F335048

General Info

Members Datasets Scaffolds Average Seq Length
222 140 442 265

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221635|2644197689
Length 291
Sequence RSSGTAGSTGGLGARGASATLQPEPGTAIGRFLSDGWVATRRNLMKIIRVPDILVFTLLQPIMFVLLFTFVFGAAIDVPGGYTSFLMAGIFAQTVVFGSTYSGSAMAQDLKDGIIDRFRTLPMSGAAVLVGRTNGDLVINGLSMLVMMGTGFIVGWRVESSLGGFLAGVALLLLFAYAFSWLMAFLGMSVRSPEIINNVSFLVLFPLTFISNAFVPTENLPTPLRIFSEWNPVSALVQSARELFGNVPAGTPVGDAWTAQNPILTVLIGIAVLLLVFVPLSIAKFAALGKK

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
11 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
20 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
21 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
23 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
24 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
25 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
26 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
27 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
28 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
29 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
30 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
31 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
32 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
33 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
34 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
35 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
36 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
37 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
38 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
39 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
40 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
41 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
42 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
43 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
44 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
45 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
46 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
47 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
48 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
49 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
50 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
51 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
52 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
53 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
54 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
55 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
56 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
57 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
58 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
59 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
60 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
61 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
62 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
63 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
64 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
65 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
66 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
67 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
82 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
83 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
84 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
85 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
86 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
87 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
88 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
89 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
90 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
91 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
92 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
95 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
96 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
97 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
98 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
99 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
100 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
101 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
102 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
103 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
104 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
105 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
106 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
107 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
108 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
109 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
110 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
111 2643221604 Nocardioides sp. Root190 Isolate Unclassified
112 2643221617 Nocardioides sp. Root79 Isolate Unclassified
113 2643221620 Nocardioides sp. Root240 Isolate Unclassified
114 2643221649 Leifsonia sp. Root4 Isolate Unclassified
115 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
116 2643221692 Nocardia sp. Root136 Isolate Unclassified
117 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
118 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
119 2738541305 Nocardioides sp. CF167 Isolate Unclassified
120 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
121 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
122 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
123 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
124 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
125 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
126 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
127 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
128 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
129 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
130 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
131 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
132 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
133 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
134 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
135 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
136 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
137 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
138 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
139 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
140 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 85.14
Metatranscriptomes 0.45
Isolates 14.41

Biome Distribution

Category Percentage (%)
Aerial Root 0.45
Bulb 0
Endosphere 4.5
Nodule 0
Rhizoplane 0.9
Rhizosphere 76.58
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10065820 3300003323 Bacteria 1549
2 Ga0006562J51391_1066120 3300003578 Bacteria 1860
3 Ga0065714_10009654 3300005288 Bacteria 2551
4 Ga0065714_10014399 3300005288 Bacteria 2539
5 Ga0070683_100024497 3300005329 Bacteria 5407
6 Ga0070706_100148397 3300005467 Bacteria 2189
7 Ga0070698_100051481 3300005471 Bacteria 4194
8 Ga0070699_100071543 3300005518 Bacteria 3016
9 Ga0070679_100241604 3300005530 Bacteria 1763
10 Ga0070697_100043747 3300005536 Bacteria 3627
11 Ga0070696_100026822 3300005546 Bacteria 3921
12 Ga0070704_100015147 3300005549 Bacteria 4836
13 Ga0075365_10001606 3300006038 Bacteria 10408
14 Ga0075364_10009237 3300006051 Bacteria 5909
15 Ga0075428_100134863 3300006844 Bacteria 2685
16 Ga0075430_100006240 3300006846 Bacteria 10055
17 Ga0075430_100007461 3300006846 Bacteria 9231
18 Ga0075431_100011890 3300006847 Bacteria 8783
19 Ga0075431_100013291 3300006847 Bacteria 8320
20 Ga0075431_100841134 3300006847 Bacteria 889
21 Ga0075429_100005461 3300006880 Bacteria 10948
22 Ga0114129_10007726 3300009147 Bacteria 15297
23 Ga0114129_10136749 3300009147 Bacteria 3362
24 Ga0114129_10270742 3300009147 Bacteria 2272
25 Ga0105030_101218 3300009987 Bacteria 2285
26 Ga0157369_10220202 3300013105 Bacteria 1987
27 Ga0207652_10103722 3300025921 Bacteria 2514
28 Ga0307509_10301554 3300031507 Bacteria 1350
29 Ga0307406_10066823 3300031901 Bacteria 2342
30 Ga0307406_10340893 3300031901 Bacteria 1167
31 Ga0307409_100164342 3300031995 Bacteria 1946
32 Ga0307409_100556519 3300031995 Bacteria 1127
33 Ga0307416_100539360 3300032002 Bacteria 1238
34 Ga0307414_10302969 3300032004 Bacteria 1353
35 Ga0395900_0209636 3300037418 Bacteria 1968
36 Ga0395898_0088925 3300037466 Bacteria 2973
37 Ga0395905_0207493 3300037471 Bacteria 1836
38 Ga0395901_0037815 3300038443 Bacteria 4991
39 Ga0395901_0109076 3300038443 Bacteria 2906
40 Ga0400485_09966 3300038735 Bacteria 2053
41 Ga0400486_10720 3300038742 Bacteria 1240
42 Ga0400483_193323 3300039062 Bacteria 1470
43 Ga0439438_011609 3300041405 Bacteria 2735
44 Ga0439461_0006590 3300041410 Bacteria 2028
45 Ga0451791_1743907 3300041451 Bacteria 1220
46 Ga0451833_0459662 3300041491 Bacteria 5340
47 Ga0451833_0537301 3300041491 Bacteria 1524
48 Ga0451837_1101138 3300041494 Bacteria 11297
49 Ga0451841_0530949 3300041498 Bacteria 1105
50 Ga0439433_0004174 3300041999 Bacteria 3104
51 Ga0439432_000175 3300042006 Bacteria 22621
52 Ga0439457_000018 3300042014 Bacteria 31991
53 Ga0439462_0025466 3300042015 Bacteria 1557
54 Ga0439463_027836 3300042016 Bacteria 1424
55 Ga0450907_005600 3300042146 Bacteria 2117
56 Ga0450908_000432 3300042184 Bacteria 8098
57 Ga0450908_011600 3300042184 Bacteria 1612
58 Ga0439434_0000221 3300042435 Bacteria 15876
59 Ga0439464_0002801 3300042439 Bacteria 4331
60 Ga0466969_0061674 3300044656 Bacteria 1821
61 Ga0466972_0028220 3300044658 Bacteria 2770
62 Ga0466965_0008550 3300044683 Bacteria 4737
63 Ga0466965_0019937 3300044683 Bacteria 3220
64 Ga0466963_0164361 3300044694 Bacteria 1546
65 Ga0466968_0090590 3300044735 Bacteria 1354
66 Ga0466970_0016145 3300044765 Bacteria 3846
67 Ga0466970_0063973 3300044765 Bacteria 1972
68 Ga0466960_0009580 3300044901 Bacteria 3998
69 Ga0466960_0042517 3300044901 Bacteria 2158
70 Ga0466959_0422118 3300045049 Bacteria 905
71 Ga0495609_0076309 3300046538 Bacteria 1469
72 Ga0496105_0284765 3300048908 Bacteria 1332
73 Ga0496117_0001809 3300048920 Bacteria 29056
74 Ga0496117_0099736 3300048920 Bacteria 1841
75 Ga0496118_0002487 3300048921 Bacteria 24735
76 Ga0496118_0025064 3300048921 Bacteria 5128
77 Ga0496119_0067180 3300048922 Bacteria 2115
78 Ga0496120_0012177 3300048923 Bacteria 5867
79 Ga0496122_0000705 3300048925 Bacteria 65974
80 Ga0496122_0028051 3300048925 Bacteria 4793
81 Ga0496123_0017604 3300048926 Bacteria 5738
82 Ga0496124_0001545 3300048927 Bacteria 33358
83 Ga0496124_0114005 3300048927 Bacteria 2171
84 Ga0496124_0157220 3300048927 Bacteria 1776
85 Ga0496125_0000069 3300048928 Bacteria 246981
86 Ga0501031_0022703 3300049568 Bacteria 4090
87 Ga0501031_0262899 3300049568 Bacteria 1121
88 Ga0501032_0125358 3300049569 Bacteria 1697
89 Ga0501032_0353015 3300049569 Bacteria 947
90 Ga0501034_0143730 3300049571 Bacteria 2364
91 Ga0501034_0462695 3300049571 Bacteria 1185
92 Ga0501036_0003201 3300049572 Bacteria 13072
93 Ga0501036_0077895 3300049572 Bacteria 2805
94 Ga0501036_0281219 3300049572 Bacteria 1392
95 Ga0501037_0020894 3300049573 Bacteria 4834
96 Ga0501038_0012152 3300049574 Bacteria 7861
97 Ga0501038_0015875 3300049574 Bacteria 6842
98 Ga0501038_0404568 3300049574 Bacteria 1055
99 Ga0501039_0000813 3300049575 Bacteria 22530
100 Ga0501039_0179288 3300049575 Bacteria 1666
101 Ga0501039_0235657 3300049575 Bacteria 1439
102 Ga0501039_0347695 3300049575 Bacteria 1165
103 Ga0501040_0011546 3300049576 Bacteria 5780
104 Ga0501040_0026840 3300049576 Bacteria 3875
105 Ga0501040_0035440 3300049576 Bacteria 3384
106 Ga0501040_0037314 3300049576 Bacteria 3301
107 Ga0501040_0119883 3300049576 Bacteria 1845
108 Ga0501040_0177831 3300049576 Bacteria 1508
109 Ga0501040_0259116 3300049576 Bacteria 1241
110 Ga0501041_0004525 3300049577 Bacteria 8064
111 Ga0501042_0003499 3300049578 Bacteria 9867
112 Ga0501042_0044453 3300049578 Bacteria 3165
113 Ga0501043_0090200 3300049579 Bacteria 2410
114 Ga0501046_0005021 3300049580 Bacteria 11877
115 Ga0501047_0135350 3300049581 Bacteria 2344
116 Ga0501047_0305646 3300049581 Bacteria 1432
117 Ga0501048_0012375 3300049582 Bacteria 6346
118 Ga0501048_0042301 3300049582 Bacteria 3263
119 Ga0501048_0179625 3300049582 Bacteria 1500
120 Ga0501068_0236223 3300049584 Bacteria 1163
121 Ga0501070_0393449 3300049586 Bacteria 1122
122 Ga0501071_0011000 3300049587 Bacteria 6076
123 Ga0501071_0305571 3300049587 Bacteria 1206
124 Ga0501071_0367174 3300049587 Bacteria 1096
125 Ga0501071_0462406 3300049587 Bacteria 972
126 Ga0501072_0001289 3300049588 Bacteria 18747
127 Ga0501072_0004406 3300049588 Bacteria 10691
128 Ga0501072_0015853 3300049588 Bacteria 5776
129 Ga0501072_0041299 3300049588 Bacteria 3623
130 Ga0501072_0558925 3300049588 Bacteria 903
131 Ga0501074_0012545 3300049590 Bacteria 6160
132 Ga0501074_0188125 3300049590 Bacteria 1472
133 Ga0501074_0253573 3300049590 Bacteria 1251
134 Ga0501075_0023268 3300049591 Bacteria 4536
135 Ga0501075_0024169 3300049591 Bacteria 4451
136 Ga0501075_0082993 3300049591 Bacteria 2427
137 Ga0501076_0015352 3300049592 Bacteria 5787
138 Ga0501076_0018179 3300049592 Bacteria 5354
139 Ga0501076_0032932 3300049592 Bacteria 4046
140 Ga0501076_0077610 3300049592 Bacteria 2665
141 Ga0501076_0135647 3300049592 Bacteria 1998
142 Ga0501076_0191682 3300049592 Bacteria 1668
143 Ga0501077_0039635 3300049593 Bacteria 3001
144 Ga0501077_0215225 3300049593 Bacteria 1221
145 Ga0501079_0037179 3300049741 Bacteria 3751
146 Ga0501079_0055092 3300049741 Bacteria 3068
147 Ga0501079_0069498 3300049741 Bacteria 2718
148 Ga0501079_0079805 3300049741 Bacteria 2530
149 Ga0501079_0169653 3300049741 Bacteria 1701
150 Ga0501080_0066848 3300049742 Bacteria 3343
151 Ga0501080_0207865 3300049742 Bacteria 1795
152 Ga0501081_0001923 3300049743 Bacteria 12892
153 Ga0501081_0007777 3300049743 Bacteria 6951
154 Ga0501081_0173084 3300049743 Bacteria 1559
155 Ga0501081_0180235 3300049743 Bacteria 1528
156 Ga0501035_0021671 3300049822 Bacteria 5909
157 Ga0501035_0046157 3300049822 Bacteria 3918
158 Ga0501044_0001815 3300049823 Bacteria 24871
159 Ga0501044_0145540 3300049823 Bacteria 2356
160 Ga0501045_0022604 3300049824 Bacteria 4504
161 Ga0501045_0033866 3300049824 Bacteria 3706
162 Ga0501045_0075769 3300049824 Bacteria 2478
163 Ga0501045_0215223 3300049824 Bacteria 1431
164 nmdc:mga05p37_12104_c1 3300050507 Bacteria 10299
165 nmdc:mga05p37_124054_c1 3300050507 Bacteria 3173
166 nmdc:mga09592_10870_c1 3300050508 Bacteria 7408
167 nmdc:mga09592_128233_c1 3300050508 Bacteria 2182
168 nmdc:mga0qj67_4790_c1 3300050509 Bacteria 9841
169 nmdc:mga06r32_128722_c1 3300050510 Bacteria 2502
170 nmdc:mga06r32_29230_c1 3300050510 Bacteria 5164
171 nmdc:mga06r32_49177_c1 3300050510 Bacteria 4031
172 Ga0500643_000247 3300053087 Bacteria 49734
173 Ga0500641_0005156 3300053096 Bacteria 4631
174 Ga0500556_0000059 3300053104 Bacteria 112837
175 Ga0500559_0158632 3300053136 Bacteria 1063
176 Ga0500568_0000012 3300053139 Bacteria 225711
177 Ga0500573_0000555 3300053140 Bacteria 16268
178 Ga0500573_0011052 3300053140 Bacteria 5048
179 Ga0500577_0061702 3300053142 Bacteria 1443
180 Ga0501084_0010032 3300054114 Bacteria 7825
181 Ga0501084_0130895 3300054114 Bacteria 2112
182 Ga0501084_0321009 3300054114 Bacteria 1308
183 Ga0501082_0006519 3300060353 Bacteria 10120
184 Ga0501082_0014826 3300060353 Bacteria 6715
185 Ga0501082_0070746 3300060353 Bacteria 3004
186 Ga0501082_0143698 3300060353 Bacteria 2071
187 Ga0501082_0245201 3300060353 Bacteria 1559
188 Ga0530510_0045915 3300061734 Bacteria 3156
189 Ga0530510_0624306 3300061734 Bacteria 820
190 2644197689 2643221635 Bacteria 2632343
191 2587861568 2585428094 Bacteria 3604039
192 2644032558 2643221604 Bacteria 5014917
193 2644101370 2643221617 Bacteria 5139111
194 2644119226 2643221620 Bacteria 5134593
195 2644278184 2643221649 Bacteria 3867359
196 2644457449 2643221681 Bacteria 3707866
197 2644517496 2643221692 Bacteria 7282860
198 2644537287 2643221697 Bacteria 3575694
199 2644553298 2643221699 Bacteria 5731501
200 2738868985 2738541305 Bacteria 4910150
201 2753301208 2751185788 Bacteria 4541048
202 2809228515 2808606447 Bacteria 3572005
203 2812330435 2811994874 Bacteria 5367947
204 2812362779 2811994880 Bacteria 4147780
205 2852634104 2852632344 Bacteria 3463163
206 2855389234 2855386786 Bacteria 4752232
207 2904430889 2904430863 Bacteria 3486923
208 2904503585 2904501621 Bacteria 3401437
209 2905929921 2905926851 Bacteria 4423176
210 2908675232 2908674828 Bacteria 3382763
211 2909075451 2909074476 Bacteria 3436050
212 2919039910 2919039151 Bacteria 3391018
213 2919045187 2919042368 Bacteria 3905917
214 2928108294 2928104781 Bacteria 3877447
215 2928501253 2928500415 Bacteria 3384541
216 2939657844 2939657138 Bacteria 3740283
217 2939661611 2939660829 Bacteria 3784848
218 2946006434 2946003308 Bacteria 3857229
219 2964328128 2964326757 Bacteria 3290868
220 2966927051 2966924647 Bacteria 3268643
221 2984553388 2984551494 Bacteria 3877562
222 rootH1_10065820
223 Ga0006562J51391_1066120
224 Ga0065714_10009654
225 Ga0065714_10014399
226 Ga0070683_100024497
227 Ga0070706_100148397
228 Ga0070698_100051481
229 Ga0070699_100071543
230 Ga0070679_100241604
231 Ga0070697_100043747
232 Ga0070696_100026822
233 Ga0070704_100015147
234 Ga0075365_10001606
235 Ga0075364_10009237
236 Ga0075428_100134863
237 Ga0075430_100006240
238 Ga0075430_100007461
239 Ga0075431_100011890
240 Ga0075431_100013291
241 Ga0075431_100841134
242 Ga0075429_100005461
243 Ga0114129_10007726
244 Ga0114129_10136749
245 Ga0114129_10270742
246 Ga0105030_101218
247 Ga0157369_10220202
248 Ga0207652_10103722
249 Ga0307509_10301554
250 Ga0307406_10066823
251 Ga0307406_10340893
252 Ga0307409_100164342
253 Ga0307409_100556519
254 Ga0307416_100539360
255 Ga0307414_10302969
256 Ga0395900_0209636
257 Ga0395898_0088925
258 Ga0395905_0207493
259 Ga0395901_0037815
260 Ga0395901_0109076
261 Ga0400485_09966
262 Ga0400486_10720
263 Ga0400483_193323
264 Ga0439438_011609
265 Ga0439461_0006590
266 Ga0451791_1743907
267 Ga0451833_0459662
268 Ga0451833_0537301
269 Ga0451837_1101138
270 Ga0451841_0530949
271 Ga0439433_0004174
272 Ga0439432_000175
273 Ga0439457_000018
274 Ga0439462_0025466
275 Ga0439463_027836
276 Ga0450907_005600
277 Ga0450908_000432
278 Ga0450908_011600
279 Ga0439434_0000221
280 Ga0439464_0002801
281 Ga0466969_0061674
282 Ga0466972_0028220
283 Ga0466965_0008550
284 Ga0466965_0019937
285 Ga0466963_0164361
286 Ga0466968_0090590
287 Ga0466970_0016145
288 Ga0466970_0063973
289 Ga0466960_0009580
290 Ga0466960_0042517
291 Ga0466959_0422118
292 Ga0495609_0076309
293 Ga0496105_0284765
294 Ga0496117_0001809
295 Ga0496117_0099736
296 Ga0496118_0002487
297 Ga0496118_0025064
298 Ga0496119_0067180
299 Ga0496120_0012177
300 Ga0496122_0000705
301 Ga0496122_0028051
302 Ga0496123_0017604
303 Ga0496124_0001545
304 Ga0496124_0114005
305 Ga0496124_0157220
306 Ga0496125_0000069
307 Ga0501031_0022703
308 Ga0501031_0262899
309 Ga0501032_0125358
310 Ga0501032_0353015
311 Ga0501034_0143730
312 Ga0501034_0462695
313 Ga0501036_0003201
314 Ga0501036_0077895
315 Ga0501036_0281219
316 Ga0501037_0020894
317 Ga0501038_0012152
318 Ga0501038_0015875
319 Ga0501038_0404568
320 Ga0501039_0000813
321 Ga0501039_0179288
322 Ga0501039_0235657
323 Ga0501039_0347695
324 Ga0501040_0011546
325 Ga0501040_0026840
326 Ga0501040_0035440
327 Ga0501040_0037314
328 Ga0501040_0119883
329 Ga0501040_0177831
330 Ga0501040_0259116
331 Ga0501041_0004525
332 Ga0501042_0003499
333 Ga0501042_0044453
334 Ga0501043_0090200
335 Ga0501046_0005021
336 Ga0501047_0135350
337 Ga0501047_0305646
338 Ga0501048_0012375
339 Ga0501048_0042301
340 Ga0501048_0179625
341 Ga0501068_0236223
342 Ga0501070_0393449
343 Ga0501071_0011000
344 Ga0501071_0305571
345 Ga0501071_0367174
346 Ga0501071_0462406
347 Ga0501072_0001289
348 Ga0501072_0004406
349 Ga0501072_0015853
350 Ga0501072_0041299
351 Ga0501072_0558925
352 Ga0501074_0012545
353 Ga0501074_0188125
354 Ga0501074_0253573
355 Ga0501075_0023268
356 Ga0501075_0024169
357 Ga0501075_0082993
358 Ga0501076_0015352
359 Ga0501076_0018179
360 Ga0501076_0032932
361 Ga0501076_0077610
362 Ga0501076_0135647
363 Ga0501076_0191682
364 Ga0501077_0039635
365 Ga0501077_0215225
366 Ga0501079_0037179
367 Ga0501079_0055092
368 Ga0501079_0069498
369 Ga0501079_0079805
370 Ga0501079_0169653
371 Ga0501080_0066848
372 Ga0501080_0207865
373 Ga0501081_0001923
374 Ga0501081_0007777
375 Ga0501081_0173084
376 Ga0501081_0180235
377 Ga0501035_0021671
378 Ga0501035_0046157
379 Ga0501044_0001815
380 Ga0501044_0145540
381 Ga0501045_0022604
382 Ga0501045_0033866
383 Ga0501045_0075769
384 Ga0501045_0215223
385 nmdc:mga05p37_12104_c1
386 nmdc:mga05p37_124054_c1
387 nmdc:mga09592_10870_c1
388 nmdc:mga09592_128233_c1
389 nmdc:mga0qj67_4790_c1
390 nmdc:mga06r32_128722_c1
391 nmdc:mga06r32_29230_c1
392 nmdc:mga06r32_49177_c1
393 Ga0500643_000247
394 Ga0500641_0005156
395 Ga0500556_0000059
396 Ga0500559_0158632
397 Ga0500568_0000012
398 Ga0500573_0000555
399 Ga0500573_0011052
400 Ga0500577_0061702
401 Ga0501084_0010032
402 Ga0501084_0130895
403 Ga0501084_0321009
404 Ga0501082_0006519
405 Ga0501082_0014826
406 Ga0501082_0070746
407 Ga0501082_0143698
408 Ga0501082_0245201
409 Ga0530510_0045915
410 Ga0530510_0624306
411 2644197689
412 2587861568
413 2644032558
414 2644101370
415 2644119226
416 2644278184
417 2644457449
418 2644517496
419 2644537287
420 2644553298
421 2738868985
422 2753301208
423 2809228515
424 2812330435
425 2812362779
426 2852634104
427 2855389234
428 2904430889
429 2904503585
430 2905929921
431 2908675232
432 2909075451
433 2919039910
434 2919045187
435 2928108294
436 2928501253
437 2939657844
438 2939661611
439 2946006434
440 2964328128
441 2966927051
442 2984553388

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01061

ABC2_membrane

ABC-2 type transporter

35

244

0.91

PF12698

ABC2_membrane_3

ABC-2 family transporter protein

77

282

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
8dku-assembly1.cif.gz_B cryoem structure of the a. aeolicus wzmwzt transporter bound to the native o antigen 0.71 20 280
7r89-assembly1.cif.gz_B the structure of human abcg5/abcg8 purified from yeast 0.6973 23 282
6m96-assembly1.cif.gz_B-2 atp-bound conformation of the wzmwzt o antigen abc transporter 0.6968 20 281
8dku-assembly1.cif.gz_B cryoem structure of the a. aeolicus wzmwzt transporter bound to the native o antigen 0.6962 20 280
7r87-assembly1.cif.gz_B the structure of human abcg5-wt/abcg8-i419e 0.6942 23 282
ID Description Score Start End Superfamily
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.7313 66 282 3.40.1710.10
af_Q9VMM9_322_706_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.7214 60 266 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6735 53 279 3.40.1710.10
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.5638 66 282 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.5518 53 279 3.40.1710.10
ID Description Score Start End GO Terms
AF-A0A3P1TB23-F1-model_v4 Transport permease protein 0.9694 12 281 GO:0043190
GO:0140359
AF-A0A4Q5Z019-F1-model_v4 deleted 0.9602 142 282
AF-A0A3P1TB23-F1-model_v4 Transport permease protein 0.9589 12 281 GO:0043190
GO:0140359
AF-A0A2M9D9K4-F1-model_v4 Transport permease protein 0.9488 1 282 GO:0043190
GO:0140359
AF-A0A7K1GWB4-F1-model_v4 Transport permease protein 0.9473 20 277 GO:0043190
GO:0140359

Map