F343884

General Info

Members Datasets Scaffolds Average Seq Length
231 112 462 344

Family's Representative Sequence

Representative Sequence 3300005981|Ga0081538_10000294|Ga0081538_1000029411
Length 407
Sequence MGSAVDGPRQWVPRSGRNVARGARVARSPGAPGLQECSALLSSPNVEVAVAPEGVRGGHGYAGPVPVDKVLLAAPRGFCAGVEMAIKALAWMVRAFEPPVYCYHEIVHNQQVVDRFRDLGVVFVDDIAEVPEGRPIMLSAHGSAPEVVAAARARGSHVVNAVCPLVTKVHHEVKVRSGKGYRIVYVGHEGHEEAVGTMAVAPEAIDLVESVADVDSLPDTDQPVALLAQTTLSHRDWAAVAERTAERFPGLWRPGRSDLCFATTNRQSALAEIASRCDAVVVIGSANSSNTRALEKLAHGSGCARVYRINAADELPDDLTGTVGVTAGASAPEELVDAVIARLAPVEGVEEVRITDEDEYFPPPRELRDLLSGVDVLATFGFGGSVPDRPEVNDRQLRASDVLAMLA

Samples

Sample ID Description Type Environment
1 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
5 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
6 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
7 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
8 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
10 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
11 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
20 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
22 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
23 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
24 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
33 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
34 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
35 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
36 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
37 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
38 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
39 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
40 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
41 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
42 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
43 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
44 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
45 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
46 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
47 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
48 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
49 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
50 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
51 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
52 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
53 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
54 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
55 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
56 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
57 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
58 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
59 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
60 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
61 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
62 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
63 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
64 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
65 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
66 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
67 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
68 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
83 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
84 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
85 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
86 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
87 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
88 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
89 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
90 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
91 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
92 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
100 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
101 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
102 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
103 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
104 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
105 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
106 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
107 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
108 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
109 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
110 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
111 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
112 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.52
Nodule 0
Rhizoplane 3.9
Rhizosphere 84.42
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081538_10000294 3300005981 Bacteria 57425
2 JGI25407J50210_10000110 3300003373 Bacteria 11569
3 Ga0070668_100124739 3300005347 Bacteria 2062
4 Ga0070671_100005222 3300005355 Bacteria 10349
5 Ga0068855_100435461 3300005563 Bacteria 1433
6 Ga0068858_100014422 3300005842 Bacteria 7451
7 Ga0068862_100050917 3300005844 Bacteria 3541
8 Ga0068862_100268665 3300005844 Bacteria 1559
9 Ga0081455_10006732 3300005937 Bacteria 12271
10 Ga0081538_10002497 3300005981 Bacteria 17915
11 Ga0075365_10174144 3300006038 Bacteria 1503
12 Ga0075368_10042499 3300006042 Bacteria 1789
13 Ga0075368_10047525 3300006042 Bacteria 1699
14 Ga0075363_100075027 3300006048 Bacteria 1842
15 Ga0075364_10004909 3300006051 Bacteria 7751
16 Ga0075364_10108783 3300006051 Bacteria 1849
17 Ga0075367_10029573 3300006178 Bacteria 3135
18 Ga0075367_10040396 3300006178 Bacteria 2723
19 Ga0075428_100000163 3300006844 Bacteria 61053
20 Ga0075428_100215799 3300006844 Bacteria 2073
21 Ga0075430_100000102 3300006846 Bacteria 51121
22 Ga0075430_100004396 3300006846 Bacteria 11900
23 Ga0075430_100280591 3300006846 Bacteria 1378
24 Ga0075431_100000434 3300006847 Bacteria 34207
25 Ga0075431_100003866 3300006847 Bacteria 14565
26 Ga0075431_100013679 3300006847 Bacteria 8202
27 Ga0075431_100110878 3300006847 Bacteria 2832
28 Ga0075431_100193984 3300006847 Bacteria 2080
29 Ga0075429_100001071 3300006880 Bacteria 21938
30 Ga0075429_100010395 3300006880 Bacteria 8054
31 Ga0075429_100040072 3300006880 Bacteria 4077
32 Ga0075429_100063229 3300006880 Bacteria 3225
33 Ga0111539_10001006 3300009094 Bacteria 36927
34 Ga0105245_10000475 3300009098 Bacteria 36692
35 Ga0105245_10068867 3300009098 Bacteria 3208
36 Ga0114129_10001952 3300009147 Bacteria 28228
37 Ga0114129_10279117 3300009147 Bacteria 2233
38 Ga0114129_10498871 3300009147 Bacteria 1590
39 Ga0105242_10067172 3300009176 Bacteria 2963
40 Ga0157378_10037941 3300013297 Bacteria 4270
41 Ga0213876_10008114 3300021384 Bacteria 5691
42 Ga0207650_10195064 3300025925 Bacteria 1620
43 Ga0207687_10003876 3300025927 Bacteria 10046
44 Ga0207644_10352400 3300025931 Bacteria 1195
45 Ga0207668_10115741 3300025972 Bacteria 2020
46 Ga0207703_10041926 3300026035 Bacteria 3669
47 Ga0207683_10193301 3300026121 Bacteria 1848
48 Ga0268265_10410713 3300028380 Bacteria 1254
49 Ga0268264_10001949 3300028381 Bacteria 18545
50 Ga0265336_10012289 3300028666 Bacteria 2883
51 Ga0265338_10085001 3300028800 Bacteria 2639
52 Ga0265327_10000171 3300031251 Bacteria 139992
53 Ga0265327_10003377 3300031251 Bacteria 15360
54 Ga0316576_10010763 3300031727 Bacteria 5958
55 Ga0316576_10013250 3300031727 Bacteria 5472
56 Ga0316576_10074283 3300031727 Bacteria 2513
57 Ga0316578_10036397 3300031728 Bacteria 2832
58 Ga0316577_10010469 3300031733 Bacteria 5009
59 Ga0307410_10066795 3300031852 Bacteria 2479
60 Ga0307409_100057204 3300031995 Bacteria 3020
61 Ga0307416_100141627 3300032002 Bacteria 2187
62 Ga0307411_10414561 3300032005 Bacteria 1117
63 Ga0373928_0000127 3300035084 Bacteria 14369
64 Ga0373932_0000616 3300035112 Bacteria 10790
65 Ga0316574_0014615 3300035398 Bacteria 4539
66 Ga0316574_0038020 3300035398 Bacteria 2954
67 Ga0316574_0054848 3300035398 Bacteria 2490
68 Ga0316574_0195277 3300035398 Bacteria 1301
69 Ga0373931_0000026 3300035691 Bacteria 124521
70 Ga0373931_0000057 3300035691 Bacteria 56670
71 Ga0316582_0020209 3300036647 Bacteria 3912
72 Ga0316582_0217257 3300036647 Bacteria 1307
73 Ga0316584_0006839 3300036712 Bacteria 7745
74 Ga0316584_0043734 3300036712 Bacteria 3340
75 Ga0316584_0091190 3300036712 Bacteria 2281
76 Ga0395905_0117189 3300037471 Bacteria 2503
77 Ga0400483_020774 3300039062 Bacteria 1949
78 Ga0400483_044120 3300039062 Bacteria 5616
79 Ga0400483_170840 3300039062 Bacteria 2322
80 Ga0436365_1177081 3300039437 Bacteria 7776
81 Ga0436360_0922677 3300039438 Bacteria 4037
82 Ga0436361_0286433 3300039447 Bacteria 4426
83 Ga0436362_0575996 3300039453 Bacteria 5403
84 Ga0436362_0648331 3300039453 Bacteria 2435
85 Ga0439443_007169 3300042003 Bacteria 1546
86 Ga0439448_0022911 3300042005 Bacteria 1944
87 Ga0439450_000306 3300042008 Bacteria 6080
88 Ga0451577_0001086 3300042876 Bacteria 38933
89 Ga0495634_0025721 3300046642 Bacteria 4111
90 Ga0495613_0009769 3300046689 Bacteria 7131
91 Ga0495613_0129617 3300046689 Bacteria 1807
92 Ga0495672_0003183 3300047320 Bacteria 14267
93 Ga0496100_0128743 3300048903 Bacteria 1780
94 Ga0496101_0007964 3300048904 Bacteria 6904
95 Ga0496107_0045012 3300048910 Bacteria 3174
96 Ga0496108_0104040 3300048911 Bacteria 2423
97 Ga0496109_0008306 3300048912 Bacteria 8817
98 Ga0496110_0015037 3300048913 Bacteria 6436
99 Ga0496110_0020401 3300048913 Bacteria 5597
100 Ga0496111_0137192 3300048914 Bacteria 1812
101 Ga0496111_0176717 3300048914 Bacteria 1587
102 Ga0501031_0022325 3300049568 Bacteria 4125
103 Ga0501031_0037532 3300049568 Bacteria 3161
104 Ga0501031_0039433 3300049568 Bacteria 3082
105 Ga0501031_0045261 3300049568 Bacteria 2871
106 Ga0501031_0050382 3300049568 Bacteria 2713
107 Ga0501032_0003660 3300049569 Bacteria 11686
108 Ga0501033_0000777 3300049570 Bacteria 29365
109 Ga0501033_0008031 3300049570 Bacteria 8175
110 Ga0501033_0055287 3300049570 Bacteria 2935
111 Ga0501034_0005921 3300049571 Bacteria 13267
112 Ga0501034_0006682 3300049571 Bacteria 12368
113 Ga0501034_0007553 3300049571 Bacteria 11566
114 Ga0501034_0026675 3300049571 Bacteria 5879
115 Ga0501034_0072199 3300049571 Bacteria 3460
116 Ga0501036_0002536 3300049572 Bacteria 14352
117 Ga0501036_0065566 3300049572 Bacteria 3073
118 Ga0501036_0198437 3300049572 Bacteria 1688
119 Ga0501037_0004185 3300049573 Bacteria 10461
120 Ga0501038_0043567 3300049574 Bacteria 3902
121 Ga0501038_0106259 3300049574 Bacteria 2330
122 Ga0501039_0011341 3300049575 Bacteria 6788
123 Ga0501039_0026571 3300049575 Bacteria 4449
124 Ga0501039_0159179 3300049575 Bacteria 1775
125 Ga0501040_0001810 3300049576 Bacteria 13737
126 Ga0501040_0059964 3300049576 Bacteria 2614
127 Ga0501040_0081801 3300049576 Bacteria 2238
128 Ga0501041_0001295 3300049577 Bacteria 13771
129 Ga0501041_0095150 3300049577 Bacteria 1840
130 Ga0501041_0216060 3300049577 Bacteria 1203
131 Ga0501042_0001339 3300049578 Bacteria 14393
132 Ga0501042_0059486 3300049578 Bacteria 2728
133 Ga0501046_0010288 3300049580 Bacteria 8050
134 Ga0501046_0011483 3300049580 Bacteria 7571
135 Ga0501047_0147877 3300049581 Bacteria 2226
136 Ga0501048_0003743 3300049582 Bacteria 11602
137 Ga0501068_0073047 3300049584 Bacteria 2095
138 Ga0501069_0001422 3300049585 Bacteria 11738
139 Ga0501069_0080164 3300049585 Bacteria 1838
140 Ga0501070_0001142 3300049586 Bacteria 23828
141 Ga0501070_0030856 3300049586 Bacteria 4489
142 Ga0501070_0034360 3300049586 Bacteria 4240
143 Ga0501070_0118600 3300049586 Bacteria 2187
144 Ga0501071_0011515 3300049587 Bacteria 5965
145 Ga0501071_0043301 3300049587 Bacteria 3227
146 Ga0501071_0073718 3300049587 Bacteria 2490
147 Ga0501071_0233207 3300049587 Bacteria 1387
148 Ga0501072_0007138 3300049588 Bacteria 8477
149 Ga0501072_0026662 3300049588 Bacteria 4505
150 Ga0501072_0027686 3300049588 Bacteria 4421
151 Ga0501072_0069982 3300049588 Bacteria 2771
152 Ga0501073_0000464 3300049589 Bacteria 28106
153 Ga0501074_0016728 3300049590 Bacteria 5323
154 Ga0501074_0018800 3300049590 Bacteria 5021
155 Ga0501074_0170387 3300049590 Bacteria 1554
156 Ga0501075_0003281 3300049591 Bacteria 10831
157 Ga0501075_0014252 3300049591 Bacteria 5695
158 Ga0501075_0089527 3300049591 Bacteria 2334
159 Ga0501075_0115884 3300049591 Bacteria 2037
160 Ga0501075_0164219 3300049591 Bacteria 1694
161 Ga0501075_0182245 3300049591 Bacteria 1602
162 Ga0501075_0218721 3300049591 Bacteria 1453
163 Ga0501075_0331092 3300049591 Bacteria 1161
164 Ga0501076_0002375 3300049592 Bacteria 12889
165 Ga0501076_0060383 3300049592 Bacteria 3016
166 Ga0501076_0128943 3300049592 Bacteria 2051
167 Ga0501076_0243138 3300049592 Bacteria 1472
168 Ga0501077_0000696 3300049593 Bacteria 20354
169 Ga0501077_0125990 3300049593 Bacteria 1623
170 Ga0501079_0001107 3300049741 Bacteria 18745
171 Ga0501079_0016934 3300049741 Bacteria 5568
172 Ga0501079_0066432 3300049741 Bacteria 2783
173 Ga0501079_0142405 3300049741 Bacteria 1868
174 Ga0501079_0150765 3300049741 Bacteria 1812
175 Ga0501079_0320081 3300049741 Bacteria 1214
176 Ga0501080_0001561 3300049742 Bacteria 19367
177 Ga0501080_0011791 3300049742 Bacteria 8009
178 Ga0501080_0089905 3300049742 Bacteria 2853
179 Ga0501080_0103114 3300049742 Bacteria 2646
180 Ga0501080_0297906 3300049742 Bacteria 1463
181 Ga0501081_0001666 3300049743 Bacteria 13742
182 Ga0501081_0107505 3300049743 Bacteria 1978
183 Ga0501083_0003202 3300049744 Bacteria 11402
184 Ga0501083_0011279 3300049744 Bacteria 6268
185 Ga0501083_0029566 3300049744 Bacteria 3767
186 Ga0501083_0041748 3300049744 Bacteria 3111
187 Ga0501035_0112628 3300049822 Bacteria 2384
188 Ga0501044_0033590 3300049823 Bacteria 5389
189 Ga0501045_0001890 3300049824 Bacteria 14186
190 Ga0501045_0010987 3300049824 Bacteria 6344
191 Ga0501045_0023132 3300049824 Bacteria 4453
192 Ga0501045_0030476 3300049824 Bacteria 3904
193 nmdc:mga03683_18382_c1 3300050489 Bacteria 2657
194 nmdc:mga03n38_53627_c1 3300050490 Bacteria 1809
195 nmdc:mga00v17_1559_c1 3300050491 Bacteria 11970
196 nmdc:mga00v17_20826_c1 3300050491 Bacteria 3762
197 nmdc:mga00v17_58027_c1 3300050491 Bacteria 2369
198 nmdc:mga00v17_74264_c1 3300050491 Bacteria 2112
199 nmdc:mga0yw44_19586_c1 3300050492 Bacteria 3734
200 nmdc:mga0yw44_1988_c1 3300050492 Bacteria 8486
201 nmdc:mga0yw44_281311_c1 3300050492 Bacteria 1112
202 nmdc:mga0yw44_3053_c1 3300050492 Bacteria 7328
203 nmdc:mga0yw44_3092_c1 3300050492 Bacteria 7290
204 nmdc:mga05p37_1063_c1 3300050507 Bacteria 31403
205 nmdc:mga05p37_112928_c1 3300050507 Bacteria 3341
206 nmdc:mga09592_13561_c1 3300050508 Bacteria 6657
207 nmdc:mga09592_18345_c1 3300050508 Bacteria 5739
208 nmdc:mga09592_4320_c1 3300050508 Bacteria 11480
209 nmdc:mga0qj67_3101_c1 3300050509 Bacteria 11957
210 nmdc:mga0qj67_3598_c1 3300050509 Bacteria 11186
211 nmdc:mga06r32_159306_c1 3300050510 Bacteria 2239
212 nmdc:mga06r32_37776_c1 3300050510 Bacteria 4569
213 nmdc:mga06r32_6457_c1 3300050510 Bacteria 10536
214 nmdc:mga06r32_65201_c1 3300050510 Bacteria 3513
215 nmdc:mga0sz30_72760_c1 3300050516 Bacteria 1481
216 Ga0500566_0000180 3300053094 Bacteria 32425
217 Ga0500568_0000069 3300053139 Bacteria 99921
218 Ga0501084_0001286 3300054114 Bacteria 19770
219 Ga0501084_0003260 3300054114 Bacteria 13131
220 Ga0501084_0039101 3300054114 Bacteria 3968
221 Ga0501084_0103045 3300054114 Bacteria 2397
222 Ga0501084_0133835 3300054114 Bacteria 2087
223 Ga0501084_0206412 3300054114 Bacteria 1658
224 Ga0501084_0230045 3300054114 Bacteria 1565
225 Ga0501082_0010007 3300060353 Bacteria 8177
226 Ga0501082_0010652 3300060353 Bacteria 7915
227 Ga0501082_0051691 3300060353 Bacteria 3542
228 Ga0530510_0003064 3300061734 Bacteria 11474
229 Ga0530510_0011773 3300061734 Bacteria 6138
230 Ga0530510_0026137 3300061734 Bacteria 4176
231 Ga0530510_0047425 3300061734 Bacteria 3104
232 Ga0081538_10000294
233 JGI25407J50210_10000110
234 Ga0070668_100124739
235 Ga0070671_100005222
236 Ga0068855_100435461
237 Ga0068858_100014422
238 Ga0068862_100050917
239 Ga0068862_100268665
240 Ga0081455_10006732
241 Ga0081538_10002497
242 Ga0075365_10174144
243 Ga0075368_10042499
244 Ga0075368_10047525
245 Ga0075363_100075027
246 Ga0075364_10004909
247 Ga0075364_10108783
248 Ga0075367_10029573
249 Ga0075367_10040396
250 Ga0075428_100000163
251 Ga0075428_100215799
252 Ga0075430_100000102
253 Ga0075430_100004396
254 Ga0075430_100280591
255 Ga0075431_100000434
256 Ga0075431_100003866
257 Ga0075431_100013679
258 Ga0075431_100110878
259 Ga0075431_100193984
260 Ga0075429_100001071
261 Ga0075429_100010395
262 Ga0075429_100040072
263 Ga0075429_100063229
264 Ga0111539_10001006
265 Ga0105245_10000475
266 Ga0105245_10068867
267 Ga0114129_10001952
268 Ga0114129_10279117
269 Ga0114129_10498871
270 Ga0105242_10067172
271 Ga0157378_10037941
272 Ga0213876_10008114
273 Ga0207650_10195064
274 Ga0207687_10003876
275 Ga0207644_10352400
276 Ga0207668_10115741
277 Ga0207703_10041926
278 Ga0207683_10193301
279 Ga0268265_10410713
280 Ga0268264_10001949
281 Ga0265336_10012289
282 Ga0265338_10085001
283 Ga0265327_10000171
284 Ga0265327_10003377
285 Ga0316576_10010763
286 Ga0316576_10013250
287 Ga0316576_10074283
288 Ga0316578_10036397
289 Ga0316577_10010469
290 Ga0307410_10066795
291 Ga0307409_100057204
292 Ga0307416_100141627
293 Ga0307411_10414561
294 Ga0373928_0000127
295 Ga0373932_0000616
296 Ga0316574_0014615
297 Ga0316574_0038020
298 Ga0316574_0054848
299 Ga0316574_0195277
300 Ga0373931_0000026
301 Ga0373931_0000057
302 Ga0316582_0020209
303 Ga0316582_0217257
304 Ga0316584_0006839
305 Ga0316584_0043734
306 Ga0316584_0091190
307 Ga0395905_0117189
308 Ga0400483_020774
309 Ga0400483_044120
310 Ga0400483_170840
311 Ga0436365_1177081
312 Ga0436360_0922677
313 Ga0436361_0286433
314 Ga0436362_0575996
315 Ga0436362_0648331
316 Ga0439443_007169
317 Ga0439448_0022911
318 Ga0439450_000306
319 Ga0451577_0001086
320 Ga0495634_0025721
321 Ga0495613_0009769
322 Ga0495613_0129617
323 Ga0495672_0003183
324 Ga0496100_0128743
325 Ga0496101_0007964
326 Ga0496107_0045012
327 Ga0496108_0104040
328 Ga0496109_0008306
329 Ga0496110_0015037
330 Ga0496110_0020401
331 Ga0496111_0137192
332 Ga0496111_0176717
333 Ga0501031_0022325
334 Ga0501031_0037532
335 Ga0501031_0039433
336 Ga0501031_0045261
337 Ga0501031_0050382
338 Ga0501032_0003660
339 Ga0501033_0000777
340 Ga0501033_0008031
341 Ga0501033_0055287
342 Ga0501034_0005921
343 Ga0501034_0006682
344 Ga0501034_0007553
345 Ga0501034_0026675
346 Ga0501034_0072199
347 Ga0501036_0002536
348 Ga0501036_0065566
349 Ga0501036_0198437
350 Ga0501037_0004185
351 Ga0501038_0043567
352 Ga0501038_0106259
353 Ga0501039_0011341
354 Ga0501039_0026571
355 Ga0501039_0159179
356 Ga0501040_0001810
357 Ga0501040_0059964
358 Ga0501040_0081801
359 Ga0501041_0001295
360 Ga0501041_0095150
361 Ga0501041_0216060
362 Ga0501042_0001339
363 Ga0501042_0059486
364 Ga0501046_0010288
365 Ga0501046_0011483
366 Ga0501047_0147877
367 Ga0501048_0003743
368 Ga0501068_0073047
369 Ga0501069_0001422
370 Ga0501069_0080164
371 Ga0501070_0001142
372 Ga0501070_0030856
373 Ga0501070_0034360
374 Ga0501070_0118600
375 Ga0501071_0011515
376 Ga0501071_0043301
377 Ga0501071_0073718
378 Ga0501071_0233207
379 Ga0501072_0007138
380 Ga0501072_0026662
381 Ga0501072_0027686
382 Ga0501072_0069982
383 Ga0501073_0000464
384 Ga0501074_0016728
385 Ga0501074_0018800
386 Ga0501074_0170387
387 Ga0501075_0003281
388 Ga0501075_0014252
389 Ga0501075_0089527
390 Ga0501075_0115884
391 Ga0501075_0164219
392 Ga0501075_0182245
393 Ga0501075_0218721
394 Ga0501075_0331092
395 Ga0501076_0002375
396 Ga0501076_0060383
397 Ga0501076_0128943
398 Ga0501076_0243138
399 Ga0501077_0000696
400 Ga0501077_0125990
401 Ga0501079_0001107
402 Ga0501079_0016934
403 Ga0501079_0066432
404 Ga0501079_0142405
405 Ga0501079_0150765
406 Ga0501079_0320081
407 Ga0501080_0001561
408 Ga0501080_0011791
409 Ga0501080_0089905
410 Ga0501080_0103114
411 Ga0501080_0297906
412 Ga0501081_0001666
413 Ga0501081_0107505
414 Ga0501083_0003202
415 Ga0501083_0011279
416 Ga0501083_0029566
417 Ga0501083_0041748
418 Ga0501035_0112628
419 Ga0501044_0033590
420 Ga0501045_0001890
421 Ga0501045_0010987
422 Ga0501045_0023132
423 Ga0501045_0030476
424 nmdc:mga03683_18382_c1
425 nmdc:mga03n38_53627_c1
426 nmdc:mga00v17_1559_c1
427 nmdc:mga00v17_20826_c1
428 nmdc:mga00v17_58027_c1
429 nmdc:mga00v17_74264_c1
430 nmdc:mga0yw44_19586_c1
431 nmdc:mga0yw44_1988_c1
432 nmdc:mga0yw44_281311_c1
433 nmdc:mga0yw44_3053_c1
434 nmdc:mga0yw44_3092_c1
435 nmdc:mga05p37_1063_c1
436 nmdc:mga05p37_112928_c1
437 nmdc:mga09592_13561_c1
438 nmdc:mga09592_18345_c1
439 nmdc:mga09592_4320_c1
440 nmdc:mga0qj67_3101_c1
441 nmdc:mga0qj67_3598_c1
442 nmdc:mga06r32_159306_c1
443 nmdc:mga06r32_37776_c1
444 nmdc:mga06r32_6457_c1
445 nmdc:mga06r32_65201_c1
446 nmdc:mga0sz30_72760_c1
447 Ga0500566_0000180
448 Ga0500568_0000069
449 Ga0501084_0001286
450 Ga0501084_0003260
451 Ga0501084_0039101
452 Ga0501084_0103045
453 Ga0501084_0133835
454 Ga0501084_0206412
455 Ga0501084_0230045
456 Ga0501082_0010007
457 Ga0501082_0010652
458 Ga0501082_0051691
459 Ga0530510_0003064
460 Ga0530510_0011773
461 Ga0530510_0026137
462 Ga0530510_0047425

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02401

LYTB

LytB protein

70

344

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ke8-assembly1.cif.gz_B crystal structure of isph:hmbpp-complex 0.941 20 317
4n7b-assembly1.cif.gz_A structure of the e-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate reductase from plasmodium falciparum 0.9407 17 323
3t0g-assembly1.cif.gz_A isph:hmbpp (substrate) structure of the t167c mutant 0.9407 20 317
3szu-assembly1.cif.gz_A isph:hmbpp complex structure of e126q mutant 0.9395 20 317
3t0f-assembly1.cif.gz_A isph:hmbpp (substrate) structure of the e126d mutant 0.9297 14 317
ID Description Score Start End Superfamily
af_P9WKF9_118_214_3.40.1010.20 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.9833 113 208 3.40.1010.20
4n7bA03 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.9745 113 208 3.40.1010.20
af_P9WKG1_221_305_3.40.1010.20 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.9662 212 292 3.40.1010.20
af_P9WKG1_39_121_3.40.50.11270 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9645 33 112 3.40.50.11270
af_P9WKF9_118_214_3.40.1010.20 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.9635 113 208 3.40.1010.20
ID Description Score Start End GO Terms
AF-A0A3S0E8Y5-F1-model_v4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 0.9891 25 155 GO:0019288
GO:0046872
GO:0050992
GO:0051539
GO:0051745
AF-A0A6I3DPH4-F1-model_v4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) (EC 1.17.7.4) 0.9856 17 355 GO:0016114
GO:0019288
GO:0046872
GO:0050992
GO:0051539
GO:0051745
AF-A0A2D8V5D5-F1-model_v4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) (EC 1.17.7.4) 0.985 17 355 GO:0016114
GO:0019288
GO:0046872
GO:0050992
GO:0051539
GO:0051745
AF-A0A7K0JSR2-F1-model_v4 deleted 0.9846 18 265
AF-A0A3C2DC12-F1-model_v4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 0.978 36 180 GO:0019288
GO:0046872
GO:0050992
GO:0051539
GO:0051745

Map