F342250

General Info

Members Datasets Scaffolds Average Seq Length
229 157 458 194

Family's Representative Sequence

Representative Sequence 3300042122|Ga0450920_016566|Ga0450920_016566_407_1072
Length 221
Sequence MQIDGGLDHRLSIDIVNGKTLKGTSPMSLRYAILALLSVEPMTGYDLAKRFESSVAYVWHAPDSQIYPELRKMTKDALLQAEEVSWGPRGKKTQYRITPAGRVAFREWMNAPVEYSRERDPVHLKAAYLEWTEPSAARDHMQAHIDYHTMRRDQWAEMIAGLRAGTNEMLNKRLAATPEPDRRRTIEYTIFTYEGLVARAETEIEWGRRGLKLIDSLSAPS

Samples

Sample ID Description Type Environment
1 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
8 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
9 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
10 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
11 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
12 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
13 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
14 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
15 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
18 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
19 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
20 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
24 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
25 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
26 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
27 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
28 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
29 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
30 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
31 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
32 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
33 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
34 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
35 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
36 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
37 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
38 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
39 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
40 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
41 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
42 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
43 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
44 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
45 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
46 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
47 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
48 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
49 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
50 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
51 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
52 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
53 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
54 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
55 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
56 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
57 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
58 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
59 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
60 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
61 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
62 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
63 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
64 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
65 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
66 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
67 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
68 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
69 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
70 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
71 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
72 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
73 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
74 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
75 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
76 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
77 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
78 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
79 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
80 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
81 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
85 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
86 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
87 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
88 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
89 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
90 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
91 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
92 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
93 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
94 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
95 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
96 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
97 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
98 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
101 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
102 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
103 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
104 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
114 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
115 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
118 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
119 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
120 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
121 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
122 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
123 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
124 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
125 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
126 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
127 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
128 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
129 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
130 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
131 2582580736 Prauserella sp. Am3 Isolate Unclassified
132 2643221546 Microbacterium sp. Root53 Isolate Unclassified
133 2643221575 Microbacterium sp. Root61 Isolate Unclassified
134 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
135 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
136 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
137 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
138 2808606372 Agromyces sp. 23-23 Isolate Unclassified
139 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
140 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
141 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
142 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
143 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
144 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
145 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
146 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
147 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
148 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
149 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
150 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
151 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
152 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
153 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
154 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
155 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
156 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
157 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.9
Metatranscriptomes 0
Isolates 13.1

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.73
Nodule 0
Rhizoplane 4.37
Rhizosphere 66.38
Stem 0
Stem Tuber 0
Unclassified 0.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0450920_016566 3300042122 Bacteria 1406
2 Ga0065714_10068041 3300005288 Bacteria 5011
3 Ga0070658_10021277 3300005327 Bacteria 5197
4 Ga0070682_100531771 3300005337 Bacteria 916
5 Ga0070675_101326947 3300005354 Bacteria 663
6 Ga0070667_101468664 3300005367 Bacteria 640
7 Ga0068870_10208980 3300005840 Bacteria 1188
8 Ga0075365_10006788 3300006038 Bacteria 6338
9 Ga0075365_10019750 3300006038 Bacteria 4166
10 Ga0075368_10010600 3300006042 Bacteria 3337
11 Ga0075364_10009078 3300006051 Bacteria 5954
12 Ga0075364_10094525 3300006051 Bacteria 1986
13 Ga0075367_10040810 3300006178 Bacteria 2711
14 Ga0075369_10002582 3300006186 Bacteria 6475
15 Ga0075369_10011111 3300006186 Bacteria 3533
16 Ga0075370_10102886 3300006353 Bacteria 1654
17 Ga0105246_10002005 3300011119 Bacteria 12294
18 Ga0157370_10745727 3300013104 Bacteria 892
19 Ga0157369_10146976 3300013105 Bacteria 2492
20 Ga0157369_10798785 3300013105 Bacteria 969
21 Ga0157378_10155252 3300013297 Bacteria 2136
22 Ga0157375_10241814 3300013308 Bacteria 1965
23 Ga0157380_10238858 3300014326 Bacteria 1637
24 Ga0209148_1020602 3300025254 Bacteria 1082
25 Ga0207647_10010713 3300025904 Bacteria 6458
26 Ga0207639_10337728 3300026041 Bacteria 1342
27 Ga0207639_10369411 3300026041 Bacteria 1286
28 Ga0209813_10003066 3300027866 Bacteria 3885
29 Ga0265336_10016657 3300028666 Bacteria 2402
30 Ga0265327_10168754 3300031251 Bacteria 1007
31 Ga0307408_100028580 3300031548 Bacteria 3854
32 Ga0307408_100120022 3300031548 Bacteria 2035
33 Ga0307408_100470776 3300031548 Bacteria 1094
34 Ga0307408_100477691 3300031548 Bacteria 1087
35 Ga0307408_100748524 3300031548 Bacteria 882
36 Ga0307405_10049749 3300031731 Bacteria 2592
37 Ga0307405_10349509 3300031731 Bacteria 1140
38 Ga0307405_10386477 3300031731 Bacteria 1091
39 Ga0307405_10449691 3300031731 Bacteria 1021
40 Ga0307413_10028909 3300031824 Bacteria 3094
41 Ga0307410_10010292 3300031852 Bacteria 5287
42 Ga0307410_10144932 3300031852 Bacteria 1761
43 Ga0307410_10222822 3300031852 Bacteria 1452
44 Ga0307406_10867805 3300031901 Bacteria 766
45 Ga0307407_10159011 3300031903 Bacteria 1477
46 Ga0307407_10643877 3300031903 Unclassified 793
47 Ga0307412_10032369 3300031911 Bacteria 3312
48 Ga0307412_10060613 3300031911 Bacteria 2540
49 Ga0307412_10143566 3300031911 Bacteria 1752
50 Ga0307412_10457065 3300031911 Bacteria 1053
51 Ga0307409_100104110 3300031995 Bacteria 2363
52 Ga0307409_100567648 3300031995 Bacteria 1116
53 Ga0307409_101143347 3300031995 Bacteria 801
54 Ga0307416_100076481 3300032002 Bacteria 2806
55 Ga0307416_100462321 3300032002 Bacteria 1324
56 Ga0307416_100859039 3300032002 Bacteria 1006
57 Ga0307416_101158177 3300032002 Bacteria 878
58 Ga0307414_10607959 3300032004 Bacteria 981
59 Ga0307411_10583702 3300032005 Bacteria 958
60 Ga0307415_100155200 3300032126 Bacteria 1767
61 Ga0307415_100185602 3300032126 Bacteria 1636
62 Ga0307415_100376591 3300032126 Bacteria 1204
63 Ga0307415_100697514 3300032126 Bacteria 916
64 Ga0373953_0151479 3300035117 Bacteria 994
65 Ga0373956_0037045 3300035119 Bacteria 2155
66 Ga0373955_0047652 3300035172 Bacteria 2321
67 Ga0373933_0024772 3300035724 Bacteria 3436
68 Ga0373937_0017240 3300036401 Bacteria 6429
69 Ga0373925_0002077 3300037068 Bacteria 16471
70 Ga0373925_0033896 3300037068 Bacteria 3762
71 Ga0395899_0034151 3300037312 Bacteria 3818
72 Ga0395899_0669659 3300037312 Bacteria 654
73 Ga0395900_0053940 3300037418 Bacteria 4138
74 Ga0395898_0231884 3300037466 Bacteria 1761
75 Ga0395905_0188579 3300037471 Bacteria 1935
76 Ga0395901_0116870 3300038443 Bacteria 2802
77 Ga0395901_0316792 3300038443 Bacteria 1614
78 Ga0439436_0002573 3300041404 Bacteria 5456
79 Ga0439436_0012259 3300041404 Bacteria 2602
80 Ga0439439_0096292 3300041406 Bacteria 812
81 Ga0439466_0061576 3300041411 Bacteria 1208
82 Ga0439465_0178077 3300041413 Bacteria 768
83 Ga0451797_0417340 3300041453 Bacteria 827
84 Ga0451800_0607435 3300041459 Bacteria 827
85 Ga0451841_0281936 3300041498 Bacteria 1537
86 Ga0451853_0081613 3300041512 Bacteria 734
87 Ga0439433_0057983 3300041999 Bacteria 920
88 Ga0439442_000031 3300042002 Bacteria 33018
89 Ga0439442_000146 3300042002 Bacteria 17613
90 Ga0439442_000247 3300042002 Bacteria 13206
91 Ga0439442_000346 3300042002 Bacteria 11028
92 Ga0439449_0034278 3300042007 Bacteria 1890
93 Ga0439449_0050716 3300042007 Bacteria 1535
94 Ga0439462_0008620 3300042015 Bacteria 2575
95 Ga0450920_006226 3300042122 Bacteria 2141
96 Ga0450920_037837 3300042122 Bacteria 959
97 Ga0450920_086807 3300042122 Bacteria 643
98 Ga0450906_042362 3300042145 Bacteria 804
99 Ga0450907_000346 3300042146 Bacteria 14578
100 Ga0439434_0000012 3300042435 Bacteria 46644
101 Ga0450918_000222 3300042531 Bacteria 13036
102 Ga0450918_058606 3300042531 Bacteria 709
103 Ga0466965_0188197 3300044683 Bacteria 1091
104 Ga0495592_0123232 3300046454 Bacteria 1821
105 Ga0495651_0003525 3300046462 Bacteria 11996
106 Ga0495653_0003150 3300046463 Bacteria 13228
107 Ga0495608_0001764 3300046511 Bacteria 15439
108 Ga0495618_0051310 3300046514 Bacteria 2606
109 Ga0495628_0039907 3300046516 Bacteria 3753
110 Ga0495652_0004132 3300046529 Bacteria 14006
111 Ga0495652_0185269 3300046529 Bacteria 1593
112 Ga0495640_0016942 3300046533 Bacteria 5441
113 Ga0495587_0003596 3300046536 Bacteria 10321
114 Ga0495645_0183705 3300046543 Bacteria 1430
115 Ga0495645_0650325 3300046543 Bacteria 644
116 Ga0495667_0003835 3300046559 Bacteria 10099
117 Ga0495635_0005648 3300046663 Bacteria 8711
118 Ga0495657_0003901 3300046675 Bacteria 12000
119 Ga0495599_0016149 3300046678 Bacteria 4633
120 Ga0495646_0008569 3300046680 Bacteria 6495
121 Ga0495600_0012908 3300046809 Bacteria 5235
122 Ga0495604_0002627 3300047317 Bacteria 14425
123 Ga0495674_0029996 3300047319 Bacteria 4948
124 Ga0495680_0003989 3300047322 Bacteria 14256
125 Ga0495680_0141929 3300047322 Bacteria 1757
126 Ga0495684_0008860 3300047471 Bacteria 7774
127 Ga0495602_0044324 3300048088 Bacteria 4036
128 Ga0495602_0662904 3300048088 Bacteria 711
129 Ga0495615_0141366 3300048090 Bacteria 710
130 Ga0496104_0065321 3300048907 Bacteria 3453
131 Ga0496108_0393536 3300048911 Bacteria 1210
132 Ga0496109_0120251 3300048912 Bacteria 2447
133 Ga0496110_0122483 3300048913 Bacteria 2344
134 Ga0496113_0084154 3300048916 Bacteria 2442
135 Ga0496113_0139924 3300048916 Bacteria 1904
136 Ga0496114_0038373 3300048917 Bacteria 3963
137 Ga0496114_0068376 3300048917 Bacteria 2982
138 Ga0496116_0026827 3300048919 Bacteria 4202
139 Ga0496116_0072156 3300048919 Bacteria 2184
140 Ga0496117_0007632 3300048920 Bacteria 10496
141 Ga0496117_0014908 3300048920 Bacteria 6665
142 Ga0496117_0077835 3300048920 Bacteria 2192
143 Ga0496118_0004720 3300048921 Bacteria 15955
144 Ga0496118_0061520 3300048921 Bacteria 2779
145 Ga0496119_0001415 3300048922 Bacteria 29056
146 Ga0496119_0001959 3300048922 Bacteria 23406
147 Ga0496119_0013426 3300048922 Bacteria 6526
148 Ga0496120_0001540 3300048923 Bacteria 27046
149 Ga0496122_0000071 3300048925 Bacteria 222537
150 Ga0496122_0000235 3300048925 Bacteria 124769
151 Ga0496122_0094509 3300048925 Bacteria 2023
152 Ga0496123_0000006 3300048926 Bacteria 647258
153 Ga0496123_0000036 3300048926 Bacteria 265722
154 Ga0496123_0077954 3300048926 Bacteria 2033
155 Ga0496124_0002889 3300048927 Bacteria 21677
156 Ga0496124_0003922 3300048927 Bacteria 17767
157 Ga0496124_0163549 3300048927 Bacteria 1732
158 Ga0496125_0005060 3300048928 Bacteria 14871
159 Ga0496125_0006071 3300048928 Bacteria 13193
160 Ga0496125_0015177 3300048928 Bacteria 7462
161 Ga0496125_0256443 3300048928 Bacteria 1099
162 Ga0496126_0009294 3300048929 Bacteria 10470
163 Ga0496126_0024594 3300048929 Bacteria 5811
164 Ga0496126_0060896 3300048929 Bacteria 3393
165 Ga0496126_0273139 3300048929 Bacteria 1402
166 Ga0501031_0375538 3300049568 Bacteria 920
167 Ga0501032_0001492 3300049569 Bacteria 18678
168 Ga0501032_0365349 3300049569 Bacteria 929
169 Ga0501033_0014957 3300049570 Bacteria 5889
170 Ga0501033_0092963 3300049570 Bacteria 2206
171 Ga0501034_0109460 3300049571 Bacteria 2754
172 Ga0501036_0185996 3300049572 Bacteria 1748
173 Ga0501037_0098903 3300049573 Bacteria 2107
174 Ga0501037_0657087 3300049573 Bacteria 700
175 Ga0501043_0001021 3300049579 Bacteria 24587
176 Ga0501043_0213502 3300049579 Bacteria 1495
177 Ga0501043_0619151 3300049579 Bacteria 798
178 Ga0501047_0002509 3300049581 Bacteria 17498
179 Ga0501047_0093510 3300049581 Bacteria 2886
180 Ga0501047_0151438 3300049581 Bacteria 2195
181 Ga0501070_0051375 3300049586 Bacteria 3422
182 Ga0501202_018707 3300049652 Bacteria 1363
183 Ga0501083_0000109 3300049744 Bacteria 55679
184 Ga0501035_0003330 3300049822 Bacteria 15398
185 Ga0501044_0004127 3300049823 Bacteria 16299
186 nmdc:mga00v17_62904_c1 3300050491 Bacteria 2284
187 nmdc:mga00v17_7128_c1 3300050491 Bacteria 5957
188 nmdc:mga0yw44_1509_c1 3300050492 Bacteria 9295
189 nmdc:mga06z11_181217_c1 3300050494 Bacteria 1215
190 nmdc:mga04h51_2836_c1 3300050495 Bacteria 4151
191 nmdc:mga07m45_63043_c1 3300050496 Bacteria 2102
192 nmdc:mga0sz30_6424_c1 3300050516 Bacteria 4362
193 Ga0495601_0043322 3300053077 Bacteria 2827
194 Ga0495601_0616440 3300053077 Bacteria 696
195 Ga0495655_0032120 3300053083 Bacteria 1282
196 Ga0495595_0009410 3300053084 Bacteria 4043
197 Ga0495619_0017956 3300053085 Bacteria 4485
198 Ga0500593_035918 3300053117 Bacteria 2218
199 Ga0500616_0000426 3300053153 Bacteria 56192
200 2523385219 2523231044 Bacteria 6434991
201 2537898367 2537561592 Bacteria 4348607
202 2583151501 2582580736 Bacteria 5325865
203 2643752209 2643221546 Bacteria 2910897
204 2643887831 2643221575 Bacteria 4022601
205 2644680778 2643221724 Bacteria 3593515
206 2774395716 2773857762 Bacteria 5971770
207 2774397702 2773857763 Bacteria 4180068
208 2808877107 2808606366 Bacteria 4415912
209 2808900687 2808606372 Bacteria 4649509
210 2809199038 2808606439 Bacteria 5952208
211 2809226056 2808606447 Bacteria 3572005
212 2812325027 2811994872 Bacteria 4121241
213 2812348174 2811994878 Bacteria 5992952
214 2819699685 2818991463 Bacteria 7948711
215 2852632346 2852632344 Bacteria 3463163
216 2866552204 2866552031 Bacteria 5824618
217 2870629031 2870628048 Bacteria 3696012
218 2891968457 2891968417 Bacteria 5821697
219 2897563837 2897561785 Bacteria 3256946
220 2906802392 2906799679 Bacteria 4031749
221 2919052714 2919051321 Bacteria 4210889
222 2939601790 2939598168 Bacteria 4687164
223 2939674990 2939674588 Bacteria 4844420
224 2945944518 2945941187 Bacteria 4682474
225 2945945336 2945941187 Bacteria 4682474
226 2945969480 2945968032 Bacteria 4111363
227 8045831332 8045830549 Bacteria 4444727
228 8054109601 8054107350 Bacteria 5022511
229 8056213173 8056207758 Bacteria 8639239
230 Ga0450920_016566
231 Ga0065714_10068041
232 Ga0070658_10021277
233 Ga0070682_100531771
234 Ga0070675_101326947
235 Ga0070667_101468664
236 Ga0068870_10208980
237 Ga0075365_10006788
238 Ga0075365_10019750
239 Ga0075368_10010600
240 Ga0075364_10009078
241 Ga0075364_10094525
242 Ga0075367_10040810
243 Ga0075369_10002582
244 Ga0075369_10011111
245 Ga0075370_10102886
246 Ga0105246_10002005
247 Ga0157370_10745727
248 Ga0157369_10146976
249 Ga0157369_10798785
250 Ga0157378_10155252
251 Ga0157375_10241814
252 Ga0157380_10238858
253 Ga0209148_1020602
254 Ga0207647_10010713
255 Ga0207639_10337728
256 Ga0207639_10369411
257 Ga0209813_10003066
258 Ga0265336_10016657
259 Ga0265327_10168754
260 Ga0307408_100028580
261 Ga0307408_100120022
262 Ga0307408_100470776
263 Ga0307408_100477691
264 Ga0307408_100748524
265 Ga0307405_10049749
266 Ga0307405_10349509
267 Ga0307405_10386477
268 Ga0307405_10449691
269 Ga0307413_10028909
270 Ga0307410_10010292
271 Ga0307410_10144932
272 Ga0307410_10222822
273 Ga0307406_10867805
274 Ga0307407_10159011
275 Ga0307407_10643877
276 Ga0307412_10032369
277 Ga0307412_10060613
278 Ga0307412_10143566
279 Ga0307412_10457065
280 Ga0307409_100104110
281 Ga0307409_100567648
282 Ga0307409_101143347
283 Ga0307416_100076481
284 Ga0307416_100462321
285 Ga0307416_100859039
286 Ga0307416_101158177
287 Ga0307414_10607959
288 Ga0307411_10583702
289 Ga0307415_100155200
290 Ga0307415_100185602
291 Ga0307415_100376591
292 Ga0307415_100697514
293 Ga0373953_0151479
294 Ga0373956_0037045
295 Ga0373955_0047652
296 Ga0373933_0024772
297 Ga0373937_0017240
298 Ga0373925_0002077
299 Ga0373925_0033896
300 Ga0395899_0034151
301 Ga0395899_0669659
302 Ga0395900_0053940
303 Ga0395898_0231884
304 Ga0395905_0188579
305 Ga0395901_0116870
306 Ga0395901_0316792
307 Ga0439436_0002573
308 Ga0439436_0012259
309 Ga0439439_0096292
310 Ga0439466_0061576
311 Ga0439465_0178077
312 Ga0451797_0417340
313 Ga0451800_0607435
314 Ga0451841_0281936
315 Ga0451853_0081613
316 Ga0439433_0057983
317 Ga0439442_000031
318 Ga0439442_000146
319 Ga0439442_000247
320 Ga0439442_000346
321 Ga0439449_0034278
322 Ga0439449_0050716
323 Ga0439462_0008620
324 Ga0450920_006226
325 Ga0450920_037837
326 Ga0450920_086807
327 Ga0450906_042362
328 Ga0450907_000346
329 Ga0439434_0000012
330 Ga0450918_000222
331 Ga0450918_058606
332 Ga0466965_0188197
333 Ga0495592_0123232
334 Ga0495651_0003525
335 Ga0495653_0003150
336 Ga0495608_0001764
337 Ga0495618_0051310
338 Ga0495628_0039907
339 Ga0495652_0004132
340 Ga0495652_0185269
341 Ga0495640_0016942
342 Ga0495587_0003596
343 Ga0495645_0183705
344 Ga0495645_0650325
345 Ga0495667_0003835
346 Ga0495635_0005648
347 Ga0495657_0003901
348 Ga0495599_0016149
349 Ga0495646_0008569
350 Ga0495600_0012908
351 Ga0495604_0002627
352 Ga0495674_0029996
353 Ga0495680_0003989
354 Ga0495680_0141929
355 Ga0495684_0008860
356 Ga0495602_0044324
357 Ga0495602_0662904
358 Ga0495615_0141366
359 Ga0496104_0065321
360 Ga0496108_0393536
361 Ga0496109_0120251
362 Ga0496110_0122483
363 Ga0496113_0084154
364 Ga0496113_0139924
365 Ga0496114_0038373
366 Ga0496114_0068376
367 Ga0496116_0026827
368 Ga0496116_0072156
369 Ga0496117_0007632
370 Ga0496117_0014908
371 Ga0496117_0077835
372 Ga0496118_0004720
373 Ga0496118_0061520
374 Ga0496119_0001415
375 Ga0496119_0001959
376 Ga0496119_0013426
377 Ga0496120_0001540
378 Ga0496122_0000071
379 Ga0496122_0000235
380 Ga0496122_0094509
381 Ga0496123_0000006
382 Ga0496123_0000036
383 Ga0496123_0077954
384 Ga0496124_0002889
385 Ga0496124_0003922
386 Ga0496124_0163549
387 Ga0496125_0005060
388 Ga0496125_0006071
389 Ga0496125_0015177
390 Ga0496125_0256443
391 Ga0496126_0009294
392 Ga0496126_0024594
393 Ga0496126_0060896
394 Ga0496126_0273139
395 Ga0501031_0375538
396 Ga0501032_0001492
397 Ga0501032_0365349
398 Ga0501033_0014957
399 Ga0501033_0092963
400 Ga0501034_0109460
401 Ga0501036_0185996
402 Ga0501037_0098903
403 Ga0501037_0657087
404 Ga0501043_0001021
405 Ga0501043_0213502
406 Ga0501043_0619151
407 Ga0501047_0002509
408 Ga0501047_0093510
409 Ga0501047_0151438
410 Ga0501070_0051375
411 Ga0501202_018707
412 Ga0501083_0000109
413 Ga0501035_0003330
414 Ga0501044_0004127
415 nmdc:mga00v17_62904_c1
416 nmdc:mga00v17_7128_c1
417 nmdc:mga0yw44_1509_c1
418 nmdc:mga06z11_181217_c1
419 nmdc:mga04h51_2836_c1
420 nmdc:mga07m45_63043_c1
421 nmdc:mga0sz30_6424_c1
422 Ga0495601_0043322
423 Ga0495601_0616440
424 Ga0495655_0032120
425 Ga0495595_0009410
426 Ga0495619_0017956
427 Ga0500593_035918
428 Ga0500616_0000426
429 2523385219
430 2537898367
431 2583151501
432 2643752209
433 2643887831
434 2644680778
435 2774395716
436 2774397702
437 2808877107
438 2808900687
439 2809199038
440 2809226056
441 2812325027
442 2812348174
443 2819699685
444 2852632346
445 2866552204
446 2870629031
447 2891968457
448 2897563837
449 2906802392
450 2919052714
451 2939601790
452 2939674990
453 2945944518
454 2945945336
455 2945969480
456 8045831332
457 8054109601
458 8056213173

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

33

107

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5z7b-assembly1.cif.gz_A crystal structure of the vanr transcription factor in complex with vanillate 0.921 3 190
6lg2-assembly1.cif.gz_B vanr bound to vanillate 0.9181 1 190
6lg2-assembly1.cif.gz_B vanr bound to vanillate 0.9089 1 190
6lg2-assembly1.cif.gz_A vanr bound to vanillate 0.8971 1 190
1xma-assembly1.cif.gz_B-2 structure of a transcriptional regulator from clostridium thermocellum cth-833 0.8961 3 83
ID Description Score Start End Superfamily
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9238 1 88 1.10.10.10
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.914 1 88 1.10.10.10
5x11A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9077 3 91 1.10.10.10
5x13A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8988 3 90 1.10.10.10
3l9fD01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8943 1 88 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0J1ITN8-F1-model_v4 Lineage-specific thermal regulator protein 0.9389 4 83
AF-A0A543FSL9-F1-model_v4 PadR family transcriptional regulator 0.9385 1 192
AF-A0A6H9WQ06-F1-model_v4 PadR family transcriptional regulator 0.9383 1 192
AF-M7NPB8-F1-model_v4 Transcriptional regulator 0.936 1 191
AF-A0A086BJU4-F1-model_v4 Transcription regulator PadR N-terminal domain-containing protein 0.9352 9 192 GO:0005737

Map