F355381

General Info

Members Datasets Scaffolds Average Seq Length
243 177 220 422

Family's Representative Sequence

Representative Sequence 3300005445|Ga0070708_100052620|Ga0070708_1000526203
Length 484
Sequence LPNLAFEVCRLSCSTTESVAGIDDSDQARPFRGPGSYWRVSNSGVSGSFCSNYASMDQFRILGGGRLTGRIKVGGAKNSALPCLAASLLTADTVTLHNVPHVRDLITMRWLLQDLGARVLVPVLHTLRINSTAVEMFEARYELVKTMRASVLVLGPLIARFGQARVSLPGGCAIGQRPIDLHLSALEKMGASIQLRSGAVEATASRLRGAEISFEMVSVTGTENVLMAATLASGTTRILNAACEPEVVDLAELLIKMGAKIEGAGSSVITIQGVADLSGAEHQIIADRIETGTLAVAAAITMGDLSIEDCNPSHLQAVIEKLRLAGVEIDTEGDTGFHVACRRQLQATSITTEVYPGFPTDMQAQYMTLMTQAHGESEINETIFENRYMHVGELLRLGAQIQVNGHQAAVDGPTPLTGARVMASDLRASASLVLAGLVAEGETWVERVYHIDRGYEQIEKKLISVGAKIERVKSRSSMEVDQRG

Samples

Sample ID Description Type Environment
1 2501025501 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
2 2501025504 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
3 2510917014 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
4 2510917015 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
5 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
6 2513237151 Burkholderia sp. WSM2230 Isolate Nodule
7 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
8 2513237166 Paraburkholderia azotifigens UYPR1.413 Isolate Nodule
9 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
10 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
11 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
12 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
13 2786546517 Verrucomicrobia bacterium LW23 Isolate Rhizoplane
14 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
15 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
16 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
17 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified
18 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
19 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
20 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
21 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
22 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
23 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
24 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
25 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
26 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
27 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
28 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
29 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
30 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
31 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
32 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
33 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
34 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
35 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
36 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
37 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
38 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
39 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
40 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
41 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
42 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
43 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
44 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
45 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
46 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
47 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
48 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
49 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
50 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
51 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
52 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
53 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
54 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
55 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
56 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
57 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
58 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
59 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
60 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
61 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
62 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
63 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
64 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
65 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
66 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
67 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
68 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
69 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
70 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
71 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
72 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
79 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
99 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
100 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
101 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
102 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
103 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
104 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
105 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
106 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
107 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
108 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
109 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
110 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
111 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
112 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
113 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
114 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
115 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
116 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
117 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
118 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
119 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
120 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
121 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
122 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
123 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
124 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
125 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
126 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
127 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
128 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
129 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
130 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
131 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
132 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
133 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
134 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
135 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
136 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
137 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
138 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
139 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
140 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
151 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
152 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
153 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
154 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
155 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
157 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
158 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
159 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
160 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
161 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
162 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
163 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
164 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
165 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
166 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
167 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
168 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
169 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
170 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
171 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
172 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
173 642555112 Paraburkholderia phymatum STM815 Isolate Nodule
174 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
175 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified
176 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
177 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.12
Metatranscriptomes 0.41
Isolates 9.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.58
Nodule 3.7
Rhizoplane 0.82
Rhizosphere 74.49
Stem 0
Stem Tuber 0
Unclassified 7.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10001594 3300003187 Bacteria 15066
2 JGI25151J46595_10004715 3300003187 Bacteria 7166
3 Ga0055538_1000038 3300003751 Bacteria 186588
4 Ga0055524_1000669 3300003775 Bacteria 24026
5 Ga0055524_1021927 3300003775 Bacteria 2102
6 Ga0055536_1000176 3300003781 Bacteria 53490
7 Ga0055534_1000940 3300003784 Bacteria 12980
8 Ga0055534_1001271 3300003784 Bacteria 10271
9 Ga0070658_10006355 3300005327 Bacteria 9576
10 Ga0070658_10014011 3300005327 Bacteria 6437
11 Ga0070676_10076246 3300005328 Bacteria 2024
12 Ga0070690_100041017 3300005330 Bacteria 2929
13 Ga0070669_100016593 3300005353 Bacteria 5257
14 Ga0070674_100067116 3300005356 Bacteria 2522
15 Ga0070703_10000187 3300005406 Bacteria 30058
16 Ga0070709_10000603 3300005434 Bacteria 20947
17 Ga0070711_100000030 3300005439 Bacteria 100932
18 Ga0070705_100001264 3300005440 Bacteria 13644
19 Ga0070700_100006560 3300005441 Bacteria 6228
20 Ga0070694_100075314 3300005444 Bacteria 2334
21 Ga0070708_100052620 3300005445 Bacteria 3611
22 Ga0070663_100016934 3300005455 Bacteria 4744
23 Ga0070678_100149695 3300005456 Bacteria 1879
24 Ga0068867_100005989 3300005459 Bacteria 8622
25 Ga0070706_100000070 3300005467 Bacteria 118491
26 Ga0070706_100063163 3300005467 Bacteria 3422
27 Ga0070706_100149643 3300005467 Bacteria 2179
28 Ga0070707_100000217 3300005468 Bacteria 57586
29 Ga0070707_100019290 3300005468 Bacteria 6422
30 Ga0070698_100004329 3300005471 Bacteria 15604
31 Ga0070699_100000369 3300005518 Bacteria 44023
32 Ga0070699_100021512 3300005518 Bacteria 5562
33 Ga0070697_100039574 3300005536 Bacteria 3812
34 Ga0070672_100070562 3300005543 Bacteria 2776
35 Ga0070695_100180714 3300005545 Bacteria 1494
36 Ga0070696_100000080 3300005546 Bacteria 47606
37 Ga0070696_100016664 3300005546 Bacteria 4954
38 Ga0068857_100028973 3300005577 Bacteria 4887
39 Ga0068854_100007750 3300005578 Bacteria 6865
40 Ga0068859_100034460 3300005617 Bacteria 5081
41 Ga0068863_100083439 3300005841 Bacteria 3028
42 Ga0068858_100011953 3300005842 Bacteria 8181
43 Ga0068860_100037885 3300005843 Bacteria 4615
44 Ga0081539_10025222 3300005985 Bacteria 3835
45 Ga0070716_100038109 3300006173 Bacteria 2660
46 Ga0075367_10013310 3300006178 Bacteria 4418
47 Ga0075367_10120291 3300006178 Bacteria 1618
48 Ga0075366_10007414 3300006195 Bacteria 6058
49 Ga0075428_100030296 3300006844 Bacteria 5985
50 Ga0075428_100079870 3300006844 Bacteria 3570
51 Ga0075431_100007690 3300006847 Bacteria 10732
52 Ga0075433_10101209 3300006852 Bacteria 2551
53 Ga0075433_10110608 3300006852 Bacteria 2438
54 Ga0075433_10142584 3300006852 Bacteria 2130
55 Ga0075434_100052342 3300006871 Bacteria 4057
56 Ga0075434_100362249 3300006871 Bacteria 1471
57 Ga0075429_100006943 3300006880 Bacteria 9838
58 Ga0075429_100090559 3300006880 Bacteria 2668
59 Ga0075436_100000288 3300006914 Bacteria 31977
60 Ga0075436_100066936 3300006914 Bacteria 2483
61 Ga0097620_100034460 3300006931 Bacteria 5081
62 Ga0099826_10000024 3300006948 Bacteria 148974
63 Ga0075435_100252269 3300007076 Bacteria 1502
64 Ga0099794_10003043 3300007265 Bacteria 6334
65 Ga0111539_10000372 3300009094 Bacteria 55540
66 Ga0111539_10062186 3300009094 Bacteria 4421
67 Ga0114129_10015295 3300009147 Bacteria 10919
68 Ga0114129_10033065 3300009147 Bacteria 7309
69 Ga0114129_10055245 3300009147 Bacteria 5566
70 Ga0114129_10115832 3300009147 Bacteria 3693
71 Ga0114129_10508401 3300009147 Bacteria 1572
72 Ga0105249_10084878 3300009553 Bacteria 2949
73 Ga0157375_10214639 3300013308 Bacteria 2082
74 Ga0157380_10026281 3300014326 Bacteria 4419
75 Ga0157380_10073478 3300014326 Bacteria 2773
76 Ga0209565_1000727 3300025263 Bacteria 19804
77 Ga0209565_1004748 3300025263 Bacteria 4079
78 Ga0209673_1016805 3300025273 Bacteria 2721
79 Ga0209675_1000684 3300025291 Bacteria 23603
80 Ga0209675_1001176 3300025291 Bacteria 15864
81 Ga0209676_1000331 3300025292 Bacteria 90857
82 Ga0209025_1000485 3300025294 Bacteria 76825
83 Ga0209025_1000823 3300025294 Bacteria 49464
84 Ga0209025_1000853 3300025294 Bacteria 48270
85 Ga0209025_1001173 3300025294 Bacteria 37118
86 Ga0209564_1001559 3300025295 Bacteria 22537
87 Ga0209564_1004745 3300025295 Bacteria 8132
88 Ga0209564_1004809 3300025295 Bacteria 8042
89 Ga0209758_1013994 3300025297 Bacteria 4312
90 Ga0209256_1000612 3300025299 Bacteria 49490
91 Ga0209256_1000802 3300025299 Bacteria 40206
92 Ga0207653_10000013 3300025885 Bacteria 159236
93 Ga0207699_10000007 3300025906 Bacteria 405928
94 Ga0207684_10000037 3300025910 Bacteria 284224
95 Ga0207684_10001850 3300025910 Bacteria 22029
96 Ga0207684_10059205 3300025910 Bacteria 3252
97 Ga0207684_10061779 3300025910 Bacteria 3181
98 Ga0207663_10000008 3300025916 Bacteria 205803
99 Ga0207646_10000409 3300025922 Bacteria 57577
100 Ga0207646_10013314 3300025922 Bacteria 7869
101 Ga0207646_10015890 3300025922 Bacteria 7079
102 Ga0207681_10018658 3300025923 Bacteria 4373
103 Ga0207681_10040094 3300025923 Bacteria 3114
104 Ga0207709_10095805 3300025935 Bacteria 1951
105 Ga0207665_10045420 3300025939 Bacteria 2941
106 Ga0207665_10132146 3300025939 Unclassified 1773
107 Ga0207691_10005158 3300025940 Bacteria 12613
108 Ga0207689_10037210 3300025942 Bacteria 4037
109 Ga0207712_10119352 3300025961 Bacteria 1992
110 Ga0207640_10067222 3300025981 Bacteria 2397
111 Ga0207703_10078543 3300026035 Bacteria 2742
112 Ga0207678_10017081 3300026067 Bacteria 6372
113 Ga0207641_10074001 3300026088 Bacteria 2937
114 Ga0207648_10000760 3300026089 Bacteria 36174
115 Ga0207674_10020996 3300026116 Bacteria 7043
116 Ga0207683_10117836 3300026121 Bacteria 2381
117 Ga0209282_1000032 3300027666 Bacteria 149218
118 Ga0207428_10000117 3300027907 Bacteria 107832
119 Ga0207428_10139172 3300027907 Bacteria 1854
120 Ga0207428_10215885 3300027907 Bacteria 1440
121 Ga0265323_10018369 3300028653 Bacteria 2706
122 Ga0265336_10002767 3300028666 Bacteria 7083
123 Ga0265338_10000508 3300028800 Bacteria 68840
124 Ga0265331_10065063 3300031250 Bacteria 1715
125 Ga0316575_10000119 3300031665 Bacteria 19810
126 Ga0316593_10033863 3300032168 Bacteria 1674
127 Ga0316584_0167552 3300036712 Bacteria 1631
128 Ga0395900_0079101 3300037418 Bacteria 3378
129 Ga0395905_0000166 3300037471 Bacteria 108507
130 Ga0395905_0002893 3300037471 Bacteria 18759
131 Ga0400490_60761 3300038726 Bacteria 2509
132 Ga0400489_59876 3300039093 Bacteria 3458
133 Ga0439431_0016187 3300041997 Bacteria 1743
134 Ga0439435_0000145 3300042436 Bacteria 9631
135 Ga0451577_0003415 3300042876 Bacteria 17713
136 Ga0451577_0009150 3300042876 Bacteria 9555
137 Ga0451577_0018971 3300042876 Bacteria 6332
138 Ga0451577_0019825 3300042876 Bacteria 6178
139 Ga0466972_0000290 3300044658 Bacteria 30636
140 Ga0453683_0062877 3300044673 Bacteria 2321
141 Ga0466964_0053618 3300044706 Bacteria 1660
142 Ga0453684_0002093 3300044712 Bacteria 50497
143 Ga0453684_0003780 3300044712 Bacteria 33449
144 Ga0453684_0027697 3300044712 Bacteria 8113
145 Ga0453684_0076643 3300044712 Bacteria 4197
146 Ga0466970_0072366 3300044765 Bacteria 1854
147 Ga0466957_0006160 3300044842 Bacteria 6773
148 Ga0466959_0025178 3300045049 Bacteria 4408
149 Ga0451576_0000013 3300045051 Bacteria 665120
150 Ga0451576_0041017 3300045051 Bacteria 4894
151 Ga0495605_0001384 3300046474 Bacteria 15959
152 Ga0495607_0039916 3300046501 Bacteria 2799
153 Ga0495610_0002561 3300046512 Bacteria 15121
154 Ga0495616_0008291 3300046513 Bacteria 6167
155 Ga0495628_0125630 3300046516 Bacteria 1965
156 Ga0495609_0007989 3300046538 Bacteria 5225
157 Ga0495622_0001902 3300046557 Bacteria 10270
158 Ga0495611_0009522 3300046648 Bacteria 4106
159 Ga0495671_0001606 3300046692 Bacteria 14869
160 Ga0495649_0013173 3300046694 Bacteria 4777
161 Ga0495589_0035530 3300046794 Bacteria 2499
162 Ga0495672_0011217 3300047320 Bacteria 6335
163 Ga0495672_0074252 3300047320 Bacteria 1916
164 Ga0495683_0037005 3300047323 Bacteria 2476
165 Ga0496109_0000026 3300048912 Bacteria 171405
166 Ga0496116_0035630 3300048919 Bacteria 3492
167 Ga0496121_0081145 3300048924 Bacteria 2568
168 Ga0496122_0012773 3300048925 Bacteria 8311
169 Ga0496123_0005248 3300048926 Bacteria 13151
170 Ga0501031_0048775 3300049568 Bacteria 2759
171 Ga0501032_0010987 3300049569 Bacteria 6509
172 Ga0501033_0000668 3300049570 Bacteria 31668
173 Ga0501034_0000134 3300049571 Bacteria 137745
174 Ga0501034_0005349 3300049571 Bacteria 14062
175 Ga0501034_0121529 3300049571 Bacteria 2598
176 Ga0501034_0260096 3300049571 Bacteria 1678
177 Ga0501036_0001501 3300049572 Bacteria 17997
178 Ga0501037_0004363 3300049573 Bacteria 10269
179 Ga0501038_0058343 3300049574 Bacteria 3309
180 Ga0501038_0080833 3300049574 Bacteria 2739
181 Ga0501043_0006325 3300049579 Bacteria 9511
182 Ga0501046_0001989 3300049580 Bacteria 19418
183 Ga0501047_0060418 3300049581 Bacteria 3658
184 Ga0501075_0195412 3300049591 Bacteria 1543
185 Ga0501076_0066802 3300049592 Bacteria 2871
186 Ga0501076_0084338 3300049592 Bacteria 2552
187 Ga0501079_0037366 3300049741 Bacteria 3743
188 Ga0501080_0299291 3300049742 Bacteria 1459
189 Ga0501081_0300810 3300049743 Bacteria 1177
190 Ga0501044_0038183 3300049823 Bacteria 5016
191 Ga0501044_0138006 3300049823 Bacteria 2428
192 Ga0501044_0148892 3300049823 Bacteria 2324
193 Ga0501045_0040527 3300049824 Bacteria 3388
194 nmdc:mga00v17_11738_c1 3300050491 Bacteria 4819
195 nmdc:mga00v17_67234_c1 3300050491 Bacteria 2214
196 nmdc:mga0k408_1572_c1 3300050493 Bacteria 12331
197 nmdc:mga06z11_1314_c1 3300050494 Bacteria 9188
198 nmdc:mga05p37_21798_c1 3300050507 Bacteria 7761
199 nmdc:mga05p37_28_c1 3300050507 Bacteria 114869
200 nmdc:mga05p37_359490_c1 3300050507 Bacteria 1712
201 nmdc:mga05p37_416628_c1 3300050507 Bacteria 1564
202 nmdc:mga05p37_65266_c1 3300050507 Bacteria 4479
203 nmdc:mga09592_5698_c1 3300050508 Bacteria 10160
204 nmdc:mga0qj67_194234_c1 3300050509 Bacteria 1649
205 nmdc:mga06r32_4034_c1 3300050510 Bacteria 13166
206 nmdc:mga08y16_1885_c1 3300050511 Bacteria 21345
207 nmdc:mga08y16_48618_c1 3300050511 Bacteria 4439
208 nmdc:mga0n895_24637_c1 3300050512 Bacteria 5673
209 nmdc:mga0n895_330288_c1 3300050512 Bacteria 1545
210 nmdc:mga0n895_70511_c1 3300050512 Bacteria 3464
211 nmdc:mga0rr50_121212_c1 3300050513 Bacteria 2082
212 nmdc:mga0rr50_285009_c1 3300050513 Bacteria 1379
213 nmdc:mga08x19_11_c1 3300050514 Bacteria 403007
214 nmdc:mga0a205_215424_c1 3300050515 Bacteria 1807
215 nmdc:mga0a205_88545_c1 3300050515 Bacteria 2992
216 Ga0500616_0000642 3300053153 Bacteria 42060
217 Ga0500637_0021136 3300053178 Bacteria 3533
218 Ga0501084_0031579 3300054114 Bacteria 4427
219 Ga0501084_0042110 3300054114 Bacteria 3820
220 Ga0501082_0042754 3300060353 Bacteria 3906

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049591 Ga0501075_0195412 Ga0501075_0195412_63_1151 361
2 3300046516 Ga0495628_0125630 Ga0495628_0125630_821_1936 364
3 3300049743 Ga0501081_0300810 Ga0501081_0300810_17_1132 364
4 3300005985 Ga0081539_10025222 Ga0081539_100252222 388
5 3300050512 nmdc:mga0n895_330288_c1 nmdc:mga0n895_330288_c1_314_1489 388
6 3300050513 nmdc:mga0rr50_121212_c1 nmdc:mga0rr50_121212_c1_885_2060 388
7 3300053178 Ga0500637_0021136 Ga0500637_0021136_49_1227 388
8 3300027907 Ga0207428_10215885 Ga0207428_102158852 390
9 3300047320 Ga0495672_0074252 Ga0495672_0074252_183_1364 393
10 3300046557 Ga0495622_0001902 Ga0495622_0001902_6907_8169 394
11 3300039093 Ga0400489_59876 Ga0400489_59876_151_1422 395
12 3300005444 Ga0070694_100075314 Ga0070694_1000753144 399
13 3300026116 Ga0207674_10020996 Ga0207674_100209964 399
14 3300025922 Ga0207646_10000409 Ga0207646_1000040928 401
15 3300006852 Ga0075433_10101209 Ga0075433_101012092 405
16 3300027907 Ga0207428_10139172 Ga0207428_101391721 405
17 3300044712 Ga0453684_0027697 Ga0453684_0027697_1937_3172 408
18 3300046794 Ga0495589_0035530 Ga0495589_0035530_903_2165 409
19 iso_pu_bacteria 2786546517 2787437286 411
20 iso_pu_bacteria 2501025501 2501075051 412
21 iso_pu_bacteria 2501025504 2501412750 412
22 iso_pu_bacteria 2510917014 2511099832 412
23 iso_pu_bacteria 2510917015 2511102397 412
24 iso_pu_bacteria 2513237150 2513956683 412
25 iso_pu_bacteria 2513237151 2513962658 412
26 iso_pu_bacteria 2513237165 2514044487 412
27 iso_pu_bacteria 2513237166 2514050842 412
28 iso_pu_bacteria 2522572158 2523103623 412
29 iso_pu_bacteria 2562617112 2563061587 412
30 iso_pu_bacteria 2643221603 2644027011 412
31 iso_pu_bacteria 2711768613 2713478547 412
32 iso_pu_bacteria 2791355137 2792837009 412
33 iso_pu_bacteria 2834641062 2834642560 412
34 iso_pu_bacteria 2858688981 2858694351 412
35 iso_pu_bacteria 2919046199 2919049063 412
36 iso_pu_bacteria 2921643360 2921647673 412
37 iso_pu_bacteria 642555112 642594557 412
38 iso_pu_bacteria 644736347 644749194 412
39 iso_pu_bacteria 646564506 646814495 412
40 iso_pu_bacteria 8003400568 8003402206 412
41 iso_pu_bacteria 8048746797 8048747537 412
42 3300050509 nmdc:mga0qj67_194234_c1 nmdc:mga0qj67_194234_c1_63_1322 413
43 3300031250 Ga0265331_10065063 Ga0265331_100650632 415
44 3300042876 Ga0451577_0018971 Ga0451577_0018971_3918_5180 415
45 3300003187 JGI25151J46595_10001594 JGI25151J46595_1000159413 416
46 3300003187 JGI25151J46595_10004715 JGI25151J46595_100047155 416
47 3300003751 Ga0055538_1000038 Ga0055538_1000038114 416
48 3300003775 Ga0055524_1000669 Ga0055524_100066921 416
49 3300003775 Ga0055524_1021927 Ga0055524_10219271 416
50 3300003781 Ga0055536_1000176 Ga0055536_100017627 416
51 3300003784 Ga0055534_1000940 Ga0055534_10009406 416
52 3300003784 Ga0055534_1001271 Ga0055534_10012716 416
53 3300005327 Ga0070658_10006355 Ga0070658_100063555 416
54 3300005327 Ga0070658_10014011 Ga0070658_100140114 416
55 3300005328 Ga0070676_10076246 Ga0070676_100762462 416
56 3300005330 Ga0070690_100041017 Ga0070690_1000410173 416
57 3300005353 Ga0070669_100016593 Ga0070669_1000165932 416
58 3300005356 Ga0070674_100067116 Ga0070674_1000671162 416
59 3300005406 Ga0070703_10000187 Ga0070703_1000018731 416
60 3300005434 Ga0070709_10000603 Ga0070709_100006038 416
61 3300005439 Ga0070711_100000030 Ga0070711_10000003062 416
62 3300005440 Ga0070705_100001264 Ga0070705_1000012649 416
63 3300005441 Ga0070700_100006560 Ga0070700_1000065602 416
64 3300005445 Ga0070708_100052620 Ga0070708_1000526203 416
65 3300005455 Ga0070663_100016934 Ga0070663_1000169342 416
66 3300005456 Ga0070678_100149695 Ga0070678_1001496952 416
67 3300005459 Ga0068867_100005989 Ga0068867_1000059892 416
68 3300005467 Ga0070706_100000070 Ga0070706_10000007013 416
69 3300005467 Ga0070706_100063163 Ga0070706_1000631632 416
70 3300005467 Ga0070706_100149643 Ga0070706_1001496432 416
71 3300005468 Ga0070707_100000217 Ga0070707_10000021729 416
72 3300005468 Ga0070707_100019290 Ga0070707_1000192903 416
73 3300005471 Ga0070698_100004329 Ga0070698_1000043298 416
74 3300005518 Ga0070699_100000369 Ga0070699_10000036929 416
75 3300005518 Ga0070699_100021512 Ga0070699_1000215125 416
76 3300005536 Ga0070697_100039574 Ga0070697_1000395743 416
77 3300005543 Ga0070672_100070562 Ga0070672_1000705622 416
78 3300005545 Ga0070695_100180714 Ga0070695_1001807141 416
79 3300005546 Ga0070696_100000080 Ga0070696_10000008026 416
80 3300005546 Ga0070696_100016664 Ga0070696_1000166641 416
81 3300005577 Ga0068857_100028973 Ga0068857_1000289731 416
82 3300005578 Ga0068854_100007750 Ga0068854_1000077507 416
83 3300005617 Ga0068859_100034460 Ga0068859_1000344606 416
84 3300005841 Ga0068863_100083439 Ga0068863_1000834393 416
85 3300005842 Ga0068858_100011953 Ga0068858_1000119535 416
86 3300005843 Ga0068860_100037885 Ga0068860_1000378855 416
87 3300006173 Ga0070716_100038109 Ga0070716_1000381092 416
88 3300006178 Ga0075367_10013310 Ga0075367_100133103 416
89 3300006178 Ga0075367_10120291 Ga0075367_101202912 416
90 3300006195 Ga0075366_10007414 Ga0075366_100074145 416
91 3300006844 Ga0075428_100030296 Ga0075428_1000302964 416
92 3300006844 Ga0075428_100079870 Ga0075428_1000798702 416
93 3300006847 Ga0075431_100007690 Ga0075431_1000076905 416
94 3300006852 Ga0075433_10110608 Ga0075433_101106082 416
95 3300006852 Ga0075433_10142584 Ga0075433_101425842 416
96 3300006871 Ga0075434_100052342 Ga0075434_1000523423 416
97 3300006871 Ga0075434_100362249 Ga0075434_1003622491 416
98 3300006880 Ga0075429_100006943 Ga0075429_1000069435 416
99 3300006880 Ga0075429_100090559 Ga0075429_1000905592 416
100 3300006914 Ga0075436_100000288 Ga0075436_1000002885 416
101 3300006914 Ga0075436_100066936 Ga0075436_1000669362 416
102 3300006931 Ga0097620_100034460 Ga0097620_1000344606 416
103 3300006948 Ga0099826_10000024 Ga0099826_1000002471 416
104 3300007076 Ga0075435_100252269 Ga0075435_1002522692 416
105 3300007265 Ga0099794_10003043 Ga0099794_100030434 416
106 3300009094 Ga0111539_10000372 Ga0111539_1000037246 416
107 3300009094 Ga0111539_10062186 Ga0111539_100621865 416
108 3300009147 Ga0114129_10015295 Ga0114129_100152954 416
109 3300009147 Ga0114129_10033065 Ga0114129_100330655 416
110 3300009147 Ga0114129_10055245 Ga0114129_100552454 416
111 3300009147 Ga0114129_10115832 Ga0114129_101158322 416
112 3300009147 Ga0114129_10508401 Ga0114129_105084012 416
113 3300009553 Ga0105249_10084878 Ga0105249_100848782 416
114 3300013308 Ga0157375_10214639 Ga0157375_102146392 416
115 3300014326 Ga0157380_10026281 Ga0157380_100262812 416
116 3300014326 Ga0157380_10073478 Ga0157380_100734782 416
117 3300025263 Ga0209565_1000727 Ga0209565_100072720 416
118 3300025263 Ga0209565_1004748 Ga0209565_10047483 416
119 3300025273 Ga0209673_1016805 Ga0209673_10168053 416
120 3300025291 Ga0209675_1000684 Ga0209675_100068414 416
121 3300025291 Ga0209675_1001176 Ga0209675_100117616 416
122 3300025292 Ga0209676_1000331 Ga0209676_100033177 416
123 3300025294 Ga0209025_1000485 Ga0209025_100048542 416
124 3300025294 Ga0209025_1000823 Ga0209025_100082339 416
125 3300025294 Ga0209025_1000853 Ga0209025_100085339 416
126 3300025294 Ga0209025_1001173 Ga0209025_100117314 416
127 3300025295 Ga0209564_1001559 Ga0209564_100155917 416
128 3300025295 Ga0209564_1004745 Ga0209564_10047459 416
129 3300025295 Ga0209564_1004809 Ga0209564_10048093 416
130 3300025297 Ga0209758_1013994 Ga0209758_10139943 416
131 3300025299 Ga0209256_1000612 Ga0209256_100061239 416
132 3300025299 Ga0209256_1000802 Ga0209256_10008028 416
133 3300025885 Ga0207653_10000013 Ga0207653_1000001384 416
134 3300025906 Ga0207699_10000007 Ga0207699_10000007188 416
135 3300025910 Ga0207684_10000037 Ga0207684_10000037100 416
136 3300025910 Ga0207684_10001850 Ga0207684_1000185017 416
137 3300025910 Ga0207684_10059205 Ga0207684_100592052 416
138 3300025910 Ga0207684_10061779 Ga0207684_100617793 416
139 3300025916 Ga0207663_10000008 Ga0207663_1000000837 416
140 3300025922 Ga0207646_10013314 Ga0207646_100133142 416
141 3300025922 Ga0207646_10015890 Ga0207646_100158904 416
142 3300025923 Ga0207681_10018658 Ga0207681_100186583 416
143 3300025923 Ga0207681_10040094 Ga0207681_100400942 416
144 3300025935 Ga0207709_10095805 Ga0207709_100958052 416
145 3300025939 Ga0207665_10045420 Ga0207665_100454202 416
146 3300025939 Ga0207665_10132146 Ga0207665_101321462 416
147 3300025940 Ga0207691_10005158 Ga0207691_100051586 416
148 3300025942 Ga0207689_10037210 Ga0207689_100372102 416
149 3300025961 Ga0207712_10119352 Ga0207712_101193522 416
150 3300025981 Ga0207640_10067222 Ga0207640_100672223 416
151 3300026035 Ga0207703_10078543 Ga0207703_100785432 416
152 3300026067 Ga0207678_10017081 Ga0207678_100170813 416
153 3300026088 Ga0207641_10074001 Ga0207641_100740013 416
154 3300026089 Ga0207648_10000760 Ga0207648_1000076028 416
155 3300026121 Ga0207683_10117836 Ga0207683_101178362 416
156 3300027666 Ga0209282_1000032 Ga0209282_100003295 416
157 3300027907 Ga0207428_10000117 Ga0207428_1000011769 416
158 3300028653 Ga0265323_10018369 Ga0265323_100183692 416
159 3300028666 Ga0265336_10002767 Ga0265336_100027673 416
160 3300028800 Ga0265338_10000508 Ga0265338_1000050831 416
161 3300031665 Ga0316575_10000119 Ga0316575_1000011916 416
162 3300032168 Ga0316593_10033863 Ga0316593_100338631 416
163 3300036712 Ga0316584_0167552 Ga0316584_0167552_68_1330 416
164 3300037418 Ga0395900_0079101 Ga0395900_0079101_1401_2654 416
165 3300037471 Ga0395905_0000166 Ga0395905_0000166_73152_74522 416
166 3300037471 Ga0395905_0002893 Ga0395905_0002893_16025_17275 416
167 3300038726 Ga0400490_60761 Ga0400490_60761_794_2056 416
168 3300041997 Ga0439431_0016187 Ga0439431_0016187_427_1677 416
169 3300042436 Ga0439435_0000145 Ga0439435_0000145_2454_3704 416
170 3300042876 Ga0451577_0003415 Ga0451577_0003415_2227_3516 416
171 3300042876 Ga0451577_0009150 Ga0451577_0009150_3320_4579 416
172 3300042876 Ga0451577_0019825 Ga0451577_0019825_21_1286 416
173 3300044658 Ga0466972_0000290 Ga0466972_0000290_18759_20009 416
174 3300044673 Ga0453683_0062877 Ga0453683_0062877_1007_2263 416
175 3300044706 Ga0466964_0053618 Ga0466964_0053618_42_1292 416
176 3300044712 Ga0453684_0002093 Ga0453684_0002093_31041_32330 416
177 3300044712 Ga0453684_0003780 Ga0453684_0003780_74_1339 416
178 3300044712 Ga0453684_0076643 Ga0453684_0076643_2147_3403 416
179 3300044765 Ga0466970_0072366 Ga0466970_0072366_446_1696 416
180 3300044842 Ga0466957_0006160 Ga0466957_0006160_1125_2375 416
181 3300045049 Ga0466959_0025178 Ga0466959_0025178_2127_3377 416
182 3300045051 Ga0451576_0000013 Ga0451576_0000013_569119_570369 416
183 3300045051 Ga0451576_0041017 Ga0451576_0041017_371_1669 416
184 3300046474 Ga0495605_0001384 Ga0495605_0001384_2780_4030 416
185 3300046501 Ga0495607_0039916 Ga0495607_0039916_1293_2543 416
186 3300046512 Ga0495610_0002561 Ga0495610_0002561_12314_13564 416
187 3300046513 Ga0495616_0008291 Ga0495616_0008291_2456_3706 416
188 3300046538 Ga0495609_0007989 Ga0495609_0007989_2667_3917 416
189 3300046648 Ga0495611_0009522 Ga0495611_0009522_1894_3156 416
190 3300046692 Ga0495671_0001606 Ga0495671_0001606_3346_4596 416
191 3300046694 Ga0495649_0013173 Ga0495649_0013173_2756_4018 416
192 3300047320 Ga0495672_0011217 Ga0495672_0011217_2278_3540 416
193 3300047323 Ga0495683_0037005 Ga0495683_0037005_724_2160 416
194 3300048912 Ga0496109_0000026 Ga0496109_0000026_30924_32195 416
195 3300048919 Ga0496116_0035630 Ga0496116_0035630_683_1933 416
196 3300048924 Ga0496121_0081145 Ga0496121_0081145_1171_2421 416
197 3300048925 Ga0496122_0012773 Ga0496122_0012773_5413_6663 416
198 3300048926 Ga0496123_0005248 Ga0496123_0005248_10387_11637 416
199 3300049568 Ga0501031_0048775 Ga0501031_0048775_1191_2444 416
200 3300049569 Ga0501032_0010987 Ga0501032_0010987_2171_3424 416
201 3300049570 Ga0501033_0000668 Ga0501033_0000668_5165_6418 416
202 3300049571 Ga0501034_0000134 Ga0501034_0000134_9873_11123 416
203 3300049571 Ga0501034_0005349 Ga0501034_0005349_5387_6640 416
204 3300049571 Ga0501034_0121529 Ga0501034_0121529_997_2250 416
205 3300049571 Ga0501034_0260096 Ga0501034_0260096_120_1373 416
206 3300049572 Ga0501036_0001501 Ga0501036_0001501_14095_15348 416
207 3300049573 Ga0501037_0004363 Ga0501037_0004363_6952_8205 416
208 3300049574 Ga0501038_0058343 Ga0501038_0058343_314_1567 416
209 3300049574 Ga0501038_0080833 Ga0501038_0080833_441_1703 416
210 3300049579 Ga0501043_0006325 Ga0501043_0006325_557_1810 416
211 3300049580 Ga0501046_0001989 Ga0501046_0001989_7980_9233 416
212 3300049581 Ga0501047_0060418 Ga0501047_0060418_352_1614 416
213 3300049592 Ga0501076_0066802 Ga0501076_0066802_993_2249 416
214 3300049592 Ga0501076_0084338 Ga0501076_0084338_294_1604 416
215 3300049741 Ga0501079_0037366 Ga0501079_0037366_2246_3556 416
216 3300049742 Ga0501080_0299291 Ga0501080_0299291_13_1323 416
217 3300049823 Ga0501044_0038183 Ga0501044_0038183_1807_3060 416
218 3300049823 Ga0501044_0138006 Ga0501044_0138006_121_1374 416
219 3300049823 Ga0501044_0148892 Ga0501044_0148892_18_1280 416
220 3300049824 Ga0501045_0040527 Ga0501045_0040527_905_2215 416
221 3300050491 nmdc:mga00v17_11738_c1 nmdc:mga00v17_11738_c1_752_2053 416
222 3300050491 nmdc:mga00v17_67234_c1 nmdc:mga00v17_67234_c1_372_1673 416
223 3300050493 nmdc:mga0k408_1572_c1 nmdc:mga0k408_1572_c1_2768_4069 416
224 3300050494 nmdc:mga06z11_1314_c1 nmdc:mga06z11_1314_c1_5362_6663 416
225 3300050507 nmdc:mga05p37_21798_c1 nmdc:mga05p37_21798_c1_5801_7072 416
226 3300050507 nmdc:mga05p37_28_c1 nmdc:mga05p37_28_c1_4171_5430 416
227 3300050507 nmdc:mga05p37_359490_c1 nmdc:mga05p37_359490_c1_261_1562 416
228 3300050507 nmdc:mga05p37_416628_c1 nmdc:mga05p37_416628_c1_93_1394 416
229 3300050507 nmdc:mga05p37_65266_c1 nmdc:mga05p37_65266_c1_1917_3218 416
230 3300050508 nmdc:mga09592_5698_c1 nmdc:mga09592_5698_c1_3899_5155 416
231 3300050510 nmdc:mga06r32_4034_c1 nmdc:mga06r32_4034_c1_6590_7891 416
232 3300050511 nmdc:mga08y16_1885_c1 nmdc:mga08y16_1885_c1_10680_11981 416
233 3300050511 nmdc:mga08y16_48618_c1 nmdc:mga08y16_48618_c1_283_1581 416
234 3300050512 nmdc:mga0n895_24637_c1 nmdc:mga0n895_24637_c1_1194_2492 416
235 3300050512 nmdc:mga0n895_70511_c1 nmdc:mga0n895_70511_c1_1666_2937 416
236 3300050513 nmdc:mga0rr50_285009_c1 nmdc:mga0rr50_285009_c1_30_1289 416
237 3300050514 nmdc:mga08x19_11_c1 nmdc:mga08x19_11_c1_296557_297816 416
238 3300050515 nmdc:mga0a205_215424_c1 nmdc:mga0a205_215424_c1_148_1407 416
239 3300050515 nmdc:mga0a205_88545_c1 nmdc:mga0a205_88545_c1_544_1815 416
240 3300053153 Ga0500616_0000642 Ga0500616_0000642_4180_5529 416
241 3300054114 Ga0501084_0031579 Ga0501084_0031579_1188_2447 416
242 3300054114 Ga0501084_0042110 Ga0501084_0042110_479_1750 416
243 3300060353 Ga0501082_0042754 Ga0501082_0042754_2611_3870 416

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00275

EPSP_synthase

EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

61

462

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5u4h-assembly1.cif.gz_B 1.05 angstrom resolution crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase from acinetobacter baumannii in covalently bound complex with (2r)-2-(phosphonooxy)propanoic acid. 0.9838 1 416
5u4h-assembly1.cif.gz_B 1.05 angstrom resolution crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase from acinetobacter baumannii in covalently bound complex with (2r)-2-(phosphonooxy)propanoic acid. 0.9814 1 416
6q03-assembly1.cif.gz_A crystal structure of mura from clostridium difficile in the presence of udp-n-acetyl-alpha-d-muramic acid with modified cys116 (s-[(1s)-1-carboxy-1-(phosphonooxy)ethyl]-l-cysteine) 0.9805 1 416
6cn1-assembly2.cif.gz_G 2.75 angstrom resolution crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase from pseudomonas putida in complex with uridine-diphosphate-2(n-acetylglucosaminyl) butyric acid, (2r)-2-(phosphonooxy)propanoic acid and magnesium 0.9798 1 415
2rl1-assembly1.cif.gz_A crystal structure of udp-n-acetylglucosamine enolpyruvyl transferase from haemophilus influenzae in complex with udp-n-acetylglucosamine 0.9795 1 416
ID Description Score Start End Superfamily
af_P9WJM1_237_415_3.65.10.10 Alpha Beta;Alpha-beta prism;UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain;Enolpyruvate transferase domain 0.9902 237 413 3.65.10.10
af_P0A749_226_417_3.40.50.1370 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.9898 226 416 3.40.50.1370
5bq2A01 Alpha Beta;Alpha-beta prism;UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain;Enolpyruvate transferase domain 0.9891 229 415 3.65.10.10
af_Q2FWF4_219_417_3.65.10.10 Alpha Beta;Alpha-beta prism;UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain;Enolpyruvate transferase domain 0.982 216 413 3.65.10.10
af_P0A749_226_417_3.40.50.1370 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.9796 226 416 3.40.50.1370
ID Description Score Start End GO Terms
AF-A0A2W0ASA3-F1-model_v4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) 0.9989 124 239 GO:0005737
GO:0008360
GO:0008760
GO:0009252
GO:0051301
GO:0071555
AF-A0A836NXK3-F1-model_v4 deleted 0.9955 251 416
AF-A0A2D6QLY6-F1-model_v4 deleted 0.9953 216 416
AF-A0A351Q3T8-F1-model_v4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) 0.9944 231 416 GO:0005737
GO:0008360
GO:0008760
GO:0009252
GO:0051301
GO:0071555
AF-A0A3D3GWW5-F1-model_v4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) 0.9944 153 284 GO:0005737
GO:0008360
GO:0008760
GO:0009252
GO:0051301
GO:0071555

Feature Viewer

pLDDT pTM Quality
94.17 0.92 High
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Predicted Structure (AlphaFold2)

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