F336653

General Info

Members Datasets Scaffolds Average Seq Length
224 142 224 308

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10538318|Ga0114129_105383182
Length 336
Sequence MALYALTAMIFLVTLGLTISGVYFLVAAPASKKKMQTRLAAIEQASFDAPAEELGLLRAEVLSQVPWVNRFLLKLPPVTRVHVFIQQAGMQITAGFLLLICTALGLIAFLIGLLFNLANILLVVAVGAAFAAPLLVVGFKRGRRFSRFEELFPDAIDLLARAVRAGHAFTTALELIGRELPEPVAGEFRITYEQQNFGMPLREALRNFTVRVPLSDVTFFVSALHVQHESGGNLAEILDNLAFVIRERFKILRQVKVHTAQGRMTLYLLTGLGPAAALLMLLVNPEYIGHFFSEPQPKVSILFFSELPLGSVMIAVAIVLQILGYVVIRKIIRIRV

Samples

Sample ID Description Type Environment
1 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
19 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
20 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
21 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
22 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
23 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
24 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
25 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
26 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
27 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
32 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
33 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
39 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
45 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
46 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
47 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
48 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
49 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
50 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
51 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
52 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
59 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
60 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
61 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
65 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
66 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
67 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
68 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
69 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
70 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
103 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
104 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
107 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
108 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
109 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
110 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
111 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
112 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
113 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
114 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
115 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
116 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
117 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
118 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
119 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
120 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
121 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
122 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
123 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
124 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
125 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
126 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
127 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
128 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
129 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
130 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
131 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
132 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
133 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
134 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
135 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
136 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
137 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
138 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
139 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
140 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
141 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
142 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.89
Rhizosphere 98.66
Stem 0
Stem Tuber 0
Unclassified 0.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065704_10107252 3300005289 Bacteria 2060
2 Ga0065712_10002342 3300005290 Bacteria 7707
3 Ga0065707_10097155 3300005295 Bacteria 3200
4 Ga0070676_10006288 3300005328 Bacteria 6343
5 Ga0070676_10098198 3300005328 Bacteria 1805
6 Ga0070690_100158617 3300005330 Bacteria 1548
7 Ga0070670_100006975 3300005331 Bacteria 9576
8 Ga0070670_100196999 3300005331 Bacteria 1750
9 Ga0070677_10037491 3300005333 Bacteria 1891
10 Ga0070677_10038649 3300005333 Bacteria 1869
11 Ga0070677_10045322 3300005333 Bacteria 1754
12 Ga0068869_100095498 3300005334 Bacteria 2243
13 Ga0068869_100214096 3300005334 Bacteria 1524
14 Ga0070689_100167366 3300005340 Bacteria 1780
15 Ga0070661_100123213 3300005344 Bacteria 1943
16 Ga0070669_100054386 3300005353 Bacteria 2932
17 Ga0070669_100216306 3300005353 Bacteria 1514
18 Ga0070669_100285881 3300005353 Bacteria 1322
19 Ga0070669_100401787 3300005353 Unclassified 1121
20 Ga0070675_100001854 3300005354 Bacteria 15588
21 Ga0070675_100004337 3300005354 Bacteria 10818
22 Ga0070675_100054490 3300005354 Bacteria 3291
23 Ga0070675_100073118 3300005354 Bacteria 2846
24 Ga0070675_100128674 3300005354 Bacteria 2156
25 Ga0070675_100150035 3300005354 Bacteria 1998
26 Ga0070671_100017856 3300005355 Bacteria 5751
27 Ga0070671_100032260 3300005355 Bacteria 4331
28 Ga0070674_100062966 3300005356 Bacteria 2594
29 Ga0070673_100003780 3300005364 Bacteria 9494
30 Ga0070673_100144886 3300005364 Bacteria 2007
31 Ga0070673_100160546 3300005364 Bacteria 1911
32 Ga0070673_100191488 3300005364 Bacteria 1757
33 Ga0070688_100007794 3300005365 Bacteria 5784
34 Ga0070667_100086166 3300005367 Bacteria 2694
35 Ga0070709_10000101 3300005434 Bacteria 60664
36 Ga0070709_10000841 3300005434 Bacteria 17175
37 Ga0070714_100013091 3300005435 Bacteria 6639
38 Ga0070713_100002569 3300005436 Bacteria 11862
39 Ga0070710_10058136 3300005437 Bacteria 2193
40 Ga0070700_100066130 3300005441 Bacteria 2294
41 Ga0070708_100193860 3300005445 Bacteria 1901
42 Ga0070663_100052680 3300005455 Bacteria 2903
43 Ga0070678_100052131 3300005456 Bacteria 2969
44 Ga0070681_10060114 3300005458 Bacteria 3779
45 Ga0070681_10282573 3300005458 Bacteria 1570
46 Ga0068867_100004141 3300005459 Bacteria 10190
47 Ga0068867_100216023 3300005459 Bacteria 1543
48 Ga0070706_100513225 3300005467 Bacteria 1115
49 Ga0070699_100199684 3300005518 Bacteria 1778
50 Ga0070684_100198523 3300005535 Bacteria 1827
51 Ga0070697_100166119 3300005536 Unclassified 1866
52 Ga0068853_100153381 3300005539 Bacteria 2074
53 Ga0070672_100037326 3300005543 Bacteria 3706
54 Ga0070672_100049528 3300005543 Bacteria 3269
55 Ga0070672_100106739 3300005543 Bacteria 2278
56 Ga0070664_100049745 3300005564 Bacteria 3545
57 Ga0068854_100048312 3300005578 Bacteria 3036
58 Ga0070702_100007714 3300005615 Bacteria 5167
59 Ga0068859_100097595 3300005617 Bacteria 2991
60 Ga0068864_100043748 3300005618 Bacteria 3835
61 Ga0068866_10005667 3300005718 Bacteria 5172
62 Ga0068858_100022608 3300005842 Bacteria 5864
63 Ga0068858_100047643 3300005842 Bacteria 3973
64 Ga0068858_100101095 3300005842 Bacteria 2689
65 Ga0068860_100017433 3300005843 Bacteria 6996
66 Ga0068860_100285113 3300005843 Bacteria 1615
67 Ga0070716_100169854 3300006173 Bacteria 1422
68 Ga0068871_100179356 3300006358 Bacteria 1819
69 Ga0075428_100199001 3300006844 Bacteria 2167
70 Ga0075428_100551703 3300006844 Bacteria 1232
71 Ga0075430_100017001 3300006846 Bacteria 6194
72 Ga0075430_100128221 3300006846 Bacteria 2115
73 Ga0075430_100145420 3300006846 Bacteria 1974
74 Ga0075431_100004120 3300006847 Bacteria 14194
75 Ga0075431_100010599 3300006847 Bacteria 9270
76 Ga0075431_100078070 3300006847 Bacteria 3418
77 Ga0075433_10012707 3300006852 Bacteria 6814
78 Ga0075433_10087054 3300006852 Bacteria 2759
79 Ga0075434_100052339 3300006871 Bacteria 4057
80 Ga0075434_100104710 3300006871 Bacteria 2839
81 Ga0075429_100009019 3300006880 Bacteria 8667
82 Ga0075429_100224779 3300006880 Bacteria 1644
83 Ga0068865_100052300 3300006881 Bacteria 2830
84 Ga0075436_100002470 3300006914 Bacteria 12724
85 Ga0075436_100010525 3300006914 Bacteria 6342
86 Ga0097620_100006175 3300006931 Bacteria 12175
87 Ga0097620_100097589 3300006931 Bacteria 2991
88 Ga0075435_100006284 3300007076 Bacteria 8388
89 Ga0105240_10058701 3300009093 Bacteria 4803
90 Ga0111539_10006120 3300009094 Bacteria 15533
91 Ga0114129_10001462 3300009147 Bacteria 31921
92 Ga0114129_10023606 3300009147 Bacteria 8716
93 Ga0114129_10030952 3300009147 Bacteria 7568
94 Ga0114129_10061434 3300009147 Bacteria 5250
95 Ga0114129_10510999 3300009147 Unclassified 1568
96 Ga0114129_10538318 3300009147 Bacteria 1520
97 Ga0105243_10019344 3300009148 Bacteria 5162
98 Ga0105242_10013588 3300009176 Bacteria 6299
99 Ga0105242_10470855 3300009176 Bacteria 1188
100 Ga0105248_10017448 3300009177 Bacteria 7915
101 Ga0105248_10218663 3300009177 Bacteria 2145
102 Ga0105238_10001078 3300009551 Bacteria 27577
103 Ga0105239_10025024 3300010375 Bacteria 6576
104 Ga0163162_10042228 3300013306 Bacteria 4563
105 Ga0157372_10153012 3300013307 Bacteria 2663
106 Ga0157375_10142243 3300013308 Bacteria 2527
107 Ga0157375_10306402 3300013308 Bacteria 1752
108 Ga0157375_10309366 3300013308 Bacteria 1744
109 Ga0163163_10024539 3300014325 Bacteria 5739
110 Ga0163163_10027274 3300014325 Bacteria 5470
111 Ga0163163_10153961 3300014325 Bacteria 2343
112 Ga0157380_10022914 3300014326 Bacteria 4709
113 Ga0157380_10026806 3300014326 Bacteria 4378
114 Ga0157380_10029789 3300014326 Bacteria 4174
115 Ga0157380_10037543 3300014326 Bacteria 3754
116 Ga0157380_10187205 3300014326 Bacteria 1824
117 Ga0157380_10447443 3300014326 Bacteria 1240
118 Ga0157377_10004359 3300014745 Bacteria 6502
119 Ga0157377_10018084 3300014745 Bacteria 3658
120 Ga0157377_10157370 3300014745 Bacteria 1410
121 Ga0157376_10399368 3300014969 Bacteria 1329
122 Ga0213874_10008521 3300021377 Bacteria 2502
123 Ga0207682_10007049 3300025893 Bacteria 4509
124 Ga0207682_10053878 3300025893 Bacteria 1669
125 Ga0207682_10093816 3300025893 Bacteria 1305
126 Ga0207692_10051055 3300025898 Bacteria 2095
127 Ga0207642_10009690 3300025899 Bacteria 3361
128 Ga0207699_10000004 3300025906 Bacteria 567333
129 Ga0207699_10007071 3300025906 Bacteria 5469
130 Ga0207645_10006408 3300025907 Bacteria 8451
131 Ga0207645_10059141 3300025907 Bacteria 2447
132 Ga0207645_10142040 3300025907 Bacteria 1565
133 Ga0207643_10014050 3300025908 Bacteria 4346
134 Ga0207643_10016570 3300025908 Bacteria 4020
135 Ga0207643_10027047 3300025908 Bacteria 3179
136 Ga0207707_10170067 3300025912 Bacteria 1905
137 Ga0207695_10086986 3300025913 Bacteria 3150
138 Ga0207660_10143963 3300025917 Bacteria 1825
139 Ga0207681_10034759 3300025923 Bacteria 3316
140 Ga0207681_10188046 3300025923 Bacteria 1578
141 Ga0207694_10024267 3300025924 Bacteria 4604
142 Ga0207650_10019843 3300025925 Bacteria 4730
143 Ga0207650_10213767 3300025925 Bacteria 1549
144 Ga0207659_10000116 3300025926 Bacteria 46654
145 Ga0207659_10002900 3300025926 Bacteria 10206
146 Ga0207659_10010561 3300025926 Bacteria 5807
147 Ga0207664_10015557 3300025929 Bacteria 5527
148 Ga0207644_10019197 3300025931 Bacteria 4635
149 Ga0207686_10004769 3300025934 Bacteria 7275
150 Ga0207709_10004525 3300025935 Bacteria 8018
151 Ga0207704_10192946 3300025938 Bacteria 1483
152 Ga0207665_10078448 3300025939 Bacteria 2268
153 Ga0207691_10042225 3300025940 Bacteria 4204
154 Ga0207691_10059494 3300025940 Bacteria 3473
155 Ga0207691_10286885 3300025940 Bacteria 1416
156 Ga0207711_10031188 3300025941 Bacteria 4498
157 Ga0207689_10184745 3300025942 Bacteria 1720
158 Ga0207679_10076107 3300025945 Bacteria 2549
159 Ga0207651_10025462 3300025960 Bacteria 3677
160 Ga0207651_10134497 3300025960 Bacteria 1899
161 Ga0207651_10237920 3300025960 Bacteria 1482
162 Ga0207640_10043348 3300025981 Bacteria 2875
163 Ga0207658_10031977 3300025986 Bacteria 3741
164 Ga0207703_10018127 3300026035 Bacteria 5499
165 Ga0207703_10076666 3300026035 Bacteria 2774
166 Ga0207703_10146904 3300026035 Bacteria 2052
167 Ga0207678_10122041 3300026067 Bacteria 2223
168 Ga0207678_10306000 3300026067 Bacteria 1366
169 Ga0207708_10001418 3300026075 Bacteria 17960
170 Ga0207708_10082504 3300026075 Bacteria 2471
171 Ga0207674_10303358 3300026116 Bacteria 1546
172 Ga0207675_100045749 3300026118 Bacteria 4089
173 Ga0207675_100671104 3300026118 Bacteria 1044
174 Ga0207683_10079431 3300026121 Bacteria 2909
175 Ga0209974_10020475 3300027876 Bacteria 2192
176 Ga0207428_10006374 3300027907 Bacteria 10911
177 Ga0268265_10284428 3300028380 Unclassified 1481
178 Ga0268264_10007779 3300028381 Bacteria 8925
179 Ga0268264_10248354 3300028381 Bacteria 1652
180 Ga0265316_10012123 3300031344 Bacteria 7741
181 Ga0307408_100102115 3300031548 Bacteria 2187
182 Ga0307410_10127193 3300031852 Bacteria 1867
183 Ga0307411_10014926 3300032005 Bacteria 4341
184 Ga0373944_0013723 3300035089 Bacteria 2252
185 Ga0316574_0066908 3300035398 Unclassified 2265
186 Ga0450916_003843 3300042530 Bacteria 1668
187 Ga0453684_0279737 3300044712 Unclassified 1904
188 Ga0495592_0028912 3300046454 Bacteria 4196
189 Ga0495651_0157661 3300046462 Bacteria 1630
190 Ga0495594_0151652 3300046499 Bacteria 1316
191 Ga0495608_0007774 3300046511 Bacteria 7551
192 Ga0495628_0045703 3300046516 Bacteria 3480
193 Ga0495630_0015018 3300046517 Bacteria 5651
194 Ga0495658_0092892 3300046683 Bacteria 1790
195 Ga0495669_0005113 3300046684 Bacteria 5458
196 Ga0495613_0010502 3300046689 Bacteria 6874
197 Ga0495600_0022227 3300046809 Bacteria 4070
198 Ga0495581_0172990 3300047315 Unclassified 1263
199 Ga0495604_0009980 3300047317 Bacteria 7516
200 Ga0495674_0021972 3300047319 Bacteria 5890
201 Ga0495675_0124655 3300047444 Unclassified 1603
202 Ga0495684_0000228 3300047471 Bacteria 43929
203 Ga0495602_0111785 3300048088 Bacteria 2218
204 Ga0496102_0509480 3300048905 Bacteria 1126
205 Ga0496113_0023690 3300048916 Bacteria 4356
206 nmdc:mga05p37_128097_c1 3300050507 Bacteria 3116
207 nmdc:mga05p37_23609_c1 3300050507 Bacteria 7464
208 nmdc:mga05p37_54003_c1 3300050507 Bacteria 4943
209 nmdc:mga05p37_571885_c1 3300050507 Bacteria 1282
210 nmdc:mga09592_86417_c1 3300050508 Bacteria 2676
211 nmdc:mga0qj67_101193_c1 3300050509 Bacteria 2323
212 nmdc:mga06r32_50749_c1 3300050510 Bacteria 3968
213 nmdc:mga06r32_63447_c1 3300050510 Bacteria 3561
214 nmdc:mga08y16_3088_c1 3300050511 Bacteria 17226
215 nmdc:mga0n895_205088_c1 3300050512 Bacteria 2002
216 nmdc:mga0rr50_183382_c1 3300050513 Bacteria 1712
217 nmdc:mga08x19_110705_c1 3300050514 Unclassified 1832
218 nmdc:mga08x19_12718_c1 3300050514 Bacteria 5075
219 nmdc:mga0a205_306362_c1 3300050515 Bacteria 1461
220 nmdc:mga0a205_72100_c1 3300050515 Bacteria 3336
221 nmdc:mga0a205_73416_c1 3300050515 Bacteria 3305
222 Ga0495601_0011370 3300053077 Bacteria 5321
223 Ga0495601_0086088 3300053077 Bacteria 2019
224 Ga0495619_0002110 3300053085 Bacteria 13179

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300014326 Ga0157380_10037543 Ga0157380_100375433 268
2 3300046684 Ga0495669_0005113 Ga0495669_0005113_2974_3939 273
3 3300005564 Ga0070664_100049745 Ga0070664_1000497453 280
4 3300006880 Ga0075429_100224779 Ga0075429_1002247792 280
5 3300025945 Ga0207679_10076107 Ga0207679_100761072 280
6 3300005331 Ga0070670_100006975 Ga0070670_1000069754 281
7 3300005344 Ga0070661_100123213 Ga0070661_1001232132 281
8 3300005618 Ga0068864_100043748 Ga0068864_1000437483 281
9 3300014325 Ga0163163_10024539 Ga0163163_100245393 281
10 3300025925 Ga0207650_10019843 Ga0207650_100198432 281
11 3300050507 nmdc:mga05p37_571885_c1 nmdc:mga05p37_571885_c1_357_1265 285
12 3300005333 Ga0070677_10038649 Ga0070677_100386491 287
13 3300005842 Ga0068858_100047643 Ga0068858_1000476433 287
14 3300005843 Ga0068860_100285113 Ga0068860_1002851132 287
15 3300006931 Ga0097620_100006175 Ga0097620_1000061752 287
16 3300014325 Ga0163163_10027274 Ga0163163_100272743 287
17 3300026035 Ga0207703_10018127 Ga0207703_100181273 287
18 3300028381 Ga0268264_10248354 Ga0268264_102483542 287
19 3300025893 Ga0207682_10053878 Ga0207682_100538782 288
20 3300046499 Ga0495594_0151652 Ga0495594_0151652_326_1294 288
21 3300005355 Ga0070671_100017856 Ga0070671_1000178564 289
22 3300005364 Ga0070673_100160546 Ga0070673_1001605462 289
23 3300005367 Ga0070667_100086166 Ga0070667_1000861662 289
24 3300005543 Ga0070672_100106739 Ga0070672_1001067392 289
25 3300005842 Ga0068858_100022608 Ga0068858_1000226082 289
26 3300009177 Ga0105248_10017448 Ga0105248_100174482 289
27 3300013306 Ga0163162_10042228 Ga0163162_100422284 289
28 3300014969 Ga0157376_10399368 Ga0157376_103993682 289
29 3300025908 Ga0207643_10027047 Ga0207643_100270473 289
30 3300025938 Ga0207704_10192946 Ga0207704_101929462 289
31 3300025941 Ga0207711_10031188 Ga0207711_100311883 289
32 3300025986 Ga0207658_10031977 Ga0207658_100319772 289
33 3300026035 Ga0207703_10076666 Ga0207703_100766662 289
34 3300026118 Ga0207675_100671104 Ga0207675_1006711041 289
35 3300005434 Ga0070709_10000101 Ga0070709_1000010115 290
36 3300025906 Ga0207699_10000004 Ga0207699_10000004423 290
37 3300005328 Ga0070676_10006288 Ga0070676_100062884 291
38 3300005330 Ga0070690_100158617 Ga0070690_1001586171 291
39 3300005334 Ga0068869_100095498 Ga0068869_1000954982 291
40 3300005353 Ga0070669_100216306 Ga0070669_1002163062 291
41 3300005354 Ga0070675_100150035 Ga0070675_1001500352 291
42 3300005355 Ga0070671_100032260 Ga0070671_1000322603 291
43 3300005364 Ga0070673_100144886 Ga0070673_1001448861 291
44 3300005456 Ga0070678_100052131 Ga0070678_1000521312 291
45 3300005459 Ga0068867_100004141 Ga0068867_10000414110 291
46 3300005578 Ga0068854_100048312 Ga0068854_1000483122 291
47 3300005615 Ga0070702_100007714 Ga0070702_1000077142 291
48 3300005718 Ga0068866_10005667 Ga0068866_100056674 291
49 3300005842 Ga0068858_100101095 Ga0068858_1001010953 291
50 3300005843 Ga0068860_100017433 Ga0068860_1000174333 291
51 3300009148 Ga0105243_10019344 Ga0105243_100193442 291
52 3300009176 Ga0105242_10013588 Ga0105242_100135883 291
53 3300013308 Ga0157375_10142243 Ga0157375_101422432 291
54 3300014326 Ga0157380_10029789 Ga0157380_100297893 291
55 3300014745 Ga0157377_10157370 Ga0157377_101573702 291
56 3300025893 Ga0207682_10007049 Ga0207682_100070493 291
57 3300025899 Ga0207642_10009690 Ga0207642_100096903 291
58 3300025907 Ga0207645_10006408 Ga0207645_100064086 291
59 3300025908 Ga0207643_10014050 Ga0207643_100140502 291
60 3300025923 Ga0207681_10034759 Ga0207681_100347592 291
61 3300025926 Ga0207659_10010561 Ga0207659_100105611 291
62 3300025931 Ga0207644_10019197 Ga0207644_100191974 291
63 3300025934 Ga0207686_10004769 Ga0207686_100047694 291
64 3300025935 Ga0207709_10004525 Ga0207709_100045252 291
65 3300025960 Ga0207651_10025462 Ga0207651_100254623 291
66 3300025981 Ga0207640_10043348 Ga0207640_100433482 291
67 3300026035 Ga0207703_10146904 Ga0207703_101469041 291
68 3300026067 Ga0207678_10122041 Ga0207678_101220412 291
69 3300026075 Ga0207708_10001418 Ga0207708_100014182 291
70 3300026118 Ga0207675_100045749 Ga0207675_1000457494 291
71 3300026121 Ga0207683_10079431 Ga0207683_100794313 291
72 3300028381 Ga0268264_10007779 Ga0268264_100077794 291
73 3300005333 Ga0070677_10037491 Ga0070677_100374912 292
74 3300014326 Ga0157380_10447443 Ga0157380_104474432 292
75 3300009147 Ga0114129_10001462 Ga0114129_100014628 294
76 3300050507 nmdc:mga05p37_54003_c1 nmdc:mga05p37_54003_c1_737_1699 294
77 3300031548 Ga0307408_100102115 Ga0307408_1001021152 295
78 3300031852 Ga0307410_10127193 Ga0307410_101271932 295
79 3300032005 Ga0307411_10014926 Ga0307411_100149262 295
80 3300046683 Ga0495658_0092892 Ga0495658_0092892_262_1221 295
81 3300050512 nmdc:mga0n895_205088_c1 nmdc:mga0n895_205088_c1_284_1270 296
82 3300005536 Ga0070697_100166119 Ga0070697_1001661192 297
83 3300006173 Ga0070716_100169854 Ga0070716_1001698542 299
84 3300050513 nmdc:mga0rr50_183382_c1 nmdc:mga0rr50_183382_c1_94_1059 299
85 3300050514 nmdc:mga08x19_110705_c1 nmdc:mga08x19_110705_c1_119_1084 299
86 3300005434 Ga0070709_10000841 Ga0070709_100008414 300
87 3300005435 Ga0070714_100013091 Ga0070714_1000130914 300
88 3300005436 Ga0070713_100002569 Ga0070713_1000025694 300
89 3300005437 Ga0070710_10058136 Ga0070710_100581362 300
90 3300006914 Ga0075436_100010525 Ga0075436_1000105252 300
91 3300007076 Ga0075435_100006284 Ga0075435_1000062842 300
92 3300025898 Ga0207692_10051055 Ga0207692_100510552 300
93 3300025906 Ga0207699_10007071 Ga0207699_100070714 300
94 3300025929 Ga0207664_10015557 Ga0207664_100155572 300
95 3300046462 Ga0495651_0157661 Ga0495651_0157661_530_1495 300
96 3300048088 Ga0495602_0111785 Ga0495602_0111785_1007_1972 300
97 3300005334 Ga0068869_100214096 Ga0068869_1002140961 301
98 3300005518 Ga0070699_100199684 Ga0070699_1001996842 301
99 3300006871 Ga0075434_100104710 Ga0075434_1001047102 301
100 3300006881 Ga0068865_100052300 Ga0068865_1000523002 301
101 3300009147 Ga0114129_10510999 Ga0114129_105109992 301
102 3300025942 Ga0207689_10184745 Ga0207689_101847453 301
103 3300006844 Ga0075428_100199001 Ga0075428_1001990011 302
104 3300006847 Ga0075431_100010599 Ga0075431_1000105992 302
105 3300048905 Ga0496102_0509480 Ga0496102_0509480_149_1108 302
106 3300005455 Ga0070663_100052680 Ga0070663_1000526803 303
107 3300005458 Ga0070681_10282573 Ga0070681_102825731 303
108 3300006914 Ga0075436_100002470 Ga0075436_10000247011 303
109 3300009093 Ga0105240_10058701 Ga0105240_100587012 303
110 3300013307 Ga0157372_10153012 Ga0157372_101530125 303
111 3300025913 Ga0207695_10086986 Ga0207695_100869862 303
112 3300026067 Ga0207678_10306000 Ga0207678_103060002 303
113 3300050514 nmdc:mga08x19_12718_c1 nmdc:mga08x19_12718_c1_2231_3202 303
114 3300005328 Ga0070676_10098198 Ga0070676_100981982 304
115 3300005331 Ga0070670_100196999 Ga0070670_1001969992 304
116 3300005354 Ga0070675_100128674 Ga0070675_1001286742 304
117 3300005459 Ga0068867_100216023 Ga0068867_1002160232 304
118 3300005535 Ga0070684_100198523 Ga0070684_1001985232 304
119 3300005539 Ga0068853_100153381 Ga0068853_1001533812 304
120 3300006844 Ga0075428_100551703 Ga0075428_1005517032 304
121 3300009176 Ga0105242_10470855 Ga0105242_104708552 304
122 3300010375 Ga0105239_10025024 Ga0105239_100250246 304
123 3300025907 Ga0207645_10142040 Ga0207645_101420402 304
124 3300025925 Ga0207650_10213767 Ga0207650_102137672 304
125 3300026116 Ga0207674_10303358 Ga0207674_103033582 304
126 3300014325 Ga0163163_10153961 Ga0163163_101539612 306
127 3300025917 Ga0207660_10143963 Ga0207660_101439632 307
128 3300046511 Ga0495608_0007774 Ga0495608_0007774_2855_3823 308
129 3300046516 Ga0495628_0045703 Ga0495628_0045703_1262_2230 308
130 3300046517 Ga0495630_0015018 Ga0495630_0015018_55_1023 308
131 3300046689 Ga0495613_0010502 Ga0495613_0010502_5836_6804 308
132 3300046809 Ga0495600_0022227 Ga0495600_0022227_1403_2371 308
133 3300047317 Ga0495604_0009980 Ga0495604_0009980_4285_5253 308
134 3300047319 Ga0495674_0021972 Ga0495674_0021972_2481_3449 308
135 3300047471 Ga0495684_0000228 Ga0495684_0000228_36928_37896 308
136 3300053077 Ga0495601_0011370 Ga0495601_0011370_1606_2574 308
137 3300053085 Ga0495619_0002110 Ga0495619_0002110_8905_9873 308
138 3300006852 Ga0075433_10087054 Ga0075433_100870542 309
139 3300006871 Ga0075434_100052339 Ga0075434_1000523393 309
140 3300009147 Ga0114129_10061434 Ga0114129_100614342 309
141 3300050507 nmdc:mga05p37_128097_c1 nmdc:mga05p37_128097_c1_242_1213 309
142 3300050515 nmdc:mga0a205_72100_c1 nmdc:mga0a205_72100_c1_913_1884 309
143 3300035398 Ga0316574_0066908 Ga0316574_0066908_1121_2092 311
144 3300005353 Ga0070669_100285881 Ga0070669_1002858811 312
145 3300005354 Ga0070675_100004337 Ga0070675_1000043376 312
146 3300005441 Ga0070700_100066130 Ga0070700_1000661302 312
147 3300005543 Ga0070672_100037326 Ga0070672_1000373262 312
148 3300013308 Ga0157375_10306402 Ga0157375_103064022 312
149 3300014326 Ga0157380_10022914 Ga0157380_100229143 312
150 3300025893 Ga0207682_10093816 Ga0207682_100938162 312
151 3300025926 Ga0207659_10002900 Ga0207659_100029004 312
152 3300025940 Ga0207691_10059494 Ga0207691_100594942 312
153 3300025960 Ga0207651_10237920 Ga0207651_102379202 312
154 3300026075 Ga0207708_10082504 Ga0207708_100825042 312
155 3300025912 Ga0207707_10170067 Ga0207707_101700672 314
156 3300005445 Ga0070708_100193860 Ga0070708_1001938602 315
157 3300006846 Ga0075430_100128221 Ga0075430_1001282212 315
158 3300031344 Ga0265316_10012123 Ga0265316_100121232 315
159 3300047315 Ga0495581_0172990 Ga0495581_0172990_34_993 315
160 3300005353 Ga0070669_100401787 Ga0070669_1004017871 316
161 3300009147 Ga0114129_10538318 Ga0114129_105383182 316
162 3300021377 Ga0213874_10008521 Ga0213874_100085212 316
163 3300028380 Ga0268265_10284428 Ga0268265_102844282 316
164 3300044712 Ga0453684_0279737 Ga0453684_0279737_654_1622 316
165 3300050515 nmdc:mga0a205_306362_c1 nmdc:mga0a205_306362_c1_274_1284 316
166 3300005467 Ga0070706_100513225 Ga0070706_1005132251 317
167 3300035089 Ga0373944_0013723 Ga0373944_0013723_928_1896 317
168 3300046454 Ga0495592_0028912 Ga0495592_0028912_2386_3354 317
169 3300047444 Ga0495675_0124655 Ga0495675_0124655_98_1066 317
170 3300053077 Ga0495601_0086088 Ga0495601_0086088_984_1952 317
171 3300005333 Ga0070677_10045322 Ga0070677_100453222 318
172 3300005354 Ga0070675_100001854 Ga0070675_1000018548 318
173 3300005356 Ga0070674_100062966 Ga0070674_1000629663 318
174 3300005458 Ga0070681_10060114 Ga0070681_100601143 318
175 3300005543 Ga0070672_100049528 Ga0070672_1000495282 318
176 3300005617 Ga0068859_100097595 Ga0068859_1000975952 318
177 3300006846 Ga0075430_100017001 Ga0075430_1000170013 318
178 3300006847 Ga0075431_100004120 Ga0075431_10000412011 318
179 3300006852 Ga0075433_10012707 Ga0075433_100127076 318
180 3300006931 Ga0097620_100097589 Ga0097620_1000975892 318
181 3300009147 Ga0114129_10030952 Ga0114129_100309524 318
182 3300009551 Ga0105238_10001078 Ga0105238_100010789 318
183 3300014326 Ga0157380_10026806 Ga0157380_100268062 318
184 3300014326 Ga0157380_10187205 Ga0157380_101872052 318
185 3300025907 Ga0207645_10059141 Ga0207645_100591412 318
186 3300025924 Ga0207694_10024267 Ga0207694_100242674 318
187 3300025926 Ga0207659_10000116 Ga0207659_100001168 318
188 3300025940 Ga0207691_10042225 Ga0207691_100422253 318
189 3300025940 Ga0207691_10286885 Ga0207691_102868852 318
190 3300027907 Ga0207428_10006374 Ga0207428_100063745 318
191 3300050507 nmdc:mga05p37_23609_c1 nmdc:mga05p37_23609_c1_2345_3301 318
192 3300050509 nmdc:mga0qj67_101193_c1 nmdc:mga0qj67_101193_c1_662_1624 318
193 3300050510 nmdc:mga06r32_50749_c1 nmdc:mga06r32_50749_c1_2730_3692 318
194 3300050511 nmdc:mga08y16_3088_c1 nmdc:mga08y16_3088_c1_12821_13783 318
195 3300005289 Ga0065704_10107252 Ga0065704_101072522 319
196 3300005290 Ga0065712_10002342 Ga0065712_100023424 319
197 3300005295 Ga0065707_10097155 Ga0065707_100971552 319
198 3300005340 Ga0070689_100167366 Ga0070689_1001673662 319
199 3300005353 Ga0070669_100054386 Ga0070669_1000543863 319
200 3300005354 Ga0070675_100054490 Ga0070675_1000544902 319
201 3300005354 Ga0070675_100073118 Ga0070675_1000731182 319
202 3300005364 Ga0070673_100003780 Ga0070673_1000037807 319
203 3300005364 Ga0070673_100191488 Ga0070673_1001914882 319
204 3300005365 Ga0070688_100007794 Ga0070688_1000077944 319
205 3300006358 Ga0068871_100179356 Ga0068871_1001793562 319
206 3300006846 Ga0075430_100145420 Ga0075430_1001454202 319
207 3300006847 Ga0075431_100078070 Ga0075431_1000780703 319
208 3300006880 Ga0075429_100009019 Ga0075429_1000090192 319
209 3300009094 Ga0111539_10006120 Ga0111539_100061208 319
210 3300009147 Ga0114129_10023606 Ga0114129_100236065 319
211 3300009177 Ga0105248_10218663 Ga0105248_102186632 319
212 3300013308 Ga0157375_10309366 Ga0157375_103093661 319
213 3300014745 Ga0157377_10004359 Ga0157377_100043593 319
214 3300014745 Ga0157377_10018084 Ga0157377_100180843 319
215 3300025908 Ga0207643_10016570 Ga0207643_100165704 319
216 3300025923 Ga0207681_10188046 Ga0207681_101880461 319
217 3300025939 Ga0207665_10078448 Ga0207665_100784482 319
218 3300025960 Ga0207651_10134497 Ga0207651_101344972 319
219 3300027876 Ga0209974_10020475 Ga0209974_100204752 319
220 3300042530 Ga0450916_003843 Ga0450916_003843_403_1365 319
221 3300048916 Ga0496113_0023690 Ga0496113_0023690_813_1775 319
222 3300050508 nmdc:mga09592_86417_c1 nmdc:mga09592_86417_c1_635_1594 319
223 3300050510 nmdc:mga06r32_63447_c1 nmdc:mga06r32_63447_c1_1859_2818 319
224 3300050515 nmdc:mga0a205_73416_c1 nmdc:mga0a205_73416_c1_574_1536 319

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00482

T2SSF

Type II secretion system (T2SS), protein F

155

282

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
2whn-assembly1.cif.gz_A n-terminal domain from the pilc type iv pilus biogenesis protein 0.8498 145 247
5nbg-assembly1.cif.gz_B structure of the cytoplasmic domain i of outf in the d. dadantii type ii secretion system 0.8454 145 252
3c1q-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.8437 145 250
2vma-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.8425 145 257
2vmb-assembly2.cif.gz_B the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.8307 145 257
ID Description Score Start End Superfamily
af_I6Y479_96_222_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.8579 152 276 1.20.81.30
af_I6Y479_96_222_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.84 152 276 1.20.81.30
af_P36646_52_165_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.8245 145 254 1.20.81.30
3c1qB00 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.8096 145 253 1.20.81.30
af_P36646_249_359_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.8033 138 248 1.20.81.30
ID Description Score Start End GO Terms
AF-A0A535R8U2-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.8741 87 319 GO:0005886
AF-A0A535R8U2-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.864 87 319 GO:0005886
AF-A0A5C9CMH2-F1-model_v4 Tight adherence protein B 0.8629 82 316 GO:0005886
AF-A0A847GU78-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.8612 45 319 GO:0005886
AF-A0A2N1PQ49-F1-model_v4 Type II secretion protein F 0.8574 64 319 GO:0005886

Feature Viewer

pLDDT pTM Quality
76.93 0.62 Medium
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Predicted Structure (AlphaFold2)

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