F350919

General Info

Members Datasets Scaffolds Average Seq Length
238 159 236 462

Family's Representative Sequence

Representative Sequence 3300009545|Ga0105237_10026251|Ga0105237_100262512
Length 526
Sequence MRGVVSVGRTHPATPPVVYRHHAPGAGRQPGEYFPFDHGRAPPAWSRPRGWILRARLSRLNFKFMANYDLIVIGAGPAGYVAAIKAAQLGKKVACVDKERYGGTCNNWGCIPTKALLKNAELFHTMKHRAAEFGFKIGSLEFDWGTIIKRSRTVSEKGSAGVDFLFKKNKIDALRGDASVEKPGEVKVKSADGKEEIHKATNILIATGCVSRPLPGLEFNGKNVIGSKEALQLPSQPKSIVIIGAGAIGVEFAYFFNAFGTKVTIVEMLPNLLPVEDTEVSQALEKSFAKQGITALLGHKTTKTEVSDSGVKITVADPKGAEKVLEAEMVLVAIGIAPVLPAGGLKFELVKGFLQTNDRYETSVKGIFAAGDIIGPPWLAHVASYEAVQAVEGMFNPKFKPKKVTTFPGCTYCHPQVASVGLTERAAKEAGKKFKVGKFPYMALGKARAIGETEGFVKLIVGEPHGEILGAHIIGADATEMIAELGLAITLEATLEEIEATIHAHPTLSEAVKEAVEVAAGHAIHI

Samples

Sample ID Description Type Environment
1 2718217752 Candidatus Xiphinematobacter sp. Idaho Grape Isolate Unclassified
2 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified
3 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
4 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
5 3300002155 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 Metagenome Rhizosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
31 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
32 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
52 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
78 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
81 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
82 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
83 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
84 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
85 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
86 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
87 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
88 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
89 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
90 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
91 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
92 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
93 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
94 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
95 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
96 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
97 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
98 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
99 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
100 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
101 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
102 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
103 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
104 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
105 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
106 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
107 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
108 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
109 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
110 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
111 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
112 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
113 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
114 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
115 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
116 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
117 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
118 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
121 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
122 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
123 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
124 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
125 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
126 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
127 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
128 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
129 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
130 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
131 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
132 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
146 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
147 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
148 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
150 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
151 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
152 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
153 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
154 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
155 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
156 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
157 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
158 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
159 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.48
Metatranscriptomes 1.26
Isolates 1.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.36
Nodule 0
Rhizoplane 0
Rhizosphere 92.44
Stem 0
Stem Tuber 0
Unclassified 4.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1001850 3300001977 Bacteria 3377
2 JGI24033J26618_1000186 3300002155 Bacteria 7493
3 rootH2_10004266 3300003320 Bacteria 68113
4 rootH2_10050598 3300003320 Bacteria 7256
5 rootH1_10023399 3300003316 Bacteria 14787
6 rootH1_10023399 3300003323 Bacteria 18842
7 Ga0058862_12811211 3300004803 Bacteria 2027
8 Ga0065704_10081325 3300005289 Bacteria 3780
9 Ga0070658_10001418 3300005327 Bacteria 20460
10 Ga0070658_10006746 3300005327 Bacteria 9293
11 Ga0070658_10017231 3300005327 Bacteria 5781
12 Ga0070658_10050243 3300005327 Bacteria 3379
13 Ga0068868_100023569 3300005338 Bacteria 4660
14 Ga0070660_100056533 3300005339 Bacteria 3036
15 Ga0070661_100001743 3300005344 Bacteria 15093
16 Ga0070661_100001947 3300005344 Bacteria 14290
17 Ga0070671_100143382 3300005355 Bacteria 2016
18 Ga0070674_100021581 3300005356 Bacteria 4139
19 Ga0070711_100004960 3300005439 Bacteria 7906
20 Ga0070662_100001905 3300005457 Bacteria 12813
21 Ga0068867_100000188 3300005459 Bacteria 40704
22 Ga0068867_100009466 3300005459 Bacteria 6870
23 Ga0070685_10002587 3300005466 Bacteria 9271
24 Ga0070685_10009191 3300005466 Bacteria 5101
25 Ga0068853_100000024 3300005539 Bacteria 139787
26 Ga0070686_100000151 3300005544 Bacteria 47752
27 Ga0070665_100097862 3300005548 Bacteria 2939
28 Ga0068855_100011335 3300005563 Bacteria 10762
29 Ga0070664_100000048 3300005564 Bacteria 72617
30 Ga0068857_100210986 3300005577 Bacteria 1772
31 Ga0068856_100001701 3300005614 Bacteria 22983
32 Ga0068856_100047762 3300005614 Bacteria 4218
33 Ga0068856_100238881 3300005614 Bacteria 1832
34 Ga0068852_100063291 3300005616 Bacteria 3221
35 Ga0068863_100019076 3300005841 Bacteria 6566
36 Ga0068858_100064584 3300005842 Bacteria 3388
37 Ga0081538_10040006 3300005981 Bacteria 2997
38 Ga0081540_1013414 3300005983 Bacteria 5326
39 Ga0070717_10000015 3300006028 Bacteria 208620
40 Ga0097621_100004939 3300006237 Bacteria 9351
41 Ga0097621_100080145 3300006237 Bacteria 2715
42 Ga0068871_100031448 3300006358 Bacteria 4186
43 Ga0075429_100040364 3300006880 Bacteria 4063
44 Ga0105240_10000007 3300009093 Bacteria 619357
45 Ga0111539_10008879 3300009094 Bacteria 12727
46 Ga0111539_10357544 3300009094 Bacteria 1699
47 Ga0105245_10075885 3300009098 Bacteria 3061
48 Ga0105243_10000023 3300009148 Bacteria 202230
49 Ga0105243_10003154 3300009148 Bacteria 13521
50 Ga0105237_10026251 3300009545 Bacteria 5952
51 Ga0105238_10000025 3300009551 Bacteria 196198
52 Ga0105239_10215575 3300010375 Bacteria 2152
53 Ga0157373_10000407 3300013100 Bacteria 34540
54 Ga0157370_10000230 3300013104 Bacteria 71559
55 Ga0157374_10000216 3300013296 Bacteria 53208
56 Ga0157378_10001310 3300013297 Bacteria 22382
57 Ga0163162_10123344 3300013306 Bacteria 2696
58 Ga0163162_10126577 3300013306 Bacteria 2661
59 Ga0157375_10001478 3300013308 Bacteria 20181
60 Ga0163163_10090660 3300014325 Bacteria 3070
61 Ga0157376_10000416 3300014969 Bacteria 27769
62 Ga0157376_10006040 3300014969 Bacteria 8512
63 Ga0206355_1411150 3300020076 Bacteria 1799
64 Ga0224712_10056968 3300022467 Bacteria 1543
65 Ga0209564_1002747 3300025295 Bacteria 13238
66 Ga0209050_1002322 3300025298 Bacteria 16736
67 Ga0207688_10005969 3300025901 Bacteria 6627
68 Ga0207645_10040752 3300025907 Bacteria 2974
69 Ga0207705_10050273 3300025909 Bacteria 3001
70 Ga0207695_10000061 3300025913 Bacteria 359827
71 Ga0207671_10012647 3300025914 Bacteria 6775
72 Ga0207663_10005640 3300025916 Bacteria 6322
73 Ga0207657_10067593 3300025919 Bacteria 3039
74 Ga0207649_10004650 3300025920 Bacteria 7431
75 Ga0207649_10008768 3300025920 Bacteria 5520
76 Ga0207681_10122561 3300025923 Bacteria 1909
77 Ga0207694_10000013 3300025924 Bacteria 384823
78 Ga0207706_10004620 3300025933 Bacteria 12913
79 Ga0207709_10000106 3300025935 Bacteria 129977
80 Ga0207709_10003362 3300025935 Bacteria 9554
81 Ga0207689_10000634 3300025942 Bacteria 33571
82 Ga0207689_10086967 3300025942 Bacteria 2568
83 Ga0207667_10010245 3300025949 Bacteria 10973
84 Ga0207677_10027598 3300026023 Bacteria 3579
85 Ga0207703_10029034 3300026035 Bacteria 4362
86 Ga0207703_10056493 3300026035 Bacteria 3197
87 Ga0207639_10000044 3300026041 Bacteria 139835
88 Ga0207702_10001504 3300026078 Bacteria 23046
89 Ga0207702_10014422 3300026078 Bacteria 6560
90 Ga0207641_10003211 3300026088 Bacteria 14636
91 Ga0207648_10000050 3300026089 Bacteria 108716
92 Ga0207648_10014231 3300026089 Bacteria 7358
93 Ga0207674_10058551 3300026116 Bacteria 3902
94 Ga0207698_10038986 3300026142 Bacteria 3516
95 Ga0207428_10023629 3300027907 Bacteria 5166
96 Ga0268266_10064091 3300028379 Bacteria 3174
97 Ga0268265_10235964 3300028380 Bacteria 1611
98 Ga0265337_1000457 3300028556 Bacteria 21660
99 Ga0265337_1012854 3300028556 Bacteria 2829
100 Ga0265319_1000130 3300028563 Bacteria 55833
101 Ga0265319_1007524 3300028563 Bacteria 4884
102 Ga0265319_1008376 3300028563 Bacteria 4539
103 Ga0265319_1008384 3300028563 Bacteria 4537
104 Ga0265319_1012185 3300028563 Bacteria 3485
105 Ga0265318_10000936 3300028577 Bacteria 18877
106 Ga0265318_10006054 3300028577 Bacteria 5607
107 Ga0265318_10008162 3300028577 Bacteria 4678
108 Ga0265318_10016277 3300028577 Bacteria 3076
109 Ga0265318_10045475 3300028577 Bacteria 1659
110 Ga0265323_10003214 3300028653 Bacteria 7279
111 Ga0265323_10037682 3300028653 Bacteria 1770
112 Ga0265322_10025150 3300028654 Bacteria 1703
113 Ga0265338_10000937 3300028800 Bacteria 49245
114 Ga0265338_10004661 3300028800 Bacteria 18419
115 Ga0265338_10023683 3300028800 Bacteria 6299
116 Ga0265338_10032396 3300028800 Archaea 5099
117 Ga0265338_10074749 3300028800 Bacteria 2880
118 Ga0265328_10000330 3300031239 Bacteria 22114
119 Ga0265320_10001147 3300031240 Bacteria 19490
120 Ga0265320_10002997 3300031240 Bacteria 11533
121 Ga0265320_10004576 3300031240 Bacteria 9047
122 Ga0265325_10047782 3300031241 Bacteria 2214
123 Ga0265340_10002459 3300031247 Bacteria 10539
124 Ga0265339_10057557 3300031249 Bacteria 2102
125 Ga0265331_10008165 3300031250 Bacteria 5976
126 Ga0265327_10000601 3300031251 Bacteria 59701
127 Ga0265327_10001936 3300031251 Bacteria 23873
128 Ga0265327_10014554 3300031251 Bacteria 5136
129 Ga0265316_10034949 3300031344 Bacteria 4079
130 Ga0265316_10074119 3300031344 Bacteria 2620
131 Ga0265316_10080451 3300031344 Bacteria 2499
132 Ga0307408_100000035 3300031548 Bacteria 205352
133 Ga0307408_100000053 3300031548 Bacteria 147370
134 Ga0265313_10000695 3300031595 Bacteria 34649
135 Ga0265313_10004046 3300031595 Bacteria 11429
136 Ga0307508_10001637 3300031616 Bacteria 24947
137 Ga0265314_10015863 3300031711 Bacteria 5966
138 Ga0307410_10000049 3300031852 Bacteria 42188
139 Ga0307406_10114614 3300031901 Bacteria 1862
140 Ga0307407_10000352 3300031903 Bacteria 13844
141 Ga0307407_10010688 3300031903 Bacteria 4339
142 Ga0307412_10000020 3300031911 Bacteria 258377
143 Ga0307409_100000002 3300031995 Bacteria 93798
144 Ga0307416_100000110 3300032002 Bacteria 50434
145 Ga0307414_10000045 3300032004 Bacteria 136797
146 Ga0373959_0000335 3300034820 Bacteria 9599
147 Ga0316574_0083569 3300035398 Bacteria 2030
148 Ga0373927_0026263 3300035695 Bacteria 3805
149 Ga0373937_0108132 3300036401 Bacteria 2586
150 Ga0395899_0000020 3300037312 Bacteria 404354
151 Ga0395900_0177855 3300037418 Bacteria 2164
152 Ga0395898_0000005 3300037466 Bacteria 621247
153 Ga0395905_0000036 3300037471 Bacteria 271733
154 Ga0395901_0055575 3300038443 Bacteria 4117
155 Ga0395901_0060489 3300038443 Bacteria 3942
156 Ga0436365_0495790 3300039437 Bacteria 3289
157 Ga0439453_0000216 3300041408 Bacteria 5679
158 Ga0450890_000027 3300042127 Bacteria 36370
159 Ga0450892_001267 3300042130 Bacteria 2563
160 Ga0450893_0000052 3300042532 Bacteria 12216
161 Ga0451577_0001851 3300042876 Bacteria 26948
162 Ga0451577_0003560 3300042876 Bacteria 17186
163 Ga0451577_0090101 3300042876 Bacteria 2737
164 Ga0466969_0006861 3300044656 Bacteria 6060
165 Ga0453683_0001549 3300044673 Bacteria 19494
166 Ga0466965_0055202 3300044683 Bacteria 1976
167 Ga0466961_0010499 3300044693 Bacteria 5907
168 Ga0466971_0000006 3300044719 Bacteria 128202
169 Ga0451576_0001983 3300045051 Bacteria 32524
170 Ga0451576_0007018 3300045051 Bacteria 13617
171 Ga0451576_0008948 3300045051 Bacteria 11678
172 Ga0451576_0038297 3300045051 Bacteria 5074
173 Ga0451576_0154526 3300045051 Bacteria 2393
174 Ga0466967_0099108 3300045976 Bacteria 2661
175 Ga0495638_0008720 3300046460 Bacteria 7168
176 Ga0495643_0000083 3300046522 Bacteria 158660
177 Ga0495643_0001096 3300046522 Bacteria 26948
178 Ga0495615_0016621 3300048090 Bacteria 1590
179 Ga0496121_0029291 3300048924 Bacteria 5097
180 Ga0496125_0000087 3300048928 Bacteria 215983
181 Ga0501031_0003298 3300049568 Bacteria 10354
182 Ga0501032_0000426 3300049569 Bacteria 34927
183 Ga0501032_0000745 3300049569 Bacteria 26459
184 Ga0501032_0005121 3300049569 Bacteria 9777
185 Ga0501032_0150109 3300049569 Bacteria 1532
186 Ga0501033_0000001 3300049570 Bacteria 795921
187 Ga0501033_0000033 3300049570 Bacteria 154380
188 Ga0501033_0005513 3300049570 Bacteria 10011
189 Ga0501033_0012871 3300049570 Bacteria 6381
190 Ga0501034_0103241 3300049571 Bacteria 2844
191 Ga0501036_0216160 3300049572 Bacteria 1610
192 Ga0501037_0000178 3300049573 Bacteria 59279
193 Ga0501037_0024071 3300049573 Bacteria 4502
194 Ga0501037_0045368 3300049573 Bacteria 3227
195 Ga0501037_0077906 3300049573 Bacteria 2405
196 Ga0501038_0000283 3300049574 Bacteria 43189
197 Ga0501038_0003275 3300049574 Bacteria 15091
198 Ga0501039_0016080 3300049575 Bacteria 5730
199 Ga0501039_0026763 3300049575 Bacteria 4432
200 Ga0501042_0007405 3300049578 Bacteria 7188
201 Ga0501043_0000227 3300049579 Bacteria 51267
202 Ga0501043_0007927 3300049579 Bacteria 8393
203 Ga0501043_0049941 3300049579 Bacteria 3288
204 Ga0501046_0014662 3300049580 Bacteria 6601
205 Ga0501046_0017223 3300049580 Bacteria 6037
206 Ga0501046_0082878 3300049580 Bacteria 2476
207 Ga0501047_0000741 3300049581 Bacteria 34031
208 Ga0501047_0022015 3300049581 Bacteria 6122
209 Ga0501047_0038878 3300049581 Bacteria 4602
210 Ga0501047_0066023 3300049581 Bacteria 3487
211 Ga0501047_0070572 3300049581 Bacteria 3363
212 Ga0501048_0005753 3300049582 Bacteria 9419
213 Ga0501070_0009556 3300049586 Bacteria 8192
214 Ga0501070_0009654 3300049586 Bacteria 8158
215 Ga0501080_0005721 3300049742 Bacteria 11120
216 Ga0501080_0100731 3300049742 Bacteria 2680
217 Ga0501083_0002290 3300049744 Bacteria 13111
218 Ga0501035_0000018 3300049822 Bacteria 241543
219 Ga0501035_0000537 3300049822 Bacteria 42223
220 Ga0501035_0007276 3300049822 Bacteria 10354
221 Ga0501035_0008262 3300049822 Bacteria 9698
222 Ga0501044_0000042 3300049823 Bacteria 152693
223 Ga0501044_0001807 3300049823 Bacteria 24925
224 Ga0501044_0002299 3300049823 Bacteria 21782
225 Ga0501044_0218821 3300049823 Bacteria 1855
226 nmdc:mga09592_11700_c1 3300050508 Bacteria 7136
227 nmdc:mga08y16_4240_c1 3300050511 Bacteria 14963
228 nmdc:mga0rr50_2982_c1 3300050513 Bacteria 5207
229 Ga0500610_0081788 3300053079 Bacteria 1683
230 Ga0500554_030609 3300053102 Bacteria 1583
231 Ga0500628_000287 3300053129 Bacteria 9626
232 Ga0500559_0004094 3300053136 Bacteria 6994
233 Ga0500616_0000002 3300053153 Bacteria 1611257
234 Ga0500616_0004534 3300053153 Bacteria 9851
235 Ga0501082_0061321 3300060353 Bacteria 3238
236 Ga0466962_0000008 3300061719 Bacteria 157750

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049578 Ga0501042_0007405 Ga0501042_0007405_565_1740 386
2 3300046460 Ga0495638_0008720 Ga0495638_0008720_18_1247 395
3 3300046522 Ga0495643_0000083 Ga0495643_0000083_55677_57080 425
4 3300049570 Ga0501033_0012871 Ga0501033_0012871_4859_6262 425
5 3300049573 Ga0501037_0045368 Ga0501037_0045368_374_1777 425
6 3300048090 Ga0495615_0016621 Ga0495615_0016621_174_1577 426
7 3300053102 Ga0500554_030609 Ga0500554_030609_63_1466 426
8 3300053129 Ga0500628_000287 Ga0500628_000287_7306_8709 426
9 3300005466 Ga0070685_10009191 Ga0070685_100091913 428
10 3300005981 Ga0081538_10040006 Ga0081538_100400061 428
11 3300009551 Ga0105238_10000025 Ga0105238_10000025113 428
12 3300025924 Ga0207694_10000013 Ga0207694_10000013135 428
13 3300049581 Ga0501047_0000741 Ga0501047_0000741_16758_18161 428
14 3300049744 Ga0501083_0002290 Ga0501083_0002290_3654_5039 428
15 3300049822 Ga0501035_0007276 Ga0501035_0007276_2571_3974 428
16 3300049823 Ga0501044_0001807 Ga0501044_0001807_16942_18345 428
17 3300005289 Ga0065704_10081325 Ga0065704_100813251 430
18 3300005466 Ga0070685_10002587 Ga0070685_100025877 443
19 3300034820 Ga0373959_0000335 Ga0373959_0000335_1854_3257 443
20 3300039437 Ga0436365_0495790 Ga0436365_0495790_386_1765 443
21 3300005355 Ga0070671_100143382 Ga0070671_1001433822 447
22 3300013306 Ga0163162_10123344 Ga0163162_101233442 447
23 3300028800 Ga0265338_10004661 Ga0265338_1000466110 454
24 3300028800 Ga0265338_10032396 Ga0265338_100323963 454
25 iso_pu_bacteria 2786546548 2787505935 454
26 iso_pu_bacteria 2786546940 2788436523 454
27 3300006880 Ga0075429_100040364 Ga0075429_1000403643 455
28 3300009094 Ga0111539_10008879 Ga0111539_100088799 455
29 3300025295 Ga0209564_1002747 Ga0209564_10027479 455
30 3300027907 Ga0207428_10023629 Ga0207428_100236292 455
31 3300031239 Ga0265328_10000330 Ga0265328_100003304 455
32 3300035695 Ga0373927_0026263 Ga0373927_0026263_722_2140 455
33 3300048924 Ga0496121_0029291 Ga0496121_0029291_598_2016 455
34 3300049581 Ga0501047_0070572 Ga0501047_0070572_825_2288 455
35 3300050508 nmdc:mga09592_11700_c1 nmdc:mga09592_11700_c1_1558_2976 455
36 3300050511 nmdc:mga08y16_4240_c1 nmdc:mga08y16_4240_c1_3598_5007 455
37 3300053079 Ga0500610_0081788 Ga0500610_0081788_131_1549 455
38 3300053153 Ga0500616_0000002 Ga0500616_0000002_165356_166774 455
39 iso_pu_bacteria 2718217752 2718716628 455
40 3300003320 rootH2_10050598 rootH2_100505989 456
41 3300005327 Ga0070658_10017231 Ga0070658_100172314 456
42 3300005338 Ga0068868_100023569 Ga0068868_1000235694 456
43 3300005459 Ga0068867_100009466 Ga0068867_1000094667 456
44 3300005577 Ga0068857_100210986 Ga0068857_1002109862 456
45 3300005614 Ga0068856_100047762 Ga0068856_1000477622 456
46 3300005614 Ga0068856_100238881 Ga0068856_1002388811 456
47 3300006028 Ga0070717_10000015 Ga0070717_100000155 456
48 3300006237 Ga0097621_100004939 Ga0097621_10000493911 456
49 3300006358 Ga0068871_100031448 Ga0068871_1000314484 456
50 3300014325 Ga0163163_10090660 Ga0163163_100906603 456
51 3300025909 Ga0207705_10050273 Ga0207705_100502731 456
52 3300025942 Ga0207689_10000634 Ga0207689_1000063425 456
53 3300026023 Ga0207677_10027598 Ga0207677_100275983 456
54 3300026078 Ga0207702_10014422 Ga0207702_100144223 456
55 3300026089 Ga0207648_10014231 Ga0207648_100142316 456
56 3300026116 Ga0207674_10058551 Ga0207674_100585512 456
57 3300028556 Ga0265337_1000457 Ga0265337_10004573 456
58 3300028556 Ga0265337_1012854 Ga0265337_10128543 456
59 3300028563 Ga0265319_1000130 Ga0265319_100013033 456
60 3300028563 Ga0265319_1007524 Ga0265319_10075243 456
61 3300028563 Ga0265319_1008376 Ga0265319_10083764 456
62 3300028563 Ga0265319_1008384 Ga0265319_10083846 456
63 3300028577 Ga0265318_10000936 Ga0265318_1000093611 456
64 3300028577 Ga0265318_10006054 Ga0265318_100060543 456
65 3300028577 Ga0265318_10008162 Ga0265318_100081623 456
66 3300028577 Ga0265318_10016277 Ga0265318_100162773 456
67 3300028653 Ga0265323_10003214 Ga0265323_100032146 456
68 3300028653 Ga0265323_10037682 Ga0265323_100376821 456
69 3300028654 Ga0265322_10025150 Ga0265322_100251501 456
70 3300028800 Ga0265338_10000937 Ga0265338_1000093734 456
71 3300028800 Ga0265338_10023683 Ga0265338_100236834 456
72 3300028800 Ga0265338_10074749 Ga0265338_100747492 456
73 3300031240 Ga0265320_10002997 Ga0265320_100029974 456
74 3300031240 Ga0265320_10004576 Ga0265320_100045765 456
75 3300031247 Ga0265340_10002459 Ga0265340_100024597 456
76 3300031249 Ga0265339_10057557 Ga0265339_100575572 456
77 3300031251 Ga0265327_10001936 Ga0265327_1000193615 456
78 3300031344 Ga0265316_10034949 Ga0265316_100349494 456
79 3300031344 Ga0265316_10074119 Ga0265316_100741193 456
80 3300031344 Ga0265316_10080451 Ga0265316_100804512 456
81 3300031548 Ga0307408_100000053 Ga0307408_1000000535 456
82 3300031595 Ga0265313_10000695 Ga0265313_1000069520 456
83 3300031595 Ga0265313_10004046 Ga0265313_1000404616 456
84 3300031616 Ga0307508_10001637 Ga0307508_100016371 456
85 3300031711 Ga0265314_10015863 Ga0265314_100158632 456
86 3300031852 Ga0307410_10000049 Ga0307410_100000494 456
87 3300031995 Ga0307409_100000002 Ga0307409_1000000025 456
88 3300032002 Ga0307416_100000110 Ga0307416_10000011031 456
89 3300037471 Ga0395905_0000036 Ga0395905_0000036_208297_209694 456
90 3300042876 Ga0451577_0003560 Ga0451577_0003560_9527_10924 456
91 3300042876 Ga0451577_0090101 Ga0451577_0090101_64_1461 456
92 3300044673 Ga0453683_0001549 Ga0453683_0001549_3742_5139 456
93 3300045051 Ga0451576_0001983 Ga0451576_0001983_28403_29800 456
94 3300045051 Ga0451576_0008948 Ga0451576_0008948_6210_7607 456
95 3300045051 Ga0451576_0038297 Ga0451576_0038297_3489_4886 456
96 3300045051 Ga0451576_0154526 Ga0451576_0154526_965_2362 456
97 3300049569 Ga0501032_0000426 Ga0501032_0000426_16788_18182 456
98 3300049569 Ga0501032_0000745 Ga0501032_0000745_7346_8743 456
99 3300049569 Ga0501032_0005121 Ga0501032_0005121_936_2333 456
100 3300049570 Ga0501033_0005513 Ga0501033_0005513_5791_7188 456
101 3300049571 Ga0501034_0103241 Ga0501034_0103241_860_2254 456
102 3300049572 Ga0501036_0216160 Ga0501036_0216160_150_1544 456
103 3300049573 Ga0501037_0024071 Ga0501037_0024071_2840_4237 456
104 3300049573 Ga0501037_0077906 Ga0501037_0077906_534_1931 456
105 3300049574 Ga0501038_0003275 Ga0501038_0003275_4790_6187 456
106 3300049575 Ga0501039_0026763 Ga0501039_0026763_196_1593 456
107 3300049579 Ga0501043_0049941 Ga0501043_0049941_1338_2735 456
108 3300049580 Ga0501046_0014662 Ga0501046_0014662_2812_4209 456
109 3300049580 Ga0501046_0017223 Ga0501046_0017223_560_1954 456
110 3300049580 Ga0501046_0082878 Ga0501046_0082878_273_1670 456
111 3300049581 Ga0501047_0038878 Ga0501047_0038878_2812_4209 456
112 3300049581 Ga0501047_0066023 Ga0501047_0066023_1943_3337 456
113 3300049582 Ga0501048_0005753 Ga0501048_0005753_5843_7240 456
114 3300049586 Ga0501070_0009556 Ga0501070_0009556_4879_6276 456
115 3300049822 Ga0501035_0000537 Ga0501035_0000537_16417_17811 456
116 3300049822 Ga0501035_0008262 Ga0501035_0008262_4082_5479 456
117 3300049823 Ga0501044_0002299 Ga0501044_0002299_1996_3390 456
118 3300049823 Ga0501044_0218821 Ga0501044_0218821_33_1430 456
119 3300060353 Ga0501082_0061321 Ga0501082_0061321_193_1590 456
120 3300005457 Ga0070662_100001905 Ga0070662_10000190511 457
121 3300005544 Ga0070686_100000151 Ga0070686_10000015117 457
122 3300025933 Ga0207706_10004620 Ga0207706_1000462010 457
123 3300028563 Ga0265319_1012185 Ga0265319_10121852 457
124 3300028577 Ga0265318_10045475 Ga0265318_100454751 457
125 3300031240 Ga0265320_10001147 Ga0265320_1000114710 457
126 3300037418 Ga0395900_0177855 Ga0395900_0177855_129_1532 457
127 3300038443 Ga0395901_0055575 Ga0395901_0055575_2333_3736 457
128 3300044656 Ga0466969_0006861 Ga0466969_0006861_1889_3292 457
129 3300044683 Ga0466965_0055202 Ga0466965_0055202_540_1943 457
130 3300044693 Ga0466961_0010499 Ga0466961_0010499_1255_2658 457
131 3300005327 Ga0070658_10050243 Ga0070658_100502431 458
132 3300006237 Ga0097621_100080145 Ga0097621_1000801452 458
133 3300010375 Ga0105239_10215575 Ga0105239_102155752 458
134 3300013296 Ga0157374_10000216 Ga0157374_1000021633 458
135 3300014969 Ga0157376_10000416 Ga0157376_1000041621 458
136 3300035398 Ga0316574_0083569 Ga0316574_0083569_226_1602 458
137 3300038443 Ga0395901_0060489 Ga0395901_0060489_1270_2652 458
138 3300042876 Ga0451577_0001851 Ga0451577_0001851_22837_24213 458
139 3300045051 Ga0451576_0007018 Ga0451576_0007018_5721_7106 458
140 3300004803 Ga0058862_12811211 Ga0058862_128112112 459
141 3300005327 Ga0070658_10001418 Ga0070658_1000141812 459
142 3300005339 Ga0070660_100056533 Ga0070660_1000565331 459
143 3300005439 Ga0070711_100004960 Ga0070711_1000049603 459
144 3300005548 Ga0070665_100097862 Ga0070665_1000978622 459
145 3300005563 Ga0068855_100011335 Ga0068855_1000113353 459
146 3300005616 Ga0068852_100063291 Ga0068852_1000632911 459
147 3300005842 Ga0068858_100064584 Ga0068858_1000645842 459
148 3300009093 Ga0105240_10000007 Ga0105240_100000076 459
149 3300009148 Ga0105243_10003154 Ga0105243_100031541 459
150 3300009545 Ga0105237_10026251 Ga0105237_100262512 459
151 3300020076 Ga0206355_1411150 Ga0206355_14111502 459
152 3300022467 Ga0224712_10056968 Ga0224712_100569681 459
153 3300025298 Ga0209050_1002322 Ga0209050_10023223 459
154 3300025913 Ga0207695_10000061 Ga0207695_10000061280 459
155 3300025914 Ga0207671_10012647 Ga0207671_100126472 459
156 3300025916 Ga0207663_10005640 Ga0207663_100056403 459
157 3300025919 Ga0207657_10067593 Ga0207657_100675931 459
158 3300025923 Ga0207681_10122561 Ga0207681_101225612 459
159 3300025935 Ga0207709_10003362 Ga0207709_100033621 459
160 3300025949 Ga0207667_10010245 Ga0207667_100102454 459
161 3300026035 Ga0207703_10029034 Ga0207703_100290343 459
162 3300026035 Ga0207703_10056493 Ga0207703_100564933 459
163 3300026142 Ga0207698_10038986 Ga0207698_100389862 459
164 3300028379 Ga0268266_10064091 Ga0268266_100640912 459
165 3300031251 Ga0265327_10014554 Ga0265327_100145544 459
166 3300049742 Ga0501080_0005721 Ga0501080_0005721_5850_7232 459
167 3300049742 Ga0501080_0100731 Ga0501080_0100731_830_2218 459
168 3300050513 nmdc:mga0rr50_2982_c1 nmdc:mga0rr50_2982_c1_826_2205 459
169 3300053153 Ga0500616_0004534 Ga0500616_0004534_518_1906 459
170 3300001977 JGI24746J21847_1001850 JGI24746J21847_10018503 460
171 3300002155 JGI24033J26618_1000186 JGI24033J26618_10001865 460
172 3300003320 rootH2_10004266 rootH2_1000426647 460
173 3300003323 rootH1_10023399 rootH1_100233997 460
174 3300005327 Ga0070658_10006746 Ga0070658_100067465 460
175 3300005344 Ga0070661_100001743 Ga0070661_10000174316 460
176 3300005344 Ga0070661_100001947 Ga0070661_1000019477 460
177 3300005356 Ga0070674_100021581 Ga0070674_1000215813 460
178 3300005459 Ga0068867_100000188 Ga0068867_10000018826 460
179 3300005539 Ga0068853_100000024 Ga0068853_10000002423 460
180 3300005564 Ga0070664_100000048 Ga0070664_10000004864 460
181 3300005614 Ga0068856_100001701 Ga0068856_10000170119 460
182 3300005841 Ga0068863_100019076 Ga0068863_1000190766 460
183 3300005983 Ga0081540_1013414 Ga0081540_10134142 460
184 3300009094 Ga0111539_10357544 Ga0111539_103575442 460
185 3300009098 Ga0105245_10075885 Ga0105245_100758852 460
186 3300009148 Ga0105243_10000023 Ga0105243_1000002343 460
187 3300013100 Ga0157373_10000407 Ga0157373_1000040728 460
188 3300013104 Ga0157370_10000230 Ga0157370_1000023043 460
189 3300013297 Ga0157378_10001310 Ga0157378_100013109 460
190 3300013306 Ga0163162_10126577 Ga0163162_101265772 460
191 3300013308 Ga0157375_10001478 Ga0157375_100014789 460
192 3300014969 Ga0157376_10006040 Ga0157376_100060406 460
193 3300025901 Ga0207688_10005969 Ga0207688_100059692 460
194 3300025907 Ga0207645_10040752 Ga0207645_100407523 460
195 3300025920 Ga0207649_10004650 Ga0207649_100046507 460
196 3300025920 Ga0207649_10008768 Ga0207649_100087685 460
197 3300025935 Ga0207709_10000106 Ga0207709_1000010683 460
198 3300025942 Ga0207689_10086967 Ga0207689_100869673 460
199 3300026041 Ga0207639_10000044 Ga0207639_1000004421 460
200 3300026078 Ga0207702_10001504 Ga0207702_100015045 460
201 3300026088 Ga0207641_10003211 Ga0207641_100032116 460
202 3300026089 Ga0207648_10000050 Ga0207648_10000050110 460
203 3300028380 Ga0268265_10235964 Ga0268265_102359641 460
204 3300031241 Ga0265325_10047782 Ga0265325_100477822 460
205 3300031250 Ga0265331_10008165 Ga0265331_100081655 460
206 3300031251 Ga0265327_10000601 Ga0265327_1000060120 460
207 3300031548 Ga0307408_100000035 Ga0307408_100000035193 460
208 3300031901 Ga0307406_10114614 Ga0307406_101146141 460
209 3300031903 Ga0307407_10000352 Ga0307407_100003525 460
210 3300031903 Ga0307407_10010688 Ga0307407_100106884 460
211 3300031911 Ga0307412_10000020 Ga0307412_10000020193 460
212 3300032004 Ga0307414_10000045 Ga0307414_1000004528 460
213 3300036401 Ga0373937_0108132 Ga0373937_0108132_247_1635 460
214 3300037312 Ga0395899_0000020 Ga0395899_0000020_293247_294638 460
215 3300037466 Ga0395898_0000005 Ga0395898_0000005_285760_287151 460
216 3300041408 Ga0439453_0000216 Ga0439453_0000216_4081_5463 460
217 3300042127 Ga0450890_000027 Ga0450890_000027_25044_26426 460
218 3300042130 Ga0450892_001267 Ga0450892_001267_175_1557 460
219 3300042532 Ga0450893_0000052 Ga0450893_0000052_2660_4042 460
220 3300044719 Ga0466971_0000006 Ga0466971_0000006_119161_120552 460
221 3300045976 Ga0466967_0099108 Ga0466967_0099108_999_2390 460
222 3300046522 Ga0495643_0001096 Ga0495643_0001096_10713_12101 460
223 3300048928 Ga0496125_0000087 Ga0496125_0000087_109547_110938 460
224 3300049568 Ga0501031_0003298 Ga0501031_0003298_3315_4706 460
225 3300049569 Ga0501032_0150109 Ga0501032_0150109_37_1419 460
226 3300049570 Ga0501033_0000001 Ga0501033_0000001_444082_445473 460
227 3300049570 Ga0501033_0000033 Ga0501033_0000033_25430_26821 460
228 3300049573 Ga0501037_0000178 Ga0501037_0000178_53275_54666 460
229 3300049574 Ga0501038_0000283 Ga0501038_0000283_7571_8962 460
230 3300049575 Ga0501039_0016080 Ga0501039_0016080_1472_2863 460
231 3300049579 Ga0501043_0000227 Ga0501043_0000227_3803_5194 460
232 3300049579 Ga0501043_0007927 Ga0501043_0007927_2146_3537 460
233 3300049581 Ga0501047_0022015 Ga0501047_0022015_677_2068 460
234 3300049586 Ga0501070_0009654 Ga0501070_0009654_1792_3183 460
235 3300049822 Ga0501035_0000018 Ga0501035_0000018_218460_219851 460
236 3300049823 Ga0501044_0000042 Ga0501044_0000042_51630_53021 460
237 3300053136 Ga0500559_0004094 Ga0500559_0004094_551_1933 460
238 3300061719 Ga0466962_0000008 Ga0466962_0000008_40230_41621 460

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02852

Pyr_redox_dim

Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

407

516

0.99

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

239

320

0.95

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

68

387

0.95

PF00890

FAD_binding_2

FAD binding domain

69

109

0.91

PF01134

GIDA

Glucose inhibited division protein A

69

135

0.89

PF12831

FAD_oxidored

FAD dependent oxidoreductase

69

133

0.86

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

72

133

0.81

PF13434

Lys_Orn_oxgnase

L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

162

296

0.78

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

178

371

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
6uzi-assembly2.cif.gz_C crystal structure of dihydrolipoyl dehydrogenase from elizabethkingia anophelis nuhp1 0.9719 3 460
6i4p-assembly1.cif.gz_A crystal structure of the disease-causing g194c mutant of the human dihydrolipoamide dehydrogenase 0.9703 3 460
7zyt-assembly1.cif.gz_B crystal structure of the i318t pathogenic variant of the human dihydrolipoamide dehydrogenase 0.9695 3 460
7psc-assembly1.cif.gz_B crystal structure of the disease-causing i358t mutant of the human dihydrolipoamide dehydrogenase 0.9684 3 460
5u8w-assembly1.cif.gz_B dihydrolipoamide dehydrogenase (lpdg) from pseudomonas aeruginosa bound to nadh 0.9675 3 460
ID Description Score Start End Superfamily
1ebdA03 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.99 341 450 3.30.390.30
af_Q8I5A0_386_506_3.30.390.30 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9789 341 453 3.30.390.30
6bz0A03 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.977 341 460 3.30.390.30
1dxlB03 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9717 341 460 3.30.390.30
3l8kB03 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9711 341 452 3.30.390.30
ID Description Score Start End GO Terms
AF-A0A4Q3H0I3-F1-model_v4 deleted 0.9958 34 410
AF-A0A4Q3H0I3-F1-model_v4 deleted 0.9932 34 410
AF-A0A2W6T7S9-F1-model_v4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) 0.9926 341 460 GO:0004148
GO:0005737
GO:0006090
GO:0006103
GO:0050660
AF-Q1N995-F1-model_v4 Pyruvate dehydrogenase complex, E3 component, lipoamidedehydrogenase, putative 0.9906 367 460 GO:0004148
GO:0006090
GO:0006103
GO:0050660
AF-A0A4Q3NV27-F1-model_v4 deleted 0.99 355 460

Feature Viewer

pLDDT pTM Quality
94.6 0.91 High
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Predicted Structure (AlphaFold2)

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