F354555

General Info

Members Datasets Scaffolds Average Seq Length
242 161 484 318

Family's Representative Sequence

Representative Sequence 3300006844|Ga0075428_100025115|Ga0075428_1000251154
Length 374
Sequence MAGSLWRDAPGGERSPGAGGVAPPAVGGGHAGRRSSPCGPAAGRYRPGMAKAPATEVRVGERTVRISNPDRVYFPATGATKLDLVAYYQAVGPGIVRALRERPCMLHRFPKGVSGDKVHQKRVPGGAPPWLETVRVHFPRYGLHADELCVTELAQVIWAVQMSTVEFHPWNSRRADVEVPDEWRIDLDPMPECSYATVRRVAGVVHEVLDELGAVGWPKTSGGRGLHVYVRIVPEHGFTDVRRAALAFAREVERRAPELVTTTWWRKDRDPAALFVDYNQNARDHTMAAAYSVRGLPTATVSTPISWDEVDVVEPGDCTIATVPGRFAELGDLHAGIDDAAYGIDELLVWAERDERAGAVDAGVPDDDGAPDGG

Samples

Sample ID Description Type Environment
1 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
7 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
8 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
11 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
12 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
15 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
16 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
20 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300012487 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510 Metagenome Rhizosphere
26 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
29 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
36 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
39 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
40 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
41 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
42 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
43 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
44 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
47 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
48 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
49 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
50 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
53 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
54 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
55 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
58 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
59 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
60 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
61 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
62 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
63 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
64 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
65 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
66 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
67 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
68 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
69 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
70 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
71 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
74 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
75 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
76 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
77 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
78 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
81 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
82 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
83 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
84 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
85 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
86 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
89 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
90 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
91 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
92 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
93 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
94 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
95 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
96 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
99 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
100 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
101 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
102 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
105 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
106 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
107 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
108 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
109 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
110 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
111 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
112 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
113 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
114 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
127 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
128 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
129 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
130 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
131 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
132 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
133 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
134 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
137 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
138 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
139 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
140 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
141 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
142 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
143 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
144 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
145 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
146 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
147 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
148 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
149 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
150 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
151 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
152 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
153 2643221692 Nocardia sp. Root136 Isolate Unclassified
154 2738541305 Nocardioides sp. CF167 Isolate Unclassified
155 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
156 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
157 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
158 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
159 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
160 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
161 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 95.45
Metatranscriptomes 0
Isolates 4.55

Biome Distribution

Category Percentage (%)
Aerial Root 0.41
Bulb 0
Endosphere 5.37
Nodule 0
Rhizoplane 11.98
Rhizosphere 77.27
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075428_100025115 3300006844 Bacteria 6592
2 JGI25407J50210_10004239 3300003373 Bacteria 3488
3 Ga0070668_100190967 3300005347 Bacteria 1677
4 Ga0070714_100022149 3300005435 Bacteria 5208
5 Ga0070706_100005952 3300005467 Bacteria 11536
6 Ga0070706_100007953 3300005467 Bacteria 9899
7 Ga0070707_100046928 3300005468 Bacteria 4134
8 Ga0070698_100006650 3300005471 Bacteria 12536
9 Ga0070698_100012045 3300005471 Bacteria 9170
10 Ga0070699_100004229 3300005518 Bacteria 12695
11 Ga0070697_100000297 3300005536 Bacteria 39837
12 Ga0068860_100030440 3300005843 Bacteria 5192
13 Ga0081455_10006278 3300005937 Bacteria 12780
14 Ga0081455_10008801 3300005937 Bacteria 10447
15 Ga0081455_10019099 3300005937 Bacteria 6497
16 Ga0081538_10000319 3300005981 Bacteria 54989
17 Ga0081538_10004044 3300005981 Bacteria 13638
18 Ga0070717_10018616 3300006028 Bacteria 5428
19 Ga0070717_10394099 3300006028 Bacteria 1243
20 Ga0075364_10012241 3300006051 Bacteria 5243
21 Ga0075364_10032417 3300006051 Bacteria 3358
22 Ga0075364_10174194 3300006051 Bacteria 1455
23 Ga0075362_10142969 3300006177 Bacteria 1144
24 Ga0075367_10071504 3300006178 Bacteria 2087
25 Ga0075367_10095033 3300006178 Bacteria 1817
26 Ga0075367_10214986 3300006178 Bacteria 1202
27 Ga0075428_100002257 3300006844 Bacteria 20879
28 Ga0075428_100021277 3300006844 Bacteria 7183
29 Ga0075428_100027914 3300006844 Bacteria 6245
30 Ga0075428_100259786 3300006844 Bacteria 1870
31 Ga0075430_100000652 3300006846 Bacteria 26444
32 Ga0075430_100006185 3300006846 Bacteria 10090
33 Ga0075430_100030731 3300006846 Bacteria 4562
34 Ga0075430_100157487 3300006846 Bacteria 1890
35 Ga0075431_100000615 3300006847 Bacteria 30078
36 Ga0075431_100002032 3300006847 Bacteria 19328
37 Ga0075431_100019993 3300006847 Bacteria 6837
38 Ga0075431_100129790 3300006847 Bacteria 2600
39 Ga0075431_100467935 3300006847 Bacteria 1254
40 Ga0075429_100001352 3300006880 Bacteria 20035
41 Ga0075429_100002198 3300006880 Bacteria 16314
42 Ga0099794_10056934 3300007265 Bacteria 1893
43 Ga0111539_10030620 3300009094 Bacteria 6541
44 Ga0111539_10127447 3300009094 Bacteria 2981
45 Ga0114129_10002086 3300009147 Bacteria 27480
46 Ga0114129_10033794 3300009147 Bacteria 7224
47 Ga0114129_10060032 3300009147 Bacteria 5317
48 Ga0114129_10116831 3300009147 Bacteria 3676
49 Ga0105243_10000176 3300009148 Bacteria 73715
50 Ga0105239_10053175 3300010375 Bacteria 4443
51 Ga0157321_1002373 3300012487 Bacteria 1047
52 Ga0157375_10422149 3300013308 Bacteria 1500
53 Ga0163163_10043482 3300014325 Bacteria 4405
54 Ga0157379_10040008 3300014968 Bacteria 4183
55 Ga0207685_10020418 3300025905 Bacteria 2201
56 Ga0207684_10183589 3300025910 Bacteria 1804
57 Ga0207657_10065585 3300025919 Bacteria 3094
58 Ga0207646_10001463 3300025922 Bacteria 29237
59 Ga0207664_10013585 3300025929 Bacteria 5851
60 Ga0207709_10000739 3300025935 Bacteria 25922
61 Ga0207428_10021005 3300027907 Bacteria 5535
62 Ga0207428_10090902 3300027907 Bacteria 2370
63 Ga0268266_10094322 3300028379 Bacteria 2627
64 Ga0268264_10230872 3300028381 Bacteria 1709
65 Ga0307515_10017172 3300028794 Bacteria 13203
66 Ga0307512_10001605 3300030522 Bacteria 31456
67 Ga0307512_10001664 3300030522 Bacteria 30612
68 Ga0307513_10004400 3300031456 Bacteria 18807
69 Ga0316576_10017585 3300031727 Bacteria 4862
70 Ga0316578_10012443 3300031728 Bacteria 4487
71 Ga0316577_10085856 3300031733 Bacteria 1761
72 Ga0307410_10002460 3300031852 Bacteria 8944
73 Ga0307410_10283409 3300031852 Bacteria 1301
74 Ga0307409_100149360 3300031995 Bacteria 2026
75 Ga0307414_10243719 3300032004 Bacteria 1490
76 Ga0307507_10009871 3300033179 Bacteria 12561
77 Ga0373923_0000357 3300035111 Bacteria 10372
78 Ga0373936_0004286 3300035113 Bacteria 5388
79 Ga0373943_0002302 3300035170 Bacteria 8674
80 Ga0316574_0005161 3300035398 Bacteria 6945
81 Ga0373924_0077253 3300035410 Bacteria 1411
82 Ga0373927_0109052 3300035695 Bacteria 1803
83 Ga0316582_0009718 3300036647 Bacteria 5231
84 Ga0373925_0026044 3300037068 Bacteria 4276
85 Ga0395905_0299930 3300037471 Bacteria 1494
86 Ga0395905_0412002 3300037471 Bacteria 1247
87 Ga0395901_0147520 3300038443 Bacteria 2472
88 Ga0436365_0581220 3300039437 Bacteria 2798
89 Ga0436365_1646100 3300039437 Bacteria 7328
90 Ga0439447_042938 3300041407 Bacteria 1097
91 Ga0439444_0010627 3300042437 Bacteria 1474
92 Ga0439464_0009241 3300042439 Bacteria 2593
93 Ga0466969_0011290 3300044656 Bacteria 4729
94 Ga0466972_0002145 3300044658 Bacteria 9688
95 Ga0466965_0000378 3300044683 Bacteria 15176
96 Ga0466966_0006817 3300044684 Bacteria 7568
97 Ga0466961_0003350 3300044693 Bacteria 9999
98 Ga0466970_0003109 3300044765 Bacteria 8060
99 Ga0466957_0068302 3300044842 Bacteria 2194
100 Ga0466957_0121727 3300044842 Bacteria 1664
101 Ga0466960_0000584 3300044901 Bacteria 12624
102 Ga0466960_0033837 3300044901 Bacteria 2378
103 Ga0466959_0002336 3300045049 Bacteria 12110
104 Ga0466958_0044002 3300045836 Bacteria 2690
105 Ga0466967_0095354 3300045976 Bacteria 2711
106 Ga0495603_0001653 3300046455 Bacteria 13065
107 Ga0495629_0015687 3300046459 Bacteria 5438
108 Ga0495651_0043132 3300046462 Bacteria 3500
109 Ga0495650_0027879 3300046471 Bacteria 2602
110 Ga0495582_0001847 3300046473 Bacteria 11952
111 Ga0495662_0003735 3300046476 Bacteria 7672
112 Ga0495664_0007935 3300046477 Bacteria 5910
113 Ga0495608_0167350 3300046511 Bacteria 1395
114 Ga0495618_0095369 3300046514 Bacteria 1902
115 Ga0495628_0101629 3300046516 Bacteria 2219
116 Ga0495630_0051953 3300046517 Bacteria 3068
117 Ga0495666_0001194 3300046526 Bacteria 12527
118 Ga0495652_0066714 3300046529 Bacteria 3018
119 Ga0495665_0002943 3300046531 Bacteria 9197
120 Ga0495640_0065160 3300046533 Bacteria 2461
121 Ga0495586_0018273 3300046535 Bacteria 3732
122 Ga0495587_0125386 3300046536 Bacteria 1469
123 Ga0495645_0084898 3300046543 Bacteria 2266
124 Ga0495645_0179496 3300046543 Bacteria 1452
125 Ga0495667_0208129 3300046559 Bacteria 1250
126 Ga0495658_0001184 3300046683 Bacteria 13739
127 Ga0495613_0049084 3300046689 Bacteria 3115
128 Ga0495624_0031508 3300046690 Bacteria 3445
129 Ga0495600_0012678 3300046809 Bacteria 5276
130 Ga0495581_0079666 3300047315 Bacteria 1895
131 Ga0495674_0100068 3300047319 Bacteria 2467
132 Ga0495674_0270424 3300047319 Bacteria 1394
133 Ga0495676_0029364 3300047321 Bacteria 4682
134 Ga0495684_0018048 3300047471 Bacteria 5437
135 Ga0495593_0015040 3300047673 Bacteria 4395
136 Ga0496100_0329768 3300048903 Bacteria 1148
137 Ga0496101_0123753 3300048904 Bacteria 1958
138 Ga0496101_0361358 3300048904 Bacteria 1141
139 Ga0496102_0000885 3300048905 Bacteria 28477
140 Ga0496102_0131906 3300048905 Bacteria 2339
141 Ga0496102_0188413 3300048905 Bacteria 1944
142 Ga0496102_0308727 3300048905 Bacteria 1491
143 Ga0496102_0312827 3300048905 Bacteria 1480
144 Ga0496103_0065404 3300048906 Bacteria 2268
145 Ga0496104_0003517 3300048907 Bacteria 13510
146 Ga0496104_0362906 3300048907 Bacteria 1361
147 Ga0496105_0004869 3300048908 Bacteria 10139
148 Ga0496105_0019249 3300048908 Bacteria 5505
149 Ga0496105_0090439 3300048908 Bacteria 2528
150 Ga0496108_0051543 3300048911 Bacteria 3448
151 Ga0496108_0059635 3300048911 Bacteria 3209
152 Ga0496108_0076550 3300048911 Bacteria 2828
153 Ga0496109_0096024 3300048912 Bacteria 2745
154 Ga0496109_0215712 3300048912 Bacteria 1805
155 Ga0496109_0415025 3300048912 Bacteria 1272
156 Ga0496110_0051890 3300048913 Bacteria 3604
157 Ga0496110_0107952 3300048913 Bacteria 2499
158 Ga0496111_0215742 3300048914 Bacteria 1425
159 Ga0496113_0002854 3300048916 Bacteria 10166
160 Ga0496114_0002534 3300048917 Bacteria 13948
161 Ga0496114_0004660 3300048917 Bacteria 10660
162 Ga0496114_0058586 3300048917 Bacteria 3216
163 Ga0496115_0032917 3300048918 Bacteria 4092
164 Ga0496115_0075026 3300048918 Bacteria 2747
165 Ga0501031_0095667 3300049568 Bacteria 1938
166 Ga0501033_0032647 3300049570 Bacteria 3910
167 Ga0501034_0037182 3300049571 Bacteria 4929
168 Ga0501036_0009661 3300049572 Bacteria 7938
169 Ga0501036_0427183 3300049572 Bacteria 1105
170 Ga0501037_0071937 3300049573 Bacteria 2515
171 Ga0501039_0017692 3300049575 Bacteria 5468
172 Ga0501039_0065059 3300049575 Bacteria 2828
173 Ga0501040_0002294 3300049576 Bacteria 12292
174 Ga0501040_0037338 3300049576 Bacteria 3300
175 Ga0501040_0153794 3300049576 Bacteria 1624
176 Ga0501041_0017221 3300049577 Bacteria 4301
177 Ga0501041_0019728 3300049577 Bacteria 4028
178 Ga0501041_0088938 3300049577 Bacteria 1906
179 Ga0501042_0008975 3300049578 Bacteria 6639
180 Ga0501042_0011037 3300049578 Bacteria 6082
181 Ga0501043_0017839 3300049579 Bacteria 5565
182 Ga0501046_0033392 3300049580 Bacteria 4157
183 Ga0501048_0020619 3300049582 Bacteria 4831
184 Ga0501067_0005106 3300049583 Bacteria 7292
185 Ga0501068_0010423 3300049584 Bacteria 5223
186 Ga0501071_0033525 3300049587 Bacteria 3648
187 Ga0501072_0014416 3300049588 Bacteria 6058
188 Ga0501072_0019852 3300049588 Bacteria 5200
189 Ga0501072_0067483 3300049588 Bacteria 2822
190 Ga0501074_0085032 3300049590 Bacteria 2267
191 Ga0501076_0021121 3300049592 Bacteria 4989
192 Ga0501076_0101517 3300049592 Bacteria 2319
193 Ga0501076_0135725 3300049592 Bacteria 1997
194 Ga0501077_0002244 3300049593 Bacteria 11652
195 Ga0501077_0026046 3300049593 Bacteria 3711
196 Ga0501079_0148381 3300049741 Bacteria 1828
197 Ga0501081_0011430 3300049743 Bacteria 5808
198 Ga0501081_0144880 3300049743 Bacteria 1704
199 Ga0501044_0032773 3300049823 Bacteria 5461
200 Ga0501045_0001980 3300049824 Bacteria 13844
201 Ga0501045_0015176 3300049824 Bacteria 5467
202 Ga0501045_0235153 3300049824 Bacteria 1364
203 nmdc:mga03683_50685_c1 3300050489 Bacteria 1731
204 nmdc:mga00v17_32687_c1 3300050491 Bacteria 3077
205 nmdc:mga00v17_3713_c1 3300050491 Bacteria 7890
206 nmdc:mga06z11_115509_c1 3300050494 Bacteria 1491
207 nmdc:mga05p37_225030_c1 3300050507 Bacteria 2262
208 nmdc:mga05p37_26322_c1 3300050507 Bacteria 7076
209 nmdc:mga05p37_358_c1 3300050507 Bacteria 49067
210 nmdc:mga09592_117707_c1 3300050508 Bacteria 2281
211 nmdc:mga09592_13108_c1 3300050508 Bacteria 6765
212 nmdc:mga09592_159087_c1 3300050508 Bacteria 1951
213 nmdc:mga09592_1808_c1 3300050508 Bacteria 17167
214 nmdc:mga09592_58925_c1 3300050508 Bacteria 3247
215 nmdc:mga0qj67_161713_c1 3300050509 Bacteria 1818
216 nmdc:mga0qj67_478_c1 3300050509 Bacteria 27326
217 nmdc:mga0qj67_57037_c1 3300050509 Bacteria 3097
218 nmdc:mga0qj67_86645_c1 3300050509 Bacteria 2513
219 nmdc:mga06r32_208826_c1 3300050510 Bacteria 1940
220 nmdc:mga06r32_221403_c1 3300050510 Bacteria 1881
221 nmdc:mga06r32_5845_c1 3300050510 Bacteria 11072
222 nmdc:mga08y16_9732_c1 3300050511 Bacteria 10093
223 Ga0495619_0011912 3300053085 Bacteria 5476
224 Ga0500644_0013730 3300053088 Bacteria 2268
225 Ga0500594_0018655 3300053118 Bacteria 1711
226 Ga0501084_0007124 3300054114 Bacteria 9213
227 Ga0501084_0048266 3300054114 Bacteria 3564
228 Ga0501082_0003597 3300060353 Bacteria 13539
229 Ga0501082_0049923 3300060353 Bacteria 3608
230 Ga0530510_0004745 3300061734 Bacteria 9411
231 Ga0530510_0074442 3300061734 Bacteria 2465
232 2643852359 2643221567 Bacteria 4163945
233 2644136881 2643221624 Bacteria 4384879
234 2644516932 2643221692 Bacteria 7282860
235 2738868140 2738541305 Bacteria 4910150
236 2739235952 2738543011 Bacteria 5731169
237 2819666430 2818991458 Bacteria 4794049
238 2819691595 2818991462 Bacteria 4320267
239 2819729625 2818991469 Bacteria 4644110
240 2889305550 2889300758 Bacteria 5690814
241 2939743686 2939743619 Bacteria 5762299
242 2984524078 2984523437 Bacteria 4508481
243 Ga0075428_100025115
244 JGI25407J50210_10004239
245 Ga0070668_100190967
246 Ga0070714_100022149
247 Ga0070706_100005952
248 Ga0070706_100007953
249 Ga0070707_100046928
250 Ga0070698_100006650
251 Ga0070698_100012045
252 Ga0070699_100004229
253 Ga0070697_100000297
254 Ga0068860_100030440
255 Ga0081455_10006278
256 Ga0081455_10008801
257 Ga0081455_10019099
258 Ga0081538_10000319
259 Ga0081538_10004044
260 Ga0070717_10018616
261 Ga0070717_10394099
262 Ga0075364_10012241
263 Ga0075364_10032417
264 Ga0075364_10174194
265 Ga0075362_10142969
266 Ga0075367_10071504
267 Ga0075367_10095033
268 Ga0075367_10214986
269 Ga0075428_100002257
270 Ga0075428_100021277
271 Ga0075428_100027914
272 Ga0075428_100259786
273 Ga0075430_100000652
274 Ga0075430_100006185
275 Ga0075430_100030731
276 Ga0075430_100157487
277 Ga0075431_100000615
278 Ga0075431_100002032
279 Ga0075431_100019993
280 Ga0075431_100129790
281 Ga0075431_100467935
282 Ga0075429_100001352
283 Ga0075429_100002198
284 Ga0099794_10056934
285 Ga0111539_10030620
286 Ga0111539_10127447
287 Ga0114129_10002086
288 Ga0114129_10033794
289 Ga0114129_10060032
290 Ga0114129_10116831
291 Ga0105243_10000176
292 Ga0105239_10053175
293 Ga0157321_1002373
294 Ga0157375_10422149
295 Ga0163163_10043482
296 Ga0157379_10040008
297 Ga0207685_10020418
298 Ga0207684_10183589
299 Ga0207657_10065585
300 Ga0207646_10001463
301 Ga0207664_10013585
302 Ga0207709_10000739
303 Ga0207428_10021005
304 Ga0207428_10090902
305 Ga0268266_10094322
306 Ga0268264_10230872
307 Ga0307515_10017172
308 Ga0307512_10001605
309 Ga0307512_10001664
310 Ga0307513_10004400
311 Ga0316576_10017585
312 Ga0316578_10012443
313 Ga0316577_10085856
314 Ga0307410_10002460
315 Ga0307410_10283409
316 Ga0307409_100149360
317 Ga0307414_10243719
318 Ga0307507_10009871
319 Ga0373923_0000357
320 Ga0373936_0004286
321 Ga0373943_0002302
322 Ga0316574_0005161
323 Ga0373924_0077253
324 Ga0373927_0109052
325 Ga0316582_0009718
326 Ga0373925_0026044
327 Ga0395905_0299930
328 Ga0395905_0412002
329 Ga0395901_0147520
330 Ga0436365_0581220
331 Ga0436365_1646100
332 Ga0439447_042938
333 Ga0439444_0010627
334 Ga0439464_0009241
335 Ga0466969_0011290
336 Ga0466972_0002145
337 Ga0466965_0000378
338 Ga0466966_0006817
339 Ga0466961_0003350
340 Ga0466970_0003109
341 Ga0466957_0068302
342 Ga0466957_0121727
343 Ga0466960_0000584
344 Ga0466960_0033837
345 Ga0466959_0002336
346 Ga0466958_0044002
347 Ga0466967_0095354
348 Ga0495603_0001653
349 Ga0495629_0015687
350 Ga0495651_0043132
351 Ga0495650_0027879
352 Ga0495582_0001847
353 Ga0495662_0003735
354 Ga0495664_0007935
355 Ga0495608_0167350
356 Ga0495618_0095369
357 Ga0495628_0101629
358 Ga0495630_0051953
359 Ga0495666_0001194
360 Ga0495652_0066714
361 Ga0495665_0002943
362 Ga0495640_0065160
363 Ga0495586_0018273
364 Ga0495587_0125386
365 Ga0495645_0084898
366 Ga0495645_0179496
367 Ga0495667_0208129
368 Ga0495658_0001184
369 Ga0495613_0049084
370 Ga0495624_0031508
371 Ga0495600_0012678
372 Ga0495581_0079666
373 Ga0495674_0100068
374 Ga0495674_0270424
375 Ga0495676_0029364
376 Ga0495684_0018048
377 Ga0495593_0015040
378 Ga0496100_0329768
379 Ga0496101_0123753
380 Ga0496101_0361358
381 Ga0496102_0000885
382 Ga0496102_0131906
383 Ga0496102_0188413
384 Ga0496102_0308727
385 Ga0496102_0312827
386 Ga0496103_0065404
387 Ga0496104_0003517
388 Ga0496104_0362906
389 Ga0496105_0004869
390 Ga0496105_0019249
391 Ga0496105_0090439
392 Ga0496108_0051543
393 Ga0496108_0059635
394 Ga0496108_0076550
395 Ga0496109_0096024
396 Ga0496109_0215712
397 Ga0496109_0415025
398 Ga0496110_0051890
399 Ga0496110_0107952
400 Ga0496111_0215742
401 Ga0496113_0002854
402 Ga0496114_0002534
403 Ga0496114_0004660
404 Ga0496114_0058586
405 Ga0496115_0032917
406 Ga0496115_0075026
407 Ga0501031_0095667
408 Ga0501033_0032647
409 Ga0501034_0037182
410 Ga0501036_0009661
411 Ga0501036_0427183
412 Ga0501037_0071937
413 Ga0501039_0017692
414 Ga0501039_0065059
415 Ga0501040_0002294
416 Ga0501040_0037338
417 Ga0501040_0153794
418 Ga0501041_0017221
419 Ga0501041_0019728
420 Ga0501041_0088938
421 Ga0501042_0008975
422 Ga0501042_0011037
423 Ga0501043_0017839
424 Ga0501046_0033392
425 Ga0501048_0020619
426 Ga0501067_0005106
427 Ga0501068_0010423
428 Ga0501071_0033525
429 Ga0501072_0014416
430 Ga0501072_0019852
431 Ga0501072_0067483
432 Ga0501074_0085032
433 Ga0501076_0021121
434 Ga0501076_0101517
435 Ga0501076_0135725
436 Ga0501077_0002244
437 Ga0501077_0026046
438 Ga0501079_0148381
439 Ga0501081_0011430
440 Ga0501081_0144880
441 Ga0501044_0032773
442 Ga0501045_0001980
443 Ga0501045_0015176
444 Ga0501045_0235153
445 nmdc:mga03683_50685_c1
446 nmdc:mga00v17_32687_c1
447 nmdc:mga00v17_3713_c1
448 nmdc:mga06z11_115509_c1
449 nmdc:mga05p37_225030_c1
450 nmdc:mga05p37_26322_c1
451 nmdc:mga05p37_358_c1
452 nmdc:mga09592_117707_c1
453 nmdc:mga09592_13108_c1
454 nmdc:mga09592_159087_c1
455 nmdc:mga09592_1808_c1
456 nmdc:mga09592_58925_c1
457 nmdc:mga0qj67_161713_c1
458 nmdc:mga0qj67_478_c1
459 nmdc:mga0qj67_57037_c1
460 nmdc:mga0qj67_86645_c1
461 nmdc:mga06r32_208826_c1
462 nmdc:mga06r32_221403_c1
463 nmdc:mga06r32_5845_c1
464 nmdc:mga08y16_9732_c1
465 Ga0495619_0011912
466 Ga0500644_0013730
467 Ga0500594_0018655
468 Ga0501084_0007124
469 Ga0501084_0048266
470 Ga0501082_0003597
471 Ga0501082_0049923
472 Ga0530510_0004745
473 Ga0530510_0074442
474 2643852359
475 2644136881
476 2644516932
477 2738868140
478 2739235952
479 2819666430
480 2819691595
481 2819729625
482 2889305550
483 2939743686
484 2984524078

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

80

334

0.97

PF01896

DNA_primase_S

DNA primase small subunit

185

307

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9296 1 284
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9295 1 310
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9266 1 310
2far-assembly2.cif.gz_B crystal structure of pseudomonas aeruginosa ligd polymerase domain with datp and manganese 0.9017 5 290
2iry-assembly1.cif.gz_A crystal structure of the polymerase domain from mycobacterium tuberculosis ligase d with dgtp and manganese. 0.8976 1 278
ID Description Score Start End Superfamily
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9476 13 291 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9474 13 291 3.90.920.10
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9345 13 291 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9312 13 291 3.90.920.10
af_P9WNV3_16_301_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9099 13 280 3.90.920.10
ID Description Score Start End GO Terms
AF-A0A6N7YT35-F1-model_v4 ATP-dependent DNA ligase 0.9747 1 296 GO:0016874
AF-A0A519FYF8-F1-model_v4 ATP-dependent DNA ligase 0.9681 138 306 GO:0016874
AF-X0Y047-F1-model_v4 DNA ligase D polymerase domain-containing protein 0.9624 101 248
AF-A0A7W0TAI8-F1-model_v4 DNA primase 0.9607 4 306
AF-A0A1Q7BZ75-F1-model_v4 DNA ligase D polymerase domain-containing protein 0.9605 4 307

Map