F349019

General Info

Members Datasets Scaffolds Average Seq Length
236 188 230 277

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10044263|Ga0105240_100442632
Length 296
Sequence MLEQFLTISGPLLPAMEHAPLAAAADADTADLARRIRAQALRMVTRAKASHIGSALSIADIVAVLYGGLLRVDPAAPDHPERDRFLLSKGHACVAIYAALAETGFIPREMLATYGTDLSPLMAHISHKVPGVEFSTGALGHGLPFGTGKALAARRRGQGWRTVVLTSDGEWGEGSNWEAALFAAHHGLDNLVCILDYNKLQSLGSVDETLRLEPLHSKFEAFGWAVREVDGHDHAALREALAAAPWQPGKPSLLIAHTTKGKGVGFMENQVLWHYRNPSPEQLAQALAEIGEPADA

Samples

Sample ID Description Type Environment
1 2513237139 Bradyrhizobium ottawaense USDA 4 Isolate Nodule
2 2643221551 Mesorhizobium sp. Root1471 Isolate Unclassified
3 2643221674 Devosia sp. Root436 Isolate Unclassified
4 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
5 2891562705 Microbispora tritici MT50 Isolate Unclassified
6 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
7 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
8 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
9 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
10 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
11 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
12 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
15 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
16 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
19 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
20 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
23 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
24 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
25 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
26 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
27 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
28 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
41 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
42 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
43 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
44 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
45 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
46 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
47 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
48 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
49 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
50 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
51 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
52 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
53 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
55 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
56 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
57 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
61 3300009978 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG Metagenome Rhizosphere
62 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
63 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
66 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
67 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
68 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
69 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
70 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
71 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
109 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
110 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
111 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
112 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
113 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
114 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
115 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
116 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
117 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
118 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
119 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
120 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
121 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
122 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
123 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
124 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
125 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
126 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
127 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
128 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
129 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
130 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
131 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
132 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
133 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
134 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
135 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
136 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
137 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
138 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
139 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
140 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
141 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
142 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
143 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
144 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
145 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
146 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
147 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
148 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
149 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
150 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
151 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
152 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
153 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
154 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
155 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
156 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
157 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
158 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
159 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
160 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
161 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
162 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
163 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
164 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
167 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
172 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
173 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
174 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
175 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
176 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
177 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
178 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
179 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
180 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
181 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
182 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
183 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
184 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
185 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
186 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
187 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
188 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.03
Metatranscriptomes 0.42
Isolates 2.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.05
Nodule 0.42
Rhizoplane 2.12
Rhizosphere 82.2
Stem 0
Stem Tuber 0
Unclassified 7.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1000437 3300001904 Bacteria 7872
2 JGI24741J21665_1000334 3300001915 Bacteria 14079
3 JGI24740J21852_10000812 3300001979 Bacteria 13750
4 JGI24740J21852_10011948 3300001979 Bacteria 3288
5 JGI24737J22298_10000502 3300001990 Bacteria 13643
6 JGI24735J21928_10003430 3300002067 Bacteria 5401
7 JGI24738J21930_10025165 3300002075 Bacteria 1224
8 rootH1_10111034 3300003316 Bacteria 1656
9 rootL2_10177226 3300003322 Bacteria 2462
10 rootL2_10314106 3300003322 Bacteria 3838
11 rootH1_10005655 3300003323 Bacteria 17798
12 rootH1_10248267 3300003323 Bacteria 1526
13 Ga0055524_1015912 3300003775 Bacteria 2723
14 Ga0055531_10008255 3300003794 Bacteria 5536
15 Ga0065165_1028326 3300005262 Bacteria 1811
16 Ga0070658_10040676 3300005327 Bacteria 3751
17 Ga0070658_10174283 3300005327 Bacteria 1808
18 Ga0070658_10261793 3300005327 Bacteria 1469
19 Ga0070658_10346824 3300005327 Bacteria 1270
20 Ga0070658_10446407 3300005327 Bacteria 1114
21 Ga0070680_100097449 3300005336 Bacteria 2438
22 Ga0070660_100038442 3300005339 Bacteria 3633
23 Ga0070660_100170787 3300005339 Bacteria 1756
24 Ga0070660_100214486 3300005339 Bacteria 1563
25 Ga0070661_100003061 3300005344 Bacteria 11499
26 Ga0070661_100005287 3300005344 Bacteria 8896
27 Ga0070668_100580627 3300005347 Bacteria 978
28 Ga0070669_100000042 3300005353 Bacteria 123396
29 Ga0070671_100000010 3300005355 Bacteria 202799
30 Ga0070659_100007435 3300005366 Bacteria 7959
31 Ga0070714_100052260 3300005435 Bacteria 3485
32 Ga0070714_100084514 3300005435 Bacteria 2770
33 Ga0070713_100459347 3300005436 Bacteria 1197
34 Ga0070663_100038044 3300005455 Bacteria 3353
35 Ga0070681_10119512 3300005458 Bacteria 2571
36 Ga0070679_100129264 3300005530 Bacteria 2507
37 Ga0068853_100236568 3300005539 Bacteria 1672
38 Ga0070672_100390097 3300005543 Bacteria 1192
39 Ga0070693_100083020 3300005547 Bacteria 1914
40 Ga0070664_100054500 3300005564 Bacteria 3392
41 Ga0070664_100081909 3300005564 Bacteria 2782
42 Ga0070664_100346521 3300005564 Bacteria 1350
43 Ga0068857_100005694 3300005577 Bacteria 10653
44 Ga0068856_100008942 3300005614 Bacteria 9742
45 Ga0068852_100046957 3300005616 Bacteria 3682
46 Ga0068852_100278239 3300005616 Bacteria 1612
47 Ga0068859_100000311 3300005617 Bacteria 48667
48 Ga0068864_100022733 3300005618 Bacteria 5258
49 Ga0068861_100029159 3300005719 Bacteria 4034
50 Ga0068851_10001432 3300005834 Bacteria 10437
51 Ga0068863_100422258 3300005841 Bacteria 1306
52 Ga0068858_100007315 3300005842 Bacteria 10692
53 Ga0068860_100491364 3300005843 Bacteria 1224
54 Ga0068862_100002957 3300005844 Bacteria 14841
55 Ga0081455_10001613 3300005937 Bacteria 27561
56 Ga0075363_100006457 3300006048 Bacteria 5326
57 Ga0075364_10138584 3300006051 Bacteria 1635
58 Ga0075362_10000008 3300006177 Bacteria 112391
59 Ga0075369_10030030 3300006186 Bacteria 2287
60 Ga0068871_100552464 3300006358 Bacteria 1043
61 Ga0075430_100038910 3300006846 Bacteria 4027
62 Ga0097620_100000311 3300006931 Bacteria 48667
63 Ga0105251_10025322 3300009011 Bacteria 3037
64 Ga0105240_10016998 3300009093 Bacteria 9827
65 Ga0105240_10044263 3300009093 Bacteria 5658
66 Ga0105240_10064651 3300009093 Bacteria 4545
67 Ga0105247_10007127 3300009101 Bacteria 6866
68 Ga0105241_10008254 3300009174 Bacteria 7671
69 Ga0105248_10062585 3300009177 Bacteria 4178
70 Ga0105248_10111975 3300009177 Bacteria 3079
71 Ga0105237_10005719 3300009545 Bacteria 13977
72 Ga0105238_10008065 3300009551 Bacteria 10532
73 Ga0105148_100131 3300009978 Bacteria 11505
74 Ga0157373_10021100 3300013100 Bacteria 4730
75 Ga0157371_10018486 3300013102 Bacteria 5152
76 Ga0157370_10107340 3300013104 Bacteria 2611
77 Ga0157369_10035346 3300013105 Bacteria 5480
78 Ga0157369_10195229 3300013105 Bacteria 2126
79 Ga0157372_10028142 3300013307 Bacteria 6132
80 Ga0163163_10193080 3300014325 Bacteria 2084
81 Ga0157380_10186878 3300014326 Bacteria 1826
82 Ga0163161_10114035 3300017792 Bacteria 2024
83 Ga0213872_10000256 3300021361 Bacteria 46367
84 Ga0209256_1001350 3300025299 Bacteria 25984
85 Ga0209257_1008660 3300025304 Bacteria 5696
86 Ga0209257_1017127 3300025304 Bacteria 2878
87 Ga0207697_10000004 3300025315 Bacteria 90016
88 Ga0207656_10040370 3300025321 Bacteria 1978
89 Ga0207710_10009816 3300025900 Bacteria 4023
90 Ga0207680_10000110 3300025903 Bacteria 37399
91 Ga0207647_10002739 3300025904 Bacteria 13301
92 Ga0207705_10001992 3300025909 Bacteria 15882
93 Ga0207705_10360137 3300025909 Bacteria 1122
94 Ga0207707_10038185 3300025912 Bacteria 4196
95 Ga0207695_10030886 3300025913 Bacteria 5891
96 Ga0207695_10077437 3300025913 Bacteria 3377
97 Ga0207695_10084741 3300025913 Unclassified 3199
98 Ga0207671_10005299 3300025914 Bacteria 11949
99 Ga0207657_10002110 3300025919 Bacteria 21508
100 Ga0207649_10374187 3300025920 Bacteria 1060
101 Ga0207681_10000002 3300025923 Bacteria 985597
102 Ga0207694_10004211 3300025924 Bacteria 11257
103 Ga0207650_10005718 3300025925 Bacteria 8484
104 Ga0207700_10388082 3300025928 Bacteria 1222
105 Ga0207664_10134441 3300025929 Bacteria 2085
106 Ga0207664_10527082 3300025929 Bacteria 1059
107 Ga0207644_10000002 3300025931 Bacteria 942221
108 Ga0207690_10054140 3300025932 Bacteria 2696
109 Ga0207711_10070000 3300025941 Bacteria 3042
110 Ga0207679_10016420 3300025945 Bacteria 4918
111 Ga0207679_10304903 3300025945 Bacteria 1374
112 Ga0207712_10002950 3300025961 Bacteria 10863
113 Ga0207668_10008599 3300025972 Bacteria 6093
114 Ga0207640_10046797 3300025981 Bacteria 2786
115 Ga0207658_10019657 3300025986 Bacteria 4671
116 Ga0207703_10091886 3300026035 Bacteria 2553
117 Ga0207639_10024095 3300026041 Bacteria 4400
118 Ga0207639_10074724 3300026041 Bacteria 2662
119 Ga0207678_10003215 3300026067 Bacteria 14765
120 Ga0207678_10040574 3300026067 Bacteria 4036
121 Ga0207702_10015291 3300026078 Bacteria 6362
122 Ga0207641_10008470 3300026088 Bacteria 8500
123 Ga0207674_10016424 3300026116 Bacteria 8104
124 Ga0207675_100004081 3300026118 Bacteria 14137
125 Ga0207698_10002818 3300026142 Bacteria 10402
126 Ga0207698_10269296 3300026142 Bacteria 1569
127 Ga0268266_10024131 3300028379 Bacteria 5174
128 Ga0268265_10000260 3300028380 Bacteria 60001
129 Ga0268264_10000010 3300028381 Bacteria 596543
130 Ga0265324_10000259 3300029957 Bacteria 39278
131 Ga0265331_10001541 3300031250 Bacteria 16945
132 Ga0265327_10000012 3300031251 Bacteria 530403
133 Ga0265316_10002963 3300031344 Bacteria 17372
134 Ga0265316_10050863 3300031344 Bacteria 3258
135 Ga0265316_10082315 3300031344 Bacteria 2466
136 Ga0307408_100000307 3300031548 Bacteria 46821
137 Ga0265314_10000370 3300031711 Bacteria 61431
138 Ga0265342_10059448 3300031712 Bacteria 2258
139 Ga0316576_10198104 3300031727 Bacteria 1513
140 Ga0307405_10000067 3300031731 Bacteria 48137
141 Ga0307410_10091519 3300031852 Bacteria 2160
142 Ga0307406_10010980 3300031901 Bacteria 5127
143 Ga0307406_10251866 3300031901 Bacteria 1331
144 Ga0307412_10106485 3300031911 Bacteria 1993
145 Ga0373928_0000136 3300035084 Bacteria 13895
146 Ga0373929_0000121 3300035085 Bacteria 12972
147 Ga0373944_0000272 3300035089 Bacteria 11361
148 Ga0373949_0002919 3300035090 Bacteria 4213
149 Ga0373951_0001975 3300035091 Bacteria 5256
150 Ga0373932_0000001 3300035112 Bacteria 1459067
151 Ga0373962_0000013 3300035242 Bacteria 49373
152 Ga0373931_0000002 3300035691 Bacteria 599830
153 Ga0373927_0002052 3300035695 Bacteria 14854
154 Ga0373947_0010859 3300035725 Bacteria 5225
155 Ga0373925_0000352 3300037068 Bacteria 47960
156 Ga0395900_0358480 3300037418 Bacteria 1430
157 Ga0395898_0419388 3300037466 Bacteria 1275
158 Ga0395905_0004026 3300037471 Bacteria 15424
159 Ga0395905_0019320 3300037471 Bacteria 6460
160 Ga0395901_0050479 3300038443 Bacteria 4322
161 Ga0395901_0468923 3300038443 Bacteria 1285
162 Ga0436365_0147150 3300039437 Bacteria 1496
163 Ga0436361_0677882 3300039447 Bacteria 228834
164 Ga0439441_040265 3300042001 Bacteria 934
165 Ga0466972_0015165 3300044658 Bacteria 3852
166 Ga0453683_0000308 3300044673 Bacteria 61510
167 Ga0453683_0014524 3300044673 Bacteria 5110
168 Ga0466965_0008868 3300044683 Bacteria 4662
169 Ga0466965_0113683 3300044683 Bacteria 1393
170 Ga0466961_0092824 3300044693 Bacteria 1905
171 Ga0466963_0149624 3300044694 Bacteria 1621
172 Ga0451576_0004753 3300045051 Bacteria 17438
173 Ga0451576_0603279 3300045051 Bacteria 1154
174 Ga0466967_0389406 3300045976 Bacteria 1354
175 Ga0466967_0505357 3300045976 Bacteria 1187
176 Ga0495617_016393 3300046452 Bacteria 2505
177 Ga0495617_037282 3300046452 Bacteria 1629
178 Ga0495650_0000083 3300046471 Bacteria 237725
179 Ga0495650_0010705 3300046471 Bacteria 5098
180 Ga0495605_0001145 3300046474 Bacteria 17597
181 Ga0495606_0001520 3300046507 Bacteria 30729
182 Ga0495631_0123320 3300046518 Bacteria 1114
183 Ga0495643_0017980 3300046522 Bacteria 4118
184 Ga0495648_0020823 3300046524 Bacteria 4561
185 Ga0495625_0000929 3300046660 Bacteria 39380
186 Ga0495625_0090605 3300046660 Bacteria 2115
187 Ga0495672_0147148 3300047320 Bacteria 1225
188 Ga0495626_0001974 3300048091 Bacteria 15184
189 Ga0495626_0002069 3300048091 Bacteria 14642
190 Ga0496106_0247055 3300048909 Bacteria 1426
191 Ga0496107_0017382 3300048910 Bacteria 5059
192 Ga0496110_0020261 3300048913 Bacteria 5614
193 Ga0496111_0085722 3300048914 Bacteria 2303
194 Ga0496112_0170677 3300048915 Bacteria 2140
195 Ga0496121_0000584 3300048924 Bacteria 68507
196 Ga0496121_0002140 3300048924 Bacteria 31024
197 Ga0496121_0024516 3300048924 Bacteria 5765
198 Ga0496124_0191023 3300048927 Bacteria 1567
199 Ga0496125_0006908 3300048928 Bacteria 12148
200 Ga0496126_0006825 3300048929 Bacteria 12664
201 Ga0496126_0013585 3300048929 Bacteria 8269
202 Ga0501032_0037444 3300049569 Bacteria 3308
203 Ga0501034_0016077 3300049571 Bacteria 7678
204 Ga0501034_0259466 3300049571 Bacteria 1681
205 Ga0501036_0263285 3300049572 Bacteria 1444
206 Ga0501037_0063576 3300049573 Unclassified 2690
207 Ga0501037_0072526 3300049573 Bacteria 2504
208 Ga0501038_0165669 3300049574 Unclassified 1793
209 Ga0501038_0199376 3300049574 Bacteria 1607
210 Ga0501043_0038909 3300049579 Bacteria 3739
211 Ga0501047_0005248 3300049581 Bacteria 12169
212 Ga0501047_0017044 3300049581 Bacteria 6947
213 Ga0501070_0009323 3300049586 Bacteria 8303
214 Ga0501223_000252 3300049663 Bacteria 13764
215 Ga0501235_034474 3300049669 Bacteria 1148
216 Ga0501225_0000393 3300049705 Bacteria 13789
217 Ga0501080_0005557 3300049742 Bacteria 11261
218 Ga0501044_0002074 3300049823 Bacteria 23096
219 Ga0501044_0006432 3300049823 Bacteria 12978
220 nmdc:mga03n38_128_c1 3300050490 Bacteria 16481
221 nmdc:mga00v17_35055_c1 3300050491 Bacteria 2984
222 nmdc:mga0qj67_8667_c1 3300050509 Bacteria 7549
223 nmdc:mga0sz30_2523_c1 3300050516 Bacteria 4708
224 Ga0500643_025417 3300053087 Bacteria 1868
225 Ga0500593_000185 3300053117 Bacteria 25193
226 Ga0500594_0002372 3300053118 Bacteria 4094
227 Ga0500608_012872 3300053122 Bacteria 3686
228 Ga0500627_0014684 3300053158 Bacteria 3007
229 Ga0500636_0022292 3300053177 Bacteria 3749
230 Ga0587088_003240 3300059508 Bacteria 1952

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031727 Ga0316576_10198104 Ga0316576_101981042 238
2 3300049574 Ga0501038_0165669 Ga0501038_0165669_353_1114 242
3 3300025929 Ga0207664_10527082 Ga0207664_105270821 251
4 3300029957 Ga0265324_10000259 Ga0265324_1000025913 252
5 3300031344 Ga0265316_10050863 Ga0265316_100508633 252
6 3300042001 Ga0439441_040265 Ga0439441_040265_135_893 252
7 3300049571 Ga0501034_0016077 Ga0501034_0016077_6701_7462 252
8 3300005262 Ga0065165_1028326 Ga0065165_10283261 253
9 3300025304 Ga0209257_1017127 Ga0209257_10171272 253
10 3300005436 Ga0070713_100459347 Ga0070713_1004593472 254
11 3300005564 Ga0070664_100081909 Ga0070664_1000819093 254
12 3300005616 Ga0068852_100046957 Ga0068852_1000469574 254
13 3300025909 Ga0207705_10001992 Ga0207705_1000199211 254
14 3300025912 Ga0207707_10038185 Ga0207707_100381855 254
15 3300025919 Ga0207657_10002110 Ga0207657_1000211010 254
16 3300025928 Ga0207700_10388082 Ga0207700_103880822 254
17 3300025932 Ga0207690_10054140 Ga0207690_100541403 254
18 3300026041 Ga0207639_10024095 Ga0207639_100240953 254
19 3300026067 Ga0207678_10040574 Ga0207678_100405743 254
20 3300026142 Ga0207698_10269296 Ga0207698_102692962 254
21 3300045976 Ga0466967_0505357 Ga0466967_0505357_131_895 254
22 3300048915 Ga0496112_0170677 Ga0496112_0170677_1336_2100 254
23 3300049569 Ga0501032_0037444 Ga0501032_0037444_1780_2562 254
24 3300049572 Ga0501036_0263285 Ga0501036_0263285_613_1395 254
25 3300049573 Ga0501037_0072526 Ga0501037_0072526_94_876 254
26 3300049574 Ga0501038_0199376 Ga0501038_0199376_478_1260 254
27 3300049579 Ga0501043_0038909 Ga0501043_0038909_1145_1927 254
28 3300049581 Ga0501047_0005248 Ga0501047_0005248_7177_7959 254
29 3300049742 Ga0501080_0005557 Ga0501080_0005557_7989_8771 254
30 3300049823 Ga0501044_0002074 Ga0501044_0002074_3906_4688 254
31 3300003322 rootL2_10314106 rootL2_103141063 255
32 3300005327 Ga0070658_10040676 Ga0070658_100406763 255
33 3300046518 Ga0495631_0123320 Ga0495631_0123320_24_791 255
34 3300021361 Ga0213872_10000256 Ga0213872_1000025631 258
35 3300039447 Ga0436361_0677882 Ga0436361_0677882_15549_16325 258
36 3300049571 Ga0501034_0259466 Ga0501034_0259466_656_1453 259
37 3300005564 Ga0070664_100346521 Ga0070664_1003465212 263
38 3300025945 Ga0207679_10304903 Ga0207679_103049032 263
39 3300005937 Ga0081455_10001613 Ga0081455_1000161317 264
40 3300050509 nmdc:mga0qj67_8667_c1 nmdc:mga0qj67_8667_c1_3563_4396 264
41 3300053087 Ga0500643_025417 Ga0500643_025417_473_1270 264
42 3300003322 rootL2_10177226 rootL2_101772263 266
43 3300014326 Ga0157380_10186878 Ga0157380_101868782 266
44 3300031852 Ga0307410_10091519 Ga0307410_100915193 266
45 3300031901 Ga0307406_10251866 Ga0307406_102518662 266
46 3300053117 Ga0500593_000185 Ga0500593_000185_6344_7147 267
47 3300003316 rootH1_10111034 rootH1_101110342 268
48 3300031344 Ga0265316_10082315 Ga0265316_100823152 268
49 3300046507 Ga0495606_0001520 Ga0495606_0001520_17737_18543 268
50 iso_pu_bacteria 8055225921 8055226159 268
51 3300006846 Ga0075430_100038910 Ga0075430_1000389105 269
52 3300044658 Ga0466972_0015165 Ga0466972_0015165_2813_3622 269
53 3300044683 Ga0466965_0113683 Ga0466965_0113683_484_1293 269
54 3300003323 rootH1_10248267 rootH1_102482672 270
55 3300009093 Ga0105240_10064651 Ga0105240_100646514 270
56 3300025913 Ga0207695_10077437 Ga0207695_100774372 270
57 3300031250 Ga0265331_10001541 Ga0265331_100015413 270
58 3300031251 Ga0265327_10000012 Ga0265327_1000001217 270
59 3300035084 Ga0373928_0000136 Ga0373928_0000136_11385_12197 270
60 3300035085 Ga0373929_0000121 Ga0373929_0000121_3573_4385 270
61 3300035089 Ga0373944_0000272 Ga0373944_0000272_3439_4251 270
62 3300035090 Ga0373949_0002919 Ga0373949_0002919_247_1059 270
63 3300035091 Ga0373951_0001975 Ga0373951_0001975_1316_2128 270
64 3300035112 Ga0373932_0000001 Ga0373932_0000001_1230097_1230909 270
65 3300035242 Ga0373962_0000013 Ga0373962_0000013_41079_41891 270
66 3300035691 Ga0373931_0000002 Ga0373931_0000002_264489_265301 270
67 3300035695 Ga0373927_0002052 Ga0373927_0002052_8607_9419 270
68 3300035725 Ga0373947_0010859 Ga0373947_0010859_3312_4124 270
69 3300037068 Ga0373925_0000352 Ga0373925_0000352_44724_45536 270
70 3300037471 Ga0395905_0004026 Ga0395905_0004026_6396_7214 270
71 iso_pu_bacteria 2856741275 2856748552 270
72 iso_pu_bacteria 2891562705 2891568353 270
73 3300045051 Ga0451576_0603279 Ga0451576_0603279_286_1101 271
74 3300046471 Ga0495650_0010705 Ga0495650_0010705_1840_2655 271
75 3300046660 Ga0495625_0090605 Ga0495625_0090605_822_1664 271
76 3300059508 Ga0587088_003240 Ga0587088_003240_372_1208 271
77 3300003323 rootH1_10005655 rootH1_1000565515 272
78 3300003775 Ga0055524_1015912 Ga0055524_10159123 272
79 3300003794 Ga0055531_10008255 Ga0055531_100082552 272
80 3300005435 Ga0070714_100084514 Ga0070714_1000845142 272
81 3300006048 Ga0075363_100006457 Ga0075363_1000064574 272
82 3300006051 Ga0075364_10138584 Ga0075364_101385842 272
83 3300006177 Ga0075362_10000008 Ga0075362_100000082 272
84 3300006186 Ga0075369_10030030 Ga0075369_100300302 272
85 3300025299 Ga0209256_1001350 Ga0209256_100135022 272
86 3300025304 Ga0209257_1008660 Ga0209257_10086605 272
87 3300037418 Ga0395900_0358480 Ga0395900_0358480_296_1114 272
88 3300038443 Ga0395901_0050479 Ga0395901_0050479_3238_4056 272
89 3300044673 Ga0453683_0000308 Ga0453683_0000308_56781_57605 272
90 3300044673 Ga0453683_0014524 Ga0453683_0014524_1000_1824 272
91 3300044683 Ga0466965_0008868 Ga0466965_0008868_3484_4302 272
92 3300044693 Ga0466961_0092824 Ga0466961_0092824_723_1541 272
93 3300045051 Ga0451576_0004753 Ga0451576_0004753_4793_5617 272
94 3300046474 Ga0495605_0001145 Ga0495605_0001145_14627_15445 272
95 3300046522 Ga0495643_0017980 Ga0495643_0017980_20_838 272
96 3300046660 Ga0495625_0000929 Ga0495625_0000929_17114_17932 272
97 3300048091 Ga0495626_0002069 Ga0495626_0002069_13263_14081 272
98 iso_pu_bacteria 2643221674 2644412991 272
99 3300048929 Ga0496126_0006825 Ga0496126_0006825_6390_7211 273
100 3300005327 Ga0070658_10261793 Ga0070658_102617932 274
101 3300005327 Ga0070658_10446407 Ga0070658_104464072 274
102 3300025909 Ga0207705_10360137 Ga0207705_103601372 274
103 3300031711 Ga0265314_10000370 Ga0265314_1000037034 274
104 3300039437 Ga0436365_0147150 Ga0436365_0147150_192_1025 274
105 3300046471 Ga0495650_0000083 Ga0495650_0000083_11853_12692 274
106 iso_pu_bacteria 2643221551 2643774744 274
107 3300046452 Ga0495617_016393 Ga0495617_016393_945_1814 275
108 3300049573 Ga0501037_0063576 Ga0501037_0063576_566_1414 275
109 3300049581 Ga0501047_0017044 Ga0501047_0017044_1274_2122 275
110 3300049586 Ga0501070_0009323 Ga0501070_0009323_3989_4837 275
111 3300049823 Ga0501044_0006432 Ga0501044_0006432_9946_10794 275
112 3300050490 nmdc:mga03n38_128_c1 nmdc:mga03n38_128_c1_14362_15198 275
113 3300050491 nmdc:mga00v17_35055_c1 nmdc:mga00v17_35055_c1_244_1080 275
114 3300050516 nmdc:mga0sz30_2523_c1 nmdc:mga0sz30_2523_c1_1092_1928 275
115 iso_pu_bacteria 2513237139 2513879706 275
116 3300047320 Ga0495672_0147148 Ga0495672_0147148_358_1188 276
117 3300031344 Ga0265316_10002963 Ga0265316_1000296313 277
118 3300031712 Ga0265342_10059448 Ga0265342_100594482 277
119 3300048091 Ga0495626_0001974 Ga0495626_0001974_9223_10074 278
120 3300046524 Ga0495648_0020823 Ga0495648_0020823_396_1253 280
121 3300001979 JGI24740J21852_10011948 JGI24740J21852_100119483 281
122 3300005327 Ga0070658_10174283 Ga0070658_101742832 281
123 3300005327 Ga0070658_10346824 Ga0070658_103468242 281
124 3300005336 Ga0070680_100097449 Ga0070680_1000974493 281
125 3300005339 Ga0070660_100038442 Ga0070660_1000384423 281
126 3300005339 Ga0070660_100214486 Ga0070660_1002144862 281
127 3300005344 Ga0070661_100005287 Ga0070661_1000052873 281
128 3300005347 Ga0070668_100580627 Ga0070668_1005806271 281
129 3300005353 Ga0070669_100000042 Ga0070669_10000004242 281
130 3300005355 Ga0070671_100000010 Ga0070671_1000000105 281
131 3300005366 Ga0070659_100007435 Ga0070659_1000074353 281
132 3300005435 Ga0070714_100052260 Ga0070714_1000522602 281
133 3300005455 Ga0070663_100038044 Ga0070663_1000380443 281
134 3300005458 Ga0070681_10119512 Ga0070681_101195123 281
135 3300005530 Ga0070679_100129264 Ga0070679_1001292642 281
136 3300005543 Ga0070672_100390097 Ga0070672_1003900972 281
137 3300005547 Ga0070693_100083020 Ga0070693_1000830202 281
138 3300005617 Ga0068859_100000311 Ga0068859_10000031133 281
139 3300005618 Ga0068864_100022733 Ga0068864_1000227334 281
140 3300005719 Ga0068861_100029159 Ga0068861_1000291594 281
141 3300005841 Ga0068863_100422258 Ga0068863_1004222581 281
142 3300005842 Ga0068858_100007315 Ga0068858_1000073159 281
143 3300005843 Ga0068860_100491364 Ga0068860_1004913642 281
144 3300005844 Ga0068862_100002957 Ga0068862_1000029577 281
145 3300006358 Ga0068871_100552464 Ga0068871_1005524642 281
146 3300006931 Ga0097620_100000311 Ga0097620_10000031120 281
147 3300009011 Ga0105251_10025322 Ga0105251_100253221 281
148 3300009093 Ga0105240_10044263 Ga0105240_100442632 281
149 3300009101 Ga0105247_10007127 Ga0105247_100071271 281
150 3300009177 Ga0105248_10062585 Ga0105248_100625851 281
151 3300009177 Ga0105248_10111975 Ga0105248_101119753 281
152 3300013105 Ga0157369_10195229 Ga0157369_101952293 281
153 3300014325 Ga0163163_10193080 Ga0163163_101930801 281
154 3300017792 Ga0163161_10114035 Ga0163161_101140353 281
155 3300025315 Ga0207697_10000004 Ga0207697_1000000447 281
156 3300025900 Ga0207710_10009816 Ga0207710_100098161 281
157 3300025903 Ga0207680_10000110 Ga0207680_1000011019 281
158 3300025913 Ga0207695_10030886 Ga0207695_100308862 281
159 3300025923 Ga0207681_10000002 Ga0207681_10000002361 281
160 3300025925 Ga0207650_10005718 Ga0207650_100057186 281
161 3300025929 Ga0207664_10134441 Ga0207664_101344412 281
162 3300025931 Ga0207644_10000002 Ga0207644_10000002359 281
163 3300025941 Ga0207711_10070000 Ga0207711_100700003 281
164 3300025961 Ga0207712_10002950 Ga0207712_1000295015 281
165 3300025972 Ga0207668_10008599 Ga0207668_100085994 281
166 3300025986 Ga0207658_10019657 Ga0207658_100196574 281
167 3300026035 Ga0207703_10091886 Ga0207703_100918862 281
168 3300026088 Ga0207641_10008470 Ga0207641_1000847011 281
169 3300026118 Ga0207675_100004081 Ga0207675_1000040813 281
170 3300028379 Ga0268266_10024131 Ga0268266_100241316 281
171 3300028380 Ga0268265_10000260 Ga0268265_1000026026 281
172 3300028381 Ga0268264_10000010 Ga0268264_10000010575 281
173 3300037466 Ga0395898_0419388 Ga0395898_0419388_205_1050 281
174 3300037471 Ga0395905_0019320 Ga0395905_0019320_555_1400 281
175 3300038443 Ga0395901_0468923 Ga0395901_0468923_42_887 281
176 3300044694 Ga0466963_0149624 Ga0466963_0149624_95_940 281
177 3300045976 Ga0466967_0389406 Ga0466967_0389406_319_1164 281
178 3300046452 Ga0495617_037282 Ga0495617_037282_303_1172 281
179 3300048909 Ga0496106_0247055 Ga0496106_0247055_432_1277 281
180 3300048910 Ga0496107_0017382 Ga0496107_0017382_2471_3316 281
181 3300048913 Ga0496110_0020261 Ga0496110_0020261_1416_2261 281
182 3300048914 Ga0496111_0085722 Ga0496111_0085722_58_903 281
183 3300048924 Ga0496121_0000584 Ga0496121_0000584_43755_44645 281
184 3300048924 Ga0496121_0024516 Ga0496121_0024516_251_1096 281
185 3300048929 Ga0496126_0013585 Ga0496126_0013585_6399_7289 281
186 3300053118 Ga0500594_0002372 Ga0500594_0002372_1554_2423 281
187 3300001904 JGI24736J21556_1000437 JGI24736J21556_10004375 282
188 3300001915 JGI24741J21665_1000334 JGI24741J21665_100033413 282
189 3300001979 JGI24740J21852_10000812 JGI24740J21852_100008125 282
190 3300001990 JGI24737J22298_10000502 JGI24737J22298_100005025 282
191 3300002067 JGI24735J21928_10003430 JGI24735J21928_100034302 282
192 3300002075 JGI24738J21930_10025165 JGI24738J21930_100251652 282
193 3300005339 Ga0070660_100170787 Ga0070660_1001707872 282
194 3300005344 Ga0070661_100003061 Ga0070661_1000030619 282
195 3300005539 Ga0068853_100236568 Ga0068853_1002365682 282
196 3300005564 Ga0070664_100054500 Ga0070664_1000545002 282
197 3300005577 Ga0068857_100005694 Ga0068857_1000056945 282
198 3300005614 Ga0068856_100008942 Ga0068856_1000089429 282
199 3300005616 Ga0068852_100278239 Ga0068852_1002782392 282
200 3300005834 Ga0068851_10001432 Ga0068851_1000143210 282
201 3300009093 Ga0105240_10016998 Ga0105240_100169981 282
202 3300009174 Ga0105241_10008254 Ga0105241_100082545 282
203 3300009545 Ga0105237_10005719 Ga0105237_1000571912 282
204 3300009551 Ga0105238_10008065 Ga0105238_100080658 282
205 3300009978 Ga0105148_100131 Ga0105148_1001318 282
206 3300013100 Ga0157373_10021100 Ga0157373_100211005 282
207 3300013102 Ga0157371_10018486 Ga0157371_100184863 282
208 3300013104 Ga0157370_10107340 Ga0157370_101073402 282
209 3300013105 Ga0157369_10035346 Ga0157369_100353464 282
210 3300013307 Ga0157372_10028142 Ga0157372_100281428 282
211 3300025321 Ga0207656_10040370 Ga0207656_100403702 282
212 3300025904 Ga0207647_10002739 Ga0207647_100027395 282
213 3300025913 Ga0207695_10084741 Ga0207695_100847412 282
214 3300025914 Ga0207671_10005299 Ga0207671_100052994 282
215 3300025920 Ga0207649_10374187 Ga0207649_103741871 282
216 3300025924 Ga0207694_10004211 Ga0207694_100042118 282
217 3300025945 Ga0207679_10016420 Ga0207679_100164202 282
218 3300025981 Ga0207640_10046797 Ga0207640_100467973 282
219 3300026041 Ga0207639_10074724 Ga0207639_100747242 282
220 3300026067 Ga0207678_10003215 Ga0207678_100032154 282
221 3300026078 Ga0207702_10015291 Ga0207702_100152914 282
222 3300026116 Ga0207674_10016424 Ga0207674_100164243 282
223 3300026142 Ga0207698_10002818 Ga0207698_100028188 282
224 3300031548 Ga0307408_100000307 Ga0307408_10000030710 282
225 3300031731 Ga0307405_10000067 Ga0307405_100000678 282
226 3300031901 Ga0307406_10010980 Ga0307406_100109805 282
227 3300031911 Ga0307412_10106485 Ga0307412_101064852 282
228 3300048924 Ga0496121_0002140 Ga0496121_0002140_13991_14851 282
229 3300048927 Ga0496124_0191023 Ga0496124_0191023_683_1531 282
230 3300048928 Ga0496125_0006908 Ga0496125_0006908_2436_3284 282
231 3300049663 Ga0501223_000252 Ga0501223_000252_6494_7351 282
232 3300049669 Ga0501235_034474 Ga0501235_034474_270_1127 282
233 3300049705 Ga0501225_0000393 Ga0501225_0000393_6493_7350 282
234 3300053122 Ga0500608_012872 Ga0500608_012872_2535_3395 282
235 3300053158 Ga0500627_0014684 Ga0500627_0014684_434_1312 282
236 3300053177 Ga0500636_0022292 Ga0500636_0022292_1601_2461 282

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00456

Transketolase_N

Transketolase, thiamine diphosphate binding domain

28

291

0.92

PF00676

E1_dh

Dehydrogenase E1 component

107

255

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6yak-assembly1.cif.gz_CCC split gene transketolase, active alpha2beta2 heterotetramer 0.9773 13 281
3hyl-assembly1.cif.gz_A crystal structure of transketolase from bacillus anthracis 0.9543 15 276
6ha3-assembly1.cif.gz_A human transketolase variant e160q in covalent complex with donor ketose d-fructose-6-phosphate 0.9507 14 278
3uk1-assembly1.cif.gz_B crystal structure of a transketolase from burkholderia thailandensis with an oxidized cysteinesulfonic acid in the active site 0.9496 12 277
1qgd-assembly1.cif.gz_B transketolase from escherichia coli 0.9476 12 276
ID Description Score Start End Superfamily
af_Q58094_1_274_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9758 13 276 3.40.50.970
af_Q58094_1_274_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9374 13 276 3.40.50.970
4c7vA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9344 11 276 3.40.50.970
3m7iA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.931 14 276 3.40.50.970
3rimD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9292 16 276 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A1H8DNV2-F1-model_v4 Transketolase 0.9933 12 275
AF-A0A381TI56-F1-model_v4 Transketolase N-terminal domain-containing protein 0.9886 12 277
AF-A0A1Q7D0T6-F1-model_v4 Transketolase 0.988 29 277 GO:0000287
AF-A0A382EUQ1-F1-model_v4 Transketolase N-terminal domain-containing protein 0.988 29 185
AF-X0VW12-F1-model_v4 Transketolase N-terminal domain-containing protein 0.9879 12 214

Feature Viewer

pLDDT pTM Quality
90.75 0.91 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map