F345778

General Info

Members Datasets Scaffolds Average Seq Length
233 149 230 309

Family's Representative Sequence

Representative Sequence 3300005336|Ga0070680_100001013|Ga0070680_10000101315
Length 321
Sequence MNWLQIQNVISMLGGLLVLAGVGGGAWLLANEFRLRAIRRGRMQGAGGGQVEIARASRRNRGGGFIGSQLLGTVRVLGQQSAVRDPAKLSVLRSRLMQAGFYNREAPVIYLGLRAAALALATLGVMLLLPVLVGGKAGMMGICAAALMAGAAILGPDQVLKVRRSKREREYSEGFPDLLDLLVASVEAGLSLDAAVTRVTEELVRRYPTLTVHLRFLVLELRAGKSRKDAWSAFADRLGIDDARQLATMLRQAEEMGTSLGETLTVFSQDMRSKRMLRAEEKALALSAKLTVPLILFIFPCLLGALMLPAVARLAHVFGKH

Samples

Sample ID Description Type Environment
1 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
2 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
3 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
37 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
51 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
52 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
91 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
92 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
93 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
94 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
95 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
96 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
97 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
98 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
99 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
100 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
103 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
104 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
105 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
106 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
107 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
108 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
109 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
110 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
111 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
112 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
113 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
114 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
115 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
116 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
119 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
120 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
121 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
122 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
126 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
127 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
128 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
134 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
135 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
136 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
137 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
138 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
139 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
140 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
141 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
142 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
143 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
144 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
145 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
146 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
147 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
148 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
149 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.71
Metatranscriptomes 0
Isolates 1.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.16
Nodule 0.43
Rhizoplane 3
Rhizosphere 78.11
Stem 0
Stem Tuber 0
Unclassified 7.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055530_10000045 3300003791 Bacteria 109202
2 Ga0055531_10001771 3300003794 Bacteria 15367
3 Ga0065165_1000649 3300005262 Bacteria 50230
4 Ga0070658_10051627 3300005327 Bacteria 3332
5 Ga0070670_100000007 3300005331 Bacteria 318672
6 Ga0070670_100079125 3300005331 Bacteria 2825
7 Ga0070670_100288308 3300005331 Bacteria 1434
8 Ga0070666_10033693 3300005335 Bacteria 3391
9 Ga0070666_10331857 3300005335 Bacteria 1086
10 Ga0070680_100001013 3300005336 Bacteria 20035
11 Ga0070680_100005593 3300005336 Bacteria 9516
12 Ga0070660_100019293 3300005339 Bacteria 4993
13 Ga0070660_100053830 3300005339 Bacteria 3105
14 Ga0070661_100453111 3300005344 Bacteria 1021
15 Ga0070668_100000698 3300005347 Bacteria 22911
16 Ga0070668_100002941 3300005347 Bacteria 12595
17 Ga0070669_100054059 3300005353 Bacteria 2940
18 Ga0070671_100001734 3300005355 Bacteria 16560
19 Ga0070671_100284172 3300005355 Bacteria 1407
20 Ga0070659_100006805 3300005366 Bacteria 8275
21 Ga0070659_100009207 3300005366 Bacteria 7247
22 Ga0070667_100004165 3300005367 Bacteria 12225
23 Ga0070667_100007220 3300005367 Bacteria 9232
24 Ga0070681_10009874 3300005458 Bacteria 9404
25 Ga0070681_10099215 3300005458 Bacteria 2858
26 Ga0070679_100014598 3300005530 Bacteria 7547
27 Ga0068853_100011939 3300005539 Bacteria 7064
28 Ga0068853_100152342 3300005539 Bacteria 2082
29 Ga0070665_100000494 3300005548 Bacteria 56412
30 Ga0070665_100001645 3300005548 Bacteria 25760
31 Ga0070665_100018885 3300005548 Bacteria 6914
32 Ga0068855_100012603 3300005563 Bacteria 10202
33 Ga0068855_100030480 3300005563 Bacteria 6451
34 Ga0068855_100060412 3300005563 Bacteria 4433
35 Ga0068855_100093170 3300005563 Bacteria 3474
36 Ga0068852_100015413 3300005616 Bacteria 5928
37 Ga0068859_100007360 3300005617 Bacteria 11167
38 Ga0068864_100000095 3300005618 Bacteria 91554
39 Ga0068864_100000265 3300005618 Bacteria 46817
40 Ga0068864_100022033 3300005618 Bacteria 5339
41 Ga0068861_100086764 3300005719 Bacteria 2461
42 Ga0068863_100000566 3300005841 Bacteria 37590
43 Ga0068863_100001274 3300005841 Bacteria 25120
44 Ga0068863_100016489 3300005841 Bacteria 7087
45 Ga0068858_100000408 3300005842 Bacteria 44660
46 Ga0068858_100004569 3300005842 Bacteria 13554
47 Ga0068860_100000204 3300005843 Bacteria 93995
48 Ga0068862_100001099 3300005844 Bacteria 25679
49 Ga0070717_10021462 3300006028 Bacteria 5088
50 Ga0075364_10002070 3300006051 Bacteria 11202
51 Ga0075367_10005244 3300006178 Bacteria 6407
52 Ga0097621_100187221 3300006237 Bacteria 1791
53 Ga0097620_100007360 3300006931 Bacteria 11167
54 Ga0079104_1009027 3300006946 Bacteria 3420
55 Ga0105250_10083063 3300009092 Bacteria 1299
56 Ga0105240_10008112 3300009093 Bacteria 15078
57 Ga0105240_10024806 3300009093 Bacteria 7896
58 Ga0105240_10032437 3300009093 Bacteria 6762
59 Ga0105240_10040822 3300009093 Bacteria 5929
60 Ga0105240_10054934 3300009093 Bacteria 4988
61 Ga0105240_10362745 3300009093 Bacteria 1640
62 Ga0105245_10132610 3300009098 Bacteria 2338
63 Ga0105241_10097173 3300009174 Bacteria 2334
64 Ga0105242_10051361 3300009176 Bacteria 3360
65 Ga0105248_10002867 3300009177 Bacteria 19138
66 Ga0105248_10019280 3300009177 Bacteria 7549
67 Ga0105248_10021534 3300009177 Bacteria 7140
68 Ga0105248_10061443 3300009177 Bacteria 4218
69 Ga0105248_10878274 3300009177 Bacteria 1012
70 Ga0105238_10018054 3300009551 Bacteria 7170
71 Ga0105238_10036353 3300009551 Bacteria 5006
72 Ga0105249_10040284 3300009553 Bacteria 4243
73 Ga0157370_10069818 3300013104 Bacteria 3317
74 Ga0163162_10050032 3300013306 Bacteria 4190
75 Ga0163162_10329831 3300013306 Bacteria 1658
76 Ga0157372_10050875 3300013307 Bacteria 4608
77 Ga0157375_10023784 3300013308 Bacteria 5661
78 Ga0163163_10154626 3300014325 Bacteria 2338
79 Ga0163163_10406811 3300014325 Bacteria 1419
80 Ga0157379_10000951 3300014968 Bacteria 23496
81 Ga0157379_10021413 3300014968 Bacteria 5722
82 Ga0213876_10008752 3300021384 Bacteria 5468
83 Ga0213876_10051687 3300021384 Bacteria 2172
84 Ga0209026_1001832 3300025250 Bacteria 8716
85 Ga0209758_1005599 3300025297 Bacteria 9552
86 Ga0209050_1000121 3300025298 Bacteria 196019
87 Ga0209257_1000125 3300025304 Bacteria 218126
88 Ga0209257_1000706 3300025304 Bacteria 51722
89 Ga0207696_1048098 3300025711 Bacteria 1227
90 Ga0207680_10001625 3300025903 Bacteria 10630
91 Ga0207680_10273220 3300025903 Bacteria 1173
92 Ga0207705_10000478 3300025909 Bacteria 34357
93 Ga0207705_10100976 3300025909 Bacteria 2122
94 Ga0207705_10159045 3300025909 Bacteria 1696
95 Ga0207707_10015165 3300025912 Bacteria 6709
96 Ga0207707_10051962 3300025912 Bacteria 3569
97 Ga0207707_10119603 3300025912 Bacteria 2302
98 Ga0207695_10000766 3300025913 Bacteria 61318
99 Ga0207695_10001045 3300025913 Bacteria 48612
100 Ga0207695_10044584 3300025913 Bacteria 4715
101 Ga0207695_10047544 3300025913 Bacteria 4539
102 Ga0207695_10136535 3300025913 Bacteria 2405
103 Ga0207657_10004900 3300025919 Bacteria 14076
104 Ga0207657_10048279 3300025919 Bacteria 3717
105 Ga0207657_10083514 3300025919 Bacteria 2679
106 Ga0207652_10016937 3300025921 Bacteria 5960
107 Ga0207681_10037682 3300025923 Bacteria 3197
108 Ga0207694_10015496 3300025924 Bacteria 5748
109 Ga0207694_10038726 3300025924 Bacteria 3666
110 Ga0207650_10000030 3300025925 Bacteria 235824
111 Ga0207650_10020456 3300025925 Bacteria 4668
112 Ga0207650_10028050 3300025925 Bacteria 4035
113 Ga0207687_10183991 3300025927 Bacteria 1620
114 Ga0207644_10000370 3300025931 Bacteria 29393
115 Ga0207644_10051278 3300025931 Bacteria 2961
116 Ga0207690_10000158 3300025932 Bacteria 53051
117 Ga0207690_10147014 3300025932 Bacteria 1743
118 Ga0207706_10066892 3300025933 Bacteria 3162
119 Ga0207686_10035251 3300025934 Bacteria 3002
120 Ga0207711_10001411 3300025941 Bacteria 22498
121 Ga0207711_10005900 3300025941 Bacteria 10345
122 Ga0207711_10011442 3300025941 Bacteria 7377
123 Ga0207689_10178057 3300025942 Bacteria 1754
124 Ga0207667_10034805 3300025949 Bacteria 5406
125 Ga0207667_10111961 3300025949 Bacteria 2815
126 Ga0207712_10028878 3300025961 Bacteria 3714
127 Ga0207668_10000502 3300025972 Bacteria 24518
128 Ga0207668_10005301 3300025972 Bacteria 7588
129 Ga0207658_10000810 3300025986 Bacteria 26172
130 Ga0207703_10000171 3300026035 Bacteria 75791
131 Ga0207703_10004610 3300026035 Bacteria 11279
132 Ga0207703_10070851 3300026035 Bacteria 2878
133 Ga0207703_10123084 3300026035 Bacteria 2229
134 Ga0207703_10232416 3300026035 Bacteria 1654
135 Ga0207639_10041169 3300026041 Bacteria 3455
136 Ga0207639_10042145 3300026041 Bacteria 3420
137 Ga0207639_10158390 3300026041 Bacteria 1905
138 Ga0207702_10384825 3300026078 Bacteria 1350
139 Ga0207641_10000007 3300026088 Bacteria 441443
140 Ga0207641_10001223 3300026088 Bacteria 25730
141 Ga0207641_10013531 3300026088 Bacteria 6692
142 Ga0207641_10600625 3300026088 Bacteria 1077
143 Ga0207676_10000095 3300026095 Bacteria 80405
144 Ga0207676_10000268 3300026095 Bacteria 45354
145 Ga0207676_10022954 3300026095 Bacteria 4594
146 Ga0207675_100109208 3300026118 Bacteria 2610
147 Ga0207683_10392963 3300026121 Bacteria 1275
148 Ga0207698_10034095 3300026142 Bacteria 3707
149 Ga0209981_1000226 3300027378 Bacteria 7209
150 Ga0209999_1000702 3300027543 Bacteria 5414
151 Ga0268266_10000003 3300028379 Bacteria 1701703
152 Ga0268266_10005851 3300028379 Bacteria 11379
153 Ga0268266_10007907 3300028379 Bacteria 9521
154 Ga0268266_10030914 3300028379 Bacteria 4547
155 Ga0268265_10007114 3300028380 Bacteria 7553
156 Ga0268264_10000125 3300028381 Bacteria 186416
157 Ga0268264_10047389 3300028381 Bacteria 3573
158 Ga0307517_10042853 3300028786 Bacteria 4839
159 Ga0307517_10084725 3300028786 Bacteria 2664
160 Ga0265327_10026772 3300031251 Bacteria 3333
161 Ga0307513_10000698 3300031456 Bacteria 48179
162 Ga0307513_10008733 3300031456 Bacteria 12907
163 Ga0307409_100412267 3300031995 Bacteria 1294
164 Ga0307411_10116772 3300032005 Bacteria 1922
165 Ga0373936_0007512 3300035113 Bacteria 4099
166 Ga0373935_0297926 3300035692 Bacteria 1139
167 Ga0395899_0002424 3300037312 Bacteria 15159
168 Ga0395899_0155577 3300037312 Bacteria 1618
169 Ga0395900_0000567 3300037418 Bacteria 51172
170 Ga0395900_0034699 3300037418 Bacteria 5196
171 Ga0395898_0016667 3300037466 Bacteria 7510
172 Ga0395905_0007470 3300037471 Bacteria 10870
173 Ga0395905_0176163 3300037471 Bacteria 2008
174 Ga0395901_0000032 3300038443 Bacteria 235172
175 Ga0395901_0043910 3300038443 Bacteria 4636
176 Ga0436365_0198822 3300039437 Bacteria 12072
177 Ga0436365_1071875 3300039437 Bacteria 1297
178 Ga0436365_1869343 3300039437 Bacteria 1096
179 Ga0439431_0029262 3300041997 Bacteria 1360
180 Ga0495605_0100569 3300046474 Bacteria 1330
181 Ga0495606_0191272 3300046507 Bacteria 1173
182 Ga0495610_0068958 3300046512 Bacteria 1656
183 Ga0495628_0006846 3300046516 Bacteria 9907
184 Ga0495630_0164496 3300046517 Bacteria 1689
185 Ga0495643_0029388 3300046522 Bacteria 3075
186 Ga0495642_0021195 3300046528 Bacteria 2555
187 Ga0495609_0007505 3300046538 Bacteria 5437
188 Ga0495597_0005312 3300046542 Bacteria 6832
189 Ga0495645_0064035 3300046543 Bacteria 2661
190 Ga0495645_0338649 3300046543 Bacteria 972
191 Ga0495622_0004406 3300046557 Bacteria 6547
192 Ga0495668_0013483 3300046616 Bacteria 4819
193 Ga0495611_0014276 3300046648 Bacteria 3391
194 Ga0495625_0006773 3300046660 Bacteria 10136
195 Ga0495669_0080842 3300046684 Bacteria 1491
196 Ga0495669_0084758 3300046684 Bacteria 1458
197 Ga0495670_0165993 3300046691 Bacteria 1162
198 Ga0495686_0002801 3300047472 Bacteria 15832
199 Ga0496104_0401087 3300048907 Bacteria 1284
200 Ga0496108_0057292 3300048911 Bacteria 3274
201 Ga0496109_0018802 3300048912 Bacteria 6077
202 Ga0496112_0054412 3300048915 Bacteria 3932
203 Ga0496112_0099926 3300048915 Bacteria 2871
204 Ga0496115_0002634 3300048918 Bacteria 12889
205 Ga0496115_0057680 3300048918 Bacteria 3123
206 Ga0496117_0027259 3300048920 Bacteria 4454
207 Ga0496118_0003631 3300048921 Bacteria 19154
208 Ga0496119_0010843 3300048922 Bacteria 7622
209 Ga0496121_0000442 3300048924 Bacteria 81890
210 Ga0501043_0236524 3300049579 Bacteria 1410
211 Ga0501047_0006727 3300049581 Bacteria 10807
212 Ga0501035_0252180 3300049822 Bacteria 1498
213 Ga0501044_0008242 3300049823 Bacteria 11430
214 nmdc:mga00v17_1127_c1 3300050491 Bacteria 14021
215 nmdc:mga07m45_2650_c1 3300050496 Bacteria 8433
216 nmdc:mga0sz30_75828_c1 3300050516 Bacteria 1451
217 Ga0500635_0000222 3300053080 Bacteria 26067
218 Ga0500583_0096897 3300053092 Bacteria 1441
219 Ga0500555_000786 3300053103 Bacteria 11595
220 Ga0500556_0003870 3300053104 Bacteria 4333
221 Ga0500595_005427 3300053119 Bacteria 5566
222 Ga0500595_032377 3300053119 Bacteria 1746
223 Ga0500607_028918 3300053121 Bacteria 3065
224 Ga0500608_001676 3300053122 Bacteria 7944
225 Ga0500642_0052400 3300053130 Bacteria 1806
226 Ga0500620_041222 3300053155 Bacteria 1516
227 Ga0500636_0005801 3300053177 Bacteria 7070
228 Ga0500637_0000821 3300053178 Bacteria 12396
229 Ga0500645_003505 3300053730 Bacteria 6342
230 Ga0500596_003521 3300053735 Bacteria 2962

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300026035 Ga0207703_10232416 Ga0207703_102324161 250
2 3300048907 Ga0496104_0401087 Ga0496104_0401087_450_1229 259
3 3300046557 Ga0495622_0004406 Ga0495622_0004406_1112_2071 267
4 3300053122 Ga0500608_001676 Ga0500608_001676_2349_3308 267
5 3300006946 Ga0079104_1009027 Ga0079104_10090272 268
6 3300046660 Ga0495625_0006773 Ga0495625_0006773_5549_6499 268
7 3300046691 Ga0495670_0165993 Ga0495670_0165993_191_1144 269
8 3300005331 Ga0070670_100288308 Ga0070670_1002883081 271
9 3300005618 Ga0068864_100000265 Ga0068864_10000026513 271
10 3300005841 Ga0068863_100001274 Ga0068863_10000127413 271
11 3300005842 Ga0068858_100000408 Ga0068858_10000040839 271
12 3300009092 Ga0105250_10083063 Ga0105250_100830631 271
13 3300025711 Ga0207696_1048098 Ga0207696_10480982 271
14 3300026035 Ga0207703_10000171 Ga0207703_100001718 271
15 3300026088 Ga0207641_10000007 Ga0207641_10000007385 271
16 3300026095 Ga0207676_10000268 Ga0207676_1000026814 271
17 3300005616 Ga0068852_100015413 Ga0068852_1000154135 272
18 3300028786 Ga0307517_10084725 Ga0307517_100847252 272
19 3300046507 Ga0495606_0191272 Ga0495606_0191272_100_1059 272
20 3300046512 Ga0495610_0068958 Ga0495610_0068958_413_1372 272
21 3300046522 Ga0495643_0029388 Ga0495643_0029388_1970_2929 272
22 3300046538 Ga0495609_0007505 Ga0495609_0007505_2073_3032 272
23 3300046542 Ga0495597_0005312 Ga0495597_0005312_880_1839 272
24 3300053092 Ga0500583_0096897 Ga0500583_0096897_287_1246 272
25 3300053119 Ga0500595_005427 Ga0500595_005427_4264_5223 272
26 3300053155 Ga0500620_041222 Ga0500620_041222_382_1341 272
27 3300025942 Ga0207689_10178057 Ga0207689_101780572 274
28 3300049581 Ga0501047_0006727 Ga0501047_0006727_3470_4420 275
29 3300053735 Ga0500596_003521 Ga0500596_003521_1097_2056 276
30 3300053080 Ga0500635_0000222 Ga0500635_0000222_2277_3236 277
31 3300053121 Ga0500607_028918 Ga0500607_028918_1967_2926 277
32 3300053177 Ga0500636_0005801 Ga0500636_0005801_2442_3401 277
33 3300053178 Ga0500637_0000821 Ga0500637_0000821_9186_10145 277
34 3300035113 Ga0373936_0007512 Ga0373936_0007512_2061_2996 280
35 3300046543 Ga0495645_0338649 Ga0495645_0338649_82_960 280
36 3300050496 nmdc:mga07m45_2650_c1 nmdc:mga07m45_2650_c1_6439_7392 285
37 3300046474 Ga0495605_0100569 Ga0495605_0100569_11_973 290
38 3300046684 Ga0495669_0080842 Ga0495669_0080842_73_1035 290
39 3300046648 Ga0495611_0014276 Ga0495611_0014276_1700_2647 291
40 3300025909 Ga0207705_10100976 Ga0207705_101009762 292
41 3300053119 Ga0500595_032377 Ga0500595_032377_491_1444 292
42 3300009093 Ga0105240_10054934 Ga0105240_100549342 294
43 3300025913 Ga0207695_10136535 Ga0207695_101365353 294
44 3300026121 Ga0207683_10392963 Ga0207683_103929632 294
45 3300009176 Ga0105242_10051361 Ga0105242_100513613 295
46 3300025934 Ga0207686_10035251 Ga0207686_100352513 295
47 3300041997 Ga0439431_0029262 Ga0439431_0029262_153_1115 295
48 3300005335 Ga0070666_10331857 Ga0070666_103318571 296
49 3300005353 Ga0070669_100054059 Ga0070669_1000540593 296
50 3300005355 Ga0070671_100001734 Ga0070671_10000173417 296
51 3300005617 Ga0068859_100007360 Ga0068859_1000073602 296
52 3300005841 Ga0068863_100016489 Ga0068863_1000164893 296
53 3300006931 Ga0097620_100007360 Ga0097620_1000073602 296
54 3300009177 Ga0105248_10019280 Ga0105248_100192806 296
55 3300013306 Ga0163162_10050032 Ga0163162_100500323 296
56 3300014968 Ga0157379_10000951 Ga0157379_1000095112 296
57 3300025903 Ga0207680_10273220 Ga0207680_102732202 296
58 3300025923 Ga0207681_10037682 Ga0207681_100376822 296
59 3300025931 Ga0207644_10000370 Ga0207644_100003704 296
60 3300025941 Ga0207711_10011442 Ga0207711_100114424 296
61 3300026088 Ga0207641_10013531 Ga0207641_100135318 296
62 3300028379 Ga0268266_10007907 Ga0268266_100079072 296
63 3300005563 Ga0068855_100060412 Ga0068855_1000604122 297
64 3300025949 Ga0207667_10111961 Ga0207667_101119613 297
65 3300005331 Ga0070670_100079125 Ga0070670_1000791254 298
66 3300005347 Ga0070668_100002941 Ga0070668_10000294113 298
67 3300006051 Ga0075364_10002070 Ga0075364_100020704 298
68 3300006178 Ga0075367_10005244 Ga0075367_100052443 298
69 3300025925 Ga0207650_10020456 Ga0207650_100204564 298
70 3300025972 Ga0207668_10005301 Ga0207668_100053013 298
71 3300028381 Ga0268264_10047389 Ga0268264_100473893 298
72 3300050491 nmdc:mga00v17_1127_c1 nmdc:mga00v17_1127_c1_10082_11035 298
73 3300050516 nmdc:mga0sz30_75828_c1 nmdc:mga0sz30_75828_c1_444_1397 298
74 3300035692 Ga0373935_0297926 Ga0373935_0297926_25_978 299
75 3300005336 Ga0070680_100005593 Ga0070680_1000055932 300
76 3300005458 Ga0070681_10099215 Ga0070681_100992152 300
77 3300005563 Ga0068855_100012603 Ga0068855_1000126036 300
78 3300009093 Ga0105240_10008112 Ga0105240_100081128 300
79 3300013104 Ga0157370_10069818 Ga0157370_100698182 300
80 3300013307 Ga0157372_10050875 Ga0157372_100508753 300
81 3300025912 Ga0207707_10051962 Ga0207707_100519622 300
82 3300025913 Ga0207695_10044584 Ga0207695_100445843 300
83 3300025949 Ga0207667_10034805 Ga0207667_100348051 300
84 3300026142 Ga0207698_10034095 Ga0207698_100340952 300
85 3300048918 Ga0496115_0002634 Ga0496115_0002634_3265_4224 301
86 3300006028 Ga0070717_10021462 Ga0070717_100214622 304
87 3300037418 Ga0395900_0034699 Ga0395900_0034699_1751_2689 304
88 3300038443 Ga0395901_0043910 Ga0395901_0043910_3410_4348 304
89 3300031251 Ga0265327_10026772 Ga0265327_100267723 305
90 3300037312 Ga0395899_0155577 Ga0395899_0155577_54_998 305
91 3300046684 Ga0495669_0084758 Ga0495669_0084758_101_1042 305
92 3300048915 Ga0496112_0099926 Ga0496112_0099926_855_1808 305
93 iso_pu_bacteria 2643221614 2644085275 305
94 iso_pu_bacteria 2643221661 2644342827 305
95 iso_pu_bacteria 2643221666 2644366127 305
96 3300005327 Ga0070658_10051627 Ga0070658_100516273 306
97 3300009093 Ga0105240_10024806 Ga0105240_100248063 306
98 3300009093 Ga0105240_10040822 Ga0105240_100408224 306
99 3300009098 Ga0105245_10132610 Ga0105245_101326103 306
100 3300009551 Ga0105238_10018054 Ga0105238_100180542 306
101 3300025909 Ga0207705_10159045 Ga0207705_101590452 306
102 3300025913 Ga0207695_10047544 Ga0207695_100475442 306
103 3300025919 Ga0207657_10083514 Ga0207657_100835143 306
104 3300025924 Ga0207694_10038726 Ga0207694_100387262 306
105 3300025927 Ga0207687_10183991 Ga0207687_101839912 306
106 3300028379 Ga0268266_10030914 Ga0268266_100309144 306
107 3300028786 Ga0307517_10042853 Ga0307517_100428533 306
108 3300031456 Ga0307513_10008733 Ga0307513_100087332 306
109 3300053104 Ga0500556_0003870 Ga0500556_0003870_1936_2883 306
110 3300053130 Ga0500642_0052400 Ga0500642_0052400_492_1439 306
111 3300005331 Ga0070670_100000007 Ga0070670_100000007343 307
112 3300005335 Ga0070666_10033693 Ga0070666_100336932 307
113 3300005336 Ga0070680_100001013 Ga0070680_10000101315 307
114 3300005339 Ga0070660_100019293 Ga0070660_1000192934 307
115 3300005339 Ga0070660_100053830 Ga0070660_1000538303 307
116 3300005347 Ga0070668_100000698 Ga0070668_1000006983 307
117 3300005366 Ga0070659_100006805 Ga0070659_1000068056 307
118 3300005366 Ga0070659_100009207 Ga0070659_1000092076 307
119 3300005367 Ga0070667_100004165 Ga0070667_1000041659 307
120 3300005367 Ga0070667_100007220 Ga0070667_1000072204 307
121 3300005458 Ga0070681_10009874 Ga0070681_100098741 307
122 3300005530 Ga0070679_100014598 Ga0070679_1000145986 307
123 3300005539 Ga0068853_100011939 Ga0068853_1000119392 307
124 3300005539 Ga0068853_100152342 Ga0068853_1001523422 307
125 3300005548 Ga0070665_100000494 Ga0070665_10000049426 307
126 3300005548 Ga0070665_100001645 Ga0070665_10000164522 307
127 3300005563 Ga0068855_100030480 Ga0068855_1000304801 307
128 3300005563 Ga0068855_100093170 Ga0068855_1000931703 307
129 3300005618 Ga0068864_100000095 Ga0068864_1000000959 307
130 3300005719 Ga0068861_100086764 Ga0068861_1000867643 307
131 3300005841 Ga0068863_100000566 Ga0068863_10000056636 307
132 3300005842 Ga0068858_100004569 Ga0068858_1000045696 307
133 3300005843 Ga0068860_100000204 Ga0068860_100000204100 307
134 3300005844 Ga0068862_100001099 Ga0068862_10000109922 307
135 3300009093 Ga0105240_10032437 Ga0105240_100324376 307
136 3300009177 Ga0105248_10021534 Ga0105248_100215343 307
137 3300009177 Ga0105248_10878274 Ga0105248_108782741 307
138 3300009553 Ga0105249_10040284 Ga0105249_100402842 307
139 3300014325 Ga0163163_10154626 Ga0163163_101546262 307
140 3300014325 Ga0163163_10406811 Ga0163163_104068111 307
141 3300014968 Ga0157379_10021413 Ga0157379_100214134 307
142 3300021384 Ga0213876_10008752 Ga0213876_100087523 307
143 3300021384 Ga0213876_10051687 Ga0213876_100516873 307
144 3300025903 Ga0207680_10001625 Ga0207680_1000162510 307
145 3300025909 Ga0207705_10000478 Ga0207705_100004785 307
146 3300025912 Ga0207707_10015165 Ga0207707_100151654 307
147 3300025912 Ga0207707_10119603 Ga0207707_101196031 307
148 3300025913 Ga0207695_10000766 Ga0207695_1000076623 307
149 3300025913 Ga0207695_10001045 Ga0207695_1000104526 307
150 3300025919 Ga0207657_10004900 Ga0207657_100049005 307
151 3300025919 Ga0207657_10048279 Ga0207657_100482793 307
152 3300025921 Ga0207652_10016937 Ga0207652_100169373 307
153 3300025925 Ga0207650_10000030 Ga0207650_100000309 307
154 3300025932 Ga0207690_10000158 Ga0207690_1000015815 307
155 3300025932 Ga0207690_10147014 Ga0207690_101470142 307
156 3300025941 Ga0207711_10005900 Ga0207711_100059003 307
157 3300025961 Ga0207712_10028878 Ga0207712_100288783 307
158 3300025972 Ga0207668_10000502 Ga0207668_1000050222 307
159 3300025986 Ga0207658_10000810 Ga0207658_100008109 307
160 3300026035 Ga0207703_10004610 Ga0207703_100046107 307
161 3300026035 Ga0207703_10123084 Ga0207703_101230842 307
162 3300026041 Ga0207639_10041169 Ga0207639_100411693 307
163 3300026041 Ga0207639_10042145 Ga0207639_100421453 307
164 3300026041 Ga0207639_10158390 Ga0207639_101583902 307
165 3300026078 Ga0207702_10384825 Ga0207702_103848252 307
166 3300026088 Ga0207641_10001223 Ga0207641_1000122328 307
167 3300026095 Ga0207676_10000095 Ga0207676_100000959 307
168 3300026118 Ga0207675_100109208 Ga0207675_1001092082 307
169 3300028379 Ga0268266_10000003 Ga0268266_10000003771 307
170 3300028379 Ga0268266_10005851 Ga0268266_100058516 307
171 3300028380 Ga0268265_10007114 Ga0268265_100071144 307
172 3300028381 Ga0268264_10000125 Ga0268264_10000125192 307
173 3300031456 Ga0307513_10000698 Ga0307513_1000069816 307
174 3300031995 Ga0307409_100412267 Ga0307409_1004122672 307
175 3300039437 Ga0436365_0198822 Ga0436365_0198822_7602_8543 307
176 3300039437 Ga0436365_1071875 Ga0436365_1071875_206_1159 307
177 3300046516 Ga0495628_0006846 Ga0495628_0006846_7788_8747 307
178 3300046517 Ga0495630_0164496 Ga0495630_0164496_273_1232 307
179 3300046543 Ga0495645_0064035 Ga0495645_0064035_626_1585 307
180 3300048918 Ga0496115_0057680 Ga0496115_0057680_130_1092 307
181 3300053103 Ga0500555_000786 Ga0500555_000786_8402_9352 307
182 3300005344 Ga0070661_100453111 Ga0070661_1004531111 308
183 3300005548 Ga0070665_100018885 Ga0070665_1000188855 308
184 3300009093 Ga0105240_10362745 Ga0105240_103627452 308
185 3300009177 Ga0105248_10002867 Ga0105248_100028673 308
186 3300025941 Ga0207711_10001411 Ga0207711_1000141124 308
187 3300039437 Ga0436365_1869343 Ga0436365_1869343_90_1055 308
188 3300048920 Ga0496117_0027259 Ga0496117_0027259_1177_2130 308
189 3300048921 Ga0496118_0003631 Ga0496118_0003631_11128_12081 308
190 3300048922 Ga0496119_0010843 Ga0496119_0010843_3247_4200 308
191 3300048924 Ga0496121_0000442 Ga0496121_0000442_70449_71402 308
192 3300037312 Ga0395899_0002424 Ga0395899_0002424_7962_8921 309
193 3300037418 Ga0395900_0000567 Ga0395900_0000567_25677_26636 309
194 3300037466 Ga0395898_0016667 Ga0395898_0016667_4387_5346 309
195 3300037471 Ga0395905_0007470 Ga0395905_0007470_5525_6484 309
196 3300037471 Ga0395905_0176163 Ga0395905_0176163_39_1001 309
197 3300038443 Ga0395901_0000032 Ga0395901_0000032_49255_50214 309
198 3300005355 Ga0070671_100284172 Ga0070671_1002841722 310
199 3300005618 Ga0068864_100022033 Ga0068864_1000220333 310
200 3300006237 Ga0097621_100187221 Ga0097621_1001872212 310
201 3300009177 Ga0105248_10061443 Ga0105248_100614432 310
202 3300013306 Ga0163162_10329831 Ga0163162_103298312 310
203 3300013308 Ga0157375_10023784 Ga0157375_100237842 310
204 3300025925 Ga0207650_10028050 Ga0207650_100280503 310
205 3300025931 Ga0207644_10051278 Ga0207644_100512783 310
206 3300025933 Ga0207706_10066892 Ga0207706_100668923 310
207 3300026035 Ga0207703_10070851 Ga0207703_100708512 310
208 3300026088 Ga0207641_10600625 Ga0207641_106006251 310
209 3300026095 Ga0207676_10022954 Ga0207676_100229543 310
210 3300027378 Ga0209981_1000226 Ga0209981_10002263 310
211 3300027543 Ga0209999_1000702 Ga0209999_10007025 310
212 3300046528 Ga0495642_0021195 Ga0495642_0021195_1131_2090 310
213 3300047472 Ga0495686_0002801 Ga0495686_0002801_11496_12452 310
214 3300048911 Ga0496108_0057292 Ga0496108_0057292_1688_2647 310
215 3300048912 Ga0496109_0018802 Ga0496109_0018802_4641_5600 310
216 3300048915 Ga0496112_0054412 Ga0496112_0054412_1051_2010 310
217 3300049579 Ga0501043_0236524 Ga0501043_0236524_313_1269 310
218 3300049822 Ga0501035_0252180 Ga0501035_0252180_57_1013 310
219 3300049823 Ga0501044_0008242 Ga0501044_0008242_10266_11225 310
220 3300003791 Ga0055530_10000045 Ga0055530_1000004588 311
221 3300003794 Ga0055531_10001771 Ga0055531_100017714 311
222 3300005262 Ga0065165_1000649 Ga0065165_100064920 311
223 3300009174 Ga0105241_10097173 Ga0105241_100971732 311
224 3300009551 Ga0105238_10036353 Ga0105238_100363532 311
225 3300025250 Ga0209026_1001832 Ga0209026_10018329 311
226 3300025297 Ga0209758_1005599 Ga0209758_10055996 311
227 3300025298 Ga0209050_1000121 Ga0209050_100012124 311
228 3300025304 Ga0209257_1000125 Ga0209257_100012548 311
229 3300025304 Ga0209257_1000706 Ga0209257_100070640 311
230 3300025924 Ga0207694_10015496 Ga0207694_100154962 311
231 3300032005 Ga0307411_10116772 Ga0307411_101167722 311
232 3300046616 Ga0495668_0013483 Ga0495668_0013483_370_1335 311
233 3300053730 Ga0500645_003505 Ga0500645_003505_1515_2474 311

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00482

T2SSF

Type II secretion system (T2SS), protein F

178

308

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2whn-assembly1.cif.gz_A n-terminal domain from the pilc type iv pilus biogenesis protein 0.875 162 267
5nbg-assembly1.cif.gz_B structure of the cytoplasmic domain i of outf in the d. dadantii type ii secretion system 0.8616 162 272
3c1q-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.8464 162 270
2vmb-assembly2.cif.gz_B the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.8362 162 282
5nbg-assembly1.cif.gz_B structure of the cytoplasmic domain i of outf in the d. dadantii type ii secretion system 0.833 162 272
ID Description Score Start End Superfamily
af_P36646_249_359_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.8321 162 267 1.20.81.30
af_P36646_52_165_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.8053 159 273 1.20.81.30
af_P41441_261_365_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.8042 166 276 1.20.81.30
af_P41441_261_365_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.7651 166 276 1.20.81.30
af_P36646_52_165_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.7624 159 273 1.20.81.30
ID Description Score Start End GO Terms
AF-A0A4Q3SMF9-F1-model_v4 Type II secretion system F family protein 0.8977 161 310 GO:0005886
AF-A0A529Q458-F1-model_v4 Type II secretion system F family protein 0.8937 125 261 GO:0005886
AF-A0A4S0V8E1-F1-model_v4 Type II secretion system F family protein 0.8913 143 284 GO:0005886
AF-A0A5R2N1Y6-F1-model_v4 Type II secretion system F family protein 0.8888 148 288 GO:0005886
AF-F0GJC4-F1-model_v4 Type II secretion system protein 0.8847 133 307 GO:0005886

Feature Viewer

pLDDT pTM Quality
73.42 0.6 Medium
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Predicted Structure (AlphaFold2)

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