F336807

General Info

Members Datasets Scaffolds Average Seq Length
224 173 216 352

Family's Representative Sequence

Representative Sequence 3300025929|Ga0207664_10151663|Ga0207664_101516632
Length 373
Sequence VRRSPSRVIGEMDRTSTRGPSREGKLSARVLKQISTEVLSAAGLSQADAELVADTLVQADLWGHQSHGLLRLQAYVARLKSGAVAVHGKPSLVRELGPIAVLDGANAMGQVVAKAAIDLAVERAKQFGIGAISVRNSNHFGTAMYFTRLAARRGCIGFMATNASPAMPPWGGRTKAVGTNPWSWAAPAGEHVPMILDIANTAVARGKIHLARQRGEQIPEGWALDEQGASTTSPDAALAGVTLPMAGHKGYGIALMMDVLAGVLSGSGFGPDVAGPFQSEKPGRVGHFVLALNIEAFISLEEFDQRQEELIASIKRNKLAEGAAEILYPGEREALLADTSAKNGIDLPGETIAALEVLCAEYGLPEPHHSSRE

Samples

Sample ID Description Type Environment
1 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
2 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
3 2855730933 Achromobacter sp. HZ28 Isolate Nodule
4 2855767633 Achromobacter sp. HZ34 Isolate Nodule
5 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
6 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
7 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
33 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
34 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
52 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
53 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
54 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
55 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
80 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
83 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
84 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
85 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
86 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
87 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
88 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
89 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
90 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
91 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
92 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
93 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
94 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
95 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
96 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
97 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
98 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
99 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
100 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
101 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
102 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
105 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
106 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
107 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
108 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
109 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
110 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
111 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
112 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
113 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
114 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
115 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
116 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
117 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
118 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
119 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
120 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
121 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
122 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
123 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
124 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
125 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
126 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
127 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
128 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
129 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
130 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
131 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
134 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
135 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
136 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
149 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
150 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
151 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
152 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
153 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
154 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
155 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
156 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
157 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
158 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
160 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
161 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
162 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
163 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
164 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
165 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
166 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
167 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
168 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
169 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
170 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
171 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
172 641522639 Methylobacterium sp. 4-46 Isolate Nodule
173 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.43
Metatranscriptomes 0
Isolates 3.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.57
Nodule 1.79
Rhizoplane 2.23
Rhizosphere 83.93
Stem 0
Stem Tuber 0
Unclassified 8.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000567 3300003187 Bacteria 33324
2 Ga0070683_100152124 3300005329 Bacteria 2194
3 Ga0070683_100169086 3300005329 Bacteria 2075
4 Ga0068868_100038819 3300005338 Bacteria 3696
5 Ga0070661_100103257 3300005344 Bacteria 2123
6 Ga0070669_100030620 3300005353 Bacteria 3884
7 Ga0070675_100073891 3300005354 Bacteria 2831
8 Ga0070675_100087443 3300005354 Bacteria 2606
9 Ga0070671_100044111 3300005355 Bacteria 3705
10 Ga0070671_100105979 3300005355 Unclassified 2359
11 Ga0070714_100113642 3300005435 Bacteria 2401
12 Ga0070714_100131646 3300005435 Bacteria 2236
13 Ga0070713_100013959 3300005436 Bacteria 5948
14 Ga0070713_100072290 3300005436 Bacteria 2917
15 Ga0070701_10076281 3300005438 Bacteria 1804
16 Ga0070708_100234099 3300005445 Bacteria 1724
17 Ga0070708_100305853 3300005445 Bacteria 1497
18 Ga0070678_100084799 3300005456 Bacteria 2412
19 Ga0070678_100154262 3300005456 Unclassified 1854
20 Ga0070662_100145963 3300005457 Bacteria 1838
21 Ga0070681_10068923 3300005458 Bacteria 3504
22 Ga0070681_10358892 3300005458 Bacteria 1367
23 Ga0068853_100256751 3300005539 Bacteria 1605
24 Ga0070665_100013039 3300005548 Bacteria 8371
25 Ga0070665_100082532 3300005548 Bacteria 3219
26 Ga0070704_100134670 3300005549 Bacteria 1920
27 Ga0068855_100017424 3300005563 Bacteria 8641
28 Ga0070702_100043800 3300005615 Bacteria 2523
29 Ga0068852_100023641 3300005616 Bacteria 4950
30 Ga0068852_100306821 3300005616 Bacteria 1538
31 Ga0068859_100056731 3300005617 Bacteria 3943
32 Ga0068859_100177359 3300005617 Bacteria 2213
33 Ga0068859_100206949 3300005617 Bacteria 2047
34 Ga0068861_100071610 3300005719 Bacteria 2687
35 Ga0068863_100240681 3300005841 Bacteria 1746
36 Ga0068860_100101558 3300005843 Bacteria 2744
37 Ga0070717_10010030 3300006028 Bacteria 7131
38 Ga0075365_10007037 3300006038 Bacteria 6264
39 Ga0070716_100263383 3300006173 Unclassified 1181
40 Ga0075367_10000710 3300006178 Bacteria 12870
41 Ga0097621_100004688 3300006237 Bacteria 9549
42 Ga0075428_100007618 3300006844 Bacteria 12002
43 Ga0075428_100020768 3300006844 Bacteria 7271
44 Ga0075430_100026120 3300006846 Bacteria 4969
45 Ga0075431_100005545 3300006847 Bacteria 12458
46 Ga0075429_100009733 3300006880 Bacteria 8329
47 Ga0075429_100025727 3300006880 Bacteria 5110
48 Ga0075429_100097413 3300006880 Bacteria 2566
49 Ga0097620_100056730 3300006931 Bacteria 3943
50 Ga0097620_100177356 3300006931 Bacteria 2213
51 Ga0097620_100206948 3300006931 Bacteria 2047
52 Ga0105240_10002606 3300009093 Bacteria 28836
53 Ga0111539_10001041 3300009094 Bacteria 36433
54 Ga0111539_10016570 3300009094 Bacteria 9136
55 Ga0111539_10067147 3300009094 Bacteria 4235
56 Ga0105241_10008925 3300009174 Bacteria 7372
57 Ga0105242_10079310 3300009176 Bacteria 2742
58 Ga0105248_10114567 3300009177 Bacteria 3041
59 Ga0105238_10008440 3300009551 Bacteria 10314
60 Ga0157369_10000679 3300013105 Bacteria 43917
61 Ga0157378_10015810 3300013297 Bacteria 6608
62 Ga0157378_10062971 3300013297 Bacteria 3313
63 Ga0157372_10027299 3300013307 Bacteria 6216
64 Ga0157372_10037341 3300013307 Bacteria 5357
65 Ga0163163_10188965 3300014325 Bacteria 2108
66 Ga0163161_10038606 3300017792 Bacteria 3425
67 Ga0213876_10001275 3300021384 Bacteria 15900
68 Ga0213876_10005807 3300021384 Bacteria 6758
69 Ga0213876_10016667 3300021384 Bacteria 3882
70 Ga0213875_10017862 3300021388 Bacteria 3422
71 Ga0209025_1000040 3300025294 Bacteria 376228
72 Ga0207643_10010243 3300025908 Bacteria 5044
73 Ga0207707_10032127 3300025912 Bacteria 4595
74 Ga0207695_10006317 3300025913 Bacteria 15415
75 Ga0207649_10005004 3300025920 Bacteria 7165
76 Ga0207681_10012250 3300025923 Bacteria 5287
77 Ga0207650_10060858 3300025925 Bacteria 2818
78 Ga0207700_10256872 3300025928 Bacteria 1494
79 Ga0207664_10115763 3300025929 Bacteria 2236
80 Ga0207664_10116482 3300025929 Bacteria 2229
81 Ga0207664_10151663 3300025929 Bacteria 1969
82 Ga0207644_10014512 3300025931 Bacteria 5270
83 Ga0207644_10059330 3300025931 Bacteria 2767
84 Ga0207706_10014747 3300025933 Bacteria 7076
85 Ga0207686_10150522 3300025934 Bacteria 1619
86 Ga0207665_10156219 3300025939 Unclassified 1637
87 Ga0207691_10000834 3300025940 Bacteria 30771
88 Ga0207711_10119120 3300025941 Bacteria 2355
89 Ga0207661_10061646 3300025944 Bacteria 3031
90 Ga0207667_10043729 3300025949 Bacteria 4752
91 Ga0207667_10244002 3300025949 Bacteria 1838
92 Ga0207668_10045447 3300025972 Bacteria 2995
93 Ga0207658_10044894 3300025986 Bacteria 3219
94 Ga0207639_10179036 3300026041 Bacteria 1802
95 Ga0207641_10195310 3300026088 Bacteria 1862
96 Ga0207676_10218805 3300026095 Bacteria 1694
97 Ga0207683_10000337 3300026121 Bacteria 42679
98 Ga0207698_10011780 3300026142 Bacteria 5687
99 Ga0207698_10184699 3300026142 Bacteria 1851
100 Ga0209970_1004659 3300027614 Bacteria 2270
101 Ga0207428_10004837 3300027907 Bacteria 12715
102 Ga0207428_10008923 3300027907 Bacteria 9034
103 Ga0268266_10065443 3300028379 Bacteria 3143
104 Ga0268264_10354179 3300028381 Bacteria 1398
105 Ga0265332_10003852 3300031238 Bacteria 7164
106 Ga0265328_10011900 3300031239 Bacteria 3469
107 Ga0265331_10000697 3300031250 Bacteria 28682
108 Ga0265314_10000442 3300031711 Bacteria 55420
109 Ga0307409_100020215 3300031995 Bacteria 4533
110 Ga0307416_100258284 3300032002 Bacteria 1701
111 Ga0307411_10016084 3300032005 Bacteria 4227
112 Ga0373927_0014632 3300035695 Bacteria 5189
113 Ga0395900_0093204 3300037418 Bacteria 3094
114 Ga0395905_0040373 3300037471 Bacteria 4377
115 Ga0436364_0597929 3300037853 Bacteria 3393
116 Ga0436364_1255426 3300037853 Bacteria 7359
117 Ga0436364_1321448 3300037853 Unclassified 1159
118 Ga0436365_0491857 3300039437 Bacteria 1521
119 Ga0436365_0814359 3300039437 Bacteria 20294
120 Ga0436365_1083514 3300039437 Bacteria 10298
121 Ga0436365_1607614 3300039437 Bacteria 3222
122 Ga0436361_0037599 3300039447 Bacteria 10552
123 Ga0436362_0204855 3300039453 Bacteria 17349
124 Ga0439434_0043803 3300042435 Bacteria 1378
125 Ga0466963_0053021 3300044694 Bacteria 2692
126 Ga0453684_0009931 3300044712 Bacteria 16423
127 Ga0466971_0166817 3300044719 Unclassified 1032
128 Ga0466957_0050033 3300044842 Bacteria 2542
129 Ga0466959_0049475 3300045049 Bacteria 3088
130 Ga0466959_0110821 3300045049 Bacteria 1959
131 Ga0466958_0026878 3300045836 Bacteria 3402
132 Ga0466967_0022100 3300045976 Bacteria 5183
133 Ga0466967_0211139 3300045976 Bacteria 1841
134 Ga0466967_0380604 3300045976 Archaea 1370
135 Ga0495627_004041 3300046453 Bacteria 6254
136 Ga0495591_026922 3300046458 Bacteria 1778
137 Ga0495650_0009284 3300046471 Bacteria 5613
138 Ga0495605_0000032 3300046474 Bacteria 210550
139 Ga0495594_0004361 3300046499 Bacteria 7274
140 Ga0495583_0000052 3300046506 Bacteria 211902
141 Ga0495610_0012257 3300046512 Bacteria 5174
142 Ga0495620_0000019 3300046515 Bacteria 150014
143 Ga0495631_0008096 3300046518 Bacteria 5312
144 Ga0495648_0038571 3300046524 Bacteria 3053
145 Ga0495654_0063462 3300046530 Bacteria 1768
146 Ga0495609_0000032 3300046538 Bacteria 211021
147 Ga0495621_0007211 3300046539 Bacteria 3283
148 Ga0495633_0000040 3300046558 Bacteria 177876
149 Ga0495611_0001522 3300046648 Bacteria 11410
150 Ga0495661_0146039 3300046665 Bacteria 1282
151 Ga0495670_0006927 3300046691 Bacteria 5581
152 Ga0495671_0009267 3300046692 Bacteria 5503
153 Ga0495589_0001596 3300046794 Bacteria 12994
154 Ga0495660_0001839 3300046810 Bacteria 13923
155 Ga0495683_0000011 3300047323 Bacteria 212053
156 Ga0495679_000192 3300047446 Bacteria 54152
157 Ga0495673_0004231 3300047469 Bacteria 9057
158 Ga0496100_0140218 3300048903 Bacteria 1713
159 Ga0496101_0177754 3300048904 Unclassified 1638
160 Ga0496106_0000032 3300048909 Bacteria 134707
161 Ga0496108_0370108 3300048911 Bacteria 1251
162 Ga0496109_0183305 3300048912 Unclassified 1967
163 Ga0496121_0000598 3300048924 Bacteria 67841
164 Ga0496121_0009146 3300048924 Bacteria 11456
165 Ga0496121_0056992 3300048924 Bacteria 3241
166 Ga0496124_0074475 3300048927 Bacteria 2806
167 Ga0496126_0000596 3300048929 Bacteria 68201
168 Ga0495678_000033 3300049459 Bacteria 211804
169 Ga0501033_0010963 3300049570 Bacteria 6946
170 Ga0501034_0072552 3300049571 Bacteria 3451
171 Ga0501036_0030945 3300049572 Bacteria 4523
172 Ga0501037_0120251 3300049573 Bacteria 1889
173 Ga0501038_0041865 3300049574 Bacteria 3993
174 Ga0501038_0145749 3300049574 Bacteria 1933
175 Ga0501039_0016862 3300049575 Bacteria 5599
176 Ga0501040_0036373 3300049576 Bacteria 3341
177 Ga0501041_0021579 3300049577 Bacteria 3858
178 Ga0501043_0000125 3300049579 Bacteria 70733
179 Ga0501043_0331272 3300049579 Bacteria 1159
180 Ga0501046_0000019 3300049580 Bacteria 219823
181 Ga0501046_0012800 3300049580 Bacteria 7136
182 Ga0501047_0000019 3300049581 Bacteria 265794
183 Ga0501047_0046315 3300049581 Bacteria 4203
184 Ga0501048_0000005 3300049582 Bacteria 100079
185 Ga0501048_0053052 3300049582 Bacteria 2885
186 Ga0501069_0016487 3300049585 Bacteria 3969
187 Ga0501071_0022933 3300049587 Bacteria 4355
188 Ga0501072_0002826 3300049588 Bacteria 13025
189 Ga0501073_0000984 3300049589 Bacteria 20546
190 Ga0501075_0053902 3300049591 Bacteria 3024
191 Ga0501076_0000332 3300049592 Bacteria 29226
192 Ga0501077_0022320 3300049593 Bacteria 4008
193 Ga0501079_0007527 3300049741 Bacteria 8240
194 Ga0501079_0027256 3300049741 Bacteria 4380
195 Ga0501080_0080684 3300049742 Bacteria 3024
196 Ga0501081_0001524 3300049743 Bacteria 14217
197 Ga0501035_0007170 3300049822 Bacteria 10428
198 Ga0501035_0313700 3300049822 Bacteria 1319
199 Ga0501044_0020062 3300049823 Bacteria 7136
200 Ga0501045_0003787 3300049824 Bacteria 10401
201 Ga0501045_0021671 3300049824 Bacteria 4599
202 nmdc:mga0yw44_11900_c1 3300050492 Bacteria 4515
203 nmdc:mga06z11_4834_c1 3300050494 Bacteria 5335
204 nmdc:mga09592_48521_c1 3300050508 Bacteria 3579
205 nmdc:mga09592_90363_c1 3300050508 Bacteria 2616
206 nmdc:mga0qj67_21797_c1 3300050509 Bacteria 4915
207 nmdc:mga06r32_243728_c1 3300050510 Bacteria 1785
208 nmdc:mga08y16_12201_c1 3300050511 Bacteria 9033
209 nmdc:mga08y16_2992_c1 3300050511 Bacteria 17427
210 nmdc:mga08y16_59550_c1 3300050511 Bacteria 3988
211 Ga0500618_022928 3300053125 Bacteria 1514
212 Ga0500590_034467 3300053148 Bacteria 2621
213 Ga0501084_0009541 3300054114 Bacteria 8032
214 Ga0501082_0004366 3300060353 Bacteria 12363
215 Ga0530510_0001411 3300061734 Bacteria 16097
216 Ga0530510_0095691 3300061734 Bacteria 2170

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044719 Ga0466971_0166817 Ga0466971_0166817_103_984 277
2 3300037853 Ga0436364_1321448 Ga0436364_1321448_13_996 306
3 3300044694 Ga0466963_0053021 Ga0466963_0053021_589_1584 315
4 3300044842 Ga0466957_0050033 Ga0466957_0050033_162_1157 315
5 3300045836 Ga0466958_0026878 Ga0466958_0026878_187_1182 315
6 3300045976 Ga0466967_0022100 Ga0466967_0022100_2842_3837 315
7 3300037853 Ga0436364_0597929 Ga0436364_0597929_303_1292 317
8 3300005436 Ga0070713_100013959 Ga0070713_1000139593 318
9 3300006028 Ga0070717_10010030 Ga0070717_100100301 318
10 3300006173 Ga0070716_100263383 Ga0070716_1002633831 318
11 3300025928 Ga0207700_10256872 Ga0207700_102568721 318
12 3300025939 Ga0207665_10156219 Ga0207665_101562192 318
13 3300005435 Ga0070714_100131646 Ga0070714_1001316461 320
14 3300025929 Ga0207664_10115763 Ga0207664_101157631 320
15 iso_pu_bacteria 2558860112 2558909089 329
16 3300021388 Ga0213875_10017862 Ga0213875_100178622 330
17 3300037853 Ga0436364_1255426 Ga0436364_1255426_5456_6496 330
18 3300021384 Ga0213876_10005807 Ga0213876_100058077 340
19 3300021384 Ga0213876_10016667 Ga0213876_100166672 340
20 3300039437 Ga0436365_0814359 Ga0436365_0814359_16405_17439 340
21 3300039437 Ga0436365_1083514 Ga0436365_1083514_79_1116 340
22 3300039437 Ga0436365_1607614 Ga0436365_1607614_279_1313 340
23 3300045049 Ga0466959_0049475 Ga0466959_0049475_1828_2868 340
24 3300045049 Ga0466959_0110821 Ga0466959_0110821_239_1273 340
25 3300045976 Ga0466967_0211139 Ga0466967_0211139_487_1524 340
26 3300045976 Ga0466967_0380604 Ga0466967_0380604_45_1079 340
27 iso_pu_bacteria 2895427314 2895434147 341
28 iso_pu_bacteria 2545555834 2545674267 343
29 iso_pu_bacteria 641522639 641643758 343
30 iso_pu_bacteria 8055225921 8055226137 343
31 3300005616 Ga0068852_100306821 Ga0068852_1003068212 346
32 3300009093 Ga0105240_10002606 Ga0105240_100026066 346
33 3300025913 Ga0207695_10006317 Ga0207695_1000631711 346
34 3300025949 Ga0207667_10043729 Ga0207667_100437293 346
35 3300049572 Ga0501036_0030945 Ga0501036_0030945_1065_2108 346
36 3300049574 Ga0501038_0041865 Ga0501038_0041865_1309_2352 346
37 3300049575 Ga0501039_0016862 Ga0501039_0016862_2214_3257 346
38 3300049576 Ga0501040_0036373 Ga0501040_0036373_1558_2601 346
39 3300049577 Ga0501041_0021579 Ga0501041_0021579_253_1296 346
40 3300049579 Ga0501043_0331272 Ga0501043_0331272_83_1126 346
41 3300049580 Ga0501046_0012800 Ga0501046_0012800_5538_6581 346
42 3300049582 Ga0501048_0053052 Ga0501048_0053052_319_1362 346
43 3300049587 Ga0501071_0022933 Ga0501071_0022933_2492_3535 346
44 3300049588 Ga0501072_0002826 Ga0501072_0002826_1874_2917 346
45 3300049591 Ga0501075_0053902 Ga0501075_0053902_1149_2192 346
46 3300049592 Ga0501076_0000332 Ga0501076_0000332_10342_11385 346
47 3300049593 Ga0501077_0022320 Ga0501077_0022320_2890_3933 346
48 3300049741 Ga0501079_0007527 Ga0501079_0007527_6056_7099 346
49 3300049742 Ga0501080_0080684 Ga0501080_0080684_1118_2161 346
50 3300049743 Ga0501081_0001524 Ga0501081_0001524_4938_5981 346
51 3300049824 Ga0501045_0021671 Ga0501045_0021671_3477_4520 346
52 3300054114 Ga0501084_0009541 Ga0501084_0009541_1045_2088 346
53 3300060353 Ga0501082_0004366 Ga0501082_0004366_5941_6984 346
54 3300061734 Ga0530510_0001411 Ga0530510_0001411_12160_13203 346
55 3300006844 Ga0075428_100020768 Ga0075428_1000207684 347
56 3300006880 Ga0075429_100097413 Ga0075429_1000974133 347
57 3300009094 Ga0111539_10001041 Ga0111539_1000104117 347
58 3300027907 Ga0207428_10004837 Ga0207428_100048371 347
59 3300039437 Ga0436365_0491857 Ga0436365_0491857_121_1164 347
60 3300039447 Ga0436361_0037599 Ga0436361_0037599_5594_6649 347
61 3300050508 nmdc:mga09592_90363_c1 nmdc:mga09592_90363_c1_145_1197 347
62 3300050511 nmdc:mga08y16_2992_c1 nmdc:mga08y16_2992_c1_15420_16472 347
63 3300005563 Ga0068855_100017424 Ga0068855_1000174249 348
64 3300013307 Ga0157372_10027299 Ga0157372_100272993 348
65 3300025949 Ga0207667_10244002 Ga0207667_102440022 348
66 3300027614 Ga0209970_1004659 Ga0209970_10046592 348
67 3300042435 Ga0439434_0043803 Ga0439434_0043803_319_1365 348
68 3300044712 Ga0453684_0009931 Ga0453684_0009931_4758_5825 348
69 3300046539 Ga0495621_0007211 Ga0495621_0007211_382_1437 348
70 3300005329 Ga0070683_100169086 Ga0070683_1001690863 349
71 3300005344 Ga0070661_100103257 Ga0070661_1001032572 349
72 3300005353 Ga0070669_100030620 Ga0070669_1000306204 349
73 3300005354 Ga0070675_100087443 Ga0070675_1000874433 349
74 3300005355 Ga0070671_100044111 Ga0070671_1000441112 349
75 3300005456 Ga0070678_100084799 Ga0070678_1000847992 349
76 3300005458 Ga0070681_10068923 Ga0070681_100689232 349
77 3300005539 Ga0068853_100256751 Ga0068853_1002567512 349
78 3300005548 Ga0070665_100013039 Ga0070665_1000130394 349
79 3300005548 Ga0070665_100082532 Ga0070665_1000825323 349
80 3300005549 Ga0070704_100134670 Ga0070704_1001346701 349
81 3300005615 Ga0070702_100043800 Ga0070702_1000438002 349
82 3300005617 Ga0068859_100177359 Ga0068859_1001773592 349
83 3300005617 Ga0068859_100206949 Ga0068859_1002069491 349
84 3300005719 Ga0068861_100071610 Ga0068861_1000716102 349
85 3300005843 Ga0068860_100101558 Ga0068860_1001015583 349
86 3300006038 Ga0075365_10007037 Ga0075365_100070376 349
87 3300006178 Ga0075367_10000710 Ga0075367_100007103 349
88 3300006931 Ga0097620_100177356 Ga0097620_1001773562 349
89 3300006931 Ga0097620_100206948 Ga0097620_1002069481 349
90 3300009174 Ga0105241_10008925 Ga0105241_100089255 349
91 3300009176 Ga0105242_10079310 Ga0105242_100793103 349
92 3300009177 Ga0105248_10114567 Ga0105248_101145673 349
93 3300009551 Ga0105238_10008440 Ga0105238_100084408 349
94 3300013297 Ga0157378_10062971 Ga0157378_100629713 349
95 3300013307 Ga0157372_10037341 Ga0157372_100373417 349
96 3300014325 Ga0163163_10188965 Ga0163163_101889652 349
97 3300017792 Ga0163161_10038606 Ga0163161_100386064 349
98 3300025908 Ga0207643_10010243 Ga0207643_100102435 349
99 3300025912 Ga0207707_10032127 Ga0207707_100321274 349
100 3300025923 Ga0207681_10012250 Ga0207681_100122502 349
101 3300025925 Ga0207650_10060858 Ga0207650_100608582 349
102 3300025931 Ga0207644_10014512 Ga0207644_100145123 349
103 3300025933 Ga0207706_10014747 Ga0207706_100147477 349
104 3300025934 Ga0207686_10150522 Ga0207686_101505222 349
105 3300025941 Ga0207711_10119120 Ga0207711_101191202 349
106 3300025944 Ga0207661_10061646 Ga0207661_100616461 349
107 3300025972 Ga0207668_10045447 Ga0207668_100454473 349
108 3300026041 Ga0207639_10179036 Ga0207639_101790361 349
109 3300026088 Ga0207641_10195310 Ga0207641_101953102 349
110 3300026095 Ga0207676_10218805 Ga0207676_102188052 349
111 3300026142 Ga0207698_10184699 Ga0207698_101846992 349
112 3300028379 Ga0268266_10065443 Ga0268266_100654433 349
113 3300028381 Ga0268264_10354179 Ga0268264_103541792 349
114 3300031238 Ga0265332_10003852 Ga0265332_100038527 349
115 3300031239 Ga0265328_10011900 Ga0265328_100119003 349
116 3300031250 Ga0265331_10000697 Ga0265331_1000069721 349
117 3300031711 Ga0265314_10000442 Ga0265314_100004427 349
118 3300031995 Ga0307409_100020215 Ga0307409_1000202154 349
119 3300049571 Ga0501034_0072552 Ga0501034_0072552_2020_3072 349
120 3300050492 nmdc:mga0yw44_11900_c1 nmdc:mga0yw44_11900_c1_2990_4048 349
121 3300050494 nmdc:mga06z11_4834_c1 nmdc:mga06z11_4834_c1_693_1751 349
122 3300005435 Ga0070714_100113642 Ga0070714_1001136421 350
123 3300005436 Ga0070713_100072290 Ga0070713_1000722902 350
124 3300005438 Ga0070701_10076281 Ga0070701_100762812 350
125 3300005617 Ga0068859_100056731 Ga0068859_1000567313 350
126 3300006844 Ga0075428_100007618 Ga0075428_1000076182 350
127 3300006880 Ga0075429_100009733 Ga0075429_1000097332 350
128 3300006931 Ga0097620_100056730 Ga0097620_1000567303 350
129 3300009094 Ga0111539_10016570 Ga0111539_100165709 350
130 3300025929 Ga0207664_10116482 Ga0207664_101164821 350
131 3300027907 Ga0207428_10008923 Ga0207428_100089232 350
132 3300032002 Ga0307416_100258284 Ga0307416_1002582842 350
133 3300035695 Ga0373927_0014632 Ga0373927_0014632_3647_4708 350
134 3300049585 Ga0501069_0016487 Ga0501069_0016487_1121_2329 350
135 3300049589 Ga0501073_0000984 Ga0501073_0000984_4401_5609 350
136 3300049741 Ga0501079_0027256 Ga0501079_0027256_2229_3437 350
137 3300050508 nmdc:mga09592_48521_c1 nmdc:mga09592_48521_c1_380_1432 350
138 3300050511 nmdc:mga08y16_12201_c1 nmdc:mga08y16_12201_c1_7679_8737 350
139 3300005329 Ga0070683_100152124 Ga0070683_1001521242 351
140 3300005338 Ga0068868_100038819 Ga0068868_1000388193 351
141 3300005354 Ga0070675_100073891 Ga0070675_1000738912 351
142 3300005355 Ga0070671_100105979 Ga0070671_1001059792 351
143 3300005445 Ga0070708_100234099 Ga0070708_1002340992 351
144 3300005445 Ga0070708_100305853 Ga0070708_1003058532 351
145 3300005456 Ga0070678_100154262 Ga0070678_1001542621 351
146 3300005457 Ga0070662_100145963 Ga0070662_1001459632 351
147 3300005458 Ga0070681_10358892 Ga0070681_103588921 351
148 3300005616 Ga0068852_100023641 Ga0068852_1000236414 351
149 3300005841 Ga0068863_100240681 Ga0068863_1002406812 351
150 3300006237 Ga0097621_100004688 Ga0097621_1000046889 351
151 3300006846 Ga0075430_100026120 Ga0075430_1000261202 351
152 3300006847 Ga0075431_100005545 Ga0075431_1000055452 351
153 3300006880 Ga0075429_100025727 Ga0075429_1000257272 351
154 3300013297 Ga0157378_10015810 Ga0157378_100158103 351
155 3300021384 Ga0213876_10001275 Ga0213876_100012752 351
156 3300025920 Ga0207649_10005004 Ga0207649_100050042 351
157 3300025931 Ga0207644_10059330 Ga0207644_100593303 351
158 3300025940 Ga0207691_10000834 Ga0207691_100008348 351
159 3300025986 Ga0207658_10044894 Ga0207658_100448942 351
160 3300026121 Ga0207683_10000337 Ga0207683_100003376 351
161 3300026142 Ga0207698_10011780 Ga0207698_100117803 351
162 3300032005 Ga0307411_10016084 Ga0307411_100160842 351
163 3300037418 Ga0395900_0093204 Ga0395900_0093204_1616_2677 351
164 3300037471 Ga0395905_0040373 Ga0395905_0040373_1851_2912 351
165 3300039453 Ga0436362_0204855 Ga0436362_0204855_2108_3166 351
166 3300048903 Ga0496100_0140218 Ga0496100_0140218_65_1138 351
167 3300048904 Ga0496101_0177754 Ga0496101_0177754_388_1461 351
168 3300048911 Ga0496108_0370108 Ga0496108_0370108_73_1137 351
169 3300048912 Ga0496109_0183305 Ga0496109_0183305_118_1191 351
170 3300049822 Ga0501035_0313700 Ga0501035_0313700_133_1194 351
171 3300050510 nmdc:mga06r32_243728_c1 nmdc:mga06r32_243728_c1_169_1224 351
172 3300061734 Ga0530510_0095691 Ga0530510_0095691_577_1638 351
173 3300009094 Ga0111539_10067147 Ga0111539_100671473 352
174 3300013105 Ga0157369_10000679 Ga0157369_1000067929 352
175 3300049579 Ga0501043_0000125 Ga0501043_0000125_63732_64829 352
176 3300049580 Ga0501046_0000019 Ga0501046_0000019_5103_6200 352
177 3300049581 Ga0501047_0000019 Ga0501047_0000019_135216_136313 352
178 3300049582 Ga0501048_0000005 Ga0501048_0000005_49976_51073 352
179 3300049824 Ga0501045_0003787 Ga0501045_0003787_5080_6177 352
180 3300050511 nmdc:mga08y16_59550_c1 nmdc:mga08y16_59550_c1_2239_3300 352
181 3300048924 Ga0496121_0009146 Ga0496121_0009146_2251_3321 353
182 3300048927 Ga0496124_0074475 Ga0496124_0074475_11_1081 353
183 3300048924 Ga0496121_0000598 Ga0496121_0000598_15323_16405 355
184 3300048929 Ga0496126_0000596 Ga0496126_0000596_15137_16219 355
185 3300050509 nmdc:mga0qj67_21797_c1 nmdc:mga0qj67_21797_c1_3388_4491 355
186 3300048909 Ga0496106_0000032 Ga0496106_0000032_51389_52552 357
187 3300053148 Ga0500590_034467 Ga0500590_034467_1152_2237 358
188 iso_pu_bacteria 2855730933 2855736608 359
189 iso_pu_bacteria 2855767633 2855773545 359
190 3300025929 Ga0207664_10151663 Ga0207664_101516632 360
191 3300046453 Ga0495627_004041 Ga0495627_004041_2864_3955 360
192 3300046458 Ga0495591_026922 Ga0495591_026922_168_1259 360
193 3300046471 Ga0495650_0009284 Ga0495650_0009284_200_1291 360
194 3300046474 Ga0495605_0000032 Ga0495605_0000032_8414_9505 360
195 3300046499 Ga0495594_0004361 Ga0495594_0004361_4100_5191 360
196 3300046506 Ga0495583_0000052 Ga0495583_0000052_9144_10235 360
197 3300046512 Ga0495610_0012257 Ga0495610_0012257_3901_4992 360
198 3300046515 Ga0495620_0000019 Ga0495620_0000019_8466_9557 360
199 3300046518 Ga0495631_0008096 Ga0495631_0008096_1659_2750 360
200 3300046524 Ga0495648_0038571 Ga0495648_0038571_1884_2975 360
201 3300046530 Ga0495654_0063462 Ga0495654_0063462_480_1571 360
202 3300046538 Ga0495609_0000032 Ga0495609_0000032_201519_202610 360
203 3300046558 Ga0495633_0000040 Ga0495633_0000040_167540_168631 360
204 3300046648 Ga0495611_0001522 Ga0495611_0001522_8280_9371 360
205 3300046665 Ga0495661_0146039 Ga0495661_0146039_92_1183 360
206 3300046691 Ga0495670_0006927 Ga0495670_0006927_4033_5124 360
207 3300046692 Ga0495671_0009267 Ga0495671_0009267_735_1826 360
208 3300046794 Ga0495589_0001596 Ga0495589_0001596_3658_4749 360
209 3300046810 Ga0495660_0001839 Ga0495660_0001839_4589_5680 360
210 3300047323 Ga0495683_0000011 Ga0495683_0000011_9267_10358 360
211 3300047446 Ga0495679_000192 Ga0495679_000192_3901_4992 360
212 3300047469 Ga0495673_0004231 Ga0495673_0004231_6668_7759 360
213 3300049459 Ga0495678_000033 Ga0495678_000033_202250_203341 360
214 3300049570 Ga0501033_0010963 Ga0501033_0010963_2776_3861 360
215 3300049573 Ga0501037_0120251 Ga0501037_0120251_556_1641 360
216 3300049574 Ga0501038_0145749 Ga0501038_0145749_337_1422 360
217 3300049581 Ga0501047_0046315 Ga0501047_0046315_2852_3937 360
218 3300049822 Ga0501035_0007170 Ga0501035_0007170_5937_7022 360
219 3300049823 Ga0501044_0020062 Ga0501044_0020062_1816_2901 360
220 3300053125 Ga0500618_022928 Ga0500618_022928_40_1131 360
221 3300048924 Ga0496121_0056992 Ga0496121_0056992_70_1362 364
222 iso_pu_bacteria 2881412998 2881418459 364
223 3300003187 JGI25151J46595_10000567 JGI25151J46595_100005679 371
224 3300025294 Ga0209025_1000040 Ga0209025_100004033 371

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02615

Ldh_2

Malate/L-lactate dehydrogenase

26

356

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1x0a-assembly1.cif.gz_A crystal structure of type ii malate/lactate dehydrogenase from thermus thermophilus hb8 0.9705 26 368
1x0a-assembly1.cif.gz_A crystal structure of type ii malate/lactate dehydrogenase from thermus thermophilus hb8 0.9567 26 368
4fju-assembly1.cif.gz_B crystal structure of ureidoglycolate dehydrogenase in ternary complex with nadh and glyoxylate 0.9456 27 337
3i0p-assembly1.cif.gz_A-2 crystal structure of malate dehydrogenase from entamoeba histolytica 0.9412 26 364
4fju-assembly1.cif.gz_B crystal structure of ureidoglycolate dehydrogenase in ternary complex with nadh and glyoxylate 0.9368 27 337
ID Description Score Start End Superfamily
3uoeB01 Mainly Alpha;Orthogonal Bundle;Hypothetical Oxidoreductase Yiak; Chain: A, domain 1;Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.9997 27 81 1.10.1530.10
af_Q9VP68_93_150_1.10.1530.10 Mainly Alpha;Orthogonal Bundle;Hypothetical Oxidoreductase Yiak; Chain: A, domain 1;Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.991 27 75 1.10.1530.10
1v9nA01 Mainly Alpha;Orthogonal Bundle;Hypothetical Oxidoreductase Yiak; Chain: A, domain 1;Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.9818 22 86 1.10.1530.10
1vbiA01 Mainly Alpha;Orthogonal Bundle;Hypothetical Oxidoreductase Yiak; Chain: A, domain 1;Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.9681 26 81 1.10.1530.10
1wtjA03 Alpha Beta;2-Layer Sandwich;Wheat Germ Agglutinin (Isolectin 2); domain 1;Hypothetical oxidoreductase yiak; domain 3 0.9578 202 246 3.30.60.50
ID Description Score Start End GO Terms
AF-X0S7U4-F1-model_v4 Ldh family oxidoreductase 0.9893 27 153 GO:0016491
AF-A0A496ZN26-F1-model_v4 Ldh family oxidoreductase 0.985 27 137 GO:0016491
AF-A0A0T6B6F5-F1-model_v4 Malate dehydrogenase 0.9838 41 153 GO:0016491
AF-X1UEY0-F1-model_v4 Malate dehydrogenase 0.9834 27 142 GO:0016491
AF-A0A660QQM8-F1-model_v4 Ldh family oxidoreductase 0.9827 27 153 GO:0016491

Feature Viewer

pLDDT pTM Quality
90.31 0.87 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map