F344817

General Info

Members Datasets Scaffolds Average Seq Length
232 161 229 285

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100004682|Ga0070706_1000046823
Length 316
Sequence MTNRSVMYSAAPDLSNKLPPHGRRLPAWTIAPVSVDHYENFPVASFLCPPALRPAVAAIYWFARTADDLADEGDANADMRLRELSAYRADLLAVAAGRAPSSRWAAVFEPLGGSLQQHRLPIALLTDLLSAFEQDVVKQRYADRAELLDYCRRSANPVGRLLLHLYGITDPVALRQSDAICTALQLANFWQDLSVDTARDRLYVPATDAMRHGVEPAQLLVRTDTPAARALVAELVAWTGELMRSGAPLALAIPGRAGWELRLVVQGGLRILEKIERSRYASLSQRPTLRRWDAPLLLWRALSMRADHAAVAQESA

Samples

Sample ID Description Type Environment
1 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
2 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
3 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
4 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
5 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
6 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
7 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
8 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
9 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
10 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
14 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
15 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
16 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
17 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
18 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
19 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
20 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
21 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
22 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
23 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
24 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
25 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
28 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
29 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
30 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
33 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
34 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
35 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
36 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
40 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
43 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
44 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
45 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
46 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
47 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
48 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
49 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
52 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
55 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
57 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
70 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
71 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
72 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
73 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
76 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
77 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
87 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
88 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
89 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
90 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
91 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
92 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
93 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
94 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
95 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
96 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
97 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
98 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
99 3300042118 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_082316_2156 Metagenome Rhizosphere
100 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
101 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
102 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
103 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
104 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
105 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
106 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
107 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
108 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
109 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
110 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
111 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
112 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
113 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
114 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
115 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
116 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
117 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
118 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
119 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
120 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
121 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
122 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
123 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
124 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
133 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
134 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
135 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
136 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
137 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
138 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
139 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
140 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
141 3300049762 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control Metagenome Rhizosphere
142 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
143 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
144 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
145 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
146 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
147 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
148 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
149 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
150 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
151 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
152 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
153 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
154 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
155 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
156 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
157 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
158 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
159 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
160 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
161 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.71
Metatranscriptomes 0
Isolates 1.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 37.5
Nodule 0.43
Rhizoplane 2.16
Rhizosphere 45.26
Stem 0
Stem Tuber 0
Unclassified 14.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000008 3300002704 Bacteria 236146
2 JGI25156J39149_1000002 3300002705 Bacteria 343501
3 JGI25154J39366_1000010 3300002738 Bacteria 297985
4 JGI25157J39369_1000001 3300002741 Bacteria 363277
5 JGI25150J39212_1006226 3300002774 Bacteria 2482
6 JGI25159J45721_1000182 3300002987 Bacteria 29091
7 JGI25159J45721_1004952 3300002987 Bacteria 4270
8 JGI25151J46595_10019623 3300003187 Bacteria 2868
9 JGI25151J46595_10034606 3300003187 Bacteria 1929
10 JGI25151J46595_10064748 3300003187 Bacteria 1142
11 rootH1_10052546 3300003316 Bacteria 2470
12 rootL2_10024985 3300003322 Bacteria 4419
13 rootL2_10034680 3300003322 Bacteria 2813
14 rootL2_10065113 3300003322 Bacteria 2666
15 JGI25160J50197_1000179 3300003354 Bacteria 53666
16 JGI25161J50226_1000076 3300003374 Bacteria 84478
17 Ga0055526_1007284 3300003771 Bacteria 5792
18 Ga0055526_1010039 3300003771 Bacteria 4462
19 Ga0055526_1041252 3300003771 Bacteria 1151
20 Ga0055537_1000603 3300003773 Bacteria 19918
21 Ga0055524_1000130 3300003775 Bacteria 88754
22 Ga0055536_1005780 3300003781 Bacteria 5960
23 Ga0055534_1000449 3300003784 Bacteria 24146
24 Ga0055528_1001191 3300003790 Bacteria 16793
25 Ga0055528_1002322 3300003790 Bacteria 10309
26 Ga0055530_10001034 3300003791 Bacteria 22165
27 Ga0055540_1002325 3300003792 Bacteria 10179
28 Ga0055540_1007596 3300003792 Bacteria 4056
29 Ga0055531_10000791 3300003794 Bacteria 26292
30 Ga0055531_10001278 3300003794 Bacteria 18967
31 Ga0055543_1000118 3300004625 Bacteria 66892
32 Ga0065165_1011351 3300005262 Bacteria 3730
33 Ga0065165_1022185 3300005262 Bacteria 2184
34 Ga0065165_1022196 3300005262 Bacteria 2183
35 Ga0070667_100051368 3300005367 Bacteria 3476
36 Ga0070663_100000548 3300005455 Bacteria 19952
37 Ga0068867_100000610 3300005459 Bacteria 23663
38 Ga0070706_100004682 3300005467 Bacteria 13119
39 Ga0070707_100106965 3300005468 Bacteria 2713
40 Ga0068853_100083539 3300005539 Bacteria 2798
41 Ga0075363_100095607 3300006048 Bacteria 1639
42 Ga0075432_10016542 3300006058 Bacteria 2517
43 Ga0075362_10008317 3300006177 Bacteria 3963
44 Ga0075362_10155721 3300006177 Bacteria 1098
45 Ga0075367_10005903 3300006178 Bacteria 6141
46 Ga0075367_10027742 3300006178 Bacteria 3224
47 Ga0075366_10000189 3300006195 Bacteria 27251
48 Ga0075366_10005428 3300006195 Bacteria 6906
49 Ga0075366_10037658 3300006195 Bacteria 2856
50 Ga0075366_10102413 3300006195 Bacteria 1719
51 Ga0075370_10011048 3300006353 Bacteria 4735
52 Ga0075430_100311964 3300006846 Bacteria 1301
53 Ga0079104_1015811 3300006946 Bacteria 2225
54 Ga0105243_10002067 3300009148 Bacteria 17017
55 Ga0157374_10286592 3300013296 Bacteria 1627
56 Ga0157377_10000014 3300014745 Bacteria 213961
57 Ga0209435_100001 3300025206 Bacteria 1424171
58 Ga0209436_102606 3300025208 Bacteria 5296
59 Ga0207425_1003021 3300025245 Bacteria 5593
60 Ga0209646_1000001 3300025246 Bacteria 3092932
61 Ga0209026_1000001 3300025250 Bacteria 1228671
62 Ga0209759_1000001 3300025256 Bacteria 2799452
63 Ga0209565_1000161 3300025263 Bacteria 90019
64 Ga0209565_1001556 3300025263 Bacteria 9816
65 Ga0209673_1001262 3300025273 Bacteria 26047
66 Ga0209673_1022045 3300025273 Bacteria 2208
67 Ga0209130_1000041 3300025284 Bacteria 261078
68 Ga0209130_1000984 3300025284 Bacteria 22291
69 Ga0209675_1000128 3300025291 Bacteria 103111
70 Ga0209675_1006585 3300025291 Bacteria 4627
71 Ga0209676_1000054 3300025292 Bacteria 365890
72 Ga0209676_1007455 3300025292 Bacteria 5133
73 Ga0209025_1002467 3300025294 Bacteria 19485
74 Ga0209025_1003275 3300025294 Bacteria 15588
75 Ga0209025_1017625 3300025294 Bacteria 4106
76 Ga0209025_1055631 3300025294 Bacteria 1528
77 Ga0209564_1001827 3300025295 Bacteria 19532
78 Ga0209564_1001838 3300025295 Bacteria 19444
79 Ga0209564_1005574 3300025295 Bacteria 7111
80 Ga0209758_1007180 3300025297 Bacteria 7680
81 Ga0209050_1000066 3300025298 Bacteria 305458
82 Ga0209050_1005458 3300025298 Bacteria 7975
83 Ga0209256_1000003 3300025299 Bacteria 1661127
84 Ga0207426_1000061 3300025302 Bacteria 362507
85 Ga0207426_1001601 3300025302 Bacteria 18025
86 Ga0209051_1000044 3300025303 Bacteria 305458
87 Ga0209051_1000115 3300025303 Bacteria 152010
88 Ga0209257_1000055 3300025304 Bacteria 415534
89 Ga0209257_1000082 3300025304 Bacteria 305458
90 Ga0209257_1044060 3300025304 Bacteria 1304
91 Ga0207684_10003491 3300025910 Bacteria 15343
92 Ga0207646_10115427 3300025922 Bacteria 2412
93 Ga0207709_10007556 3300025935 Bacteria 6040
94 Ga0207658_10030044 3300025986 Bacteria 3844
95 Ga0207678_10000473 3300026067 Bacteria 36408
96 Ga0207648_10001210 3300026089 Bacteria 28894
97 Ga0209974_10000129 3300027876 Bacteria 22443
98 Ga0307515_10001547 3300028794 Bacteria 51411
99 Ga0307515_10002041 3300028794 Bacteria 44592
100 Ga0307515_10060228 3300028794 Bacteria 5420
101 Ga0307515_10070656 3300028794 Bacteria 4747
102 Ga0265332_10000003 3300031238 Bacteria 482849
103 Ga0265328_10062618 3300031239 Bacteria 1366
104 Ga0307513_10000012 3300031456 Bacteria 328865
105 Ga0307513_10000021 3300031456 Bacteria 228078
106 Ga0307513_10037957 3300031456 Bacteria 5354
107 Ga0307513_10057010 3300031456 Bacteria 4166
108 Ga0307509_10010178 3300031507 Bacteria 11570
109 Ga0307509_10138515 3300031507 Bacteria 2374
110 Ga0307408_100005862 3300031548 Bacteria 8176
111 Ga0307408_100127356 3300031548 Bacteria 1982
112 Ga0307508_10000272 3300031616 Bacteria 63553
113 Ga0307516_10000094 3300031730 Bacteria 100401
114 Ga0307516_10006605 3300031730 Bacteria 13558
115 Ga0307516_10081532 3300031730 Bacteria 3078
116 Ga0307406_10086186 3300031901 Bacteria 2102
117 Ga0307412_10103074 3300031911 Bacteria 2022
118 Ga0307507_10010967 3300033179 Bacteria 11543
119 Ga0373937_0263848 3300036401 Bacteria 1624
120 Ga0395899_0114087 3300037312 Bacteria 1940
121 Ga0395900_0057145 3300037418 Bacteria 4016
122 Ga0395900_0172101 3300037418 Bacteria 2204
123 Ga0395900_0195835 3300037418 Bacteria 2047
124 Ga0395900_0208381 3300037418 Bacteria 1975
125 Ga0395898_0021290 3300037466 Bacteria 6577
126 Ga0395905_0046030 3300037471 Bacteria 4092
127 Ga0395905_0361895 3300037471 Bacteria 1343
128 Ga0395901_0219916 3300038443 Bacteria 1985
129 Ga0395901_0259056 3300038443 Bacteria 1810
130 Ga0395901_0378996 3300038443 Bacteria 1456
131 Ga0439436_0028153 3300041404 Bacteria 1641
132 Ga0439453_0008301 3300041408 Bacteria 1666
133 Ga0439461_0014386 3300041410 Bacteria 1505
134 Ga0439465_0031362 3300041413 Bacteria 1693
135 Ga0451791_0913812 3300041451 Bacteria 1169
136 Ga0451798_0697434 3300041458 Bacteria 1645
137 Ga0451800_0182735 3300041459 Bacteria 2155
138 Ga0451807_2491714 3300041486 Bacteria 1270
139 Ga0451839_1361857 3300041496 Bacteria 1942
140 Ga0451849_0031814 3300041505 Bacteria 1622
141 Ga0451853_0987798 3300041512 Bacteria 1227
142 Ga0451853_2163735 3300041512 Bacteria 2238
143 Ga0439431_0001745 3300041997 Bacteria 4794
144 Ga0439433_0003555 3300041999 Bacteria 3350
145 Ga0450914_009231 3300042118 Bacteria 931
146 Ga0439446_0015464 3300042156 Bacteria 2117
147 Ga0439458_0005482 3300042157 Bacteria 2852
148 Ga0439464_0017894 3300042439 Bacteria 1925
149 Ga0439460_0053641 3300042461 Bacteria 1215
150 Ga0450893_0009257 3300042532 Bacteria 1608
151 Ga0451577_0010689 3300042876 Bacteria 8739
152 Ga0451577_0095726 3300042876 Bacteria 2651
153 Ga0451577_0192043 3300042876 Bacteria 1842
154 Ga0451577_0445834 3300042876 Bacteria 1175
155 Ga0453683_0023713 3300044673 Bacteria 3909
156 Ga0466966_0241158 3300044684 Bacteria 1090
157 Ga0453684_0014312 3300044712 Bacteria 12713
158 Ga0453684_0063851 3300044712 Bacteria 4707
159 Ga0453684_0297180 3300044712 Bacteria 1837
160 Ga0466957_0089777 3300044842 Bacteria 1924
161 Ga0451576_0019838 3300045051 Bacteria 7331
162 Ga0466967_0938132 3300045976 Bacteria 861
163 Ga0495594_0203413 3300046499 Bacteria 1129
164 Ga0495610_0035021 3300046512 Bacteria 2581
165 Ga0495632_0057435 3300046519 Bacteria 1899
166 Ga0495632_0112203 3300046519 Bacteria 1279
167 Ga0495643_0068143 3300046522 Bacteria 1873
168 Ga0495633_0045545 3300046558 Bacteria 2077
169 Ga0495656_0152054 3300046615 Bacteria 1119
170 Ga0495685_024903 3300047447 Bacteria 2060
171 Ga0495686_0171210 3300047472 Bacteria 1263
172 Ga0496102_0054448 3300048905 Bacteria 3648
173 Ga0496121_0010336 3300048924 Bacteria 10546
174 Ga0496124_0000151 3300048927 Bacteria 142761
175 Ga0496125_0080707 3300048928 Bacteria 2488
176 Ga0501036_0153479 3300049572 Bacteria 1942
177 Ga0501039_0021140 3300049575 Bacteria 4992
178 Ga0501039_0227425 3300049575 Bacteria 1466
179 Ga0501041_0009409 3300049577 Bacteria 5761
180 Ga0501042_0045603 3300049578 Bacteria 3125
181 Ga0501042_0182725 3300049578 Bacteria 1513
182 Ga0501043_0000023 3300049579 Bacteria 154331
183 Ga0501043_0110956 3300049579 Bacteria 2153
184 Ga0501046_0000018 3300049580 Bacteria 220589
185 Ga0501046_0051040 3300049580 Bacteria 3266
186 Ga0501046_0271413 3300049580 Bacteria 1244
187 Ga0501047_0000020 3300049581 Bacteria 259377
188 Ga0501048_0003652 3300049582 Bacteria 11720
189 Ga0501068_0201844 3300049584 Bacteria 1261
190 Ga0501075_0004026 3300049591 Bacteria 9911
191 Ga0501076_0005271 3300049592 Bacteria 9272
192 Ga0501076_0071097 3300049592 Bacteria 2783
193 Ga0501077_0053248 3300049593 Bacteria 2569
194 Ga0501077_0071039 3300049593 Bacteria 2206
195 Ga0501198_000002 3300049649 Bacteria 197356
196 Ga0501222_000002 3300049662 Bacteria 169093
197 Ga0501079_0005655 3300049741 Bacteria 9330
198 Ga0501079_0333218 3300049741 Bacteria 1188
199 Ga0501080_0047527 3300049742 Bacteria 3995
200 Ga0501083_0054375 3300049744 Bacteria 2687
201 Ga0501265_000852 3300049762 Bacteria 3388
202 Ga0501044_0171075 3300049823 Bacteria 2144
203 nmdc:mga03683_18890_c1 3300050489 Bacteria 1478
204 nmdc:mga0k408_130354_c1 3300050493 Bacteria 1493
205 nmdc:mga0k408_183332_c1 3300050493 Bacteria 1249
206 nmdc:mga0k408_66403_c1 3300050493 Bacteria 2101
207 nmdc:mga0k408_861_c1 3300050493 Bacteria 16722
208 nmdc:mga0k408_9328_c1 3300050493 Bacteria 5288
209 nmdc:mga06z11_76235_c1 3300050494 Bacteria 1788
210 nmdc:mga0qj67_250721_c1 3300050509 Bacteria 1436
211 Ga0500578_0043960 3300053086 Bacteria 2867
212 Ga0500644_0000758 3300053088 Bacteria 11091
213 Ga0500651_0113635 3300053093 Bacteria 1650
214 Ga0500566_0189558 3300053094 Bacteria 1048
215 Ga0500593_034594 3300053117 Bacteria 2261
216 Ga0500658_0004307 3300053134 Bacteria 5333
217 Ga0500616_0049346 3300053153 Bacteria 2228
218 Ga0500627_0043422 3300053158 Bacteria 1939
219 Ga0500645_001404 3300053730 Bacteria 12292
220 Ga0500645_002356 3300053730 Bacteria 8512
221 Ga0500645_017795 3300053730 Bacteria 2223
222 Ga0500645_034489 3300053730 Bacteria 1511
223 Ga0500587_000403 3300053739 Bacteria 5016
224 Ga0501084_0002031 3300054114 Bacteria 16163
225 Ga0500661_003942 3300055283 Bacteria 2778
226 Ga0590071_000721 3300059421 Bacteria 9326
227 Ga0501082_0004417 3300060353 Bacteria 12281
228 Ga0501082_0209499 3300060353 Bacteria 1696
229 Ga0530510_0014063 3300061734 Bacteria 5642

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300042461 Ga0439460_0053641 Ga0439460_0053641_474_1169 224
2 3300041413 Ga0439465_0031362 Ga0439465_0031362_515_1300 249
3 3300041997 Ga0439431_0001745 Ga0439431_0001745_425_1210 249
4 3300042532 Ga0450893_0009257 Ga0450893_0009257_676_1461 249
5 3300045976 Ga0466967_0938132 Ga0466967_0938132_23_784 249
6 3300047472 Ga0495686_0171210 Ga0495686_0171210_48_836 250
7 3300060353 Ga0501082_0209499 Ga0501082_0209499_31_816 250
8 3300037418 Ga0395900_0208381 Ga0395900_0208381_1180_1950 252
9 3300053086 Ga0500578_0043960 Ga0500578_0043960_127_1011 257
10 3300053730 Ga0500645_002356 Ga0500645_002356_5911_6795 257
11 3300003322 rootL2_10024985 rootL2_100249852 258
12 3300046499 Ga0495594_0203413 Ga0495594_0203413_306_1106 266
13 3300042118 Ga0450914_009231 Ga0450914_009231_28_855 267
14 3300049572 Ga0501036_0153479 Ga0501036_0153479_633_1451 269
15 3300049575 Ga0501039_0021140 Ga0501039_0021140_4080_4898 269
16 3300049575 Ga0501039_0227425 Ga0501039_0227425_579_1397 269
17 3300049577 Ga0501041_0009409 Ga0501041_0009409_400_1218 269
18 3300049578 Ga0501042_0045603 Ga0501042_0045603_410_1228 269
19 3300049579 Ga0501043_0110956 Ga0501043_0110956_1028_1846 269
20 3300049580 Ga0501046_0051040 Ga0501046_0051040_864_1682 269
21 3300049584 Ga0501068_0201844 Ga0501068_0201844_233_1051 269
22 3300049591 Ga0501075_0004026 Ga0501075_0004026_2072_2890 269
23 3300049592 Ga0501076_0005271 Ga0501076_0005271_717_1535 269
24 3300049592 Ga0501076_0071097 Ga0501076_0071097_1923_2741 269
25 3300049593 Ga0501077_0053248 Ga0501077_0053248_1186_2004 269
26 3300049593 Ga0501077_0071039 Ga0501077_0071039_962_1783 269
27 3300049741 Ga0501079_0005655 Ga0501079_0005655_6505_7323 269
28 3300049741 Ga0501079_0333218 Ga0501079_0333218_119_937 269
29 3300049742 Ga0501080_0047527 Ga0501080_0047527_555_1373 269
30 3300049744 Ga0501083_0054375 Ga0501083_0054375_213_1031 269
31 3300054114 Ga0501084_0002031 Ga0501084_0002031_4535_5353 269
32 3300060353 Ga0501082_0004417 Ga0501082_0004417_8959_9777 269
33 3300061734 Ga0530510_0014063 Ga0530510_0014063_2651_3469 269
34 iso_pu_bacteria 2585428062 2587756078 269
35 3300053088 Ga0500644_0000758 Ga0500644_0000758_5441_6253 270
36 3300053094 Ga0500566_0189558 Ga0500566_0189558_192_1004 270
37 3300053117 Ga0500593_034594 Ga0500593_034594_1152_1964 270
38 3300053730 Ga0500645_001404 Ga0500645_001404_11165_11977 270
39 3300053730 Ga0500645_017795 Ga0500645_017795_315_1127 270
40 3300055283 Ga0500661_003942 Ga0500661_003942_1621_2433 270
41 3300042876 Ga0451577_0445834 Ga0451577_0445834_196_1026 271
42 3300044712 Ga0453684_0297180 Ga0453684_0297180_950_1780 271
43 3300003316 rootH1_10052546 rootH1_100525462 272
44 3300003322 rootL2_10065113 rootL2_100651133 272
45 3300031730 Ga0307516_10000094 Ga0307516_1000009420 272
46 3300041451 Ga0451791_0913812 Ga0451791_0913812_93_911 272
47 3300046615 Ga0495656_0152054 Ga0495656_0152054_100_945 272
48 3300050493 nmdc:mga0k408_130354_c1 nmdc:mga0k408_130354_c1_138_992 272
49 3300053158 Ga0500627_0043422 Ga0500627_0043422_58_876 272
50 3300003322 rootL2_10034680 rootL2_100346803 273
51 3300006048 Ga0075363_100095607 Ga0075363_1000956072 273
52 3300006177 Ga0075362_10155721 Ga0075362_101557211 273
53 3300006178 Ga0075367_10027742 Ga0075367_100277422 273
54 3300006195 Ga0075366_10102413 Ga0075366_101024132 273
55 3300027876 Ga0209974_10000129 Ga0209974_1000012915 273
56 3300028794 Ga0307515_10001547 Ga0307515_1000154735 273
57 3300028794 Ga0307515_10002041 Ga0307515_1000204131 273
58 3300028794 Ga0307515_10060228 Ga0307515_100602285 273
59 3300031456 Ga0307513_10037957 Ga0307513_100379573 273
60 3300031456 Ga0307513_10057010 Ga0307513_100570104 273
61 3300031507 Ga0307509_10010178 Ga0307509_100101788 273
62 3300031548 Ga0307408_100127356 Ga0307408_1001273562 273
63 3300031616 Ga0307508_10000272 Ga0307508_1000027216 273
64 3300031730 Ga0307516_10081532 Ga0307516_100815322 273
65 3300031911 Ga0307412_10103074 Ga0307412_101030742 273
66 3300033179 Ga0307507_10010967 Ga0307507_100109673 273
67 3300036401 Ga0373937_0263848 Ga0373937_0263848_576_1430 273
68 3300037471 Ga0395905_0046030 Ga0395905_0046030_1154_1993 273
69 3300041458 Ga0451798_0697434 Ga0451798_0697434_731_1588 273
70 3300041459 Ga0451800_0182735 Ga0451800_0182735_1210_2067 273
71 3300041486 Ga0451807_2491714 Ga0451807_2491714_303_1160 273
72 3300041496 Ga0451839_1361857 Ga0451839_1361857_79_936 273
73 3300041505 Ga0451849_0031814 Ga0451849_0031814_577_1434 273
74 3300041512 Ga0451853_2163735 Ga0451853_2163735_548_1405 273
75 3300041999 Ga0439433_0003555 Ga0439433_0003555_981_1820 273
76 3300042876 Ga0451577_0010689 Ga0451577_0010689_850_1686 273
77 3300046512 Ga0495610_0035021 Ga0495610_0035021_241_1098 273
78 3300046519 Ga0495632_0057435 Ga0495632_0057435_77_934 273
79 3300046519 Ga0495632_0112203 Ga0495632_0112203_392_1249 273
80 3300046522 Ga0495643_0068143 Ga0495643_0068143_368_1225 273
81 3300046558 Ga0495633_0045545 Ga0495633_0045545_702_1565 273
82 3300047447 Ga0495685_024903 Ga0495685_024903_98_961 273
83 3300048905 Ga0496102_0054448 Ga0496102_0054448_752_1609 273
84 3300049762 Ga0501265_000852 Ga0501265_000852_585_1439 273
85 3300050493 nmdc:mga0k408_66403_c1 nmdc:mga0k408_66403_c1_696_1550 273
86 3300050493 nmdc:mga0k408_9328_c1 nmdc:mga0k408_9328_c1_3318_4175 273
87 3300050494 nmdc:mga06z11_76235_c1 nmdc:mga06z11_76235_c1_869_1723 273
88 3300053093 Ga0500651_0113635 Ga0500651_0113635_579_1436 273
89 3300053134 Ga0500658_0004307 Ga0500658_0004307_153_1010 273
90 3300053739 Ga0500587_000403 Ga0500587_000403_2964_3821 273
91 3300059421 Ga0590071_000721 Ga0590071_000721_6717_7577 273
92 3300037471 Ga0395905_0361895 Ga0395905_0361895_351_1199 274
93 3300041512 Ga0451853_0987798 Ga0451853_0987798_139_996 274
94 3300006195 Ga0075366_10000189 Ga0075366_100001899 275
95 3300006195 Ga0075366_10037658 Ga0075366_100376582 275
96 3300050493 nmdc:mga0k408_861_c1 nmdc:mga0k408_861_c1_9499_10359 275
97 3300005367 Ga0070667_100051368 Ga0070667_1000513683 276
98 3300005455 Ga0070663_100000548 Ga0070663_10000054819 276
99 3300005459 Ga0068867_100000610 Ga0068867_1000006103 276
100 3300005467 Ga0070706_100004682 Ga0070706_1000046823 276
101 3300005468 Ga0070707_100106965 Ga0070707_1001069652 276
102 3300006178 Ga0075367_10005903 Ga0075367_100059033 276
103 3300006195 Ga0075366_10005428 Ga0075366_100054286 276
104 3300006353 Ga0075370_10011048 Ga0075370_100110482 276
105 3300009148 Ga0105243_10002067 Ga0105243_100020678 276
106 3300013296 Ga0157374_10286592 Ga0157374_102865922 276
107 3300014745 Ga0157377_10000014 Ga0157377_10000014131 276
108 3300025910 Ga0207684_10003491 Ga0207684_1000349114 276
109 3300025922 Ga0207646_10115427 Ga0207646_101154272 276
110 3300025935 Ga0207709_10007556 Ga0207709_100075564 276
111 3300025986 Ga0207658_10030044 Ga0207658_100300443 276
112 3300026067 Ga0207678_10000473 Ga0207678_1000047328 276
113 3300026089 Ga0207648_10001210 Ga0207648_100012107 276
114 3300031507 Ga0307509_10138515 Ga0307509_101385153 276
115 3300044712 Ga0453684_0014312 Ga0453684_0014312_1745_2620 276
116 3300048924 Ga0496121_0010336 Ga0496121_0010336_2181_3032 276
117 3300048927 Ga0496124_0000151 Ga0496124_0000151_102983_103834 276
118 3300048928 Ga0496125_0080707 Ga0496125_0080707_1588_2439 276
119 3300049578 Ga0501042_0182725 Ga0501042_0182725_494_1357 276
120 3300049579 Ga0501043_0000023 Ga0501043_0000023_54470_55333 276
121 3300049580 Ga0501046_0000018 Ga0501046_0000018_165229_166092 276
122 3300049581 Ga0501047_0000020 Ga0501047_0000020_204038_204901 276
123 3300049582 Ga0501048_0003652 Ga0501048_0003652_6090_6953 276
124 3300049649 Ga0501198_000002 Ga0501198_000002_88643_89506 276
125 3300049662 Ga0501222_000002 Ga0501222_000002_99453_100316 276
126 3300049823 Ga0501044_0171075 Ga0501044_0171075_1151_2014 276
127 3300050489 nmdc:mga03683_18890_c1 nmdc:mga03683_18890_c1_516_1355 276
128 3300050493 nmdc:mga0k408_183332_c1 nmdc:mga0k408_183332_c1_88_1020 276
129 iso_pu_bacteria 2881101125 2881105137 276
130 3300003792 Ga0055540_1007596 Ga0055540_10075962 278
131 3300003794 Ga0055531_10000791 Ga0055531_100007917 278
132 3300006846 Ga0075430_100311964 Ga0075430_1003119641 278
133 3300025273 Ga0209673_1022045 Ga0209673_10220452 278
134 3300025303 Ga0209051_1000115 Ga0209051_100011517 278
135 3300025304 Ga0209257_1000055 Ga0209257_100005552 278
136 3300037418 Ga0395900_0172101 Ga0395900_0172101_330_1187 278
137 3300044673 Ga0453683_0023713 Ga0453683_0023713_1261_2118 278
138 3300045051 Ga0451576_0019838 Ga0451576_0019838_1894_2751 278
139 3300049580 Ga0501046_0271413 Ga0501046_0271413_157_1014 278
140 3300050509 nmdc:mga0qj67_250721_c1 nmdc:mga0qj67_250721_c1_194_1051 278
141 3300031238 Ga0265332_10000003 Ga0265332_10000003206 280
142 3300031239 Ga0265328_10062618 Ga0265328_100626182 280
143 3300044842 Ga0466957_0089777 Ga0466957_0089777_126_989 280
144 3300031730 Ga0307516_10006605 Ga0307516_1000660512 281
145 3300037312 Ga0395899_0114087 Ga0395899_0114087_805_1698 281
146 3300037418 Ga0395900_0057145 Ga0395900_0057145_2940_3833 281
147 3300037418 Ga0395900_0195835 Ga0395900_0195835_215_1108 281
148 3300037466 Ga0395898_0021290 Ga0395898_0021290_28_921 281
149 3300038443 Ga0395901_0219916 Ga0395901_0219916_288_1181 281
150 3300038443 Ga0395901_0259056 Ga0395901_0259056_805_1698 281
151 3300041404 Ga0439436_0028153 Ga0439436_0028153_608_1498 281
152 3300041408 Ga0439453_0008301 Ga0439453_0008301_468_1358 281
153 3300041410 Ga0439461_0014386 Ga0439461_0014386_253_1143 281
154 3300042156 Ga0439446_0015464 Ga0439446_0015464_1045_1935 281
155 3300042157 Ga0439458_0005482 Ga0439458_0005482_1315_2205 281
156 3300042439 Ga0439464_0017894 Ga0439464_0017894_586_1476 281
157 3300042876 Ga0451577_0095726 Ga0451577_0095726_1697_2593 281
158 3300044684 Ga0466966_0241158 Ga0466966_0241158_36_929 281
159 3300042876 Ga0451577_0192043 Ga0451577_0192043_114_1034 282
160 3300044712 Ga0453684_0063851 Ga0453684_0063851_2725_3645 282
161 3300006058 Ga0075432_10016542 Ga0075432_100165423 283
162 iso_pu_bacteria 2511231002 2511245523 283
163 3300031456 Ga0307513_10000012 Ga0307513_1000001257 284
164 3300038443 Ga0395901_0378996 Ga0395901_0378996_186_1097 284
165 3300028794 Ga0307515_10070656 Ga0307515_100706563 285
166 3300053153 Ga0500616_0049346 Ga0500616_0049346_284_1168 285
167 3300031456 Ga0307513_10000021 Ga0307513_10000021130 286
168 3300053730 Ga0500645_034489 Ga0500645_034489_417_1277 286
169 3300002704 JGI25155J39150_1000008 JGI25155J39150_1000008136 287
170 3300002705 JGI25156J39149_1000002 JGI25156J39149_1000002119 287
171 3300002738 JGI25154J39366_1000010 JGI25154J39366_1000010198 287
172 3300002741 JGI25157J39369_1000001 JGI25157J39369_1000001140 287
173 3300002774 JGI25150J39212_1006226 JGI25150J39212_10062262 287
174 3300002987 JGI25159J45721_1000182 JGI25159J45721_100018226 287
175 3300002987 JGI25159J45721_1004952 JGI25159J45721_10049523 287
176 3300003187 JGI25151J46595_10019623 JGI25151J46595_100196231 287
177 3300003187 JGI25151J46595_10034606 JGI25151J46595_100346062 287
178 3300003187 JGI25151J46595_10064748 JGI25151J46595_100647481 287
179 3300003354 JGI25160J50197_1000179 JGI25160J50197_10001794 287
180 3300003374 JGI25161J50226_1000076 JGI25161J50226_100007630 287
181 3300003771 Ga0055526_1007284 Ga0055526_10072843 287
182 3300003771 Ga0055526_1010039 Ga0055526_10100391 287
183 3300003771 Ga0055526_1041252 Ga0055526_10412522 287
184 3300003773 Ga0055537_1000603 Ga0055537_100060316 287
185 3300003775 Ga0055524_1000130 Ga0055524_100013057 287
186 3300003781 Ga0055536_1005780 Ga0055536_10057807 287
187 3300003784 Ga0055534_1000449 Ga0055534_10004492 287
188 3300003790 Ga0055528_1001191 Ga0055528_100119114 287
189 3300003790 Ga0055528_1002322 Ga0055528_10023227 287
190 3300003791 Ga0055530_10001034 Ga0055530_100010343 287
191 3300003792 Ga0055540_1002325 Ga0055540_10023256 287
192 3300003794 Ga0055531_10001278 Ga0055531_1000127811 287
193 3300004625 Ga0055543_1000118 Ga0055543_100011856 287
194 3300005262 Ga0065165_1011351 Ga0065165_10113512 287
195 3300005262 Ga0065165_1022185 Ga0065165_10221852 287
196 3300005262 Ga0065165_1022196 Ga0065165_10221962 287
197 3300005539 Ga0068853_100083539 Ga0068853_1000835393 287
198 3300006177 Ga0075362_10008317 Ga0075362_100083174 287
199 3300006946 Ga0079104_1015811 Ga0079104_10158112 287
200 3300025206 Ga0209435_100001 Ga0209435_1000011178 287
201 3300025208 Ga0209436_102606 Ga0209436_1026063 287
202 3300025245 Ga0207425_1003021 Ga0207425_10030213 287
203 3300025246 Ga0209646_1000001 Ga0209646_10000011547 287
204 3300025250 Ga0209026_1000001 Ga0209026_1000001200 287
205 3300025256 Ga0209759_1000001 Ga0209759_10000011178 287
206 3300025263 Ga0209565_1000161 Ga0209565_10001614 287
207 3300025263 Ga0209565_1001556 Ga0209565_10015564 287
208 3300025273 Ga0209673_1001262 Ga0209673_10012623 287
209 3300025284 Ga0209130_1000041 Ga0209130_1000041215 287
210 3300025284 Ga0209130_1000984 Ga0209130_100098418 287
211 3300025291 Ga0209675_1000128 Ga0209675_100012852 287
212 3300025291 Ga0209675_1006585 Ga0209675_10065852 287
213 3300025292 Ga0209676_1000054 Ga0209676_1000054157 287
214 3300025292 Ga0209676_1007455 Ga0209676_10074556 287
215 3300025294 Ga0209025_1002467 Ga0209025_100246717 287
216 3300025294 Ga0209025_1003275 Ga0209025_10032753 287
217 3300025294 Ga0209025_1017625 Ga0209025_10176253 287
218 3300025294 Ga0209025_1055631 Ga0209025_10556312 287
219 3300025295 Ga0209564_1001827 Ga0209564_100182715 287
220 3300025295 Ga0209564_1001838 Ga0209564_100183815 287
221 3300025295 Ga0209564_1005574 Ga0209564_10055743 287
222 3300025297 Ga0209758_1007180 Ga0209758_10071803 287
223 3300025298 Ga0209050_1000066 Ga0209050_1000066157 287
224 3300025298 Ga0209050_1005458 Ga0209050_10054583 287
225 3300025299 Ga0209256_1000003 Ga0209256_10000031430 287
226 3300025302 Ga0207426_1000061 Ga0207426_100006126 287
227 3300025302 Ga0207426_1001601 Ga0207426_100160111 287
228 3300025303 Ga0209051_1000044 Ga0209051_1000044157 287
229 3300025304 Ga0209257_1000082 Ga0209257_1000082157 287
230 3300025304 Ga0209257_1044060 Ga0209257_10440602 287
231 3300031548 Ga0307408_100005862 Ga0307408_1000058626 287
232 3300031901 Ga0307406_10086186 Ga0307406_100861862 287

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00494

SQS_PSY

Squalene/phytoene synthase

35

293

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hd1-assembly1.cif.gz_A crystal structure of squalene synthase hpnc from alicyclobacillus acidocaldarius 0.9322 18 263
5iys-assembly1.cif.gz_A crystal structure of a dehydrosqualene synthase in complex with ligand 0.8943 19 286
3nri-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from s. aureus complexed with dehydrosqualene (dhs) 0.8751 19 287
3lgz-assembly1.cif.gz_B crystal structure of dehydrosqualene synthase y129a from s. aureus complexed with presqualene pyrophosphate 0.8725 19 287
2zcr-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bisphosphonate bph-698 0.8691 29 287
ID Description Score Start End Superfamily
4hd1A00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9256 18 264 1.10.600.10
af_Q330K2_57_309_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9245 25 264 1.10.600.10
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8934 19 284 1.10.600.10
af_Q17477_122_396_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8931 25 264 1.10.600.10
af_A0A0R0HM78_74_346_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8728 25 280 1.10.600.10
ID Description Score Start End GO Terms
AF-C5TBA5-F1-model_v4 Squalene/phytoene synthase 0.9898 75 286 GO:0008299
AF-A0A519LF49-F1-model_v4 Squalene synthase HpnC (EC 2.5.1.21) 0.9896 28 286 GO:0004311
GO:0008299
GO:0051996
AF-A0A437LSB9-F1-model_v4 Squalene synthase HpnC (EC 2.5.1.21) 0.9811 22 287 GO:0004311
GO:0008299
GO:0051996
AF-A0A1Q3Y797-F1-model_v4 Squalene synthase HpnC 0.9805 16 286 GO:0004311
GO:0008299
AF-A0A257DCY7-F1-model_v4 Squalene synthase HpnC 0.9797 16 287 GO:0004311
GO:0008299
GO:0051996

Feature Viewer

pLDDT pTM Quality
88.98 0.85 High
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Predicted Structure (AlphaFold2)

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