F346629

General Info

Members Datasets Scaffolds Average Seq Length
233 154 229 346

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8005301065|8005303873
Length 397
Sequence SPHACHLLACWANNSENFVKQASICPGEPATQSLSQQEKLRPKDGHLMGTRTIKIENRLVGEGYPCFVIGEIAQAHDGSLGTAHAYIDALARAGVDAVKFQTHIASAESSPDEKFRINVFPQDGSRYDYWKRMEFSKDQWHSLFEHARRKNLIFLSSPFSFEAVDLLEALGVPAWKVGSGEVTNLPMLKKMSATGKPVLISSGMSSWSDMDEAVATVTDNGGQVGLFQCTTSYPCPPEKIGLNVIGELQTRYQRPVGLSDHSGTIYPSLAAVTLGAKLIEVHAVFSKDCFGPDVGASLTIPALTQLVEGIRYIEAMANSPLDKDAEARELEELRLLFGKSLYTRGDLPKGHRLEAGDIALKKPGTGIPAKNIDRVIGKRLIRDYRADEQLHESDMDD

Samples

Sample ID Description Type Environment
1 2838022645 Rhizobium aethiopicum SEMIA 4074 Isolate Nodule
2 2842198810 Rhizobium aethiopicum SEMIA 470 Isolate Nodule
3 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
10 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
12 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
16 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
17 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
21 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
24 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
25 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
26 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
27 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
30 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
31 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
32 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
33 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
34 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
35 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
36 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
41 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
42 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
43 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
44 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
45 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
46 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
47 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
48 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
49 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
50 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
51 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
52 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
53 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
64 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
65 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
66 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
67 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
68 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
69 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
70 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
89 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
92 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
93 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
96 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
97 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
98 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
99 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
100 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
101 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
102 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
105 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
106 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
107 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
108 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
113 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
126 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
127 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
128 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
129 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
130 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
131 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
132 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
133 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
134 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
135 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
136 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
137 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
138 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
141 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
142 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
143 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
144 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
145 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
146 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
147 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
148 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
149 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
150 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
151 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
152 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
153 8005301065 Rhizobium bangladeshense 1017 Isolate Nodule
154 8057874678 Rhizobium acaciae 1AS12 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 97.42
Metatranscriptomes 0.43
Isolates 2.15

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.58
Nodule 1.72
Rhizoplane 1.72
Rhizosphere 88.84
Stem 0
Stem Tuber 0
Unclassified 5.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10016472 3300003203 Unclassified 3080
2 rootH1_10191444 3300003316 Unclassified 2077
3 rootH1_10191444 3300003323 Bacteria 1915
4 rootH2_10307981 3300003320 Bacteria 1706
5 rootL2_10102669 3300003322 Bacteria 4151
6 rootL2_10133557 3300003322 Bacteria 3951
7 rootL2_10171631 3300003322 Bacteria 1530
8 rootH1_10098450 3300003323 Bacteria 3320
9 rootH1_10198978 3300003323 Bacteria 4535
10 JGI25160J50197_1001870 3300003354 Bacteria 10097
11 JGI25405J52794_10000707 3300003911 Bacteria 5067
12 Ga0058860_10056862 3300004801 Bacteria 4374
13 Ga0065715_10172885 3300005293 Unclassified 1533
14 Ga0070658_10025298 3300005327 Bacteria 4760
15 Ga0070683_100048553 3300005329 Bacteria 3924
16 Ga0070670_100003498 3300005331 Bacteria 13052
17 Ga0070680_100004536 3300005336 Bacteria 10451
18 Ga0068868_100232655 3300005338 Unclassified 1546
19 Ga0070661_100004578 3300005344 Bacteria 9513
20 Ga0070675_100069221 3300005354 Unclassified 2923
21 Ga0070671_100005944 3300005355 Bacteria 9723
22 Ga0070674_100126607 3300005356 Bacteria 1898
23 Ga0070673_100002930 3300005364 Bacteria 10517
24 Ga0070673_100011709 3300005364 Bacteria 5996
25 Ga0070688_100026963 3300005365 Bacteria 3419
26 Ga0070713_100321130 3300005436 Bacteria 1430
27 Ga0070700_100029113 3300005441 Unclassified 3290
28 Ga0070694_100004718 3300005444 Bacteria 8209
29 Ga0070678_100024992 3300005456 Unclassified 4010
30 Ga0070681_10000776 3300005458 Bacteria 26554
31 Ga0070681_10000921 3300005458 Bacteria 24871
32 Ga0068867_100021790 3300005459 Bacteria 4575
33 Ga0070707_100005243 3300005468 Bacteria 12128
34 Ga0070698_100007950 3300005471 Bacteria 11475
35 Ga0070699_100321236 3300005518 Bacteria 1391
36 Ga0070679_100000897 3300005530 Bacteria 25837
37 Ga0070697_100352514 3300005536 Archaea 1271
38 Ga0070686_100114665 3300005544 Bacteria 1841
39 Ga0070704_100004996 3300005549 Bacteria 7705
40 Ga0068855_100695683 3300005563 Unclassified 1088
41 Ga0070664_100143120 3300005564 Bacteria 2107
42 Ga0068857_100021865 3300005577 Bacteria 5629
43 Ga0068857_100251225 3300005577 Bacteria 1621
44 Ga0068852_100235705 3300005616 Bacteria 1747
45 Ga0068852_100393417 3300005616 Unclassified 1362
46 Ga0068864_100022827 3300005618 Bacteria 5248
47 Ga0068870_10024863 3300005840 Bacteria 2967
48 Ga0068858_100304234 3300005842 Unclassified 1522
49 Ga0068860_100055427 3300005843 Bacteria 3769
50 Ga0068862_100288567 3300005844 Unclassified 1506
51 Ga0081455_10010746 3300005937 Bacteria 9256
52 Ga0081539_10000082 3300005985 Bacteria 219763
53 Ga0075364_10006739 3300006051 Bacteria 6772
54 Ga0070712_100037583 3300006175 Bacteria 3302
55 Ga0075428_100019257 3300006844 Bacteria 7551
56 Ga0075428_100052515 3300006844 Bacteria 4467
57 Ga0075431_100003778 3300006847 Bacteria 14720
58 Ga0075431_100033062 3300006847 Bacteria 5330
59 Ga0075431_100147372 3300006847 Bacteria 2425
60 Ga0075433_10003826 3300006852 Bacteria 11648
61 Ga0075433_10063932 3300006852 Bacteria 3225
62 Ga0075434_100058318 3300006871 Bacteria 3837
63 Ga0111539_10130043 3300009094 Bacteria 2949
64 Ga0111539_10136646 3300009094 Bacteria 2871
65 Ga0105247_10035801 3300009101 Bacteria 3027
66 Ga0114129_10021661 3300009147 Bacteria 9122
67 Ga0114129_10374627 3300009147 Unclassified 1881
68 Ga0105243_10024469 3300009148 Bacteria 4606
69 Ga0105242_10037796 3300009176 Bacteria 3880
70 Ga0105237_10040265 3300009545 Unclassified 4713
71 Ga0105239_10007747 3300010375 Bacteria 12296
72 Ga0105239_10060937 3300010375 Bacteria 4142
73 Ga0105239_10252595 3300010375 Unclassified 1980
74 Ga0105246_10092482 3300011119 Bacteria 2183
75 Ga0157370_10021529 3300013104 Bacteria 6425
76 Ga0157370_10191939 3300013104 Bacteria 1896
77 Ga0157378_10006054 3300013297 Bacteria 10595
78 Ga0157378_10254583 3300013297 Bacteria 1682
79 Ga0157372_10100054 3300013307 Unclassified 3308
80 Ga0163163_10003667 3300014325 Bacteria 13065
81 Ga0157380_10184471 3300014326 Bacteria 1836
82 Ga0157376_10104196 3300014969 Unclassified 2485
83 Ga0213873_10000201 3300021358 Bacteria 10876
84 Ga0207426_1000009 3300025302 Bacteria 797229
85 Ga0207645_10033951 3300025907 Bacteria 3278
86 Ga0207643_10053065 3300025908 Unclassified 2303
87 Ga0207707_10001456 3300025912 Bacteria 21872
88 Ga0207707_10018407 3300025912 Bacteria 6090
89 Ga0207671_10037352 3300025914 Bacteria 3602
90 Ga0207660_10007782 3300025917 Bacteria 6937
91 Ga0207649_10013167 3300025920 Unclassified 4613
92 Ga0207652_10010797 3300025921 Bacteria 7356
93 Ga0207646_10003405 3300025922 Bacteria 17960
94 Ga0207669_10076963 3300025937 Bacteria 2120
95 Ga0207689_10002670 3300025942 Bacteria 16488
96 Ga0207661_10056248 3300025944 Bacteria 3158
97 Ga0207661_10078400 3300025944 Bacteria 2719
98 Ga0207679_10023853 3300025945 Bacteria 4188
99 Ga0207703_10260251 3300026035 Unclassified 1568
100 Ga0207708_10008898 3300026075 Bacteria 7432
101 Ga0207708_10009446 3300026075 Bacteria 7222
102 Ga0207648_10001774 3300026089 Bacteria 23627
103 Ga0207674_10010885 3300026116 Bacteria 10248
104 Ga0207674_10278362 3300026116 Bacteria 1621
105 Ga0207675_100038727 3300026118 Bacteria 4449
106 Ga0207675_100040577 3300026118 Unclassified 4347
107 Ga0207675_100424319 3300026118 Bacteria 1314
108 Ga0207683_10086948 3300026121 Bacteria 2780
109 Ga0207428_10000739 3300027907 Bacteria 37468
110 Ga0268265_10267429 3300028380 Unclassified 1523
111 Ga0268264_10041415 3300028381 Bacteria 3810
112 Ga0265338_10032338 3300028800 Bacteria 5107
113 Ga0265338_10136468 3300028800 Unclassified 1928
114 Ga0265325_10004227 3300031241 Bacteria 9111
115 Ga0265327_10000030 3300031251 Bacteria 333531
116 Ga0265327_10139423 3300031251 Unclassified 1134
117 Ga0307414_10000028 3300032004 Bacteria 192108
118 Ga0373960_0061027 3300035121 Unclassified 1144
119 Ga0316582_0111181 3300036647 Bacteria 1824
120 Ga0436364_1027125 3300037853 Unclassified 1920
121 Ga0400490_38521 3300038726 Bacteria 20196
122 Ga0400483_120336 3300039062 Bacteria 7510
123 Ga0436365_1202647 3300039437 Bacteria 5122
124 Ga0436362_0273268 3300039453 Bacteria 60013
125 Ga0439435_0029667 3300042436 Bacteria 1478
126 Ga0451577_0008789 3300042876 Bacteria 9787
127 Ga0453684_0000519 3300044712 Bacteria 147315
128 Ga0453684_0012563 3300044712 Bacteria 13940
129 Ga0453684_0029157 3300044712 Bacteria 7849
130 Ga0466968_0004667 3300044735 Bacteria 5130
131 Ga0495603_0051327 3300046455 Bacteria 2451
132 Ga0495665_0096117 3300046531 Bacteria 1556
133 Ga0495676_0094885 3300047321 Bacteria 2221
134 Ga0496102_0072808 3300048905 Bacteria 3158
135 Ga0496106_0042113 3300048909 Bacteria 3424
136 Ga0496106_0278712 3300048909 Bacteria 1339
137 Ga0496110_0509595 3300048913 Bacteria 1095
138 Ga0501299_001511 3300049522 Unclassified 3014
139 Ga0501033_0047824 3300049570 Bacteria 3180
140 Ga0501034_0000002 3300049571 Bacteria 565510
141 Ga0501034_0004795 3300049571 Bacteria 14954
142 Ga0501034_0092282 3300049571 Bacteria 3025
143 Ga0501036_0380151 3300049572 Unclassified 1179
144 Ga0501038_0009251 3300049574 Bacteria 9041
145 Ga0501038_0034198 3300049574 Bacteria 4472
146 Ga0501038_0178188 3300049574 Unclassified 1717
147 Ga0501038_0202854 3300049574 Unclassified 1590
148 Ga0501039_0019684 3300049575 Bacteria 5176
149 Ga0501039_0050716 3300049575 Unclassified 3211
150 Ga0501040_0074915 3300049576 Bacteria 2339
151 Ga0501041_0018511 3300049577 Bacteria 4149
152 Ga0501041_0022859 3300049577 Bacteria 3746
153 Ga0501041_0039225 3300049577 Bacteria 2874
154 Ga0501041_0051402 3300049577 Bacteria 2512
155 Ga0501042_0197021 3300049578 Bacteria 1453
156 Ga0501043_0190288 3300049579 Bacteria 1596
157 Ga0501043_0229863 3300049579 Bacteria 1433
158 Ga0501046_0020130 3300049580 Bacteria 5524
159 Ga0501046_0037401 3300049580 Bacteria 3900
160 Ga0501046_0043320 3300049580 Bacteria 3584
161 Ga0501046_0047074 3300049580 Bacteria 3420
162 Ga0501047_0026906 3300049581 Bacteria 5538
163 Ga0501047_0033384 3300049581 Unclassified 4967
164 Ga0501048_0016389 3300049582 Bacteria 5461
165 Ga0501048_0035412 3300049582 Unclassified 3594
166 Ga0501048_0039268 3300049582 Bacteria 3397
167 Ga0501048_0098607 3300049582 Unclassified 2061
168 Ga0501048_0210762 3300049582 Bacteria 1378
169 Ga0501069_0074320 3300049585 Bacteria 1907
170 Ga0501070_0158164 3300049586 Bacteria 1869
171 Ga0501071_0026200 3300049587 Bacteria 4090
172 Ga0501071_0079621 3300049587 Bacteria 2396
173 Ga0501071_0147918 3300049587 Bacteria 1751
174 Ga0501072_0036092 3300049588 Bacteria 3874
175 Ga0501072_0041149 3300049588 Unclassified 3629
176 Ga0501072_0066292 3300049588 Unclassified 2848
177 Ga0501072_0095636 3300049588 Bacteria 2361
178 Ga0501075_0001021 3300049591 Bacteria 17927
179 Ga0501075_0007205 3300049591 Bacteria 7705
180 Ga0501075_0020771 3300049591 Bacteria 4780
181 Ga0501075_0057170 3300049591 Bacteria 2937
182 Ga0501075_0090805 3300049591 Unclassified 2317
183 Ga0501076_0031370 3300049592 Bacteria 4143
184 Ga0501076_0053752 3300049592 Bacteria 3192
185 Ga0501076_0085458 3300049592 Unclassified 2535
186 Ga0501077_0108514 3300049593 Bacteria 1758
187 Ga0501077_0149412 3300049593 Bacteria 1482
188 Ga0501077_0179096 3300049593 Bacteria 1347
189 Ga0501227_000186 3300049665 Bacteria 12290
190 Ga0501233_009786 3300049668 Bacteria 1876
191 Ga0501079_0013443 3300049741 Bacteria 6242
192 Ga0501079_0035165 3300049741 Bacteria 3856
193 Ga0501079_0131130 3300049741 Bacteria 1951
194 Ga0501079_0358046 3300049741 Bacteria 1143
195 Ga0501080_0362451 3300049742 Bacteria 1308
196 Ga0501081_0069854 3300049743 Bacteria 2447
197 Ga0501081_0092013 3300049743 Bacteria 2133
198 Ga0501083_0162466 3300049744 Unclassified 1461
199 Ga0501035_0216040 3300049822 Unclassified 1639
200 Ga0501044_0200188 3300049823 Bacteria 1956
201 Ga0501045_0025708 3300049824 Bacteria 4234
202 Ga0501045_0039178 3300049824 Bacteria 3449
203 Ga0501045_0105942 3300049824 Bacteria 2083
204 nmdc:mga07m45_83877_c1 3300050496 Unclassified 1821
205 nmdc:mga05p37_207364_c1 3300050507 Bacteria 2370
206 nmdc:mga05p37_226849_c1 3300050507 Bacteria 2252
207 nmdc:mga05p37_32757_c1 3300050507 Bacteria 6358
208 nmdc:mga09592_9910_c1 3300050508 Bacteria 7750
209 nmdc:mga06r32_225393_c1 3300050510 Bacteria 1863
210 nmdc:mga06r32_71727_c1 3300050510 Bacteria 3352
211 nmdc:mga06r32_75186_c1 3300050510 Bacteria 3277
212 nmdc:mga06r32_9142_c1 3300050510 Bacteria 8932
213 nmdc:mga08y16_113427_c1 3300050511 Bacteria 2821
214 nmdc:mga08y16_120_c1 3300050511 Bacteria 67446
215 nmdc:mga0n895_96980_c1 3300050512 Bacteria 2954
216 nmdc:mga0a205_235779_c1 3300050515 Bacteria 1712
217 nmdc:mga0a205_75700_c1 3300050515 Bacteria 3252
218 Ga0500627_0009420 3300053158 Unclassified 3517
219 Ga0500645_019373 3300053730 Unclassified 2117
220 Ga0501084_0058387 3300054114 Bacteria 3228
221 Ga0501084_0076741 3300054114 Bacteria 2801
222 Ga0501084_0086462 3300054114 Bacteria 2633
223 Ga0501084_0300234 3300054114 Unclassified 1356
224 Ga0501082_0033692 3300060353 Bacteria 4418
225 Ga0501082_0043491 3300060353 Bacteria 3873
226 Ga0501082_0055216 3300060353 Bacteria 3422
227 Ga0530510_0007181 3300061734 Bacteria 7753
228 Ga0530510_0037847 3300061734 Bacteria 3480
229 Ga0530510_0095639 3300061734 Bacteria 2170

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300025908 Ga0207643_10053065 Ga0207643_100530652 284
2 3300049572 Ga0501036_0380151 Ga0501036_0380151_250_1158 301
3 3300048913 Ga0496110_0509595 Ga0496110_0509595_124_1077 315
4 3300013104 Ga0157370_10021529 Ga0157370_100215294 317
5 3300005327 Ga0070658_10025298 Ga0070658_100252982 319
6 3300005577 Ga0068857_100251225 Ga0068857_1002512251 325
7 3300026116 Ga0207674_10278362 Ga0207674_102783621 325
8 3300050496 nmdc:mga07m45_83877_c1 nmdc:mga07m45_83877_c1_550_1545 326
9 3300011119 Ga0105246_10092482 Ga0105246_100924822 327
10 3300003322 rootL2_10133557 rootL2_101335575 328
11 3300003322 rootL2_10171631 rootL2_101716312 328
12 3300003323 rootH1_10198978 rootH1_101989782 328
13 3300031251 Ga0265327_10000030 Ga0265327_1000003034 328
14 3300031251 Ga0265327_10139423 Ga0265327_101394231 328
15 3300042436 Ga0439435_0029667 Ga0439435_0029667_472_1461 328
16 3300003316 rootH1_10191444 rootH1_101914442 329
17 3300003320 rootH2_10307981 rootH2_103079811 329
18 3300003322 rootL2_10102669 rootL2_101026692 329
19 3300003323 rootH1_10098450 rootH1_100984502 329
20 3300003354 JGI25160J50197_1001870 JGI25160J50197_100187010 329
21 3300005616 Ga0068852_100393417 Ga0068852_1003934172 329
22 3300009545 Ga0105237_10040265 Ga0105237_100402652 329
23 3300010375 Ga0105239_10007747 Ga0105239_100077472 329
24 3300025302 Ga0207426_1000009 Ga0207426_1000009310 329
25 3300025914 Ga0207671_10037352 Ga0207671_100373522 329
26 3300032004 Ga0307414_10000028 Ga0307414_10000028130 329
27 3300042876 Ga0451577_0008789 Ga0451577_0008789_6582_7580 329
28 3300044712 Ga0453684_0012563 Ga0453684_0012563_7386_8384 329
29 3300049571 Ga0501034_0000002 Ga0501034_0000002_339062_340066 329
30 3300049581 Ga0501047_0026906 Ga0501047_0026906_245_1246 329
31 3300049823 Ga0501044_0200188 Ga0501044_0200188_779_1780 329
32 iso_pu_bacteria 2965320100 2965322005 329
33 3300009101 Ga0105247_10035801 Ga0105247_100358012 330
34 3300010375 Ga0105239_10252595 Ga0105239_102525952 330
35 3300048905 Ga0496102_0072808 Ga0496102_0072808_72_1070 330
36 3300048909 Ga0496106_0278712 Ga0496106_0278712_285_1283 330
37 3300050507 nmdc:mga05p37_226849_c1 nmdc:mga05p37_226849_c1_891_1883 330
38 iso_pu_bacteria 2838022645 2838028153 330
39 iso_pu_bacteria 2842198810 2842205243 330
40 iso_pu_bacteria 8057874678 8057876080 330
41 3300005338 Ga0068868_100232655 Ga0068868_1002326552 331
42 3300005563 Ga0068855_100695683 Ga0068855_1006956831 331
43 3300013297 Ga0157378_10254583 Ga0157378_102545831 331
44 3300036647 Ga0316582_0111181 Ga0316582_0111181_305_1342 332
45 3300037853 Ga0436364_1027125 Ga0436364_1027125_820_1848 332
46 3300038726 Ga0400490_38521 Ga0400490_38521_12366_13397 332
47 3300039062 Ga0400483_120336 Ga0400483_120336_1661_2695 332
48 3300049741 Ga0501079_0131130 Ga0501079_0131130_854_1879 332
49 3300053158 Ga0500627_0009420 Ga0500627_0009420_399_1409 332
50 3300053730 Ga0500645_019373 Ga0500645_019373_804_1841 332
51 3300005293 Ga0065715_10172885 Ga0065715_101728851 333
52 3300025937 Ga0207669_10076963 Ga0207669_100769632 333
53 3300035121 Ga0373960_0061027 Ga0373960_0061027_79_1128 333
54 3300046531 Ga0495665_0096117 Ga0495665_0096117_174_1271 333
55 3300049570 Ga0501033_0047824 Ga0501033_0047824_465_1505 333
56 3300049571 Ga0501034_0092282 Ga0501034_0092282_530_1570 333
57 3300049574 Ga0501038_0034198 Ga0501038_0034198_794_1840 333
58 3300049574 Ga0501038_0178188 Ga0501038_0178188_149_1198 333
59 3300049577 Ga0501041_0018511 Ga0501041_0018511_1214_2260 333
60 3300049577 Ga0501041_0022859 Ga0501041_0022859_2225_3274 333
61 3300049579 Ga0501043_0229863 Ga0501043_0229863_89_1138 333
62 3300049580 Ga0501046_0020130 Ga0501046_0020130_397_1437 333
63 3300049580 Ga0501046_0043320 Ga0501046_0043320_1588_2634 333
64 3300049581 Ga0501047_0033384 Ga0501047_0033384_38_1078 333
65 3300049582 Ga0501048_0035412 Ga0501048_0035412_1440_2489 333
66 3300049582 Ga0501048_0098607 Ga0501048_0098607_50_1096 333
67 3300049585 Ga0501069_0074320 Ga0501069_0074320_28_1074 333
68 3300049587 Ga0501071_0026200 Ga0501071_0026200_2094_3140 333
69 3300049588 Ga0501072_0036092 Ga0501072_0036092_2528_3574 333
70 3300049591 Ga0501075_0007205 Ga0501075_0007205_5648_6694 333
71 3300049591 Ga0501075_0057170 Ga0501075_0057170_709_1791 333
72 3300049591 Ga0501075_0090805 Ga0501075_0090805_324_1373 333
73 3300049592 Ga0501076_0085458 Ga0501076_0085458_75_1124 333
74 3300049593 Ga0501077_0108514 Ga0501077_0108514_46_1095 333
75 3300049741 Ga0501079_0035165 Ga0501079_0035165_2725_3771 333
76 3300049741 Ga0501079_0358046 Ga0501079_0358046_44_1093 333
77 3300049742 Ga0501080_0362451 Ga0501080_0362451_73_1122 333
78 3300049743 Ga0501081_0069854 Ga0501081_0069854_1371_2417 333
79 3300050507 nmdc:mga05p37_207364_c1 nmdc:mga05p37_207364_c1_1188_2225 333
80 3300054114 Ga0501084_0058387 Ga0501084_0058387_969_2015 333
81 3300054114 Ga0501084_0076741 Ga0501084_0076741_1507_2589 333
82 3300060353 Ga0501082_0033692 Ga0501082_0033692_611_1657 333
83 3300005444 Ga0070694_100004718 Ga0070694_1000047183 334
84 3300005471 Ga0070698_100007950 Ga0070698_10000795010 334
85 3300005518 Ga0070699_100321236 Ga0070699_1003212362 334
86 3300005549 Ga0070704_100004996 Ga0070704_1000049963 334
87 3300006871 Ga0075434_100058318 Ga0075434_1000583184 334
88 3300028800 Ga0265338_10032338 Ga0265338_100323382 334
89 3300031241 Ga0265325_10004227 Ga0265325_100042274 334
90 3300044712 Ga0453684_0000519 Ga0453684_0000519_27364_28377 334
91 3300046455 Ga0495603_0051327 Ga0495603_0051327_473_1522 334
92 3300047321 Ga0495676_0094885 Ga0495676_0094885_249_1298 334
93 3300049522 Ga0501299_001511 Ga0501299_001511_1757_2815 334
94 3300049578 Ga0501042_0197021 Ga0501042_0197021_167_1183 334
95 3300049588 Ga0501072_0066292 Ga0501072_0066292_592_1608 334
96 3300049665 Ga0501227_000186 Ga0501227_000186_5847_6905 334
97 3300049668 Ga0501233_009786 Ga0501233_009786_160_1218 334
98 3300050512 nmdc:mga0n895_96980_c1 nmdc:mga0n895_96980_c1_123_1172 334
99 3300050515 nmdc:mga0a205_235779_c1 nmdc:mga0a205_235779_c1_87_1136 334
100 3300061734 Ga0530510_0007181 Ga0530510_0007181_2700_3716 334
101 3300009094 Ga0111539_10130043 Ga0111539_101300432 335
102 3300021358 Ga0213873_10000201 Ga0213873_100002016 335
103 3300026118 Ga0207675_100424319 Ga0207675_1004243192 335
104 3300027907 Ga0207428_10000739 Ga0207428_1000073925 335
105 3300039437 Ga0436365_1202647 Ga0436365_1202647_164_1201 335
106 3300039453 Ga0436362_0273268 Ga0436362_0273268_6920_7957 335
107 3300049571 Ga0501034_0004795 Ga0501034_0004795_12730_13785 335
108 3300050510 nmdc:mga06r32_9142_c1 nmdc:mga06r32_9142_c1_833_1852 335
109 3300050511 nmdc:mga08y16_120_c1 nmdc:mga08y16_120_c1_35636_36682 335
110 3300003911 JGI25405J52794_10000707 JGI25405J52794_100007075 336
111 3300005329 Ga0070683_100048553 Ga0070683_1000485534 336
112 3300005336 Ga0070680_100004536 Ga0070680_1000045364 336
113 3300005344 Ga0070661_100004578 Ga0070661_1000045789 336
114 3300005458 Ga0070681_10000776 Ga0070681_1000077610 336
115 3300005530 Ga0070679_100000897 Ga0070679_1000008979 336
116 3300005577 Ga0068857_100021865 Ga0068857_1000218653 336
117 3300005937 Ga0081455_10010746 Ga0081455_100107464 336
118 3300006844 Ga0075428_100019257 Ga0075428_1000192573 336
119 3300006844 Ga0075428_100052515 Ga0075428_1000525154 336
120 3300006847 Ga0075431_100033062 Ga0075431_1000330624 336
121 3300006852 Ga0075433_10003826 Ga0075433_100038266 336
122 3300006852 Ga0075433_10063932 Ga0075433_100639323 336
123 3300009094 Ga0111539_10136646 Ga0111539_101366462 336
124 3300009147 Ga0114129_10021661 Ga0114129_100216615 336
125 3300013104 Ga0157370_10191939 Ga0157370_101919392 336
126 3300013297 Ga0157378_10006054 Ga0157378_100060547 336
127 3300013307 Ga0157372_10100054 Ga0157372_101000541 336
128 3300025912 Ga0207707_10001456 Ga0207707_1000145610 336
129 3300025917 Ga0207660_10007782 Ga0207660_100077826 336
130 3300025920 Ga0207649_10013167 Ga0207649_100131672 336
131 3300025921 Ga0207652_10010797 Ga0207652_100107976 336
132 3300025944 Ga0207661_10056248 Ga0207661_100562482 336
133 3300025944 Ga0207661_10078400 Ga0207661_100784003 336
134 3300026116 Ga0207674_10010885 Ga0207674_100108854 336
135 3300044712 Ga0453684_0029157 Ga0453684_0029157_2045_3070 336
136 3300049575 Ga0501039_0050716 Ga0501039_0050716_1684_2727 336
137 3300049588 Ga0501072_0041149 Ga0501072_0041149_1967_3010 336
138 3300049592 Ga0501076_0053752 Ga0501076_0053752_1195_2238 336
139 3300049824 Ga0501045_0039178 Ga0501045_0039178_2231_3274 336
140 3300050507 nmdc:mga05p37_32757_c1 nmdc:mga05p37_32757_c1_5293_6318 336
141 3300050508 nmdc:mga09592_9910_c1 nmdc:mga09592_9910_c1_2843_3868 336
142 3300050510 nmdc:mga06r32_71727_c1 nmdc:mga06r32_71727_c1_1844_2869 336
143 3300050510 nmdc:mga06r32_75186_c1 nmdc:mga06r32_75186_c1_788_1831 336
144 3300050511 nmdc:mga08y16_113427_c1 nmdc:mga08y16_113427_c1_449_1474 336
145 3300050515 nmdc:mga0a205_75700_c1 nmdc:mga0a205_75700_c1_875_1906 336
146 3300054114 Ga0501084_0086462 Ga0501084_0086462_471_1514 336
147 3300061734 Ga0530510_0095639 Ga0530510_0095639_644_1687 336
148 3300006847 Ga0075431_100147372 Ga0075431_1001473722 337
149 3300028800 Ga0265338_10136468 Ga0265338_101364682 337
150 3300049574 Ga0501038_0009251 Ga0501038_0009251_357_1421 337
151 3300049575 Ga0501039_0019684 Ga0501039_0019684_1616_2680 337
152 3300049576 Ga0501040_0074915 Ga0501040_0074915_277_1341 337
153 3300049577 Ga0501041_0051402 Ga0501041_0051402_1034_2098 337
154 3300049580 Ga0501046_0037401 Ga0501046_0037401_1588_2652 337
155 3300049582 Ga0501048_0016389 Ga0501048_0016389_1700_2764 337
156 3300049591 Ga0501075_0020771 Ga0501075_0020771_3056_4120 337
157 3300049824 Ga0501045_0025708 Ga0501045_0025708_2269_3333 337
158 3300050510 nmdc:mga06r32_225393_c1 nmdc:mga06r32_225393_c1_565_1614 337
159 3300060353 Ga0501082_0055216 Ga0501082_0055216_1274_2338 337
160 3300061734 Ga0530510_0037847 Ga0530510_0037847_2034_3098 337
161 3300005331 Ga0070670_100003498 Ga0070670_1000034985 338
162 3300005354 Ga0070675_100069221 Ga0070675_1000692212 338
163 3300005355 Ga0070671_100005944 Ga0070671_1000059444 338
164 3300005356 Ga0070674_100126607 Ga0070674_1001266072 338
165 3300005364 Ga0070673_100002930 Ga0070673_1000029302 338
166 3300005364 Ga0070673_100011709 Ga0070673_1000117094 338
167 3300005441 Ga0070700_100029113 Ga0070700_1000291132 338
168 3300005456 Ga0070678_100024992 Ga0070678_1000249924 338
169 3300005458 Ga0070681_10000921 Ga0070681_100009215 338
170 3300005459 Ga0068867_100021790 Ga0068867_1000217903 338
171 3300005544 Ga0070686_100114665 Ga0070686_1001146652 338
172 3300005564 Ga0070664_100143120 Ga0070664_1001431202 338
173 3300005616 Ga0068852_100235705 Ga0068852_1002357052 338
174 3300005618 Ga0068864_100022827 Ga0068864_1000228272 338
175 3300005840 Ga0068870_10024863 Ga0068870_100248632 338
176 3300005842 Ga0068858_100304234 Ga0068858_1003042341 338
177 3300006051 Ga0075364_10006739 Ga0075364_100067394 338
178 3300009148 Ga0105243_10024469 Ga0105243_100244692 338
179 3300009176 Ga0105242_10037796 Ga0105242_100377962 338
180 3300014325 Ga0163163_10003667 Ga0163163_100036675 338
181 3300014326 Ga0157380_10184471 Ga0157380_101844712 338
182 3300014969 Ga0157376_10104196 Ga0157376_101041963 338
183 3300025907 Ga0207645_10033951 Ga0207645_100339512 338
184 3300025912 Ga0207707_10018407 Ga0207707_100184074 338
185 3300025942 Ga0207689_10002670 Ga0207689_100026706 338
186 3300025945 Ga0207679_10023853 Ga0207679_100238534 338
187 3300026035 Ga0207703_10260251 Ga0207703_102602512 338
188 3300026075 Ga0207708_10008898 Ga0207708_100088988 338
189 3300026089 Ga0207648_10001774 Ga0207648_100017743 338
190 3300026118 Ga0207675_100038727 Ga0207675_1000387272 338
191 3300026121 Ga0207683_10086948 Ga0207683_100869482 338
192 3300044735 Ga0466968_0004667 Ga0466968_0004667_1347_2381 338
193 3300049579 Ga0501043_0190288 Ga0501043_0190288_297_1358 338
194 3300049582 Ga0501048_0210762 Ga0501048_0210762_24_1082 338
195 3300049587 Ga0501071_0079621 Ga0501071_0079621_218_1276 338
196 3300049593 Ga0501077_0179096 Ga0501077_0179096_284_1327 338
197 3300049744 Ga0501083_0162466 Ga0501083_0162466_278_1327 338
198 3300004801 Ga0058860_10056862 Ga0058860_100568622 339
199 3300005365 Ga0070688_100026963 Ga0070688_1000269631 339
200 3300005844 Ga0068862_100288567 Ga0068862_1002885671 339
201 3300006847 Ga0075431_100003778 Ga0075431_1000037786 339
202 3300009147 Ga0114129_10374627 Ga0114129_103746272 339
203 3300010375 Ga0105239_10060937 Ga0105239_100609373 339
204 3300026075 Ga0207708_10009446 Ga0207708_100094463 339
205 3300026118 Ga0207675_100040577 Ga0207675_1000405771 339
206 3300028380 Ga0268265_10267429 Ga0268265_102674292 339
207 3300005436 Ga0070713_100321130 Ga0070713_1003211301 340
208 3300006175 Ga0070712_100037583 Ga0070712_1000375833 340
209 3300005468 Ga0070707_100005243 Ga0070707_1000052434 341
210 3300005536 Ga0070697_100352514 Ga0070697_1003525141 341
211 3300005843 Ga0068860_100055427 Ga0068860_1000554273 341
212 3300025922 Ga0207646_10003405 Ga0207646_1000340510 341
213 3300028381 Ga0268264_10041415 Ga0268264_100414153 341
214 3300048909 Ga0496106_0042113 Ga0496106_0042113_499_1599 341
215 3300049574 Ga0501038_0202854 Ga0501038_0202854_495_1568 341
216 3300049577 Ga0501041_0039225 Ga0501041_0039225_1373_2446 341
217 3300049580 Ga0501046_0047074 Ga0501046_0047074_737_1810 341
218 3300049582 Ga0501048_0039268 Ga0501048_0039268_1723_2796 341
219 3300049586 Ga0501070_0158164 Ga0501070_0158164_511_1584 341
220 3300049587 Ga0501071_0147918 Ga0501071_0147918_440_1513 341
221 3300049588 Ga0501072_0095636 Ga0501072_0095636_606_1679 341
222 3300049591 Ga0501075_0001021 Ga0501075_0001021_16817_17890 341
223 3300049592 Ga0501076_0031370 Ga0501076_0031370_2862_3935 341
224 3300049593 Ga0501077_0149412 Ga0501077_0149412_188_1261 341
225 3300049741 Ga0501079_0013443 Ga0501079_0013443_2981_4054 341
226 3300049743 Ga0501081_0092013 Ga0501081_0092013_566_1639 341
227 3300049822 Ga0501035_0216040 Ga0501035_0216040_545_1618 341
228 3300049824 Ga0501045_0105942 Ga0501045_0105942_253_1326 341
229 3300054114 Ga0501084_0300234 Ga0501084_0300234_209_1282 341
230 3300060353 Ga0501082_0043491 Ga0501082_0043491_606_1679 341
231 3300003203 JGI25406J46586_10016472 JGI25406J46586_100164723 342
232 3300005985 Ga0081539_10000082 Ga0081539_10000082128 342
233 iso_pu_bacteria 8005301065 8005303873 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03102

NeuB

NeuB family

86

321

0.96

PF08666

SAF

SAF domain

338

395

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wvo-assembly1.cif.gz_A solution structure of rsgi ruh-029, an antifreeze protein like domain in human n-acetylneuraminic acid phosphate synthase gene. 0.9609 284 342
4ur4-assembly1.cif.gz_A structure of the type iii fish antifreeze protein from zoarces viviparus zvafp13 0.9559 284 341
5xqr-assembly1.cif.gz_B crystal structure of notched-fin eelpout type iii antifreeze protein a20v mutant (nfe6, afp), c2221 form 0.9508 285 342
1b7j-assembly1.cif.gz_A type iii antifreeze protein isoform hplc 12 v20a 0.9493 284 341
1gzi-assembly1.cif.gz_A crystal structure of type iii antifreeze protein from ocean pout, at 1.8 angstrom resolution 0.949 284 341
ID Description Score Start End Superfamily
1wvoA00 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.9609 284 342 3.90.1210.10
af_Q9VG74_312_372_3.90.1210.10 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.9534 285 342 3.90.1210.10
af_Q99J77_9_276_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9527 11 266 3.20.20.70
5xqrB00 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.9508 285 342 3.90.1210.10
af_A0A0G2L5X9_296_357_3.90.1210.10 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.949 284 342 3.90.1210.10
ID Description Score Start End GO Terms
AF-A0A836X375-F1-model_v4 AFP-like domain-containing protein 0.9966 285 342
AF-A0A3A8ZZB3-F1-model_v4 N-acetylneuraminate synthase 0.9851 11 341 GO:0016051
GO:0047444
GO:0070085
AF-A0A1R4HA38-F1-model_v4 AFP-like domain-containing protein 0.9781 285 342
AF-A0A2E7TT85-F1-model_v4 N-acetylneuraminate synthase 0.9746 11 342 GO:0016051
GO:0047444
GO:0070085
AF-A0A0R0LH80-F1-model_v4 N,N'-diacetyllegionaminic acid synthase (EC 2.5.1.101) 0.9737 12 342 GO:0016051
GO:0047444
GO:0070085

Feature Viewer

pLDDT pTM Quality
93.73 0.86 High
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Predicted Structure (AlphaFold2)

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