F349428

General Info

Members Datasets Scaffolds Average Seq Length
236 172 472 304

Family's Representative Sequence

Representative Sequence 3300048916|Ga0496113_0222651|Ga0496113_0222651_77_1132
Length 351
Sequence MSEFAELRPSAFAIAYRMLGSVSEAEDVVQEGFLRLHRARAGGERIESPRAYLSTVVSRLSLDQLRSARVRRETYVGEWLPEPLITEDDPARKAEMADSVSHAVLVLLESLSPEQRAAFLLREVFEEPYERIAEIVGTSVPNARQLATRARRHVAERRPRFAATREQRDELANRFFKAVEEGDLEGLEQLLAHDVVLHGDGGGKVPAIARALHGRARVARTLRAGLARLHKLDFALRRQELNGQPGALFLDRDGRVMGVMILDVAEGQIQSVSSVVNPDKLRHLGRVADLRGLLRNSAATRPAGRRVAFRVGSASSRYIPAHSERSRDVVHAHRPSSESGHRRGVPGGVGA

Samples

Sample ID Description Type Environment
1 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
81 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
82 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
83 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
87 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
88 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
89 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
90 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
91 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
94 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
95 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
96 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
97 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
98 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
99 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
100 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
101 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
102 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
103 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
104 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
105 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
106 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
107 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
108 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
109 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
110 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
111 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
112 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
113 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
114 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
115 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
116 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
117 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
118 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
119 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
120 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
121 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
122 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
123 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
124 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
125 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
126 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
127 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
128 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
129 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
130 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
131 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
132 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
133 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
134 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
135 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
144 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
145 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
146 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
147 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
148 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
149 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
150 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
151 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
152 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
153 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
154 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
155 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
156 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
157 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
158 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
159 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
160 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
161 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
162 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
163 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
164 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
165 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
166 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
167 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
168 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
169 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
170 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
171 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
172 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.61
Metatranscriptomes 0
Isolates 3.39

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.85
Nodule 2.54
Rhizoplane 3.81
Rhizosphere 91.1
Stem 0
Stem Tuber 0
Unclassified 0.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496113_0222651 3300048916 Bacteria 1504
2 JGI25407J50210_10003016 3300003373 Bacteria 4023
3 JGI25407J50210_10006544 3300003373 Bacteria 2905
4 JGI25407J50210_10022602 3300003373 Bacteria 1634
5 JGI25407J50210_10033258 3300003373 Bacteria 1332
6 JGI25407J50210_10043747 3300003373 Bacteria 1144
7 Ga0070658_10031670 3300005327 Bacteria 4248
8 Ga0070658_10267903 3300005327 Bacteria 1452
9 Ga0070683_100033847 3300005329 Bacteria 4663
10 Ga0070683_100096566 3300005329 Bacteria 2780
11 Ga0070683_100353393 3300005329 Bacteria 1400
12 Ga0070689_100269982 3300005340 Bacteria 1408
13 Ga0070692_10043594 3300005345 Bacteria 2308
14 Ga0070668_100024199 3300005347 Bacteria 4599
15 Ga0070669_100003093 3300005353 Bacteria 11981
16 Ga0070714_100018397 3300005435 Bacteria 5675
17 Ga0070714_100067651 3300005435 Bacteria 3081
18 Ga0070713_100032224 3300005436 Bacteria 4184
19 Ga0070713_100251207 3300005436 Bacteria 1613
20 Ga0070701_10006304 3300005438 Bacteria 4982
21 Ga0070694_100029041 3300005444 Bacteria 3606
22 Ga0070663_100282164 3300005455 Bacteria 1324
23 Ga0070662_100126346 3300005457 Bacteria 1966
24 Ga0068867_100068615 3300005459 Bacteria 2646
25 Ga0070679_100001067 3300005530 Bacteria 23929
26 Ga0070684_100066777 3300005535 Bacteria 3158
27 Ga0070684_100152441 3300005535 Bacteria 2094
28 Ga0070672_100010321 3300005543 Bacteria 6474
29 Ga0070695_100255635 3300005545 Bacteria 1277
30 Ga0070665_100001102 3300005548 Bacteria 33324
31 Ga0070665_100032402 3300005548 Bacteria 5259
32 Ga0070704_100512644 3300005549 Bacteria 1043
33 Ga0070664_100013524 3300005564 Bacteria 6650
34 Ga0068857_100012023 3300005577 Bacteria 7527
35 Ga0068857_100036435 3300005577 Bacteria 4358
36 Ga0068852_100182825 3300005616 Unclassified 1972
37 Ga0068859_100134540 3300005617 Bacteria 2544
38 Ga0068861_100023008 3300005719 Bacteria 4492
39 Ga0068870_10004686 3300005840 Bacteria 5908
40 Ga0068862_100000598 3300005844 Bacteria 37556
41 Ga0081538_10000258 3300005981 Bacteria 60142
42 Ga0081538_10001427 3300005981 Bacteria 24558
43 Ga0081538_10001525 3300005981 Bacteria 23751
44 Ga0081538_10001600 3300005981 Bacteria 23244
45 Ga0081538_10001740 3300005981 Bacteria 22119
46 Ga0081538_10002392 3300005981 Bacteria 18416
47 Ga0081538_10004071 3300005981 Bacteria 13603
48 Ga0081538_10004542 3300005981 Bacteria 12780
49 Ga0081538_10011891 3300005981 Bacteria 7025
50 Ga0081538_10018841 3300005981 Bacteria 5162
51 Ga0081538_10024139 3300005981 Bacteria 4340
52 Ga0081538_10065810 3300005981 Bacteria 2038
53 Ga0081539_10022710 3300005985 Bacteria 4137
54 Ga0070717_10003963 3300006028 Bacteria 10657
55 Ga0070717_10051885 3300006028 Bacteria 3377
56 Ga0070717_10191206 3300006028 Bacteria 1788
57 Ga0097621_100009916 3300006237 Bacteria 6939
58 Ga0068871_100031790 3300006358 Bacteria 4164
59 Ga0075428_100214424 3300006844 Bacteria 2080
60 Ga0075431_100077609 3300006847 Bacteria 3428
61 Ga0075431_100106037 3300006847 Bacteria 2899
62 Ga0075433_10055183 3300006852 Bacteria 3468
63 Ga0075434_100109878 3300006871 Bacteria 2767
64 Ga0075436_100042874 3300006914 Bacteria 3120
65 Ga0097620_100134537 3300006931 Bacteria 2544
66 Ga0075435_100177812 3300007076 Bacteria 1797
67 Ga0105240_10007488 3300009093 Bacteria 15837
68 Ga0111539_10080007 3300009094 Bacteria 3844
69 Ga0111539_10137980 3300009094 Bacteria 2856
70 Ga0111539_10155261 3300009094 Bacteria 2678
71 Ga0105245_10009628 3300009098 Bacteria 8428
72 Ga0105245_10023030 3300009098 Bacteria 5465
73 Ga0105245_10593455 3300009098 Bacteria 1133
74 Ga0114129_10648798 3300009147 Bacteria 1363
75 Ga0105241_10003597 3300009174 Bacteria 11531
76 Ga0105241_10040261 3300009174 Bacteria 3527
77 Ga0105242_10135527 3300009176 Bacteria 2130
78 Ga0105237_10018596 3300009545 Bacteria 7189
79 Ga0105237_10072232 3300009545 Unclassified 3444
80 Ga0105238_10002157 3300009551 Bacteria 19892
81 Ga0105238_10075718 3300009551 Bacteria 3357
82 Ga0105249_10000436 3300009553 Bacteria 39538
83 Ga0105239_10002206 3300010375 Bacteria 25054
84 Ga0105239_10737306 3300010375 Bacteria 1127
85 Ga0157374_10008170 3300013296 Bacteria 8943
86 Ga0157378_10039507 3300013297 Bacteria 4185
87 Ga0157378_10113596 3300013297 Bacteria 2487
88 Ga0163162_10046363 3300013306 Bacteria 4356
89 Ga0157372_10261660 3300013307 Bacteria 2009
90 Ga0157375_10008629 3300013308 Bacteria 8925
91 Ga0157375_10036165 3300013308 Bacteria 4721
92 Ga0157380_10227649 3300014326 Bacteria 1672
93 Ga0157377_10221937 3300014745 Bacteria 1210
94 Ga0207645_10188459 3300025907 Bacteria 1355
95 Ga0207695_10000086 3300025913 Bacteria 278055
96 Ga0207649_10237391 3300025920 Bacteria 1307
97 Ga0207652_10006728 3300025921 Bacteria 9264
98 Ga0207694_10001449 3300025924 Bacteria 20326
99 Ga0207659_10191528 3300025926 Bacteria 1628
100 Ga0207687_10023726 3300025927 Bacteria 4092
101 Ga0207687_10256142 3300025927 Bacteria 1393
102 Ga0207664_10015451 3300025929 Bacteria 5543
103 Ga0207664_10088598 3300025929 Bacteria 2533
104 Ga0207691_10023987 3300025940 Bacteria 5739
105 Ga0207711_10003056 3300025941 Bacteria 14626
106 Ga0207661_10070148 3300025944 Bacteria 2860
107 Ga0207712_10007471 3300025961 Bacteria 6900
108 Ga0207668_10039731 3300025972 Bacteria 3170
109 Ga0207668_10429110 3300025972 Bacteria 1123
110 Ga0207703_10303202 3300026035 Bacteria 1457
111 Ga0207639_10064090 3300026041 Bacteria 2848
112 Ga0207639_10344597 3300026041 Bacteria 1329
113 Ga0207678_10050640 3300026067 Bacteria 3588
114 Ga0207708_10079501 3300026075 Bacteria 2519
115 Ga0207648_10126322 3300026089 Bacteria 2250
116 Ga0207674_10014003 3300026116 Bacteria 8866
117 Ga0207674_10209947 3300026116 Bacteria 1896
118 Ga0207675_100036986 3300026118 Bacteria 4554
119 Ga0268266_10073040 3300028379 Bacteria 2976
120 Ga0268265_10001080 3300028380 Bacteria 24306
121 Ga0307514_10011812 3300031649 Bacteria 7265
122 Ga0265314_10000036 3300031711 Bacteria 234928
123 Ga0307516_10046643 3300031730 Bacteria 4274
124 Ga0307410_10166965 3300031852 Bacteria 1655
125 Ga0307409_100047452 3300031995 Bacteria 3260
126 Ga0307409_100165858 3300031995 Bacteria 1938
127 Ga0307416_100128892 3300032002 Bacteria 2272
128 Ga0307415_100000160 3300032126 Bacteria 29647
129 Ga0307415_100003208 3300032126 Bacteria 8299
130 Ga0315911_1000008 3300033442 Bacteria 381285
131 Ga0373929_0001754 3300035085 Bacteria 4078
132 Ga0373932_0008677 3300035112 Bacteria 2431
133 Ga0373931_0000001 3300035691 Bacteria 634029
134 Ga0373937_0022311 3300036401 Bacteria 5692
135 Ga0395900_0318817 3300037418 Bacteria 1535
136 Ga0395898_0194180 3300037466 Bacteria 1940
137 Ga0395901_0275764 3300038443 Bacteria 1748
138 Ga0466963_0025754 3300044694 Bacteria 3755
139 Ga0466971_0040532 3300044719 Bacteria 2092
140 Ga0466957_0098456 3300044842 Bacteria 1840
141 Ga0466960_0079629 3300044901 Bacteria 1648
142 Ga0466959_0023931 3300045049 Bacteria 4521
143 Ga0466958_0004930 3300045836 Bacteria 7115
144 Ga0466958_0157276 3300045836 Bacteria 1435
145 Ga0466967_0068004 3300045976 Bacteria 3179
146 Ga0466967_0238174 3300045976 Bacteria 1735
147 Ga0495617_065971 3300046452 Bacteria 1193
148 Ga0495605_0005403 3300046474 Bacteria 7445
149 Ga0495584_0026935 3300046491 Bacteria 2913
150 Ga0495585_0033334 3300046492 Bacteria 2915
151 Ga0495607_0055771 3300046501 Bacteria 2271
152 Ga0495583_0012361 3300046506 Bacteria 4838
153 Ga0495606_0031218 3300046507 Bacteria 3708
154 Ga0495616_0017162 3300046513 Bacteria 3994
155 Ga0495620_0001948 3300046515 Bacteria 12086
156 Ga0495631_0040503 3300046518 Bacteria 2064
157 Ga0495643_0000592 3300046522 Bacteria 44046
158 Ga0495597_0003532 3300046542 Bacteria 9040
159 Ga0495611_0001265 3300046648 Bacteria 13019
160 Ga0495611_0012558 3300046648 Bacteria 3601
161 Ga0495625_0009676 3300046660 Bacteria 8030
162 Ga0495657_0232375 3300046675 Bacteria 1115
163 Ga0495669_0103225 3300046684 Bacteria 1326
164 Ga0495671_0101809 3300046692 Bacteria 1404
165 Ga0495649_0005800 3300046694 Bacteria 7779
166 Ga0495589_0007856 3300046794 Bacteria 5583
167 Ga0495660_0025779 3300046810 Bacteria 3336
168 Ga0495672_0078029 3300047320 Bacteria 1854
169 Ga0495683_0005409 3300047323 Bacteria 7088
170 Ga0495687_030217 3300047443 Bacteria 2496
171 Ga0495675_0262646 3300047444 Bacteria 1034
172 Ga0495685_001479 3300047447 Bacteria 7202
173 Ga0495686_0016632 3300047472 Bacteria 4982
174 Ga0495602_0281452 3300048088 Bacteria 1225
175 Ga0496102_0000713 3300048905 Bacteria 32911
176 Ga0496103_0016507 3300048906 Bacteria 4406
177 Ga0496104_0470162 3300048907 Bacteria 1169
178 Ga0496108_0370109 3300048911 Bacteria 1251
179 Ga0496110_0565179 3300048913 Bacteria 1033
180 Ga0496112_0044808 3300048915 Bacteria 4335
181 Ga0496113_0052813 3300048916 Bacteria 3037
182 Ga0501031_0056401 3300049568 Bacteria 2559
183 Ga0501036_0022301 3300049572 Bacteria 5326
184 Ga0501039_0016537 3300049575 Bacteria 5650
185 Ga0501039_0022379 3300049575 Bacteria 4852
186 Ga0501039_0043901 3300049575 Bacteria 3453
187 Ga0501041_0007821 3300049577 Bacteria 6282
188 Ga0501041_0011343 3300049577 Bacteria 5266
189 Ga0501042_0008087 3300049578 Bacteria 6922
190 Ga0501042_0068554 3300049578 Bacteria 2537
191 Ga0501042_0228894 3300049578 Bacteria 1341
192 Ga0501046_0015978 3300049580 Bacteria 6296
193 Ga0501047_0027771 3300049581 Bacteria 5453
194 Ga0501048_0040531 3300049582 Bacteria 3337
195 Ga0501048_0070574 3300049582 Bacteria 2467
196 Ga0501048_0105695 3300049582 Bacteria 1987
197 Ga0501068_0045878 3300049584 Bacteria 2634
198 Ga0501069_0057408 3300049585 Bacteria 2170
199 Ga0501071_0037919 3300049587 Bacteria 3443
200 Ga0501071_0434837 3300049587 Bacteria 1004
201 Ga0501072_0074164 3300049588 Bacteria 2691
202 Ga0501072_0283210 3300049588 Bacteria 1318
203 Ga0501074_0131308 3300049590 Bacteria 1792
204 Ga0501075_0028627 3300049591 Bacteria 4113
205 Ga0501075_0044850 3300049591 Bacteria 3317
206 Ga0501075_0064381 3300049591 Bacteria 2766
207 Ga0501076_0003664 3300049592 Bacteria 10799
208 Ga0501079_0129258 3300049741 Bacteria 1965
209 Ga0501079_0134407 3300049741 Bacteria 1925
210 Ga0501081_0259125 3300049743 Bacteria 1271
211 Ga0501081_0289319 3300049743 Bacteria 1201
212 Ga0501045_0001304 3300049824 Bacteria 16553
213 Ga0501045_0019060 3300049824 Bacteria 4886
214 nmdc:mga03n38_20412_c1 3300050490 Bacteria 2650
215 nmdc:mga05p37_124611_c1 3300050507 Bacteria 3164
216 nmdc:mga06r32_32957_c1 3300050510 Bacteria 4878
217 nmdc:mga08y16_271672_c1 3300050511 Bacteria 1750
218 nmdc:mga08y16_70219_c1 3300050511 Bacteria 3651
219 nmdc:mga0n895_21172_c1 3300050512 Bacteria 6077
220 nmdc:mga0rr50_47931_c1 3300050513 Bacteria 3155
221 nmdc:mga0a205_87549_c1 3300050515 Bacteria 3009
222 Ga0500595_009261 3300053119 Bacteria 3981
223 Ga0590075_024370 3300059424 Bacteria 1518
224 Ga0501082_0408297 3300060353 Bacteria 1185
225 Ga0466962_0011112 3300061719 Bacteria 4333
226 Ga0530510_0008419 3300061734 Bacteria 7189
227 Ga0530510_0065123 3300061734 Bacteria 2640
228 Ga0530510_0236467 3300061734 Bacteria 1359
229 2517889087 2517572143 Bacteria 9484767
230 2671124078 2667528175 Bacteria 7532676
231 2793072670 2791355197 Bacteria 8420563
232 2885378133 2885374607 Bacteria 8927485
233 2903758752 2903748898 Bacteria 9972761
234 2908747693 2908739725 Bacteria 8628932
235 2990091810 2990088156 Bacteria 6657676
236 3005475315 3005474847 Bacteria 9259049
237 Ga0496113_0222651
238 JGI25407J50210_10003016
239 JGI25407J50210_10006544
240 JGI25407J50210_10022602
241 JGI25407J50210_10033258
242 JGI25407J50210_10043747
243 Ga0070658_10031670
244 Ga0070658_10267903
245 Ga0070683_100033847
246 Ga0070683_100096566
247 Ga0070683_100353393
248 Ga0070689_100269982
249 Ga0070692_10043594
250 Ga0070668_100024199
251 Ga0070669_100003093
252 Ga0070714_100018397
253 Ga0070714_100067651
254 Ga0070713_100032224
255 Ga0070713_100251207
256 Ga0070701_10006304
257 Ga0070694_100029041
258 Ga0070663_100282164
259 Ga0070662_100126346
260 Ga0068867_100068615
261 Ga0070679_100001067
262 Ga0070684_100066777
263 Ga0070684_100152441
264 Ga0070672_100010321
265 Ga0070695_100255635
266 Ga0070665_100001102
267 Ga0070665_100032402
268 Ga0070704_100512644
269 Ga0070664_100013524
270 Ga0068857_100012023
271 Ga0068857_100036435
272 Ga0068852_100182825
273 Ga0068859_100134540
274 Ga0068861_100023008
275 Ga0068870_10004686
276 Ga0068862_100000598
277 Ga0081538_10000258
278 Ga0081538_10001427
279 Ga0081538_10001525
280 Ga0081538_10001600
281 Ga0081538_10001740
282 Ga0081538_10002392
283 Ga0081538_10004071
284 Ga0081538_10004542
285 Ga0081538_10011891
286 Ga0081538_10018841
287 Ga0081538_10024139
288 Ga0081538_10065810
289 Ga0081539_10022710
290 Ga0070717_10003963
291 Ga0070717_10051885
292 Ga0070717_10191206
293 Ga0097621_100009916
294 Ga0068871_100031790
295 Ga0075428_100214424
296 Ga0075431_100077609
297 Ga0075431_100106037
298 Ga0075433_10055183
299 Ga0075434_100109878
300 Ga0075436_100042874
301 Ga0097620_100134537
302 Ga0075435_100177812
303 Ga0105240_10007488
304 Ga0111539_10080007
305 Ga0111539_10137980
306 Ga0111539_10155261
307 Ga0105245_10009628
308 Ga0105245_10023030
309 Ga0105245_10593455
310 Ga0114129_10648798
311 Ga0105241_10003597
312 Ga0105241_10040261
313 Ga0105242_10135527
314 Ga0105237_10018596
315 Ga0105237_10072232
316 Ga0105238_10002157
317 Ga0105238_10075718
318 Ga0105249_10000436
319 Ga0105239_10002206
320 Ga0105239_10737306
321 Ga0157374_10008170
322 Ga0157378_10039507
323 Ga0157378_10113596
324 Ga0163162_10046363
325 Ga0157372_10261660
326 Ga0157375_10008629
327 Ga0157375_10036165
328 Ga0157380_10227649
329 Ga0157377_10221937
330 Ga0207645_10188459
331 Ga0207695_10000086
332 Ga0207649_10237391
333 Ga0207652_10006728
334 Ga0207694_10001449
335 Ga0207659_10191528
336 Ga0207687_10023726
337 Ga0207687_10256142
338 Ga0207664_10015451
339 Ga0207664_10088598
340 Ga0207691_10023987
341 Ga0207711_10003056
342 Ga0207661_10070148
343 Ga0207712_10007471
344 Ga0207668_10039731
345 Ga0207668_10429110
346 Ga0207703_10303202
347 Ga0207639_10064090
348 Ga0207639_10344597
349 Ga0207678_10050640
350 Ga0207708_10079501
351 Ga0207648_10126322
352 Ga0207674_10014003
353 Ga0207674_10209947
354 Ga0207675_100036986
355 Ga0268266_10073040
356 Ga0268265_10001080
357 Ga0307514_10011812
358 Ga0265314_10000036
359 Ga0307516_10046643
360 Ga0307410_10166965
361 Ga0307409_100047452
362 Ga0307409_100165858
363 Ga0307416_100128892
364 Ga0307415_100000160
365 Ga0307415_100003208
366 Ga0315911_1000008
367 Ga0373929_0001754
368 Ga0373932_0008677
369 Ga0373931_0000001
370 Ga0373937_0022311
371 Ga0395900_0318817
372 Ga0395898_0194180
373 Ga0395901_0275764
374 Ga0466963_0025754
375 Ga0466971_0040532
376 Ga0466957_0098456
377 Ga0466960_0079629
378 Ga0466959_0023931
379 Ga0466958_0004930
380 Ga0466958_0157276
381 Ga0466967_0068004
382 Ga0466967_0238174
383 Ga0495617_065971
384 Ga0495605_0005403
385 Ga0495584_0026935
386 Ga0495585_0033334
387 Ga0495607_0055771
388 Ga0495583_0012361
389 Ga0495606_0031218
390 Ga0495616_0017162
391 Ga0495620_0001948
392 Ga0495631_0040503
393 Ga0495643_0000592
394 Ga0495597_0003532
395 Ga0495611_0001265
396 Ga0495611_0012558
397 Ga0495625_0009676
398 Ga0495657_0232375
399 Ga0495669_0103225
400 Ga0495671_0101809
401 Ga0495649_0005800
402 Ga0495589_0007856
403 Ga0495660_0025779
404 Ga0495672_0078029
405 Ga0495683_0005409
406 Ga0495687_030217
407 Ga0495675_0262646
408 Ga0495685_001479
409 Ga0495686_0016632
410 Ga0495602_0281452
411 Ga0496102_0000713
412 Ga0496103_0016507
413 Ga0496104_0470162
414 Ga0496108_0370109
415 Ga0496110_0565179
416 Ga0496112_0044808
417 Ga0496113_0052813
418 Ga0501031_0056401
419 Ga0501036_0022301
420 Ga0501039_0016537
421 Ga0501039_0022379
422 Ga0501039_0043901
423 Ga0501041_0007821
424 Ga0501041_0011343
425 Ga0501042_0008087
426 Ga0501042_0068554
427 Ga0501042_0228894
428 Ga0501046_0015978
429 Ga0501047_0027771
430 Ga0501048_0040531
431 Ga0501048_0070574
432 Ga0501048_0105695
433 Ga0501068_0045878
434 Ga0501069_0057408
435 Ga0501071_0037919
436 Ga0501071_0434837
437 Ga0501072_0074164
438 Ga0501072_0283210
439 Ga0501074_0131308
440 Ga0501075_0028627
441 Ga0501075_0044850
442 Ga0501075_0064381
443 Ga0501076_0003664
444 Ga0501079_0129258
445 Ga0501079_0134407
446 Ga0501081_0259125
447 Ga0501081_0289319
448 Ga0501045_0001304
449 Ga0501045_0019060
450 nmdc:mga03n38_20412_c1
451 nmdc:mga05p37_124611_c1
452 nmdc:mga06r32_32957_c1
453 nmdc:mga08y16_271672_c1
454 nmdc:mga08y16_70219_c1
455 nmdc:mga0n895_21172_c1
456 nmdc:mga0rr50_47931_c1
457 nmdc:mga0a205_87549_c1
458 Ga0500595_009261
459 Ga0590075_024370
460 Ga0501082_0408297
461 Ga0466962_0011112
462 Ga0530510_0008419
463 Ga0530510_0065123
464 Ga0530510_0236467
465 2517889087
466 2671124078
467 2793072670
468 2885378133
469 2903758752
470 2908747693
471 2990091810
472 3005475315

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

101

154

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

4

71

0.91

PF12680

SnoaL_2

SnoaL-like domain

172

272

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9468 109 159
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9412 109 157
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.933 109 159
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9281 109 157
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.9113 105 160
ID Description Score Start End Superfamily
af_L0TCG5_5_78_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9622 4 80 1.10.1740.10
af_L0TCG5_5_78_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9498 4 80 1.10.1740.10
4cxfA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9444 109 159 1.10.10.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9412 109 157 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.933 109 159 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4R5A337-F1-model_v4 RNA polymerase sigma-70 factor 0.9787 13 300 GO:0003677
GO:0006352
GO:0016987
AF-A0A4R5A337-F1-model_v4 RNA polymerase sigma-70 factor 0.9687 13 300 GO:0003677
GO:0006352
GO:0016987
AF-A0A7J9VK66-F1-model_v4 RNA polymerase sigma-70 factor 0.961 6 299 GO:0003677
GO:0006352
GO:0016987
AF-A0A3C1CJN8-F1-model_v4 RNA polymerase sigma-70 factor 0.9609 5 290 GO:0003677
GO:0006352
GO:0016987
AF-A0A4R0H6J0-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.9561 6 290 GO:0003677
GO:0006352
GO:0016987

Map