
26 Ga0070681_10005137 3300005458 Bacteria 12624
27 Ga0070681_10025325 3300005458 Bacteria 5968
28 Ga0070681_10035194 3300005458 Bacteria 5030
29 Ga0070681_10197601 3300005458 Bacteria 1930
30 Ga0070706_100094333 3300005467 Bacteria 2777
31 Ga0070707_100018440 3300005468 Bacteria 6565
32 Ga0070698_100008232 3300005471 Bacteria 11279
33 Ga0070698_100829388 3300005471 Bacteria 869
34 Ga0070679_100006555 3300005530 Bacteria 10846
35 Ga0070679_100017029 3300005530 Bacteria 7026
36 Ga0070679_100025721 3300005530 Bacteria 5776
37 Ga0070679_100333220 3300005530 Bacteria 1466
38 Ga0070679_100494365 3300005530 Bacteria 1167
39 Ga0070684_100001383 3300005535 Bacteria 17420
40 Ga0070684_100044974 3300005535 Bacteria 3821
41 Ga0070684_100050161 3300005535 Bacteria 3624
42 Ga0070684_100105804 3300005535 Bacteria 2518
43 Ga0068853_101237402 3300005539 Bacteria 721
44 Ga0070696_100050256 3300005546 Bacteria 2898
45 Ga0070665_100015891 3300005548 Bacteria 7553
46 Ga0068855_100016975 3300005563 Bacteria 8755
47 Ga0068855_100054631 3300005563 Bacteria 4693
48 Ga0068855_100060630 3300005563 Bacteria 4424
49 Ga0068855_100121130 3300005563 Bacteria 2994
50 Ga0068855_100149344 3300005563 Bacteria 2657
51 Ga0068857_100009257 3300005577 Bacteria 8544
52 Ga0068857_100101272 3300005577 Bacteria 2585
53 Ga0068857_100557265 3300005577 Bacteria 1080
54 Ga0068856_100103189 3300005614 Bacteria 2845
55 Ga0068852_100003999 3300005616 Bacteria 10364
56 Ga0068852_100771176 3300005616 Bacteria 975
57 Ga0068852_101448646 3300005616 Bacteria 709
58 Ga0081455_10007851 3300005937 Bacteria 11173
59 Ga0081455_10317427 3300005937 Bacteria 1111
60 Ga0081538_10038097 3300005981 Bacteria 3107
61 Ga0081538_10058035 3300005981 Bacteria 2249
62 Ga0081538_10168776 3300005981 Bacteria 959
63 Ga0105240_10155603 3300009093 Bacteria 2719
64 Ga0105240_10664168 3300009093 Bacteria 1141
65 Ga0111539_10083613 3300009094 Bacteria 3753
66 Ga0111539_10540139 3300009094 Bacteria 1358
67 Ga0105245_10629589 3300009098 Bacteria 1102
68 Ga0105245_10863761 3300009098 Bacteria 945
69 Ga0114129_10139074 3300009147 Bacteria 3330
70 Ga0114129_10467853 3300009147 Bacteria 1651
71 Ga0114129_10505299 3300009147 Bacteria 1578
72 Ga0105237_10004388 3300009545 Bacteria 16356
73 Ga0105237_10014918 3300009545 Bacteria 8103
74 Ga0105238_10041927 3300009551 Bacteria 4636
75 Ga0105239_10018668 3300010375 Bacteria 7660
76 Ga0157370_10017376 3300013104 Bacteria 7260
77 Ga0157370_10034299 3300013104 Bacteria 4944
78 Ga0157370_10041914 3300013104 Bacteria 4413
79 Ga0157369_10032954 3300013105 Bacteria 5694
80 Ga0157369_10033792 3300013105 Bacteria 5617
81 Ga0157369_10120730 3300013105 Bacteria 2781
82 Ga0157374_10339460 3300013296 Bacteria 1491
83 Ga0157372_10026957 3300013307 Bacteria 6255
84 Ga0157372_10100029 3300013307 Bacteria 3308
85 Ga0157372_10147202 3300013307 Bacteria 2716
86 Ga0157372_10188229 3300013307 Bacteria 2390
87 Ga0157372_11015173 3300013307 Bacteria 961
88 Ga0157375_10075729 3300013308 Bacteria 3390
89 Ga0163163_11223041 3300014325 Bacteria 814
90 Ga0182007_10265350 3300015262 Bacteria 620
91 Ga0197907_10969763 3300020069 Bacteria 3900
92 Ga0197907_11331884 3300020069 Bacteria 783
93 Ga0206356_10536051 3300020070 Bacteria 2957
94 Ga0206356_10787093 3300020070 Bacteria 1456
95 Ga0206354_10439875 3300020081 Bacteria 1057
96 Ga0206354_10644055 3300020081 Bacteria 1972
97 Ga0206354_11242338 3300020081 Bacteria 1644
98 Ga0206353_10393230 3300020082 Bacteria 2799
99 Ga0206353_11031646 3300020082 Bacteria 1013
100 Ga0224712_10133407 3300022467 Bacteria 1086
101 Ga0207705_10053076 3300025909 Bacteria 2919
102 Ga0207705_10082826 3300025909 Bacteria 2340
103 Ga0207654_10068941 3300025911 Bacteria 2094
104 Ga0207654_10098186 3300025911 Bacteria 1799
105 Ga0207707_10023253 3300025912 Bacteria 5422
106 Ga0207707_10042116 3300025912 Bacteria 3987
107 Ga0207707_10051355 3300025912 Bacteria 3590
108 Ga0207707_10260271 3300025912 Bacteria 1505
109 Ga0207695_10183286 3300025913 Bacteria 2014
110 Ga0207695_10255366 3300025913 Bacteria 1652
111 Ga0207695_10400484 3300025913 Bacteria 1257
112 Ga0207671_10369612 3300025914 Bacteria 1139
113 Ga0207660_10022433 3300025917 Bacteria 4253
114 Ga0207660_10245477 3300025917 Bacteria 1412
115 Ga0207657_10000271 3300025919 Bacteria 55055
116 Ga0207657_10000889 3300025919 Bacteria 31610
117 Ga0207657_10009547 3300025919 Bacteria 9740
118 Ga0207657_10037977 3300025919 Bacteria 4294
119 Ga0207657_10186135 3300025919 Bacteria 1677
120 Ga0207649_10127573 3300025920 Bacteria 1724
121 Ga0207649_10223643 3300025920 Bacteria 1342
122 Ga0207649_10728481 3300025920 Bacteria 770
123 Ga0207649_10730896 3300025920 Bacteria 769
124 Ga0207652_10006529 3300025921 Bacteria 9402
125 Ga0207652_10014332 3300025921 Bacteria 6420
126 Ga0207652_10178361 3300025921 Bacteria 1908
127 Ga0207652_10273226 3300025921 Bacteria 1524
128 Ga0207646_10023182 3300025922 Bacteria 5704
129 Ga0207687_10184921 3300025927 Bacteria 1617
130 Ga0207644_10106706 3300025931 Bacteria 2112
131 Ga0207690_10095289 3300025932 Bacteria 2114
132 Ga0207690_10116780 3300025932 Bacteria 1931
133 Ga0207661_10052486 3300025944 Bacteria 3258
134 Ga0207661_10078998 3300025944 Bacteria 2711
135 Ga0207661_10117063 3300025944 Bacteria 2263
136 Ga0207661_10171931 3300025944 Bacteria 1886
137 Ga0207661_10678441 3300025944 Bacteria 947
138 Ga0207667_10033026 3300025949 Bacteria 5569
139 Ga0207667_10049388 3300025949 Bacteria 4443
140 Ga0207667_10166235 3300025949 Bacteria 2268
141 Ga0207677_11350766 3300026023 Unclassified 655
142 Ga0207678_10301258 3300026067 Bacteria 1378
143 Ga0207678_10340467 3300026067 Bacteria 1292
144 Ga0207674_10025720 3300026116 Bacteria 6268
145 Ga0207674_10029058 3300026116 Bacteria 5827
146 Ga0207698_10409342 3300026142 Bacteria 1298
147 Ga0207698_11064885 3300026142 Bacteria 821
148 Ga0307412_10068282 3300031911 Bacteria 2417
149 Ga0307409_100029514 3300031995 Bacteria 3926
150 Ga0307409_100281524 3300031995 Bacteria 1537
151 Ga0307409_100586231 3300031995 Bacteria 1100
152 Ga0307416_100109447 3300032002 Bacteria 2430
153 Ga0307411_10111785 3300032005 Unclassified 1957
154 Ga0307415_100017207 3300032126 Bacteria 4328
155 Ga0307415_100551976 3300032126 Bacteria 1017
156 Ga0395898_0776071 3300037466 Bacteria 899
157 Ga0395898_1053176 3300037466 Unclassified 748
158 Ga0395901_0166405 3300038443 Bacteria 2315
159 Ga0395901_0455350 3300038443 Bacteria 1308
160 Ga0439448_0018631 3300042005 Bacteria 2131
161 Ga0450918_035933 3300042531 Unclassified 882
162 Ga0466969_0045116 3300044656 Bacteria 2189
163 Ga0466961_0017190 3300044693 Bacteria 4646
164 Ga0466961_0477237 3300044693 Bacteria 754
165 Ga0466963_0002435 3300044694 Bacteria 10409
166 Ga0466963_0021169 3300044694 Bacteria 4098
167 Ga0466963_0022433 3300044694 Bacteria 3998
168 Ga0466963_0147549 3300044694 Unclassified 1633
169 Ga0466963_0616927 3300044694 Bacteria 766
170 Ga0466963_0659089 3300044694 Bacteria 739
171 Ga0466968_0195149 3300044735 Bacteria 946
172 Ga0466957_0012038 3300044842 Bacteria 5001
173 Ga0466959_0033697 3300045049 Bacteria 3788
174 Ga0466959_0176623 3300045049 Bacteria 1495
175 Ga0466958_0091431 3300045836 Bacteria 1884
176 Ga0466958_0098690 3300045836 Bacteria 1814
177 Ga0466958_0260934 3300045836 Bacteria 1109
178 Ga0466967_0006683 3300045976 Bacteria 8200
179 Ga0466967_0065790 3300045976 Bacteria 3228
180 Ga0466967_0220118 3300045976 Bacteria 1803
181 Ga0495618_0193351 3300046514 Bacteria 1289
182 Ga0495635_0466886 3300046663 Bacteria 833
183 Ga0495581_0215255 3300047315 Bacteria 1123
184 Ga0496100_0014008 3300048903 Bacteria 4644
185 Ga0496100_0168223 3300048903 Bacteria 1576
186 Ga0496100_0188815 3300048903 Bacteria 1495
187 Ga0496100_0679198 3300048903 Bacteria 803
188 Ga0496101_0007131 3300048904 Bacteria 7229
189 Ga0496101_0295692 3300048904 Bacteria 1267
190 Ga0496102_0004604 3300048905 Bacteria 11670
191 Ga0496102_0065067 3300048905 Bacteria 3341
192 Ga0496102_0104124 3300048905 Bacteria 2639
193 Ga0496103_0012442 3300048906 Bacteria 5047
194 Ga0496104_0008898 3300048907 Bacteria 8922
195 Ga0496104_0013349 3300048907 Bacteria 7400
196 Ga0496104_0633410 3300048907 Bacteria 978
197 Ga0496105_0013027 3300048908 Bacteria 6589
198 Ga0496105_0054608 3300048908 Bacteria 3298
199 Ga0496105_0084278 3300048908 Bacteria 2625
200 Ga0496105_0217899 3300048908 Bacteria 1554
201 Ga0496105_0763529 3300048908 Bacteria 738
202 Ga0496106_0050792 3300048909 Bacteria 3125
203 Ga0496106_0066087 3300048909 Bacteria 2754
204 Ga0496107_0055942 3300048910 Bacteria 2850
205 Ga0496108_0010361 3300048911 Bacteria 7569
206 Ga0496108_0120193 3300048911 Bacteria 2253
207 Ga0496109_0007263 3300048912 Bacteria 9366
208 Ga0496109_0032815 3300048912 Bacteria 4669
209 Ga0496109_0182509 3300048912 Bacteria 1971
210 Ga0496109_0185775 3300048912 Bacteria 1953
211 Ga0496109_0364224 3300048912 Bacteria 1366
212 Ga0496110_0040262 3300048913 Bacteria 4072
213 Ga0496110_0047428 3300048913 Bacteria 3762
214 Ga0496111_0011934 3300048914 Bacteria 5871
215 Ga0496111_0017539 3300048914 Bacteria 4950
216 Ga0496111_0240012 3300048914 Unclassified 1346
217 Ga0496112_0015933 3300048915 Bacteria 7025
218 Ga0496112_0069096 3300048915 Bacteria 3490
219 Ga0496113_0025700 3300048916 Bacteria 4201
220 Ga0496113_0455821 3300048916 Bacteria 1028
221 Ga0496114_0016273 3300048917 Bacteria 5990
222 Ga0496114_0275858 3300048917 Bacteria 1482
223 Ga0501043_0247187 3300049579 Bacteria 1375
224 Ga0501067_0013419 3300049583 Bacteria 4537
225 Ga0501068_0003611 3300049584 Bacteria 8363
226 Ga0501069_0000872 3300049585 Bacteria 14359
227 Ga0501069_0053396 3300049585 Bacteria 2250
228 Ga0501069_0054391 3300049585 Bacteria 2230
229 Ga0501071_0068632 3300049587 Bacteria 2580
230 Ga0501072_0074262 3300049588 Bacteria 2689
231 Ga0501081_0699084 3300049743 Bacteria 761
232 Ga0501044_0234178 3300049823 Bacteria 1783
233 nmdc:mga05p37_1078294_c1 3300050507 Bacteria 844
234 nmdc:mga09592_108014_c1 3300050508 Bacteria 2386
235 nmdc:mga0a205_294902_c1 3300050515 Bacteria 1495
236 Ga0466962_0045440 3300061719 Bacteria 2099
237 Ga0466962_0122565 3300061719 Bacteria 1255
238 Ga0530510_0006662 3300061734 Bacteria 8056
239 Ga0530510_0109839 3300061734 Bacteria 2019
240 Ga0530510_0258493 3300061734 Bacteria 1298
241 2515857752 2515154155 Bacteria 7985436
242 2644609958 2643221711 Bacteria 4865335
243 2819667885 2818991458 Bacteria 4794049
244 Ga0105238_10043181
245 JGI25407J50210_10017650
246 Ga0070658_10034770
247 Ga0070658_10084166
248 Ga0070683_100021459
249 Ga0070683_100055571
250 Ga0070683_100056491
251 Ga0070683_100088723
252 Ga0070683_100213720
253 Ga0070683_100273436
254 Ga0070680_100041613
255 Ga0070680_100159425
256 Ga0070680_100247483
257 Ga0068868_100387607
258 Ga0070660_100009701
259 Ga0070660_100103818
260 Ga0070660_100231263
261 Ga0070661_100005276
262 Ga0070661_100008027
263 Ga0070661_100021978
264 Ga0070671_100012675
265 Ga0070659_100035608
266 Ga0070659_100106099
267 Ga0070659_100236924
268 Ga0070708_100210483
269 Ga0070681_10005137
270 Ga0070681_10025325
271 Ga0070681_10035194
272 Ga0070681_10197601
273 Ga0070706_100094333
274 Ga0070707_100018440
275 Ga0070698_100008232
276 Ga0070698_100829388
277 Ga0070679_100006555
278 Ga0070679_100017029
279 Ga0070679_100025721
280 Ga0070679_100333220
281 Ga0070679_100494365
282 Ga0070684_100001383
283 Ga0070684_100044974
284 Ga0070684_100050161
285 Ga0070684_100105804
286 Ga0068853_101237402
287 Ga0070696_100050256
288 Ga0070665_100015891
289 Ga0068855_100016975
290 Ga0068855_100054631
291 Ga0068855_100060630
292 Ga0068855_100121130
293 Ga0068855_100149344
294 Ga0068857_100009257
295 Ga0068857_100101272
296 Ga0068857_100557265
297 Ga0068856_100103189
298 Ga0068852_100003999
299 Ga0068852_100771176
300 Ga0068852_101448646
301 Ga0081455_10007851
302 Ga0081455_10317427
303 Ga0081538_10038097
304 Ga0081538_10058035
305 Ga0081538_10168776
306 Ga0105240_10155603
307 Ga0105240_10664168
308 Ga0111539_10083613
309 Ga0111539_10540139
310 Ga0105245_10629589
311 Ga0105245_10863761
312 Ga0114129_10139074
313 Ga0114129_10467853
314 Ga0114129_10505299
315 Ga0105237_10004388
316 Ga0105237_10014918
317 Ga0105238_10041927
318 Ga0105239_10018668
319 Ga0157370_10017376
320 Ga0157370_10034299
321 Ga0157370_10041914
322 Ga0157369_10032954
323 Ga0157369_10033792
324 Ga0157369_10120730
325 Ga0157374_10339460
326 Ga0157372_10026957
327 Ga0157372_10100029
328 Ga0157372_10147202
329 Ga0157372_10188229
330 Ga0157372_11015173
331 Ga0157375_10075729
332 Ga0163163_11223041
333 Ga0182007_10265350
334 Ga0197907_10969763
335 Ga0197907_11331884
336 Ga0206356_10536051
337 Ga0206356_10787093
338 Ga0206354_10439875
339 Ga0206354_10644055
340 Ga0206354_11242338
341 Ga0206353_10393230
342 Ga0206353_11031646
343 Ga0224712_10133407
344 Ga0207705_10053076
345 Ga0207705_10082826
346 Ga0207654_10068941
347 Ga0207654_10098186
348 Ga0207707_10023253
349 Ga0207707_10042116
350 Ga0207707_10051355
351 Ga0207707_10260271
352 Ga0207695_10183286
353 Ga0207695_10255366
354 Ga0207695_10400484
355 Ga0207671_10369612
356 Ga0207660_10022433
357 Ga0207660_10245477
358 Ga0207657_10000271
359 Ga0207657_10000889
360 Ga0207657_10009547
361 Ga0207657_10037977
362 Ga0207657_10186135
363 Ga0207649_10127573
364 Ga0207649_10223643
365 Ga0207649_10728481
366 Ga0207649_10730896
367 Ga0207652_10006529
368 Ga0207652_10014332
369 Ga0207652_10178361
370 Ga0207652_10273226
371 Ga0207646_10023182
372 Ga0207687_10184921
373 Ga0207644_10106706
374 Ga0207690_10095289
375 Ga0207690_10116780
376 Ga0207661_10052486
377 Ga0207661_10078998
378 Ga0207661_10117063
379 Ga0207661_10171931
380 Ga0207661_10678441
381 Ga0207667_10033026
382 Ga0207667_10049388
383 Ga0207667_10166235
384 Ga0207677_11350766
385 Ga0207678_10301258
386 Ga0207678_10340467
387 Ga0207674_10025720
388 Ga0207674_10029058
389 Ga0207698_10409342
390 Ga0207698_11064885
391 Ga0307412_10068282
392 Ga0307409_100029514
393 Ga0307409_100281524
394 Ga0307409_100586231
395 Ga0307416_100109447
396 Ga0307411_10111785
397 Ga0307415_100017207
398 Ga0307415_100551976
399 Ga0395898_0776071
400 Ga0395898_1053176
401 Ga0395901_0166405
402 Ga0395901_0455350
403 Ga0439448_0018631
404 Ga0450918_035933
405 Ga0466969_0045116
406 Ga0466961_0017190
407 Ga0466961_0477237
408 Ga0466963_0002435
409 Ga0466963_0021169
410 Ga0466963_0022433
411 Ga0466963_0147549
412 Ga0466963_0616927
413 Ga0466963_0659089
414 Ga0466968_0195149
415 Ga0466957_0012038
416 Ga0466959_0033697
417 Ga0466959_0176623
418 Ga0466958_0091431
419 Ga0466958_0098690
420 Ga0466958_0260934
421 Ga0466967_0006683
422 Ga0466967_0065790
423 Ga0466967_0220118
424 Ga0495618_0193351
425 Ga0495635_0466886
426 Ga0495581_0215255
427 Ga0496100_0014008
428 Ga0496100_0168223
429 Ga0496100_0188815
430 Ga0496100_0679198
431 Ga0496101_0007131
432 Ga0496101_0295692
433 Ga0496102_0004604
434 Ga0496102_0065067
435 Ga0496102_0104124
436 Ga0496103_0012442
437 Ga0496104_0008898
438 Ga0496104_0013349
439 Ga0496104_0633410
440 Ga0496105_0013027
441 Ga0496105_0054608
442 Ga0496105_0084278
443 Ga0496105_0217899
444 Ga0496105_0763529
445 Ga0496106_0050792
446 Ga0496106_0066087
447 Ga0496107_0055942
448 Ga0496108_0010361
449 Ga0496108_0120193
450 Ga0496109_0007263
451 Ga0496109_0032815
452 Ga0496109_0182509
453 Ga0496109_0185775
454 Ga0496109_0364224
455 Ga0496110_0040262
456 Ga0496110_0047428
457 Ga0496111_0011934
458 Ga0496111_0017539
459 Ga0496111_0240012
460 Ga0496112_0015933
461 Ga0496112_0069096
462 Ga0496113_0025700
463 Ga0496113_0455821
464 Ga0496114_0016273
465 Ga0496114_0275858
466 Ga0501043_0247187
467 Ga0501067_0013419
468 Ga0501068_0003611
469 Ga0501069_0000872
470 Ga0501069_0053396
471 Ga0501069_0054391
472 Ga0501071_0068632
473 Ga0501072_0074262
474 Ga0501081_0699084
475 Ga0501044_0234178
476 nmdc:mga05p37_1078294_c1
477 nmdc:mga09592_108014_c1
478 nmdc:mga0a205_294902_c1
479 Ga0466962_0045440
480 Ga0466962_0122565
481 Ga0530510_0006662
482 Ga0530510_0109839
483 Ga0530510_0258493
484 2515857752
485 2644609958
486 2819667885

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12840

HTH_20

Helix-turn-helix domain

58

107

0.99

PF01022

HTH_5

Bacterial regulatory protein, arsR family

60

106

0.95

PF12802

MarR_2

MarR family

51

114

0.91

PF13412

HTH_24

Winged helix-turn-helix DNA-binding

63

105

0.88

PF09339

HTH_IclR

IclR helix-turn-helix domain

64

108

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3f72-assembly3.cif.gz_E crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9498 21 74
3f72-assembly3.cif.gz_F crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9371 21 74
3f72-assembly2.cif.gz_D crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.8987 21 74
1r22-assembly1.cif.gz_B crystal structure of the cyanobacterial metallothionein repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-form 0.8852 21 92
7p6f-assembly1.cif.gz_BBB 1.93 a resolution x-ray crystal structure of the transcriptional regulator srnr from streptomyces griseus 0.8782 21 91
ID Description Score Start End Superfamily
af_Q5NE14_88_145_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9836 31 75 1.10.10.10
3tgnA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.977 29 74 1.10.10.10
af_Q2G1P1_1_44_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9512 44 75 1.10.10.10
3f72F00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9371 21 74 1.10.10.10
1ulyA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9331 13 100 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A5R8L2K0-F1-model_v4 Helix-turn-helix transcriptional regulator 0.9743 22 91 GO:0003700
AF-A0A7C0VE12-F1-model_v4 ArsR family transcriptional regulator 0.9547 28 91 GO:0003700
AF-A0A6L5FB96-F1-model_v4 Helix-turn-helix domain-containing protein 0.9431 1 93 GO:0003700
AF-A0A7C7CZ02-F1-model_v4 ArsR family transcriptional regulator 0.9402 10 96 GO:0003700
AF-A0A6L5FB96-F1-model_v4 Helix-turn-helix domain-containing protein 0.9331 1 93 GO:0003700

Map