F342925

General Info

Members Datasets Scaffolds Average Seq Length
230 147 460 328

Family's Representative Sequence

Representative Sequence 3300006852|Ga0075433_10001028|Ga0075433_100010288
Length 388
Sequence VPGAHTVAEVDTAPTRNWALISRPVHTSIGVNTGWKCDKLRKQGGATVSVATGDLISRARAGDGDAFRELTDPHRRELQLHCYRMLGSFQDAEDALQDTLLTAWQGLEGFEGRASLRTWLYRIATNRCLNARRSASRRPKEWDVPAVEPPEPTRLGEVVWLQPFPDALLEGAIDAPLGPEARYELTESISLAFVTALQLLPPRQLAVLILRDVLGFPASEVADMLDSTVESVTSGLKRARANLHRRLPATADREPPPASNSPTEEALVAKFVRAWEAADLDAVVALLTDDVFVSMPPIPFEYEGRDVGARFCANIFGAGRRFDLVPTQANGQPALGAYLRTSTGVCQGVGLFVLTLAGDRICAMTRFDNSVLPWFGLPRSLPCRSPSS

Samples

Sample ID Description Type Environment
1 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
2 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
23 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
27 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
55 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
80 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
82 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
83 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
84 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
85 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
86 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
87 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
88 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
89 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
90 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
94 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
95 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
96 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
97 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
98 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
99 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
100 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
101 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
102 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
103 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
104 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
105 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
106 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
107 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
108 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
109 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
110 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
111 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
112 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
113 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
114 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
115 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
116 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
117 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
122 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
123 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
124 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
125 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
126 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
127 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
128 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
129 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
130 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
131 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
132 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
133 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
134 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
135 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
136 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
137 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
138 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
139 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
140 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
141 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
142 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
143 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
144 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
145 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
146 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
147 2902792274 Mycolicibacterium sp. P9-64 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.13
Metatranscriptomes 0
Isolates 0.87

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.17
Nodule 0
Rhizoplane 8.26
Rhizosphere 87.83
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075433_10001028 3300006852 Bacteria 19896
2 Ga0068868_100042358 3300005338 Bacteria 3553
3 Ga0070668_100092159 3300005347 Bacteria 2389
4 Ga0070671_100020034 3300005355 Bacteria 5449
5 Ga0070709_10004099 3300005434 Bacteria 7857
6 Ga0070709_10033816 3300005434 Bacteria 3095
7 Ga0070714_100012730 3300005435 Bacteria 6721
8 Ga0070714_100032949 3300005435 Bacteria 4329
9 Ga0070714_100060808 3300005435 Bacteria 3243
10 Ga0070713_100063853 3300005436 Bacteria 3089
11 Ga0070713_100113541 3300005436 Bacteria 2365
12 Ga0070710_10001089 3300005437 Bacteria 12860
13 Ga0070700_100089212 3300005441 Bacteria 2008
14 Ga0070708_100015887 3300005445 Bacteria 6228
15 Ga0070708_100023009 3300005445 Bacteria 5292
16 Ga0070706_100000213 3300005467 Bacteria 71491
17 Ga0070706_100118565 3300005467 Bacteria 2466
18 Ga0070707_100255540 3300005468 Bacteria 1705
19 Ga0070698_100020688 3300005471 Bacteria 6900
20 Ga0070698_100033534 3300005471 Bacteria 5317
21 Ga0070698_100059876 3300005471 Bacteria 3844
22 Ga0070698_100100828 3300005471 Bacteria 2859
23 Ga0070684_100241759 3300005535 Bacteria 1649
24 Ga0068856_100008467 3300005614 Bacteria 10010
25 Ga0068852_100117067 3300005616 Bacteria 2433
26 Ga0068852_100239517 3300005616 Bacteria 1733
27 Ga0068859_100116472 3300005617 Bacteria 2737
28 Ga0068861_100022049 3300005719 Bacteria 4583
29 Ga0068863_100180108 3300005841 Bacteria 2029
30 Ga0068863_100204755 3300005841 Bacteria 1899
31 Ga0068858_100068784 3300005842 Bacteria 3282
32 Ga0068860_100067208 3300005843 Bacteria 3407
33 Ga0068860_100217307 3300005843 Bacteria 1855
34 Ga0081455_10002159 3300005937 Bacteria 23470
35 Ga0081455_10139187 3300005937 Bacteria 1887
36 Ga0081538_10000866 3300005981 Bacteria 32660
37 Ga0081538_10002205 3300005981 Bacteria 19305
38 Ga0081538_10003259 3300005981 Bacteria 15425
39 Ga0081538_10015977 3300005981 Bacteria 5781
40 Ga0070717_10048924 3300006028 Bacteria 3469
41 Ga0070717_10079473 3300006028 Bacteria 2750
42 Ga0070717_10145431 3300006028 Bacteria 2047
43 Ga0075363_100038662 3300006048 Bacteria 2510
44 Ga0075432_10006479 3300006058 Bacteria 3983
45 Ga0070716_100058011 3300006173 Bacteria 2226
46 Ga0070716_100096068 3300006173 Bacteria 1805
47 Ga0075366_10005960 3300006195 Bacteria 6634
48 Ga0075428_100143596 3300006844 Bacteria 2594
49 Ga0075428_100321946 3300006844 Bacteria 1661
50 Ga0075430_100050298 3300006846 Bacteria 3515
51 Ga0075431_100002702 3300006847 Bacteria 17194
52 Ga0075431_100024840 3300006847 Bacteria 6144
53 Ga0075431_100056481 3300006847 Bacteria 4049
54 Ga0075433_10010338 3300006852 Bacteria 7486
55 Ga0075433_10011621 3300006852 Bacteria 7090
56 Ga0075434_100014335 3300006871 Bacteria 7576
57 Ga0075434_100028306 3300006871 Bacteria 5504
58 Ga0075436_100017128 3300006914 Bacteria 4959
59 Ga0097620_100116473 3300006931 Bacteria 2737
60 Ga0075435_100007744 3300007076 Bacteria 7675
61 Ga0075435_100097541 3300007076 Bacteria 2432
62 Ga0075435_100142789 3300007076 Bacteria 2009
63 Ga0111539_10089371 3300009094 Bacteria 3620
64 Ga0105245_10015074 3300009098 Bacteria 6735
65 Ga0105245_10124483 3300009098 Bacteria 2411
66 Ga0105245_10188111 3300009098 Bacteria 1976
67 Ga0114129_10037888 3300009147 Bacteria 6804
68 Ga0105243_10177185 3300009148 Bacteria 1851
69 Ga0105242_10189864 3300009176 Bacteria 1818
70 Ga0105248_10085044 3300009177 Bacteria 3560
71 Ga0105249_10029029 3300009553 Bacteria 4995
72 Ga0105249_10042863 3300009553 Bacteria 4116
73 Ga0105249_10416599 3300009553 Bacteria 1376
74 Ga0099796_10011512 3300010159 Bacteria 2470
75 Ga0105239_10212653 3300010375 Bacteria 2168
76 Ga0105239_10374815 3300010375 Bacteria 1609
77 Ga0157370_10060716 3300013104 Bacteria 3588
78 Ga0157369_10089653 3300013105 Bacteria 3283
79 Ga0157374_10002473 3300013296 Bacteria 15598
80 Ga0157374_10021149 3300013296 Bacteria 5783
81 Ga0163162_10026216 3300013306 Bacteria 5761
82 Ga0157375_10080593 3300013308 Bacteria 3294
83 Ga0163163_10002539 3300014325 Bacteria 15453
84 Ga0157380_10064967 3300014326 Bacteria 2931
85 Ga0157379_10071723 3300014968 Bacteria 3098
86 Ga0157379_10080252 3300014968 Bacteria 2923
87 Ga0157376_10020377 3300014969 Bacteria 5128
88 Ga0224572_1000654 3300024225 Bacteria 4352
89 Ga0207692_10000917 3300025898 Bacteria 10657
90 Ga0207692_10038174 3300025898 Bacteria 2354
91 Ga0207710_10017093 3300025900 Bacteria 3074
92 Ga0207699_10000456 3300025906 Bacteria 20867
93 Ga0207699_10049268 3300025906 Bacteria 2479
94 Ga0207684_10000213 3300025910 Bacteria 89549
95 Ga0207684_10032096 3300025910 Bacteria 4466
96 Ga0207684_10098735 3300025910 Bacteria 2494
97 Ga0207684_10218851 3300025910 Bacteria 1643
98 Ga0207693_10006554 3300025915 Bacteria 9631
99 Ga0207693_10136783 3300025915 Bacteria 1926
100 Ga0207663_10069593 3300025916 Bacteria 2264
101 Ga0207663_10129338 3300025916 Bacteria 1742
102 Ga0207657_10026703 3300025919 Bacteria 5299
103 Ga0207646_10094458 3300025922 Bacteria 2678
104 Ga0207646_10204640 3300025922 Bacteria 1783
105 Ga0207687_10017720 3300025927 Bacteria 4694
106 Ga0207687_10147867 3300025927 Bacteria 1789
107 Ga0207664_10003439 3300025929 Bacteria 10552
108 Ga0207664_10040062 3300025929 Bacteria 3640
109 Ga0207664_10058501 3300025929 Bacteria 3066
110 Ga0207664_10302124 3300025929 Bacteria 1408
111 Ga0207706_10069122 3300025933 Bacteria 3106
112 Ga0207709_10091351 3300025935 Bacteria 1991
113 Ga0207665_10000362 3300025939 Bacteria 31478
114 Ga0207689_10185872 3300025942 Bacteria 1714
115 Ga0207712_10065980 3300025961 Bacteria 2586
116 Ga0207712_10161737 3300025961 Bacteria 1741
117 Ga0207668_10043717 3300025972 Bacteria 3043
118 Ga0207677_10023578 3300026023 Bacteria 3805
119 Ga0207677_10100713 3300026023 Bacteria 2125
120 Ga0207703_10103855 3300026035 Bacteria 2413
121 Ga0207703_10105099 3300026035 Bacteria 2400
122 Ga0207639_10066914 3300026041 Bacteria 2794
123 Ga0207678_10028253 3300026067 Bacteria 4897
124 Ga0207641_10028742 3300026088 Bacteria 4597
125 Ga0207641_10071246 3300026088 Bacteria 2989
126 Ga0207676_10026461 3300026095 Bacteria 4316
127 Ga0207676_10036516 3300026095 Bacteria 3739
128 Ga0207675_100069990 3300026118 Bacteria 3279
129 Ga0207683_10015382 3300026121 Bacteria 6515
130 Ga0207428_10002017 3300027907 Bacteria 20514
131 Ga0207428_10005913 3300027907 Bacteria 11331
132 Ga0207428_10238975 3300027907 Bacteria 1358
133 Ga0268264_10258672 3300028381 Bacteria 1620
134 Ga0307516_10021511 3300031730 Bacteria 6633
135 Ga0307413_10126536 3300031824 Bacteria 1741
136 Ga0307407_10044033 3300031903 Bacteria 2513
137 Ga0307407_10117696 3300031903 Bacteria 1679
138 Ga0307416_100020010 3300032002 Bacteria 4763
139 Ga0307416_100131496 3300032002 Bacteria 2254
140 Ga0307415_100066234 3300032126 Bacteria 2520
141 Ga0373930_0027291 3300034816 Bacteria 1156
142 Ga0373934_0067687 3300035086 Bacteria 1427
143 Ga0373940_0008151 3300035088 Bacteria 2395
144 Ga0373932_0006216 3300035112 Bacteria 2822
145 Ga0373931_0070389 3300035691 Bacteria 1908
146 Ga0373931_0147292 3300035691 Bacteria 1370
147 Ga0395899_0016068 3300037312 Bacteria 5707
148 Ga0395899_0170485 3300037312 Bacteria 1533
149 Ga0395900_0009241 3300037418 Bacteria 10106
150 Ga0395900_0198485 3300037418 Bacteria 2031
151 Ga0395898_0017847 3300037466 Bacteria 7240
152 Ga0395898_0084980 3300037466 Bacteria 3050
153 Ga0395901_0003020 3300038443 Bacteria 16970
154 Ga0395901_0077044 3300038443 Bacteria 3480
155 Ga0395901_0158094 3300038443 Bacteria 2380
156 Ga0439450_037639 3300042008 Bacteria 1112
157 Ga0439464_0014994 3300042439 Bacteria 2089
158 Ga0466965_0103941 3300044683 Bacteria 1455
159 Ga0466968_0005679 3300044735 Bacteria 4674
160 Ga0466970_0021033 3300044765 Bacteria 3396
161 Ga0466970_0052899 3300044765 Bacteria 2168
162 Ga0466959_0011776 3300045049 Bacteria 6296
163 Ga0466958_0116076 3300045836 Bacteria 1673
164 Ga0495651_0010028 3300046462 Bacteria 7282
165 Ga0495653_0082532 3300046463 Bacteria 2372
166 Ga0495662_0009474 3300046476 Bacteria 4777
167 Ga0495606_0140183 3300046507 Bacteria 1429
168 Ga0495618_0047481 3300046514 Bacteria 2710
169 Ga0495628_0008555 3300046516 Bacteria 8765
170 Ga0495628_0033946 3300046516 Bacteria 4107
171 Ga0495652_0145729 3300046529 Bacteria 1856
172 Ga0495667_0025815 3300046559 Bacteria 3958
173 Ga0495657_0004605 3300046675 Bacteria 11009
174 Ga0495657_0056855 3300046675 Bacteria 2603
175 Ga0495600_0092882 3300046809 Bacteria 1968
176 Ga0495674_0052457 3300047319 Bacteria 3589
177 Ga0495674_0325451 3300047319 Bacteria 1251
178 Ga0495680_0050478 3300047322 Bacteria 3253
179 Ga0495687_000663 3300047443 Bacteria 39473
180 Ga0495679_038887 3300047446 Bacteria 1487
181 Ga0495602_0090327 3300048088 Bacteria 2544
182 Ga0496100_0038696 3300048903 Bacteria 3024
183 Ga0496102_0233928 3300048905 Bacteria 1732
184 Ga0496103_0106204 3300048906 Bacteria 1781
185 Ga0496104_0024738 3300048907 Bacteria 5528
186 Ga0496104_0158088 3300048907 Bacteria 2175
187 Ga0496105_0102265 3300048908 Bacteria 2366
188 Ga0496105_0142673 3300048908 Bacteria 1971
189 Ga0496107_0088363 3300048910 Bacteria 2262
190 Ga0496108_0115812 3300048911 Bacteria 2295
191 Ga0496108_0139621 3300048911 Bacteria 2087
192 Ga0496109_0042792 3300048912 Bacteria 4105
193 Ga0496109_0128490 3300048912 Bacteria 2364
194 Ga0496110_0012743 3300048913 Bacteria 6923
195 Ga0496110_0012868 3300048913 Bacteria 6895
196 Ga0496111_0018862 3300048914 Bacteria 4783
197 Ga0496111_0351977 3300048914 Bacteria 1090
198 Ga0496112_0018803 3300048915 Bacteria 6512
199 Ga0496113_0131517 3300048916 Bacteria 1964
200 Ga0496114_0111890 3300048917 Bacteria 2340
201 Ga0496119_0031598 3300048922 Bacteria 3546
202 Ga0496126_0258723 3300048929 Bacteria 1448
203 nmdc:mga0k408_207581_c1 3300050493 Bacteria 1170
204 nmdc:mga05p37_200009_c1 3300050507 Bacteria 2421
205 nmdc:mga05p37_64844_c1 3300050507 Bacteria 4495
206 nmdc:mga09592_34240_c1 3300050508 Bacteria 4246
207 nmdc:mga0qj67_11728_c1 3300050509 Bacteria 6577
208 nmdc:mga06r32_101652_c1 3300050510 Bacteria 2822
209 nmdc:mga06r32_24710_c1 3300050510 Bacteria 5581
210 nmdc:mga06r32_90020_c1 3300050510 Bacteria 2997
211 nmdc:mga06r32_9498_c1 3300050510 Bacteria 8781
212 nmdc:mga08y16_66828_c1 3300050511 Bacteria 3752
213 nmdc:mga0n895_11671_c1 3300050512 Bacteria 7850
214 nmdc:mga0n895_243378_c1 3300050512 Bacteria 1826
215 nmdc:mga0n895_35961_c1 3300050512 Bacteria 4779
216 nmdc:mga0n895_3719_c1 3300050512 Bacteria 12341
217 nmdc:mga0rr50_209681_c1 3300050513 Bacteria 1605
218 nmdc:mga0rr50_33369_c1 3300050513 Bacteria 3676
219 nmdc:mga0rr50_35744_c1 3300050513 Bacteria 3571
220 nmdc:mga0rr50_61243_c1 3300050513 Bacteria 2835
221 nmdc:mga08x19_13670_c1 3300050514 Bacteria 4911
222 nmdc:mga0a205_115259_c1 3300050515 Bacteria 2586
223 nmdc:mga0a205_42560_c1 3300050515 Bacteria 4377
224 nmdc:mga0a205_61012_c1 3300050515 Bacteria 3642
225 nmdc:mga0sz30_54663_c1 3300050516 Bacteria 1698
226 Ga0500643_003550 3300053087 Bacteria 7427
227 Ga0590071_002096 3300059421 Bacteria 5097
228 Ga0466962_0157667 3300061719 Bacteria 1103
229 2862181539 2862178590 Bacteria 8583590
230 2902794640 2902792274 Bacteria 7270173
231 Ga0075433_10001028
232 Ga0068868_100042358
233 Ga0070668_100092159
234 Ga0070671_100020034
235 Ga0070709_10004099
236 Ga0070709_10033816
237 Ga0070714_100012730
238 Ga0070714_100032949
239 Ga0070714_100060808
240 Ga0070713_100063853
241 Ga0070713_100113541
242 Ga0070710_10001089
243 Ga0070700_100089212
244 Ga0070708_100015887
245 Ga0070708_100023009
246 Ga0070706_100000213
247 Ga0070706_100118565
248 Ga0070707_100255540
249 Ga0070698_100020688
250 Ga0070698_100033534
251 Ga0070698_100059876
252 Ga0070698_100100828
253 Ga0070684_100241759
254 Ga0068856_100008467
255 Ga0068852_100117067
256 Ga0068852_100239517
257 Ga0068859_100116472
258 Ga0068861_100022049
259 Ga0068863_100180108
260 Ga0068863_100204755
261 Ga0068858_100068784
262 Ga0068860_100067208
263 Ga0068860_100217307
264 Ga0081455_10002159
265 Ga0081455_10139187
266 Ga0081538_10000866
267 Ga0081538_10002205
268 Ga0081538_10003259
269 Ga0081538_10015977
270 Ga0070717_10048924
271 Ga0070717_10079473
272 Ga0070717_10145431
273 Ga0075363_100038662
274 Ga0075432_10006479
275 Ga0070716_100058011
276 Ga0070716_100096068
277 Ga0075366_10005960
278 Ga0075428_100143596
279 Ga0075428_100321946
280 Ga0075430_100050298
281 Ga0075431_100002702
282 Ga0075431_100024840
283 Ga0075431_100056481
284 Ga0075433_10010338
285 Ga0075433_10011621
286 Ga0075434_100014335
287 Ga0075434_100028306
288 Ga0075436_100017128
289 Ga0097620_100116473
290 Ga0075435_100007744
291 Ga0075435_100097541
292 Ga0075435_100142789
293 Ga0111539_10089371
294 Ga0105245_10015074
295 Ga0105245_10124483
296 Ga0105245_10188111
297 Ga0114129_10037888
298 Ga0105243_10177185
299 Ga0105242_10189864
300 Ga0105248_10085044
301 Ga0105249_10029029
302 Ga0105249_10042863
303 Ga0105249_10416599
304 Ga0099796_10011512
305 Ga0105239_10212653
306 Ga0105239_10374815
307 Ga0157370_10060716
308 Ga0157369_10089653
309 Ga0157374_10002473
310 Ga0157374_10021149
311 Ga0163162_10026216
312 Ga0157375_10080593
313 Ga0163163_10002539
314 Ga0157380_10064967
315 Ga0157379_10071723
316 Ga0157379_10080252
317 Ga0157376_10020377
318 Ga0224572_1000654
319 Ga0207692_10000917
320 Ga0207692_10038174
321 Ga0207710_10017093
322 Ga0207699_10000456
323 Ga0207699_10049268
324 Ga0207684_10000213
325 Ga0207684_10032096
326 Ga0207684_10098735
327 Ga0207684_10218851
328 Ga0207693_10006554
329 Ga0207693_10136783
330 Ga0207663_10069593
331 Ga0207663_10129338
332 Ga0207657_10026703
333 Ga0207646_10094458
334 Ga0207646_10204640
335 Ga0207687_10017720
336 Ga0207687_10147867
337 Ga0207664_10003439
338 Ga0207664_10040062
339 Ga0207664_10058501
340 Ga0207664_10302124
341 Ga0207706_10069122
342 Ga0207709_10091351
343 Ga0207665_10000362
344 Ga0207689_10185872
345 Ga0207712_10065980
346 Ga0207712_10161737
347 Ga0207668_10043717
348 Ga0207677_10023578
349 Ga0207677_10100713
350 Ga0207703_10103855
351 Ga0207703_10105099
352 Ga0207639_10066914
353 Ga0207678_10028253
354 Ga0207641_10028742
355 Ga0207641_10071246
356 Ga0207676_10026461
357 Ga0207676_10036516
358 Ga0207675_100069990
359 Ga0207683_10015382
360 Ga0207428_10002017
361 Ga0207428_10005913
362 Ga0207428_10238975
363 Ga0268264_10258672
364 Ga0307516_10021511
365 Ga0307413_10126536
366 Ga0307407_10044033
367 Ga0307407_10117696
368 Ga0307416_100020010
369 Ga0307416_100131496
370 Ga0307415_100066234
371 Ga0373930_0027291
372 Ga0373934_0067687
373 Ga0373940_0008151
374 Ga0373932_0006216
375 Ga0373931_0070389
376 Ga0373931_0147292
377 Ga0395899_0016068
378 Ga0395899_0170485
379 Ga0395900_0009241
380 Ga0395900_0198485
381 Ga0395898_0017847
382 Ga0395898_0084980
383 Ga0395901_0003020
384 Ga0395901_0077044
385 Ga0395901_0158094
386 Ga0439450_037639
387 Ga0439464_0014994
388 Ga0466965_0103941
389 Ga0466968_0005679
390 Ga0466970_0021033
391 Ga0466970_0052899
392 Ga0466959_0011776
393 Ga0466958_0116076
394 Ga0495651_0010028
395 Ga0495653_0082532
396 Ga0495662_0009474
397 Ga0495606_0140183
398 Ga0495618_0047481
399 Ga0495628_0008555
400 Ga0495628_0033946
401 Ga0495652_0145729
402 Ga0495667_0025815
403 Ga0495657_0004605
404 Ga0495657_0056855
405 Ga0495600_0092882
406 Ga0495674_0052457
407 Ga0495674_0325451
408 Ga0495680_0050478
409 Ga0495687_000663
410 Ga0495679_038887
411 Ga0495602_0090327
412 Ga0496100_0038696
413 Ga0496102_0233928
414 Ga0496103_0106204
415 Ga0496104_0024738
416 Ga0496104_0158088
417 Ga0496105_0102265
418 Ga0496105_0142673
419 Ga0496107_0088363
420 Ga0496108_0115812
421 Ga0496108_0139621
422 Ga0496109_0042792
423 Ga0496109_0128490
424 Ga0496110_0012743
425 Ga0496110_0012868
426 Ga0496111_0018862
427 Ga0496111_0351977
428 Ga0496112_0018803
429 Ga0496113_0131517
430 Ga0496114_0111890
431 Ga0496119_0031598
432 Ga0496126_0258723
433 nmdc:mga0k408_207581_c1
434 nmdc:mga05p37_200009_c1
435 nmdc:mga05p37_64844_c1
436 nmdc:mga09592_34240_c1
437 nmdc:mga0qj67_11728_c1
438 nmdc:mga06r32_101652_c1
439 nmdc:mga06r32_24710_c1
440 nmdc:mga06r32_90020_c1
441 nmdc:mga06r32_9498_c1
442 nmdc:mga08y16_66828_c1
443 nmdc:mga0n895_11671_c1
444 nmdc:mga0n895_243378_c1
445 nmdc:mga0n895_35961_c1
446 nmdc:mga0n895_3719_c1
447 nmdc:mga0rr50_209681_c1
448 nmdc:mga0rr50_33369_c1
449 nmdc:mga0rr50_35744_c1
450 nmdc:mga0rr50_61243_c1
451 nmdc:mga08x19_13670_c1
452 nmdc:mga0a205_115259_c1
453 nmdc:mga0a205_42560_c1
454 nmdc:mga0a205_61012_c1
455 nmdc:mga0sz30_54663_c1
456 Ga0500643_003550
457 Ga0590071_002096
458 Ga0466962_0157667
459 2862181539
460 2902794640

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04545

Sigma70_r4

Sigma-70, region 4

196

245

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

70

138

0.95

PF08281

Sigma70_r4_2

Sigma-70, region 4

190

243

0.95

PF12680

SnoaL_2

SnoaL-like domain

268

364

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9531 141 195
6jhe-assembly1.cif.gz_A crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna 0.9429 145 192
5wur-assembly2.cif.gz_B crystal structure of sigw in complex with its anti-sigma rsiw, an oxdized form 0.9265 4 190
5wuq-assembly1.cif.gz_A crystal structure of sigw in complex with its anti-sigma rsiw, a zinc binding form 0.9101 4 190
4lup-assembly2.cif.gz_C crystal structure of the complex formed by region of e. coli sigmae bound to its -10 element non template strand 0.9064 1 89
ID Description Score Start End Superfamily
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9631 141 194 1.10.10.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9616 141 194 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9571 141 194 1.10.10.10
2o8xC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9509 140 188 1.10.10.10
4go1B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.926 147 186 1.10.10.10
ID Description Score Start End GO Terms
AF-C2W6L8-F1-model_v4 deleted 0.9691 1 87
AF-A0A2W6BMY5-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.9342 4 87 GO:0006352
GO:0016987
AF-C2W6L8-F1-model_v4 deleted 0.8989 1 87
AF-A0A385ALT1-F1-model_v4 deleted 0.8865 4 90
AF-A0A1N7LXK8-F1-model_v4 Sigma-70 region 2 0.8726 3 98 GO:0003700
GO:0006352

Map