F348366

General Info

Members Datasets Scaffolds Average Seq Length
235 176 214 272

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0005860|Ga0451577_0005860_8460_9371
Length 303
Sequence MTIAADGQRRDPRDNAAMNTHDDPYADDLSTDRLPTGIPLGREVAYPDHYDPGLLFPIPRAQGRAAIGVDVAALPFVGHDRWHAYELSWLDARGKPVVATATLTVPADSPQLIESKSLKLYLNSLNATRFDSPERVREIVCADLSAAAGAPVAVVFGLPPFAGSDDEAVSIDDQDLAIDRYGPPDAALLSADAGEAVVETLTSALLKSNCPVTGQPDWASLRIAYRGPRIDRAGLLRYLVSFRDHAEFHEQCVERVFVDLLARCRPAMLSVEARYTRRGGLDINPWRATPGTPSPPPGRDPRQ

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
3 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
4 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
5 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
6 2643221593 Lysobacter sp. Root690 Isolate Unclassified
7 2643221695 Lysobacter sp. Root494 Isolate Unclassified
8 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
9 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
10 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
11 2842914999 Luteibacter sp. R-72151 Isolate Unclassified
12 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
13 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
14 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
15 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
16 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
17 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
18 2919513703 Luteimonas sp. 3794 Isolate Unclassified
19 2919675420 Luteimonas terrae 4099 Isolate Unclassified
20 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
21 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
22 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
23 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
24 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
25 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
26 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
27 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
28 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
29 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
30 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
31 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
32 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
33 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
34 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
35 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
38 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
39 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
40 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
41 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
42 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
43 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
44 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
45 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
46 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
47 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
48 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
49 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
50 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
51 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
52 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
53 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
54 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
55 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
56 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
57 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
58 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
59 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
60 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
61 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
62 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
63 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
64 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
65 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
66 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
67 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
68 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
69 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
70 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
71 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
73 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
74 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
75 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
76 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
77 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
78 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
81 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
83 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
84 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
85 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
86 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
103 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
104 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
105 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
106 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
107 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
108 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
109 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
110 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
111 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
112 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
115 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
116 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
117 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
118 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
119 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
120 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
121 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
122 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
123 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
124 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
125 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
126 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
127 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
128 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
129 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
130 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
131 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
132 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
133 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
134 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
135 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
136 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
137 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
138 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
139 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
140 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
141 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
142 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
143 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
144 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
145 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
146 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
147 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
148 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
149 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
150 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
151 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
152 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
153 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
154 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
155 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
156 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
157 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
158 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
159 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
160 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
162 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
163 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
164 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
166 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
168 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
169 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
170 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
171 3300049762 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control Metagenome Rhizosphere
172 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
173 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
174 3300053128 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 endosphere Metagenome Endosphere
175 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
176 3300053734 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.06
Metatranscriptomes 0
Isolates 8.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.45
Nodule 0
Rhizoplane 4.26
Rhizosphere 65.11
Stem 0
Stem Tuber 0
Unclassified 13.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1154499 2162886007 Bacteria 5085
2 SwRhRL2b_contig_1283574 2162886007 Bacteria 2180
3 JGI25162J39368_1000580 3300002737 Bacteria 26829
4 JGI25162J39368_1004072 3300002737 Bacteria 3639
5 JGI25157J39369_1000659 3300002741 Bacteria 19127
6 JGI25164J39214_1000774 3300002772 Bacteria 11655
7 JGI25152J39213_1000039 3300002773 Bacteria 89573
8 JGI25150J39212_1000125 3300002774 Bacteria 43386
9 JGI25151J46595_10000154 3300003187 Bacteria 89582
10 JGI25151J46595_10000227 3300003187 Bacteria 66708
11 JGI25165J46597_1001476 3300003214 Bacteria 12142
12 JGI25153J46596_10000120 3300003215 Bacteria 89582
13 Ga0055537_1000703 3300003773 Bacteria 17393
14 Ga0055524_1000421 3300003775 Bacteria 35588
15 Ga0055536_1002633 3300003781 Bacteria 9995
16 Ga0055534_1000007 3300003784 Bacteria 221693
17 Ga0055528_1000010 3300003790 Bacteria 221449
18 Ga0065704_10071672 3300005289 Bacteria 10303
19 Ga0070658_10254240 3300005327 Bacteria 1491
20 Ga0070670_100042180 3300005331 Bacteria 3922
21 Ga0068869_100194493 3300005334 Bacteria 1597
22 Ga0070680_100118100 3300005336 Bacteria 2212
23 Ga0070682_100050966 3300005337 Bacteria 2586
24 Ga0070660_100079689 3300005339 Bacteria 2569
25 Ga0070691_10071489 3300005341 Bacteria 1684
26 Ga0070668_100006881 3300005347 Bacteria 8427
27 Ga0070668_100086157 3300005347 Bacteria 2470
28 Ga0070659_100117980 3300005366 Bacteria 2146
29 Ga0070709_10076909 3300005434 Bacteria 2168
30 Ga0070714_100288168 3300005435 Bacteria 1527
31 Ga0070713_100011550 3300005436 Bacteria 6436
32 Ga0070713_100401143 3300005436 Bacteria 1281
33 Ga0070705_100024342 3300005440 Bacteria 3266
34 Ga0070706_100025021 3300005467 Bacteria 5495
35 Ga0070699_100053433 3300005518 Bacteria 3496
36 Ga0070665_100369931 3300005548 Bacteria 1440
37 Ga0068857_100320247 3300005577 Bacteria 1432
38 Ga0068864_100048405 3300005618 Bacteria 3654
39 Ga0075364_10067297 3300006051 Bacteria 2354
40 Ga0075364_10121714 3300006051 Bacteria 1747
41 Ga0075364_10230827 3300006051 Bacteria 1257
42 Ga0070712_100102427 3300006175 Bacteria 2120
43 Ga0075362_10029720 3300006177 Bacteria 2357
44 Ga0105251_10006562 3300009011 Bacteria 7378
45 Ga0105244_10022258 3300009036 Bacteria 3490
46 Ga0105241_10125453 3300009174 Bacteria 2072
47 Ga0105248_10151328 3300009177 Bacteria 2618
48 Ga0105238_10419277 3300009551 Bacteria 1333
49 Ga0105032_100113 3300009979 Bacteria 8394
50 Ga0105239_10001675 3300010375 Bacteria 29217
51 Ga0105239_10148083 3300010375 Bacteria 2619
52 Ga0157370_10000342 3300013104 Bacteria 58828
53 Ga0157370_10043190 3300013104 Bacteria 4339
54 Ga0157370_10087096 3300013104 Bacteria 2934
55 Ga0157370_10207829 3300013104 Bacteria 1815
56 Ga0157370_10331185 3300013104 Bacteria 1404
57 Ga0157369_10123977 3300013105 Bacteria 2740
58 Ga0163162_10386122 3300013306 Bacteria 1533
59 Ga0157372_10769523 3300013307 Bacteria 1119
60 Ga0157380_10175019 3300014326 Bacteria 1879
61 Ga0182008_10000387 3300014497 Bacteria 34074
62 Ga0182008_10061742 3300014497 Bacteria 1847
63 Ga0209674_103700 3300025226 Bacteria 2720
64 Ga0207427_100191 3300025231 Bacteria 60860
65 Ga0209437_100167 3300025233 Bacteria 144661
66 Ga0207425_1000074 3300025245 Bacteria 108738
67 Ga0209026_1000010 3300025250 Bacteria 511986
68 Ga0209129_1000150 3300025258 Bacteria 113886
69 Ga0209233_1000046 3300025261 Bacteria 470971
70 Ga0209565_1000002 3300025263 Bacteria 1423083
71 Ga0209673_1000002 3300025273 Bacteria 1423083
72 Ga0209675_1000002 3300025291 Bacteria 1423083
73 Ga0209676_1000035 3300025292 Bacteria 459284
74 Ga0209025_1000021 3300025294 Bacteria 593083
75 Ga0209025_1000048 3300025294 Bacteria 335574
76 Ga0209025_1006531 3300025294 Bacteria 9007
77 Ga0209564_1000004 3300025295 Bacteria 1424639
78 Ga0209758_1000056 3300025297 Bacteria 335574
79 Ga0209256_1000004 3300025299 Bacteria 1424643
80 Ga0207699_10069856 3300025906 Bacteria 2143
81 Ga0207645_10018696 3300025907 Bacteria 4551
82 Ga0207684_10107015 3300025910 Bacteria 2392
83 Ga0207657_10002703 3300025919 Bacteria 19119
84 Ga0207649_10196085 3300025920 Bacteria 1423
85 Ga0207652_10102451 3300025921 Bacteria 2530
86 Ga0207694_10039445 3300025924 Bacteria 3634
87 Ga0207700_10080041 3300025928 Bacteria 2546
88 Ga0207700_10286199 3300025928 Bacteria 1419
89 Ga0207664_10085065 3300025929 Bacteria 2580
90 Ga0207644_10011076 3300025931 Bacteria 5956
91 Ga0207665_10020763 3300025939 Bacteria 4319
92 Ga0207711_10465442 3300025941 Bacteria 1177
93 Ga0207689_10007316 3300025942 Bacteria 9689
94 Ga0207651_10067014 3300025960 Bacteria 2525
95 Ga0207641_10053499 3300026088 Bacteria 3423
96 Ga0207674_10007609 3300026116 Bacteria 12622
97 Ga0209971_1048834 3300027682 Bacteria 1022
98 Ga0209974_10024029 3300027876 Bacteria 2017
99 Ga0316177_1089656 3300030731 Bacteria 2056
100 Ga0316176_1188359 3300030732 Bacteria 5632
101 Ga0265332_10088961 3300031238 Bacteria 1307
102 Ga0307405_10164161 3300031731 Bacteria 1577
103 Ga0307413_10021044 3300031824 Bacteria 3483
104 Ga0307406_10011552 3300031901 Bacteria 5017
105 Ga0307407_10155795 3300031903 Bacteria 1490
106 Ga0307412_10321342 3300031911 Bacteria 1231
107 Ga0307409_100584392 3300031995 Bacteria 1101
108 Ga0307414_10506986 3300032004 Bacteria 1068
109 Ga0307414_10682476 3300032004 Bacteria 928
110 Ga0373926_0033778 3300035083 Bacteria 1810
111 Ga0395899_0013802 3300037312 Bacteria 6175
112 Ga0395898_0069576 3300037466 Bacteria 3405
113 Ga0395898_0259087 3300037466 Bacteria 1659
114 Ga0395905_0002229 3300037471 Bacteria 21867
115 Ga0395905_0167081 3300037471 Bacteria 2067
116 Ga0395901_0015451 3300038443 Bacteria 7775
117 Ga0395901_0237431 3300038443 Bacteria 1902
118 Ga0237819_00138 3300038705 Bacteria 27496
119 Ga0439436_0010485 3300041404 Bacteria 2824
120 Ga0439436_0015690 3300041404 Bacteria 2276
121 Ga0439436_0048909 3300041404 Bacteria 1198
122 Ga0439439_0008075 3300041406 Bacteria 2475
123 Ga0439447_001651 3300041407 Bacteria 8184
124 Ga0439466_0039297 3300041411 Bacteria 1587
125 Ga0439466_0084293 3300041411 Bacteria 1000
126 Ga0439465_0000117 3300041413 Bacteria 18793
127 Ga0439465_0006596 3300041413 Bacteria 3687
128 Ga0451837_0085975 3300041494 Bacteria 1575
129 Ga0451853_3303827 3300041512 Bacteria 1783
130 Ga0439449_0000088 3300042007 Bacteria 30038
131 Ga0439449_0006934 3300042007 Bacteria 4319
132 Ga0439449_0006982 3300042007 Bacteria 4302
133 Ga0439434_0016982 3300042435 Bacteria 2176
134 Ga0450901_003623 3300042533 Bacteria 1609
135 Ga0451577_0005860 3300042876 Bacteria 12422
136 Ga0495627_032617 3300046453 Bacteria 1638
137 Ga0495638_0008593 3300046460 Bacteria 7228
138 Ga0495605_0091695 3300046474 Bacteria 1407
139 Ga0495606_0007884 3300046507 Bacteria 9396
140 Ga0495663_0003664 3300046525 Bacteria 4400
141 Ga0495663_0019678 3300046525 Bacteria 1934
142 Ga0495663_0019788 3300046525 Bacteria 1929
143 Ga0495621_0000860 3300046539 Bacteria 7719
144 Ga0495633_0028425 3300046558 Bacteria 2725
145 Ga0495633_0084162 3300046558 Bacteria 1479
146 Ga0495633_0192538 3300046558 Bacteria 937
147 Ga0495656_0000374 3300046615 Bacteria 14977
148 Ga0495656_0020938 3300046615 Bacteria 2541
149 Ga0495656_0094159 3300046615 Bacteria 1375
150 Ga0495668_0001171 3300046616 Bacteria 26710
151 Ga0495668_0007962 3300046616 Bacteria 6684
152 Ga0495659_0015259 3300046664 Bacteria 2524
153 Ga0495659_0018735 3300046664 Bacteria 2310
154 Ga0495588_0118495 3300046674 Bacteria 1395
155 Ga0495636_0007074 3300047318 Bacteria 4413
156 Ga0495636_0010476 3300047318 Bacteria 3661
157 Ga0495636_0013288 3300047318 Bacteria 3266
158 Ga0495636_0047971 3300047318 Bacteria 1784
159 Ga0495685_005380 3300047447 Bacteria 4178
160 Ga0495681_0038656 3300047470 Bacteria 2337
161 Ga0495681_0040435 3300047470 Bacteria 2270
162 Ga0496101_0127519 3300048904 Bacteria 1929
163 Ga0496106_0172408 3300048909 Bacteria 1715
164 Ga0496108_0107513 3300048911 Bacteria 2382
165 Ga0496109_0073772 3300048912 Bacteria 3136
166 Ga0496110_0575423 3300048913 Bacteria 1023
167 Ga0496112_0101560 3300048915 Bacteria 2846
168 Ga0496112_0109277 3300048915 Bacteria 2735
169 Ga0496113_0041322 3300048916 Bacteria 3402
170 Ga0496113_0162662 3300048916 Bacteria 1765
171 Ga0496114_0003078 3300048917 Bacteria 12782
172 Ga0496116_0022315 3300048919 Bacteria 4746
173 Ga0496117_0001582 3300048920 Bacteria 32311
174 Ga0496117_0118681 3300048920 Bacteria 1630
175 Ga0496118_0001471 3300048921 Bacteria 35275
176 Ga0496118_0048533 3300048921 Bacteria 3277
177 Ga0496122_0032341 3300048925 Bacteria 4329
178 Ga0496122_0215730 3300048925 Bacteria 1106
179 Ga0496123_0019096 3300048926 Bacteria 5412
180 Ga0496124_0000022 3300048927 Bacteria 421020
181 Ga0496124_0003764 3300048927 Bacteria 18243
182 Ga0496124_0024725 3300048927 Bacteria 5455
183 Ga0496124_0026107 3300048927 Bacteria 5273
184 Ga0496124_0393498 3300048927 Bacteria 964
185 Ga0496126_0109677 3300048929 Bacteria 2405
186 Ga0501031_0041088 3300049568 Bacteria 3020
187 Ga0501031_0117466 3300049568 Bacteria 1738
188 Ga0501034_0001794 3300049571 Bacteria 27425
189 Ga0501034_0008200 3300049571 Bacteria 11074
190 Ga0501034_0009641 3300049571 Bacteria 10098
191 Ga0501034_0019037 3300049571 Bacteria 7033
192 Ga0501034_0121228 3300049571 Bacteria 2601
193 Ga0501036_0016245 3300049572 Bacteria 6217
194 Ga0501037_0019933 3300049573 Bacteria 4950
195 Ga0501037_0149256 3300049573 Bacteria 1671
196 Ga0501037_0229577 3300049573 Bacteria 1303
197 Ga0501038_0054126 3300049574 Bacteria 3451
198 Ga0501038_0112472 3300049574 Bacteria 2254
199 Ga0501039_0046544 3300049575 Bacteria 3351
200 Ga0501047_0068374 3300049581 Bacteria 3421
201 Ga0501070_0042764 3300049586 Bacteria 3773
202 Ga0501070_0153711 3300049586 Bacteria 1898
203 Ga0501073_0062240 3300049589 Bacteria 2603
204 Ga0501202_015510 3300049652 Bacteria 1469
205 Ga0501080_0616291 3300049742 Bacteria 962
206 Ga0501265_003224 3300049762 Bacteria 1855
207 Ga0501035_0042713 3300049822 Bacteria 4088
208 nmdc:mga00v17_103214_c1 3300050491 Bacteria 1802
209 nmdc:mga00v17_103680_c1 3300050491 Bacteria 1798
210 nmdc:mga00v17_18627_c1 3300050491 Bacteria 3948
211 nmdc:mga00v17_235695_c1 3300050491 Bacteria 1186
212 Ga0500626_093715 3300053128 Bacteria 1316
213 Ga0500634_0000720 3300053161 Bacteria 11392
214 Ga0500565_003348 3300053734 Bacteria 1272

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300042007 Ga0439449_0006982 Ga0439449_0006982_18_704 224
2 3300006177 Ga0075362_10029720 Ga0075362_100297203 242
3 3300048911 Ga0496108_0107513 Ga0496108_0107513_653_1480 256
4 3300048916 Ga0496113_0041322 Ga0496113_0041322_1675_2502 256
5 iso_pu_bacteria 2643221579 2643907369 259
6 3300005334 Ga0068869_100194493 Ga0068869_1001944932 262
7 3300005339 Ga0070660_100079689 Ga0070660_1000796892 262
8 3300005341 Ga0070691_10071489 Ga0070691_100714891 262
9 3300005434 Ga0070709_10076909 Ga0070709_100769092 262
10 3300005435 Ga0070714_100288168 Ga0070714_1002881682 262
11 3300005436 Ga0070713_100011550 Ga0070713_1000115502 262
12 3300005440 Ga0070705_100024342 Ga0070705_1000243422 262
13 3300005467 Ga0070706_100025021 Ga0070706_1000250214 262
14 3300005518 Ga0070699_100053433 Ga0070699_1000534332 262
15 3300006175 Ga0070712_100102427 Ga0070712_1001024272 262
16 3300009174 Ga0105241_10125453 Ga0105241_101254532 262
17 3300010375 Ga0105239_10148083 Ga0105239_101480833 262
18 3300013104 Ga0157370_10043190 Ga0157370_100431904 262
19 3300013105 Ga0157369_10123977 Ga0157369_101239773 262
20 3300013307 Ga0157372_10769523 Ga0157372_107695232 262
21 3300025906 Ga0207699_10069856 Ga0207699_100698563 262
22 3300025907 Ga0207645_10018696 Ga0207645_100186962 262
23 3300025910 Ga0207684_10107015 Ga0207684_101070152 262
24 3300025919 Ga0207657_10002703 Ga0207657_100027039 262
25 3300025920 Ga0207649_10196085 Ga0207649_101960853 262
26 3300025921 Ga0207652_10102451 Ga0207652_101024512 262
27 3300025928 Ga0207700_10080041 Ga0207700_100800412 262
28 3300025939 Ga0207665_10020763 Ga0207665_100207634 262
29 3300025942 Ga0207689_10007316 Ga0207689_100073169 262
30 3300026116 Ga0207674_10007609 Ga0207674_100076096 262
31 3300035083 Ga0373926_0033778 Ga0373926_0033778_259_1185 262
32 3300003781 Ga0055536_1002633 Ga0055536_10026334 263
33 3300041512 Ga0451853_3303827 Ga0451853_3303827_643_1455 263
34 iso_pu_bacteria 2842914999 2842916821 264
35 iso_pu_bacteria 2894414249 2894414842 265
36 3300002737 JGI25162J39368_1000580 JGI25162J39368_10005808 266
37 3300002737 JGI25162J39368_1004072 JGI25162J39368_10040722 266
38 3300002741 JGI25157J39369_1000659 JGI25157J39369_10006596 266
39 3300002772 JGI25164J39214_1000774 JGI25164J39214_10007748 266
40 3300003214 JGI25165J46597_1001476 JGI25165J46597_10014768 266
41 3300005327 Ga0070658_10254240 Ga0070658_102542402 266
42 3300005336 Ga0070680_100118100 Ga0070680_1001181002 266
43 3300005366 Ga0070659_100117980 Ga0070659_1001179802 266
44 3300005436 Ga0070713_100401143 Ga0070713_1004011431 266
45 3300005577 Ga0068857_100320247 Ga0068857_1003202472 266
46 3300009551 Ga0105238_10419277 Ga0105238_104192771 266
47 3300013104 Ga0157370_10000342 Ga0157370_100003423 266
48 3300014326 Ga0157380_10175019 Ga0157380_101750192 266
49 3300025226 Ga0209674_103700 Ga0209674_1037004 266
50 3300025231 Ga0207427_100191 Ga0207427_1001918 266
51 3300025233 Ga0209437_100167 Ga0209437_10016757 266
52 3300025250 Ga0209026_1000010 Ga0209026_1000010282 266
53 3300025261 Ga0209233_1000046 Ga0209233_100004657 266
54 3300025924 Ga0207694_10039445 Ga0207694_100394453 266
55 3300025928 Ga0207700_10286199 Ga0207700_102861991 266
56 3300025929 Ga0207664_10085065 Ga0207664_100850652 266
57 3300031238 Ga0265332_10088961 Ga0265332_100889611 266
58 3300046674 Ga0495588_0118495 Ga0495588_0118495_166_999 266
59 3300049568 Ga0501031_0117466 Ga0501031_0117466_482_1306 266
60 3300049571 Ga0501034_0009641 Ga0501034_0009641_5503_6327 266
61 3300049572 Ga0501036_0016245 Ga0501036_0016245_2968_3792 266
62 3300049573 Ga0501037_0229577 Ga0501037_0229577_419_1243 266
63 3300049586 Ga0501070_0042764 Ga0501070_0042764_2859_3683 266
64 iso_pu_bacteria 2571042365 2572255673 266
65 iso_pu_bacteria 2643221593 2643974800 266
66 iso_pu_bacteria 2747842501 2748017645 266
67 iso_pu_bacteria 2842780639 2842784091 266
68 iso_pu_bacteria 2995948881 2995954078 266
69 3300013306 Ga0163162_10386122 Ga0163162_103861221 267
70 3300037466 Ga0395898_0259087 Ga0395898_0259087_371_1180 267
71 3300037471 Ga0395905_0167081 Ga0395905_0167081_269_1078 267
72 3300038443 Ga0395901_0237431 Ga0395901_0237431_111_920 267
73 3300046525 Ga0495663_0019788 Ga0495663_0019788_514_1338 267
74 3300046539 Ga0495621_0000860 Ga0495621_0000860_3509_4333 267
75 3300046615 Ga0495656_0094159 Ga0495656_0094159_430_1254 267
76 3300046616 Ga0495668_0007962 Ga0495668_0007962_3944_4759 267
77 3300046664 Ga0495659_0015259 Ga0495659_0015259_1308_2132 267
78 3300047318 Ga0495636_0047971 Ga0495636_0047971_687_1511 267
79 iso_pu_bacteria 2576861471 2578456682 267
80 iso_pu_bacteria 2842757796 2842760797 267
81 iso_pu_bacteria 2857442823 2857445447 267
82 iso_pu_bacteria 2895498888 2895503261 267
83 iso_pu_bacteria 2895511927 2895513087 267
84 iso_pu_bacteria 2895522137 2895523099 267
85 iso_pu_bacteria 2895525241 2895527002 267
86 iso_pu_bacteria 2919513703 2919513836 267
87 iso_pu_bacteria 2919675420 2919678173 267
88 iso_pu_bacteria 2939622612 2939624518 267
89 3300005331 Ga0070670_100042180 Ga0070670_1000421806 268
90 3300005347 Ga0070668_100006881 Ga0070668_1000068815 268
91 3300009177 Ga0105248_10151328 Ga0105248_101513281 268
92 3300009979 Ga0105032_100113 Ga0105032_1001132 268
93 3300010375 Ga0105239_10001675 Ga0105239_1000167523 268
94 3300025931 Ga0207644_10011076 Ga0207644_100110765 268
95 3300025941 Ga0207711_10465442 Ga0207711_104654421 268
96 3300037312 Ga0395899_0013802 Ga0395899_0013802_1356_2168 268
97 3300037466 Ga0395898_0069576 Ga0395898_0069576_1481_2293 268
98 3300037471 Ga0395905_0002229 Ga0395905_0002229_18728_19540 268
99 3300038443 Ga0395901_0015451 Ga0395901_0015451_4389_5201 268
100 3300048912 Ga0496109_0073772 Ga0496109_0073772_811_1623 268
101 3300048915 Ga0496112_0109277 Ga0496112_0109277_21_833 268
102 3300048927 Ga0496124_0003764 Ga0496124_0003764_136_966 268
103 3300049762 Ga0501265_003224 Ga0501265_003224_402_1211 268
104 iso_pu_bacteria 2643221581 2643914360 268
105 iso_pu_bacteria 2923516293 2923516783 268
106 3300005618 Ga0068864_100048405 Ga0068864_1000484054 269
107 3300026088 Ga0207641_10053499 Ga0207641_100534992 269
108 3300027682 Ga0209971_1048834 Ga0209971_10488341 269
109 3300031731 Ga0307405_10164161 Ga0307405_101641612 269
110 3300031824 Ga0307413_10021044 Ga0307413_100210441 269
111 3300031903 Ga0307407_10155795 Ga0307407_101557952 269
112 3300031995 Ga0307409_100584392 Ga0307409_1005843921 269
113 3300041404 Ga0439436_0015690 Ga0439436_0015690_691_1527 269
114 3300041494 Ga0451837_0085975 Ga0451837_0085975_485_1300 269
115 3300046615 Ga0495656_0000374 Ga0495656_0000374_11425_12246 269
116 3300047318 Ga0495636_0007074 Ga0495636_0007074_2636_3457 269
117 3300048904 Ga0496101_0127519 Ga0496101_0127519_498_1319 269
118 3300048915 Ga0496112_0101560 Ga0496112_0101560_1087_1908 269
119 3300048916 Ga0496113_0162662 Ga0496113_0162662_49_870 269
120 3300049571 Ga0501034_0001794 Ga0501034_0001794_14360_15172 269
121 3300003187 JGI25151J46595_10000227 JGI25151J46595_100002271 270
122 3300003773 Ga0055537_1000703 Ga0055537_100070312 270
123 3300003775 Ga0055524_1000421 Ga0055524_100042133 270
124 3300003784 Ga0055534_1000007 Ga0055534_1000007195 270
125 3300003790 Ga0055528_1000010 Ga0055528_100001011 270
126 3300005337 Ga0070682_100050966 Ga0070682_1000509662 270
127 3300005347 Ga0070668_100086157 Ga0070668_1000861571 270
128 3300006051 Ga0075364_10067297 Ga0075364_100672973 270
129 3300006051 Ga0075364_10121714 Ga0075364_101217142 270
130 3300006051 Ga0075364_10230827 Ga0075364_102308272 270
131 3300014497 Ga0182008_10061742 Ga0182008_100617421 270
132 3300025263 Ga0209565_1000002 Ga0209565_1000002843 270
133 3300025273 Ga0209673_1000002 Ga0209673_1000002843 270
134 3300025291 Ga0209675_1000002 Ga0209675_1000002843 270
135 3300025294 Ga0209025_1000021 Ga0209025_1000021208 270
136 3300025294 Ga0209025_1006531 Ga0209025_10065319 270
137 3300025295 Ga0209564_1000004 Ga0209564_1000004844 270
138 3300025299 Ga0209256_1000004 Ga0209256_1000004844 270
139 3300025960 Ga0207651_10067014 Ga0207651_100670142 270
140 3300027876 Ga0209974_10024029 Ga0209974_100240293 270
141 3300031901 Ga0307406_10011552 Ga0307406_100115524 270
142 3300031911 Ga0307412_10321342 Ga0307412_103213422 270
143 3300032004 Ga0307414_10682476 Ga0307414_106824761 270
144 3300038705 Ga0237819_00138 Ga0237819_00138_3332_4147 270
145 3300041404 Ga0439436_0010485 Ga0439436_0010485_828_1640 270
146 3300041404 Ga0439436_0048909 Ga0439436_0048909_11_823 270
147 3300041406 Ga0439439_0008075 Ga0439439_0008075_930_1742 270
148 3300041407 Ga0439447_001651 Ga0439447_001651_7258_8070 270
149 3300041411 Ga0439466_0039297 Ga0439466_0039297_524_1336 270
150 3300041411 Ga0439466_0084293 Ga0439466_0084293_108_920 270
151 3300041413 Ga0439465_0000117 Ga0439465_0000117_1595_2407 270
152 3300042007 Ga0439449_0000088 Ga0439449_0000088_8609_9421 270
153 3300042007 Ga0439449_0006934 Ga0439449_0006934_165_977 270
154 3300042435 Ga0439434_0016982 Ga0439434_0016982_1081_1893 270
155 3300046453 Ga0495627_032617 Ga0495627_032617_750_1568 270
156 3300046474 Ga0495605_0091695 Ga0495605_0091695_378_1196 270
157 3300046507 Ga0495606_0007884 Ga0495606_0007884_3680_4498 270
158 3300046558 Ga0495633_0084162 Ga0495633_0084162_416_1234 270
159 3300046615 Ga0495656_0020938 Ga0495656_0020938_1628_2440 270
160 3300046616 Ga0495668_0001171 Ga0495668_0001171_33_845 270
161 3300046664 Ga0495659_0018735 Ga0495659_0018735_1267_2079 270
162 3300047318 Ga0495636_0010476 Ga0495636_0010476_1687_2499 270
163 3300047318 Ga0495636_0013288 Ga0495636_0013288_2442_3254 270
164 3300047447 Ga0495685_005380 Ga0495685_005380_998_1810 270
165 3300047470 Ga0495681_0040435 Ga0495681_0040435_774_1592 270
166 3300048909 Ga0496106_0172408 Ga0496106_0172408_104_940 270
167 3300048927 Ga0496124_0000022 Ga0496124_0000022_392121_392939 270
168 3300049573 Ga0501037_0019933 Ga0501037_0019933_2220_3053 270
169 3300049574 Ga0501038_0112472 Ga0501038_0112472_1232_2065 270
170 3300049575 Ga0501039_0046544 Ga0501039_0046544_1977_2810 270
171 3300049586 Ga0501070_0153711 Ga0501070_0153711_410_1243 270
172 3300049652 Ga0501202_015510 Ga0501202_015510_233_1054 270
173 3300049822 Ga0501035_0042713 Ga0501035_0042713_2472_3305 270
174 3300050491 nmdc:mga00v17_103214_c1 nmdc:mga00v17_103214_c1_558_1391 270
175 3300050491 nmdc:mga00v17_103680_c1 nmdc:mga00v17_103680_c1_173_1006 270
176 3300050491 nmdc:mga00v17_18627_c1 nmdc:mga00v17_18627_c1_1714_2538 270
177 3300050491 nmdc:mga00v17_235695_c1 nmdc:mga00v17_235695_c1_67_900 270
178 3300053161 Ga0500634_0000720 Ga0500634_0000720_7387_8205 270
179 iso_pu_bacteria 2643221695 2644530777 270
180 2162886007 SwRhRL2b_contig_1154499 SwRhRL2b_0241.00001060 271
181 2162886007 SwRhRL2b_contig_1283574 SwRhRL2b_0585.00001170 271
182 3300002773 JGI25152J39213_1000039 JGI25152J39213_100003955 271
183 3300002774 JGI25150J39212_1000125 JGI25150J39212_100012515 271
184 3300003187 JGI25151J46595_10000154 JGI25151J46595_1000015429 271
185 3300003215 JGI25153J46596_10000120 JGI25153J46596_1000012029 271
186 3300005289 Ga0065704_10071672 Ga0065704_100716724 271
187 3300005548 Ga0070665_100369931 Ga0070665_1003699312 271
188 3300009011 Ga0105251_10006562 Ga0105251_100065624 271
189 3300009036 Ga0105244_10022258 Ga0105244_100222583 271
190 3300013104 Ga0157370_10087096 Ga0157370_100870964 271
191 3300013104 Ga0157370_10207829 Ga0157370_102078291 271
192 3300013104 Ga0157370_10331185 Ga0157370_103311851 271
193 3300014497 Ga0182008_10000387 Ga0182008_100003874 271
194 3300025245 Ga0207425_1000074 Ga0207425_100007455 271
195 3300025258 Ga0209129_1000150 Ga0209129_100015055 271
196 3300025292 Ga0209676_1000035 Ga0209676_100003540 271
197 3300025294 Ga0209025_1000048 Ga0209025_100004855 271
198 3300025297 Ga0209758_1000056 Ga0209758_100005655 271
199 3300030731 Ga0316177_1089656 Ga0316177_10896561 271
200 3300030732 Ga0316176_1188359 Ga0316176_11883593 271
201 3300032004 Ga0307414_10506986 Ga0307414_105069861 271
202 3300041413 Ga0439465_0006596 Ga0439465_0006596_2421_3236 271
203 3300042533 Ga0450901_003623 Ga0450901_003623_209_1036 271
204 3300042876 Ga0451577_0005860 Ga0451577_0005860_8460_9371 271
205 3300046460 Ga0495638_0008593 Ga0495638_0008593_2810_3628 271
206 3300046525 Ga0495663_0003664 Ga0495663_0003664_1202_2020 271
207 3300046525 Ga0495663_0019678 Ga0495663_0019678_1032_1859 271
208 3300046558 Ga0495633_0028425 Ga0495633_0028425_1799_2626 271
209 3300046558 Ga0495633_0192538 Ga0495633_0192538_59_877 271
210 3300047470 Ga0495681_0038656 Ga0495681_0038656_1010_1828 271
211 3300048913 Ga0496110_0575423 Ga0496110_0575423_185_1003 271
212 3300048917 Ga0496114_0003078 Ga0496114_0003078_1561_2379 271
213 3300048919 Ga0496116_0022315 Ga0496116_0022315_2153_2971 271
214 3300048920 Ga0496117_0001582 Ga0496117_0001582_8547_9365 271
215 3300048920 Ga0496117_0118681 Ga0496117_0118681_38_856 271
216 3300048921 Ga0496118_0001471 Ga0496118_0001471_4714_5532 271
217 3300048921 Ga0496118_0048533 Ga0496118_0048533_1551_2369 271
218 3300048925 Ga0496122_0032341 Ga0496122_0032341_310_1128 271
219 3300048925 Ga0496122_0215730 Ga0496122_0215730_22_840 271
220 3300048926 Ga0496123_0019096 Ga0496123_0019096_185_1003 271
221 3300048927 Ga0496124_0024725 Ga0496124_0024725_4402_5220 271
222 3300048927 Ga0496124_0026107 Ga0496124_0026107_2742_3560 271
223 3300048927 Ga0496124_0393498 Ga0496124_0393498_105_923 271
224 3300048929 Ga0496126_0109677 Ga0496126_0109677_1455_2273 271
225 3300049568 Ga0501031_0041088 Ga0501031_0041088_1323_2147 271
226 3300049571 Ga0501034_0008200 Ga0501034_0008200_2859_3677 271
227 3300049571 Ga0501034_0019037 Ga0501034_0019037_5444_6259 271
228 3300049571 Ga0501034_0121228 Ga0501034_0121228_284_1099 271
229 3300049573 Ga0501037_0149256 Ga0501037_0149256_768_1616 271
230 3300049574 Ga0501038_0054126 Ga0501038_0054126_72_887 271
231 3300049581 Ga0501047_0068374 Ga0501047_0068374_2330_3145 271
232 3300049589 Ga0501073_0062240 Ga0501073_0062240_1735_2583 271
233 3300049742 Ga0501080_0616291 Ga0501080_0616291_19_834 271
234 3300053128 Ga0500626_093715 Ga0500626_093715_202_1020 271
235 3300053734 Ga0500565_003348 Ga0500565_003348_217_1035 271

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14819

QueF_N

Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term

46

156

0.99

PF14489

QueF

QueF-like protein

216

293

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3uxj-assembly2.cif.gz_C crystal structure of 7-cyano-7-deazaguanine reductase, quef from vibrio cholerae complexed with nadp and preq0 0.9524 18 271
4ghm-assembly1.cif.gz_B crystal structure of the h233a mutant of 7-cyano-7-deazaguanine reductase, quef from vibrio cholerae complexed with preq0 0.9474 18 271
4iqi-assembly1.cif.gz_A crystal structure of 7-cyano-7-deazaguanine reductase, quef from vibrio cholerae o1 biovar el tor complexed with cytosine 0.9432 18 271
3rzp-assembly1.cif.gz_B crystal structure of the c194a mutant of 7-cyano-7-deazaguanine reductase, quef from vibrio cholerae complexed with preq1 0.9432 18 271
3rzp-assembly2.cif.gz_C crystal structure of the c194a mutant of 7-cyano-7-deazaguanine reductase, quef from vibrio cholerae complexed with preq1 0.9387 18 271
ID Description Score Start End Superfamily
3bp1A01 Alpha Beta;2-Layer Sandwich;GTP Cyclohydrolase I, domain 2;GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.9765 18 125 3.30.1130.10
3rzpD02 Alpha Beta;2-Layer Sandwich;GTP Cyclohydrolase I, domain 2;GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.9376 134 271 3.30.1130.10
3rzpD02 Alpha Beta;2-Layer Sandwich;GTP Cyclohydrolase I, domain 2;GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.9307 134 271 3.30.1130.10
3bp1A01 Alpha Beta;2-Layer Sandwich;GTP Cyclohydrolase I, domain 2;GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.8796 18 125 3.30.1130.10
af_Q2G081_22_166_3.30.1130.10 Alpha Beta;2-Layer Sandwich;GTP Cyclohydrolase I, domain 2;GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.8677 148 263 3.30.1130.10
ID Description Score Start End GO Terms
AF-A0A355SSC2-F1-model_v4 deleted 0.9906 41 122
AF-A0A350DBS4-F1-model_v4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.9889 14 98
AF-A0A355YFV3-F1-model_v4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.9846 24 271 GO:0005737
GO:0008616
GO:0033739
AF-A0A090RJH0-F1-model_v4 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.9837 165 259 GO:0008616
GO:0033739
AF-A0A3M8SSH1-F1-model_v4 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) (7-cyano-7-carbaguanine reductase) (NADPH-dependent nitrile oxidoreductase) (PreQ(0) reductase) 0.9827 10 271 GO:0005737
GO:0006400
GO:0008616
GO:0033739

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pLDDT pTM Quality
92.78 0.9 High
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Predicted Structure (AlphaFold2)

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