F339379
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 226 | 159 | 452 | 617 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2547132424|2548697820 |
| Length | 739 |
| Sequence | HTGNAAQHRAAPAHPGGHDPAAVRAATAAAVGLLRSSQHEQGWWKGELATNVTMDAEDLLLREFLGIATPEVTVPAARWIRSQQRADGTWATFHNGPGDLSTTAEAWVALRLAGDDPAAPHMRAAAEFVRAGGGIEQSRVFTRIWLALFGLWSWDDLPNLPPELILFPSWFPLNIYDWGCWARQTVVPLTVVATLRPCRPLPFGIDELRTGARPAPQASITSLAGIFQRVDTVLHAYAKLPMNIVREHAMRRAAEWILARQEADGGWGGIQPPWVYSLLALHLLGYSLDHPAMRAGIEGLDGFVVREQTPDGEVRRLEACQSPVWDTALATAALLDAGVAQDDPAVLRATDWLLGEQITTGGDWQVRRPGLEPGGWAFEFANDVYPDTDDTAEIVIALHQVAHPDQARLDAAVERAARWTIGMQSADGGWGAFDADNTSVLPTKLPFCDFGAVTDPPSADVTAHVVEMLAVLGRDRERECRRGVRWLLDHQEADGSWFGRWGANHIYGTGAAVPALVAAGTSPRSKSIRAAVRWLENRQNPDGGWGEDLRSYRDSEWIGRGESTPSQTAWALLALLAAEEHDSPATRRGIAWLVRTQRPDGGWDEDHFTGTGFPGDFYINYHLYRLVFPVWALGRYLRRVSDGQIVTAPDAATTHAPDEPANGITGKEQPAHGVSGTGRFARPVSDNGQAAPQNHDNGSTARQNGDKRRGTTPSGGGDADSGRHSRRIRSTGAARRNGS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 2 | 3300003373 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 3 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 5 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 6 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 7 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 12 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 13 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 14 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 16 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 17 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 18 | 3300005981 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 19 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 20 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 21 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 22 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 29 | 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 30 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 31 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 32 | 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 33 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 48 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 49 | 3300035116 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 | Metagenome | Rhizosphere |
| 50 | 3300035119 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 | Metagenome | Rhizosphere |
| 51 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 52 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 53 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 54 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 55 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 56 | 3300042461 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 | Metagenome | Rhizosphere |
| 57 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 58 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 59 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 60 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 61 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 62 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 63 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 64 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 65 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 66 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 67 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 68 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 69 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 71 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046557 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300046680 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300046681 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300048089 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 89 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 90 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 91 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 92 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 93 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 94 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 95 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 96 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 97 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 98 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 99 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 100 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 101 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 102 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 103 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 104 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 105 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 106 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 107 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 108 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 109 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 110 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 111 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 112 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 115 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 117 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 118 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 119 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 120 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 121 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 123 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 124 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 125 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 126 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 127 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 129 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 130 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 131 | 2547132424 | Nocardia nova SH22a | Isolate | Unclassified |
| 132 | 2515154155 | Actinopolymorpha alba DSM 45243 | Isolate | Rhizosphere |
| 133 | 2558860112 | Pseudonocardia acaciae DSM 45401 | Isolate | Unclassified |
| 134 | 2558860280 | Kutzneria sp. 744 | Isolate | Unclassified |
| 135 | 2675903058 | Actinopolymorpha cephalotaxi CPCC 202808 | Isolate | Rhizosphere |
| 136 | 2675903059 | Asanoa hainanensis CGMCC 4.5593 | Isolate | Rhizosphere |
| 137 | 2675903060 | Nonomuraea wenchangensis CGMCC 4.5598 | Isolate | Rhizosphere |
| 138 | 2731639228 | Motilibacter peucedani DSM 45328 | Isolate | Rhizosphere |
| 139 | 2827628540 | Actinopolymorpha cephalotaxi DSM 45117 | Isolate | Rhizosphere |
| 140 | 2856741275 | Microbispora triticiradicis NEAU-HRDPA2-9 | Isolate | Unclassified |
| 141 | 2858902515 | Micromonospora sp. MW-13 | Isolate | Rhizosphere |
| 142 | 2863067949 | Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) | Isolate | Rhizosphere |
| 143 | 2866552031 | Saccharopolyspora rhizosphaerae H219 | Isolate | Unclassified |
| 144 | 2867302475 | Micromonospora globbae WPS1-2 | Isolate | Unclassified |
| 145 | 2867312974 | Micromonospora musae NGC1-4 | Isolate | Unclassified |
| 146 | 2867319477 | Micromonospora musae MS1-9 | Isolate | Unclassified |
| 147 | 2873314349 | Sphaerisporangium siamense DSM 45784 | Isolate | Rhizosphere |
| 148 | 2884693830 | Nonomuraea phyllanthi WYY166 | Isolate | Unclassified |
| 149 | 2891395885 | Microbispora catharanthi CR1-09 | Isolate | Unclassified |
| 150 | 2891554331 | Microbispora sp. CL1-1 | Isolate | Unclassified |
| 151 | 2891562705 | Microbispora tritici MT50 | Isolate | Unclassified |
| 152 | 2895442618 | Nonomuraea phyllanthi PA1-10 | Isolate | Unclassified |
| 153 | 2899370129 | Amycolatopsis alkalitolerans SYSUP0005 | Isolate | Stem Tuber |
| 154 | 2915358134 | Pseudonocardia pini CAP47R | Isolate | Unclassified |
| 155 | 2917736166 | Amycolatopsis dendrobii DR6-1 | Isolate | Unclassified |
| 156 | 2919713450 | Nocardia kruczakiae 4272 | Isolate | Rhizosphere |
| 157 | 8053945823 | Actinomadura terrae OS3-83 | Isolate | Rhizosphere |
| 158 | 8054472261 | Pseudonocardia terrae RS11V-5 | Isolate | Rhizosphere |
| 159 | 8056207758 | Saccharopolyspora indica KCTC 29208 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 84.96 |
| Metatranscriptomes | 2.21 |
| Isolates | 12.83 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0.44 |
| Nodule | 0 |
| Rhizoplane | 5.31 |
| Rhizosphere | 82.74 |
| Stem | 0 |
| Stem Tuber | 0.44 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25406J46586_10011190 | 3300003203 | Bacteria | 3944 |
| 2 | JGI25407J50210_10001775 | 3300003373 | Bacteria | 4959 |
| 3 | Ga0070658_10022793 | 3300005327 | Bacteria | 5025 |
| 4 | Ga0070683_100015343 | 3300005329 | Bacteria | 6726 |
| 5 | Ga0070690_100011770 | 3300005330 | Bacteria | 5129 |
| 6 | Ga0070680_100023251 | 3300005336 | Bacteria | 4942 |
| 7 | Ga0070660_100023880 | 3300005339 | Bacteria | 4534 |
| 8 | Ga0070660_100049892 | 3300005339 | Bacteria | 3219 |
| 9 | Ga0070661_100053212 | 3300005344 | Bacteria | 2962 |
| 10 | Ga0070659_100070779 | 3300005366 | Bacteria | 2772 |
| 11 | Ga0070714_100012534 | 3300005435 | Bacteria | 6774 |
| 12 | Ga0070714_100068709 | 3300005435 | Bacteria | 3058 |
| 13 | Ga0070698_100021002 | 3300005471 | Bacteria | 6841 |
| 14 | Ga0070679_100001761 | 3300005530 | Bacteria | 19505 |
| 15 | Ga0070679_100026730 | 3300005530 | Bacteria | 5674 |
| 16 | Ga0070684_100032364 | 3300005535 | Bacteria | 4456 |
| 17 | Ga0070665_100004921 | 3300005548 | Bacteria | 13860 |
| 18 | Ga0068863_100002455 | 3300005841 | Bacteria | 18421 |
| 19 | Ga0068858_100000007 | 3300005842 | Bacteria | 247001 |
| 20 | Ga0081455_10000113 | 3300005937 | Bacteria | 92043 |
| 21 | Ga0081455_10000297 | 3300005937 | Bacteria | 65930 |
| 22 | Ga0081455_10001431 | 3300005937 | Bacteria | 29530 |
| 23 | Ga0081455_10004770 | 3300005937 | Bacteria | 15061 |
| 24 | Ga0081455_10068564 | 3300005937 | Bacteria | 2951 |
| 25 | Ga0081538_10000236 | 3300005981 | Bacteria | 62334 |
| 26 | Ga0081540_1002423 | 3300005983 | Bacteria | 15199 |
| 27 | Ga0081540_1008267 | 3300005983 | Bacteria | 7288 |
| 28 | Ga0081539_10005800 | 3300005985 | Bacteria | 12286 |
| 29 | Ga0075428_100004380 | 3300006844 | Bacteria | 15583 |
| 30 | Ga0105240_10015062 | 3300009093 | Bacteria | 10526 |
| 31 | Ga0105248_10001229 | 3300009177 | Bacteria | 28583 |
| 32 | Ga0157370_10005224 | 3300013104 | Bacteria | 14624 |
| 33 | Ga0157369_10012481 | 3300013105 | Bacteria | 9639 |
| 34 | Ga0157369_10045069 | 3300013105 | Bacteria | 4798 |
| 35 | Ga0157372_10045483 | 3300013307 | Bacteria | 4870 |
| 36 | Ga0163163_10043331 | 3300014325 | Bacteria | 4412 |
| 37 | Ga0157379_10000003 | 3300014968 | Bacteria | 174612 |
| 38 | Ga0157379_10001608 | 3300014968 | Bacteria | 18631 |
| 39 | Ga0157379_10039053 | 3300014968 | Bacteria | 4235 |
| 40 | Ga0206356_11864742 | 3300020070 | Bacteria | 3559 |
| 41 | Ga0206354_11430674 | 3300020081 | Bacteria | 6048 |
| 42 | Ga0206353_11253328 | 3300020082 | Bacteria | 9373 |
| 43 | Ga0224712_10000265 | 3300022467 | Bacteria | 9599 |
| 44 | Ga0224712_10000395 | 3300022467 | Bacteria | 8535 |
| 45 | Ga0207705_10024086 | 3300025909 | Bacteria | 4344 |
| 46 | Ga0207695_10002357 | 3300025913 | Bacteria | 28088 |
| 47 | Ga0207671_10001397 | 3300025914 | Bacteria | 28073 |
| 48 | Ga0207660_10028743 | 3300025917 | Bacteria | 3806 |
| 49 | Ga0207657_10007857 | 3300025919 | Bacteria | 10889 |
| 50 | Ga0207657_10018732 | 3300025919 | Bacteria | 6596 |
| 51 | Ga0207657_10033049 | 3300025919 | Bacteria | 4667 |
| 52 | Ga0207652_10105996 | 3300025921 | Bacteria | 2488 |
| 53 | Ga0207664_10032834 | 3300025929 | Bacteria | 3982 |
| 54 | Ga0207644_10022137 | 3300025931 | Bacteria | 4339 |
| 55 | Ga0207711_10011028 | 3300025941 | Bacteria | 7509 |
| 56 | Ga0207661_10030972 | 3300025944 | Bacteria | 4126 |
| 57 | Ga0207703_10000001 | 3300026035 | Bacteria | 822925 |
| 58 | Ga0207703_10148394 | 3300026035 | Bacteria | 2042 |
| 59 | Ga0207641_10004790 | 3300026088 | Bacteria | 11664 |
| 60 | Ga0207641_10011570 | 3300026088 | Bacteria | 7242 |
| 61 | Ga0207641_10031632 | 3300026088 | Bacteria | 4389 |
| 62 | Ga0207674_10079596 | 3300026116 | Bacteria | 3281 |
| 63 | Ga0268266_10010371 | 3300028379 | Bacteria | 8145 |
| 64 | Ga0268266_10017367 | 3300028379 | Bacteria | 6140 |
| 65 | Ga0307511_10005380 | 3300030521 | Bacteria | 13032 |
| 66 | Ga0307511_10042156 | 3300030521 | Bacteria | 3839 |
| 67 | Ga0307510_10081462 | 3300033180 | Bacteria | 3138 |
| 68 | Ga0373945_0006544 | 3300035116 | Bacteria | 3764 |
| 69 | Ga0373956_0010411 | 3300035119 | Bacteria | 3812 |
| 70 | Ga0395899_0020836 | 3300037312 | Bacteria | 4972 |
| 71 | Ga0395900_0005367 | 3300037418 | Bacteria | 13432 |
| 72 | Ga0395900_0016711 | 3300037418 | Bacteria | 7486 |
| 73 | Ga0395900_0162483 | 3300037418 | Bacteria | 2277 |
| 74 | Ga0395898_0006096 | 3300037466 | Bacteria | 12936 |
| 75 | Ga0395898_0024344 | 3300037466 | Bacteria | 6106 |
| 76 | Ga0395898_0029635 | 3300037466 | Bacteria | 5478 |
| 77 | Ga0395898_0070206 | 3300037466 | Bacteria | 3387 |
| 78 | Ga0395905_0002577 | 3300037471 | Bacteria | 19967 |
| 79 | Ga0395901_0012498 | 3300038443 | Bacteria | 8615 |
| 80 | Ga0395901_0147711 | 3300038443 | Bacteria | 2470 |
| 81 | Ga0395901_0149982 | 3300038443 | Bacteria | 2450 |
| 82 | Ga0439460_0002812 | 3300042461 | Bacteria | 4191 |
| 83 | Ga0466969_0000716 | 3300044656 | Bacteria | 17970 |
| 84 | Ga0466969_0002737 | 3300044656 | Bacteria | 9427 |
| 85 | Ga0466966_0001071 | 3300044684 | Bacteria | 17476 |
| 86 | Ga0466966_0015198 | 3300044684 | Bacteria | 5093 |
| 87 | Ga0466961_0002475 | 3300044693 | Bacteria | 11457 |
| 88 | Ga0466961_0010424 | 3300044693 | Bacteria | 5930 |
| 89 | Ga0466963_0028165 | 3300044694 | Bacteria | 3604 |
| 90 | Ga0466964_0005414 | 3300044706 | Bacteria | 4738 |
| 91 | Ga0466971_0000279 | 3300044719 | Bacteria | 19515 |
| 92 | Ga0466970_0008950 | 3300044765 | Bacteria | 5048 |
| 93 | Ga0466957_0016466 | 3300044842 | Bacteria | 4325 |
| 94 | Ga0466957_0018330 | 3300044842 | Bacteria | 4111 |
| 95 | Ga0466957_0026124 | 3300044842 | Bacteria | 3463 |
| 96 | Ga0466959_0000323 | 3300045049 | Bacteria | 28214 |
| 97 | Ga0466959_0005262 | 3300045049 | Bacteria | 8837 |
| 98 | Ga0466959_0015746 | 3300045049 | Bacteria | 5515 |
| 99 | Ga0466959_0029982 | 3300045049 | Bacteria | 4029 |
| 100 | Ga0466958_0007882 | 3300045836 | Bacteria | 5886 |
| 101 | Ga0466958_0015096 | 3300045836 | Bacteria | 4420 |
| 102 | Ga0466958_0033913 | 3300045836 | Bacteria | 3043 |
| 103 | Ga0466958_0076367 | 3300045836 | Bacteria | 2056 |
| 104 | Ga0466967_0001663 | 3300045976 | Bacteria | 13176 |
| 105 | Ga0466967_0026437 | 3300045976 | Bacteria | 4808 |
| 106 | Ga0466967_0052034 | 3300045976 | Bacteria | 3592 |
| 107 | Ga0466967_0122011 | 3300045976 | Bacteria | 2409 |
| 108 | Ga0495592_0045195 | 3300046454 | Bacteria | 3287 |
| 109 | Ga0495603_0011997 | 3300046455 | Bacteria | 5244 |
| 110 | Ga0495629_0001300 | 3300046459 | Bacteria | 19631 |
| 111 | Ga0495629_0028590 | 3300046459 | Bacteria | 3956 |
| 112 | Ga0495651_0001135 | 3300046462 | Bacteria | 20579 |
| 113 | Ga0495651_0001849 | 3300046462 | Bacteria | 16376 |
| 114 | Ga0495582_0000017 | 3300046473 | Bacteria | 100348 |
| 115 | Ga0495664_0043053 | 3300046477 | Bacteria | 2675 |
| 116 | Ga0495628_0019078 | 3300046516 | Bacteria | 5672 |
| 117 | Ga0495652_0004938 | 3300046529 | Bacteria | 12642 |
| 118 | Ga0495652_0013125 | 3300046529 | Bacteria | 7459 |
| 119 | Ga0495645_0008444 | 3300046543 | Bacteria | 7195 |
| 120 | Ga0495622_0007962 | 3300046557 | Bacteria | 4914 |
| 121 | Ga0495635_0006875 | 3300046663 | Bacteria | 7947 |
| 122 | Ga0495623_0011415 | 3300046679 | Bacteria | 5750 |
| 123 | Ga0495646_0006295 | 3300046680 | Bacteria | 7531 |
| 124 | Ga0495647_0004965 | 3300046681 | Bacteria | 4355 |
| 125 | Ga0495658_0000865 | 3300046683 | Bacteria | 16276 |
| 126 | Ga0495613_0001645 | 3300046689 | Bacteria | 17020 |
| 127 | Ga0495613_0024811 | 3300046689 | Bacteria | 4468 |
| 128 | Ga0495600_0004754 | 3300046809 | Bacteria | 8149 |
| 129 | Ga0495581_0000268 | 3300047315 | Bacteria | 25083 |
| 130 | Ga0495676_0038697 | 3300047321 | Bacteria | 3958 |
| 131 | Ga0495614_0010729 | 3300048089 | Bacteria | 4035 |
| 132 | Ga0496100_0006048 | 3300048903 | Bacteria | 6572 |
| 133 | Ga0496102_0000157 | 3300048905 | Bacteria | 92353 |
| 134 | Ga0496102_0001127 | 3300048905 | Bacteria | 24516 |
| 135 | Ga0496102_0066413 | 3300048905 | Bacteria | 3306 |
| 136 | Ga0496103_0000106 | 3300048906 | Bacteria | 92315 |
| 137 | Ga0496106_0022755 | 3300048909 | Bacteria | 4657 |
| 138 | Ga0496108_0015402 | 3300048911 | Bacteria | 6237 |
| 139 | Ga0496109_0031435 | 3300048912 | Bacteria | 4764 |
| 140 | Ga0496110_0001655 | 3300048913 | Bacteria | 16356 |
| 141 | Ga0496111_0013222 | 3300048914 | Bacteria | 5611 |
| 142 | Ga0496112_0009030 | 3300048915 | Bacteria | 8953 |
| 143 | Ga0496112_0043703 | 3300048915 | Bacteria | 4387 |
| 144 | Ga0496116_0000724 | 3300048919 | Bacteria | 42184 |
| 145 | Ga0496117_0000364 | 3300048920 | Bacteria | 78857 |
| 146 | Ga0496118_0000069 | 3300048921 | Bacteria | 203439 |
| 147 | Ga0496119_0001883 | 3300048922 | Bacteria | 24189 |
| 148 | Ga0496120_0003284 | 3300048923 | Bacteria | 14904 |
| 149 | Ga0496124_0026412 | 3300048927 | Bacteria | 5235 |
| 150 | Ga0496126_0000372 | 3300048929 | Bacteria | 92561 |
| 151 | Ga0501032_0001794 | 3300049569 | Bacteria | 16946 |
| 152 | Ga0501034_0025307 | 3300049571 | Bacteria | 6041 |
| 153 | Ga0501036_0005136 | 3300049572 | Bacteria | 10578 |
| 154 | Ga0501036_0019055 | 3300049572 | Bacteria | 5757 |
| 155 | Ga0501036_0047408 | 3300049572 | Bacteria | 3639 |
| 156 | Ga0501037_0009028 | 3300049573 | Bacteria | 7307 |
| 157 | Ga0501038_0001733 | 3300049574 | Bacteria | 20297 |
| 158 | Ga0501038_0072742 | 3300049574 | Bacteria | 2913 |
| 159 | Ga0501038_0100472 | 3300049574 | Bacteria | 2410 |
| 160 | Ga0501039_0008182 | 3300049575 | Bacteria | 7972 |
| 161 | Ga0501039_0014590 | 3300049575 | Bacteria | 6016 |
| 162 | Ga0501040_0007464 | 3300049576 | Bacteria | 7083 |
| 163 | Ga0501041_0021256 | 3300049577 | Bacteria | 3888 |
| 164 | Ga0501042_0002622 | 3300049578 | Bacteria | 11062 |
| 165 | Ga0501043_0017032 | 3300049579 | Bacteria | 5698 |
| 166 | Ga0501043_0026812 | 3300049579 | Bacteria | 4521 |
| 167 | Ga0501046_0003736 | 3300049580 | Bacteria | 13934 |
| 168 | Ga0501046_0008890 | 3300049580 | Bacteria | 8723 |
| 169 | Ga0501047_0009714 | 3300049581 | Bacteria | 9097 |
| 170 | Ga0501047_0052917 | 3300049581 | Bacteria | 3924 |
| 171 | Ga0501048_0002995 | 3300049582 | Bacteria | 12897 |
| 172 | Ga0501048_0016122 | 3300049582 | Bacteria | 5509 |
| 173 | Ga0501068_0068740 | 3300049584 | Bacteria | 2159 |
| 174 | Ga0501069_0000041 | 3300049585 | Bacteria | 79028 |
| 175 | Ga0501069_0023214 | 3300049585 | Bacteria | 3381 |
| 176 | Ga0501069_0025333 | 3300049585 | Bacteria | 3241 |
| 177 | Ga0501070_0000013 | 3300049586 | Bacteria | 180554 |
| 178 | Ga0501070_0001997 | 3300049586 | Bacteria | 17938 |
| 179 | Ga0501070_0006861 | 3300049586 | Bacteria | 9690 |
| 180 | Ga0501071_0003890 | 3300049587 | Bacteria | 9410 |
| 181 | Ga0501071_0038956 | 3300049587 | Bacteria | 3399 |
| 182 | Ga0501074_0000986 | 3300049590 | Bacteria | 18465 |
| 183 | Ga0501074_0008272 | 3300049590 | Bacteria | 7544 |
| 184 | Ga0501074_0050488 | 3300049590 | Bacteria | 3003 |
| 185 | Ga0501075_0052231 | 3300049591 | Bacteria | 3073 |
| 186 | Ga0501080_0001129 | 3300049742 | Bacteria | 21963 |
| 187 | Ga0501035_0001793 | 3300049822 | Bacteria | 21695 |
| 188 | Ga0501035_0007930 | 3300049822 | Bacteria | 9912 |
| 189 | Ga0501035_0095975 | 3300049822 | Bacteria | 2606 |
| 190 | Ga0501044_0038518 | 3300049823 | Bacteria | 4992 |
| 191 | Ga0501044_0038715 | 3300049823 | Bacteria | 4979 |
| 192 | Ga0501044_0080223 | 3300049823 | Bacteria | 3305 |
| 193 | Ga0501045_0003710 | 3300049824 | Bacteria | 10503 |
| 194 | Ga0495619_0051689 | 3300053085 | Bacteria | 2716 |
| 195 | Ga0500559_0011516 | 3300053136 | Bacteria | 3777 |
| 196 | Ga0466962_0010114 | 3300061719 | Bacteria | 4528 |
| 197 | Ga0530510_0011578 | 3300061734 | Bacteria | 6191 |
| 198 | 2548697820 | 2547132424 | Bacteria | 8348532 |
| 199 | 2515853664 | 2515154155 | Bacteria | 7985436 |
| 200 | 2558909440 | 2558860112 | Bacteria | 9931328 |
| 201 | 2559431035 | 2558860280 | Bacteria | 11429938 |
| 202 | 2676474214 | 2675903058 | Bacteria | 6822861 |
| 203 | 2676482296 | 2675903059 | Bacteria | 8644972 |
| 204 | 2676493505 | 2675903060 | Bacteria | 10051191 |
| 205 | 2731909386 | 2731639228 | Bacteria | 4187555 |
| 206 | 2827633317 | 2827628540 | Bacteria | 6858585 |
| 207 | 2856748356 | 2856741275 | Bacteria | 8096094 |
| 208 | 2858905146 | 2858902515 | Bacteria | 7086037 |
| 209 | 2863075366 | 2863067949 | Bacteria | 8541735 |
| 210 | 2866556270 | 2866552031 | Bacteria | 5824618 |
| 211 | 2867305579 | 2867302475 | Bacteria | 7087181 |
| 212 | 2867315174 | 2867312974 | Bacteria | 7058875 |
| 213 | 2867319829 | 2867319477 | Bacteria | 7069771 |
| 214 | 2873315642 | 2873314349 | Bacteria | 8512634 |
| 215 | 2884700929 | 2884693830 | Bacteria | 11273186 |
| 216 | 2891398497 | 2891395885 | Bacteria | 9251614 |
| 217 | 2891555637 | 2891554331 | Bacteria | 8812224 |
| 218 | 2891565376 | 2891562705 | Bacteria | 8039471 |
| 219 | 2895452354 | 2895442618 | Bacteria | 11027144 |
| 220 | 2899372873 | 2899370129 | Bacteria | 6781179 |
| 221 | 2915363626 | 2915358134 | Bacteria | 6050864 |
| 222 | 2917743146 | 2917736166 | Bacteria | 9690793 |
| 223 | 2919715993 | 2919713450 | Bacteria | 7431245 |
| 224 | 8053950582 | 8053945823 | Bacteria | 8962862 |
| 225 | 8054474686 | 8054472261 | Bacteria | 7464355 |
| 226 | 8056214685 | 8056207758 | Bacteria | 8639239 |
| 227 | JGI25406J46586_10011190 | |||
| 228 | JGI25407J50210_10001775 | |||
| 229 | Ga0070658_10022793 | |||
| 230 | Ga0070683_100015343 | |||
| 231 | Ga0070690_100011770 | |||
| 232 | Ga0070680_100023251 | |||
| 233 | Ga0070660_100023880 | |||
| 234 | Ga0070660_100049892 | |||
| 235 | Ga0070661_100053212 | |||
| 236 | Ga0070659_100070779 | |||
| 237 | Ga0070714_100012534 | |||
| 238 | Ga0070714_100068709 | |||
| 239 | Ga0070698_100021002 | |||
| 240 | Ga0070679_100001761 | |||
| 241 | Ga0070679_100026730 | |||
| 242 | Ga0070684_100032364 | |||
| 243 | Ga0070665_100004921 | |||
| 244 | Ga0068863_100002455 | |||
| 245 | Ga0068858_100000007 | |||
| 246 | Ga0081455_10000113 | |||
| 247 | Ga0081455_10000297 | |||
| 248 | Ga0081455_10001431 | |||
| 249 | Ga0081455_10004770 | |||
| 250 | Ga0081455_10068564 | |||
| 251 | Ga0081538_10000236 | |||
| 252 | Ga0081540_1002423 | |||
| 253 | Ga0081540_1008267 | |||
| 254 | Ga0081539_10005800 | |||
| 255 | Ga0075428_100004380 | |||
| 256 | Ga0105240_10015062 | |||
| 257 | Ga0105248_10001229 | |||
| 258 | Ga0157370_10005224 | |||
| 259 | Ga0157369_10012481 | |||
| 260 | Ga0157369_10045069 | |||
| 261 | Ga0157372_10045483 | |||
| 262 | Ga0163163_10043331 | |||
| 263 | Ga0157379_10000003 | |||
| 264 | Ga0157379_10001608 | |||
| 265 | Ga0157379_10039053 | |||
| 266 | Ga0206356_11864742 | |||
| 267 | Ga0206354_11430674 | |||
| 268 | Ga0206353_11253328 | |||
| 269 | Ga0224712_10000265 | |||
| 270 | Ga0224712_10000395 | |||
| 271 | Ga0207705_10024086 | |||
| 272 | Ga0207695_10002357 | |||
| 273 | Ga0207671_10001397 | |||
| 274 | Ga0207660_10028743 | |||
| 275 | Ga0207657_10007857 | |||
| 276 | Ga0207657_10018732 | |||
| 277 | Ga0207657_10033049 | |||
| 278 | Ga0207652_10105996 | |||
| 279 | Ga0207664_10032834 | |||
| 280 | Ga0207644_10022137 | |||
| 281 | Ga0207711_10011028 | |||
| 282 | Ga0207661_10030972 | |||
| 283 | Ga0207703_10000001 | |||
| 284 | Ga0207703_10148394 | |||
| 285 | Ga0207641_10004790 | |||
| 286 | Ga0207641_10011570 | |||
| 287 | Ga0207641_10031632 | |||
| 288 | Ga0207674_10079596 | |||
| 289 | Ga0268266_10010371 | |||
| 290 | Ga0268266_10017367 | |||
| 291 | Ga0307511_10005380 | |||
| 292 | Ga0307511_10042156 | |||
| 293 | Ga0307510_10081462 | |||
| 294 | Ga0373945_0006544 | |||
| 295 | Ga0373956_0010411 | |||
| 296 | Ga0395899_0020836 | |||
| 297 | Ga0395900_0005367 | |||
| 298 | Ga0395900_0016711 | |||
| 299 | Ga0395900_0162483 | |||
| 300 | Ga0395898_0006096 | |||
| 301 | Ga0395898_0024344 | |||
| 302 | Ga0395898_0029635 | |||
| 303 | Ga0395898_0070206 | |||
| 304 | Ga0395905_0002577 | |||
| 305 | Ga0395901_0012498 | |||
| 306 | Ga0395901_0147711 | |||
| 307 | Ga0395901_0149982 | |||
| 308 | Ga0439460_0002812 | |||
| 309 | Ga0466969_0000716 | |||
| 310 | Ga0466969_0002737 | |||
| 311 | Ga0466966_0001071 | |||
| 312 | Ga0466966_0015198 | |||
| 313 | Ga0466961_0002475 | |||
| 314 | Ga0466961_0010424 | |||
| 315 | Ga0466963_0028165 | |||
| 316 | Ga0466964_0005414 | |||
| 317 | Ga0466971_0000279 | |||
| 318 | Ga0466970_0008950 | |||
| 319 | Ga0466957_0016466 | |||
| 320 | Ga0466957_0018330 | |||
| 321 | Ga0466957_0026124 | |||
| 322 | Ga0466959_0000323 | |||
| 323 | Ga0466959_0005262 | |||
| 324 | Ga0466959_0015746 | |||
| 325 | Ga0466959_0029982 | |||
| 326 | Ga0466958_0007882 | |||
| 327 | Ga0466958_0015096 | |||
| 328 | Ga0466958_0033913 | |||
| 329 | Ga0466958_0076367 | |||
| 330 | Ga0466967_0001663 | |||
| 331 | Ga0466967_0026437 | |||
| 332 | Ga0466967_0052034 | |||
| 333 | Ga0466967_0122011 | |||
| 334 | Ga0495592_0045195 | |||
| 335 | Ga0495603_0011997 | |||
| 336 | Ga0495629_0001300 | |||
| 337 | Ga0495629_0028590 | |||
| 338 | Ga0495651_0001135 | |||
| 339 | Ga0495651_0001849 | |||
| 340 | Ga0495582_0000017 | |||
| 341 | Ga0495664_0043053 | |||
| 342 | Ga0495628_0019078 | |||
| 343 | Ga0495652_0004938 | |||
| 344 | Ga0495652_0013125 | |||
| 345 | Ga0495645_0008444 | |||
| 346 | Ga0495622_0007962 | |||
| 347 | Ga0495635_0006875 | |||
| 348 | Ga0495623_0011415 | |||
| 349 | Ga0495646_0006295 | |||
| 350 | Ga0495647_0004965 | |||
| 351 | Ga0495658_0000865 | |||
| 352 | Ga0495613_0001645 | |||
| 353 | Ga0495613_0024811 | |||
| 354 | Ga0495600_0004754 | |||
| 355 | Ga0495581_0000268 | |||
| 356 | Ga0495676_0038697 | |||
| 357 | Ga0495614_0010729 | |||
| 358 | Ga0496100_0006048 | |||
| 359 | Ga0496102_0000157 | |||
| 360 | Ga0496102_0001127 | |||
| 361 | Ga0496102_0066413 | |||
| 362 | Ga0496103_0000106 | |||
| 363 | Ga0496106_0022755 | |||
| 364 | Ga0496108_0015402 | |||
| 365 | Ga0496109_0031435 | |||
| 366 | Ga0496110_0001655 | |||
| 367 | Ga0496111_0013222 | |||
| 368 | Ga0496112_0009030 | |||
| 369 | Ga0496112_0043703 | |||
| 370 | Ga0496116_0000724 | |||
| 371 | Ga0496117_0000364 | |||
| 372 | Ga0496118_0000069 | |||
| 373 | Ga0496119_0001883 | |||
| 374 | Ga0496120_0003284 | |||
| 375 | Ga0496124_0026412 | |||
| 376 | Ga0496126_0000372 | |||
| 377 | Ga0501032_0001794 | |||
| 378 | Ga0501034_0025307 | |||
| 379 | Ga0501036_0005136 | |||
| 380 | Ga0501036_0019055 | |||
| 381 | Ga0501036_0047408 | |||
| 382 | Ga0501037_0009028 | |||
| 383 | Ga0501038_0001733 | |||
| 384 | Ga0501038_0072742 | |||
| 385 | Ga0501038_0100472 | |||
| 386 | Ga0501039_0008182 | |||
| 387 | Ga0501039_0014590 | |||
| 388 | Ga0501040_0007464 | |||
| 389 | Ga0501041_0021256 | |||
| 390 | Ga0501042_0002622 | |||
| 391 | Ga0501043_0017032 | |||
| 392 | Ga0501043_0026812 | |||
| 393 | Ga0501046_0003736 | |||
| 394 | Ga0501046_0008890 | |||
| 395 | Ga0501047_0009714 | |||
| 396 | Ga0501047_0052917 | |||
| 397 | Ga0501048_0002995 | |||
| 398 | Ga0501048_0016122 | |||
| 399 | Ga0501068_0068740 | |||
| 400 | Ga0501069_0000041 | |||
| 401 | Ga0501069_0023214 | |||
| 402 | Ga0501069_0025333 | |||
| 403 | Ga0501070_0000013 | |||
| 404 | Ga0501070_0001997 | |||
| 405 | Ga0501070_0006861 | |||
| 406 | Ga0501071_0003890 | |||
| 407 | Ga0501071_0038956 | |||
| 408 | Ga0501074_0000986 | |||
| 409 | Ga0501074_0008272 | |||
| 410 | Ga0501074_0050488 | |||
| 411 | Ga0501075_0052231 | |||
| 412 | Ga0501080_0001129 | |||
| 413 | Ga0501035_0001793 | |||
| 414 | Ga0501035_0007930 | |||
| 415 | Ga0501035_0095975 | |||
| 416 | Ga0501044_0038518 | |||
| 417 | Ga0501044_0038715 | |||
| 418 | Ga0501044_0080223 | |||
| 419 | Ga0501045_0003710 | |||
| 420 | Ga0495619_0051689 | |||
| 421 | Ga0500559_0011516 | |||
| 422 | Ga0466962_0010114 | |||
| 423 | Ga0530510_0011578 | |||
| 424 | 2548697820 | |||
| 425 | 2515853664 | |||
| 426 | 2558909440 | |||
| 427 | 2559431035 | |||
| 428 | 2676474214 | |||
| 429 | 2676482296 | |||
| 430 | 2676493505 | |||
| 431 | 2731909386 | |||
| 432 | 2827633317 | |||
| 433 | 2856748356 | |||
| 434 | 2858905146 | |||
| 435 | 2863075366 | |||
| 436 | 2866556270 | |||
| 437 | 2867305579 | |||
| 438 | 2867315174 | |||
| 439 | 2867319829 | |||
| 440 | 2873315642 | |||
| 441 | 2884700929 | |||
| 442 | 2891398497 | |||
| 443 | 2891555637 | |||
| 444 | 2891565376 | |||
| 445 | 2895452354 | |||
| 446 | 2899372873 | |||
| 447 | 2915363626 | |||
| 448 | 2917743146 | |||
| 449 | 2919715993 | |||
| 450 | 8053950582 | |||
| 451 | 8054474686 | |||
| 452 | 8056214685 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2sqc-assembly1.cif.gz_A | squalene-hopene cyclase from alicyclobacillus acidocaldarius | 0.9548 | 17 | 615 |
| 3sqc-assembly3.cif.gz_C | squalene-hopene cyclase | 0.9532 | 19 | 611 |
| 1gsz-assembly1.cif.gz_A | crystal structure of a squalene cyclase in complex with the potential anticholesteremic drug ro48-8071 | 0.9378 | 20 | 612 |
| 2sqc-assembly1.cif.gz_A | squalene-hopene cyclase from alicyclobacillus acidocaldarius | 0.9288 | 17 | 615 |
| 3sqc-assembly3.cif.gz_C | squalene-hopene cyclase | 0.9182 | 19 | 611 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1gszB02 | Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; | 0.9063 | 43 | 313 | 1.50.10.20 |
| 1gszB02 | Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; | 0.8998 | 43 | 313 | 1.50.10.20 |
| af_A0A1D6KEK0_123_260_1.50.10.20 | Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; | 0.8947 | 46 | 169 | 1.50.10.20 |
| af_A0A1D6IYU4_123_320_1.50.10.20 | Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; | 0.8701 | 44 | 205 | 1.50.10.20 |
| af_A0A1D6GVH8_540_765_1.50.10.20 | Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; | 0.8571 | 421 | 608 | 1.50.10.20 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7K3H9F5-F1-model_v4 | Squalene--hopene cyclase | 0.9889 | 27 | 205 |
GO:0005811
GO:0016104 GO:0016866 |
| AF-A0A382B123-F1-model_v4 | Squalene cyclase N-terminal domain-containing protein | 0.9874 | 16 | 189 |
GO:0005811
GO:0016104 GO:0016866 |
| AF-A0A352UAU8-F1-model_v4 | Squalene cyclase N-terminal domain-containing protein | 0.9838 | 17 | 184 |
GO:0005811
GO:0016104 GO:0016866 |
| AF-A0A661JGF2-F1-model_v4 | Squalene--hopene cyclase | 0.9816 | 20 | 204 |
GO:0005811
GO:0016104 GO:0016866 |
| AF-A0A3N2P747-F1-model_v4 | Squalene--hopene cyclase (EC 5.4.99.17) | 0.9798 | 12 | 614 |
GO:0005811
GO:0016104 GO:0051007 |