F335032
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 222 | 147 | 444 | 280 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2511231221|2512033242 |
| Length | 308 |
| Sequence | PLETAPLEPISTTLPDKKTPDTASPATAKSVTAKSGSTFYWPMRLLPASKRAAMFAIYAFCRRIDDIADEPGEPAAKRAALDVWRRDIRDLYVGGAPSGSLTAALRGAIERYGLPRAEFEALIDGMAMDVAGEEAGGMCAPDLDTLRLYCRRVAGAVGMLAIRVFDRADPATERFALALGEALQLTNILRDLAEDAELDRLYLPRELLLAAGITSDRPAEVLAHPALPQACEALADLAETRFAEARAAIGGQARGSLWAATAMMVLYHRLLRRLREAGWRDLNARVRVGRRESAWVAVRCMLGLPPAT |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 2 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 3 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 4 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 11 | 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Metagenome | Rhizosphere |
| 12 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 14 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 15 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 16 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 17 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 19 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 20 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 21 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 22 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 23 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 24 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 25 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 26 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 27 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 28 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 29 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 30 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 31 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 32 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 33 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 34 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 35 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 36 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 38 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 39 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 40 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 60 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 61 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 62 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 63 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 64 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 65 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 66 | 3300033442 | Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 | Metagenome | Nodule |
| 67 | 3300035111 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 68 | 3300035170 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 | Metagenome | Rhizosphere |
| 69 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 70 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 71 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 72 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 73 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 74 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 75 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 76 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 77 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 78 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 79 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 80 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 81 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 82 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 83 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 84 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 85 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 86 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300047471 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 98 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 99 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 100 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 101 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 102 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 103 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 104 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 105 | 3300049460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 107 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 108 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 109 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 110 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 111 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 112 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 113 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 114 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 115 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 116 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 117 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 118 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 119 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 120 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 121 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 123 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 124 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 125 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 126 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300053090 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere | Metagenome | Endosphere |
| 128 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 129 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 130 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 131 | 2511231221 | Azospirillum lipoferum 4B | Isolate | Rhizosphere |
| 132 | 2513237137 | Bradyrhizobium elkanii USDA 94 | Isolate | Nodule |
| 133 | 2517572143 | Bradyrhizobium elkanii USDA 76 | Isolate | Nodule |
| 134 | 2597490356 | Azospirillum brasilense sp7 | Isolate | Unclassified |
| 135 | 2791355197 | Bradyrhizobium sp. C9 | Isolate | Nodule |
| 136 | 2846952575 | Azospirillum brasilense sp7 | Isolate | Unclassified |
| 137 | 2848858292 | Azospirillum brasilense Az39 | Isolate | Unclassified |
| 138 | 2885374607 | Bradyrhizobium sp. NAS96.2 | Isolate | Unclassified |
| 139 | 2897803580 | Azospirillum doebereinerae GSF71 | Isolate | Unclassified |
| 140 | 2903748898 | Bradyrhizobium uaiense UFLA 03-164 | Isolate | Nodule |
| 141 | 2906610324 | |||
| 142 | 2908739725 | Bradyrhizobium sp. UFLA03-84 | Isolate | Nodule |
| 143 | 2922425934 | |||
| 144 | 3005474847 | Bradyrhizobium sp. CCBAU 53421 | Isolate | Nodule |
| 145 | 8019555841 | Bradyrhizobium sp. JR6.1 | Isolate | Nodule |
| 146 | 8019565922 | Bradyrhizobium sp. JR3.5 | Isolate | Nodule |
| 147 | 8054002106 | Azospirillum lipoferum 59b | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 92.73 |
| Metatranscriptomes | 0.45 |
| Isolates | 6.82 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 1.35 |
| Nodule | 4.05 |
| Rhizoplane | 2.25 |
| Rhizosphere | 83.78 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0.9 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | rootH1_10029073 | 3300003323 | Bacteria | 1451 |
| 2 | Ga0070658_10031125 | 3300005327 | Bacteria | 4284 |
| 3 | Ga0070658_10107199 | 3300005327 | Bacteria | 2312 |
| 4 | Ga0070658_10227540 | 3300005327 | Bacteria | 1578 |
| 5 | Ga0070683_100002101 | 3300005329 | Bacteria | 15736 |
| 6 | Ga0070670_100043779 | 3300005331 | Bacteria | 3848 |
| 7 | Ga0070682_100006964 | 3300005337 | Bacteria | 6359 |
| 8 | Ga0070669_100022632 | 3300005353 | Bacteria | 4494 |
| 9 | Ga0070671_100020345 | 3300005355 | Bacteria | 5411 |
| 10 | Ga0070659_100004593 | 3300005366 | Bacteria | 9874 |
| 11 | Ga0070714_100498455 | 3300005435 | Bacteria | 1161 |
| 12 | Ga0070713_100004774 | 3300005436 | Bacteria | 9174 |
| 13 | Ga0070710_10006279 | 3300005437 | Bacteria | 5695 |
| 14 | Ga0070711_100009847 | 3300005439 | Bacteria | 5895 |
| 15 | Ga0070681_10041551 | 3300005458 | Bacteria | 4608 |
| 16 | Ga0070681_10060980 | 3300005458 | Bacteria | 3748 |
| 17 | Ga0070679_100106046 | 3300005530 | Bacteria | 2796 |
| 18 | Ga0070679_100257973 | 3300005530 | Bacteria | 1699 |
| 19 | Ga0070684_100004527 | 3300005535 | Bacteria | 10588 |
| 20 | Ga0068853_100070028 | 3300005539 | Bacteria | 3052 |
| 21 | Ga0068853_100246452 | 3300005539 | Bacteria | 1639 |
| 22 | Ga0070665_100134288 | 3300005548 | Bacteria | 2476 |
| 23 | Ga0068855_100000006 | 3300005563 | Bacteria | 298092 |
| 24 | Ga0068855_100219288 | 3300005563 | Bacteria | 2134 |
| 25 | Ga0068855_100220099 | 3300005563 | Bacteria | 2129 |
| 26 | Ga0068855_100296681 | 3300005563 | Bacteria | 1791 |
| 27 | Ga0068855_100460704 | 3300005563 | Unclassified | 1386 |
| 28 | Ga0068856_100192740 | 3300005614 | Bacteria | 2052 |
| 29 | Ga0068852_100168265 | 3300005616 | Bacteria | 2052 |
| 30 | Ga0081539_10005148 | 3300005985 | Bacteria | 13617 |
| 31 | Ga0075366_10061449 | 3300006195 | Bacteria | 2233 |
| 32 | Ga0097621_100253309 | 3300006237 | Bacteria | 1542 |
| 33 | Ga0105240_10000357 | 3300009093 | Bacteria | 85936 |
| 34 | Ga0105240_10055702 | 3300009093 | Bacteria | 4950 |
| 35 | Ga0105240_10065230 | 3300009093 | Bacteria | 4521 |
| 36 | Ga0105240_10137189 | 3300009093 | Bacteria | 2929 |
| 37 | Ga0105240_10147612 | 3300009093 | Bacteria | 2804 |
| 38 | Ga0105240_10226666 | 3300009093 | Bacteria | 2174 |
| 39 | Ga0105240_10438849 | 3300009093 | Bacteria | 1463 |
| 40 | Ga0105240_10648458 | 3300009093 | Bacteria | 1157 |
| 41 | Ga0105245_10620517 | 3300009098 | Bacteria | 1109 |
| 42 | Ga0105247_10077642 | 3300009101 | Bacteria | 2087 |
| 43 | Ga0105241_10528217 | 3300009174 | Bacteria | 1056 |
| 44 | Ga0105242_10146315 | 3300009176 | Bacteria | 2056 |
| 45 | Ga0105242_10236135 | 3300009176 | Bacteria | 1641 |
| 46 | Ga0105248_10695023 | 3300009177 | Bacteria | 1148 |
| 47 | Ga0105237_10067631 | 3300009545 | Bacteria | 3566 |
| 48 | Ga0105237_10230693 | 3300009545 | Bacteria | 1852 |
| 49 | Ga0105237_10236275 | 3300009545 | Bacteria | 1829 |
| 50 | Ga0105237_10450938 | 3300009545 | Bacteria | 1292 |
| 51 | Ga0105238_10002885 | 3300009551 | Bacteria | 17181 |
| 52 | Ga0105238_10007157 | 3300009551 | Bacteria | 11161 |
| 53 | Ga0105238_10017133 | 3300009551 | Bacteria | 7354 |
| 54 | Ga0105238_10164709 | 3300009551 | Bacteria | 2192 |
| 55 | Ga0105238_10196380 | 3300009551 | Bacteria | 1994 |
| 56 | Ga0105238_10250429 | 3300009551 | Bacteria | 1750 |
| 57 | Ga0105238_10557696 | 3300009551 | Bacteria | 1150 |
| 58 | Ga0105239_10003705 | 3300010375 | Bacteria | 18610 |
| 59 | Ga0105239_10090558 | 3300010375 | Bacteria | 3375 |
| 60 | Ga0105239_10105651 | 3300010375 | Bacteria | 3118 |
| 61 | Ga0105239_10163666 | 3300010375 | Bacteria | 2487 |
| 62 | Ga0105239_10264403 | 3300010375 | Bacteria | 1934 |
| 63 | Ga0157370_10176572 | 3300013104 | Bacteria | 1985 |
| 64 | Ga0157369_10004254 | 3300013105 | Bacteria | 16952 |
| 65 | Ga0157369_10007512 | 3300013105 | Bacteria | 12546 |
| 66 | Ga0157369_10037294 | 3300013105 | Bacteria | 5321 |
| 67 | Ga0157369_10060032 | 3300013105 | Bacteria | 4101 |
| 68 | Ga0157369_10112351 | 3300013105 | Bacteria | 2894 |
| 69 | Ga0157378_10213897 | 3300013297 | Bacteria | 1829 |
| 70 | Ga0157376_10278084 | 3300014969 | Bacteria | 1575 |
| 71 | Ga0206354_11398752 | 3300020081 | Bacteria | 1169 |
| 72 | Ga0213876_10000629 | 3300021384 | Bacteria | 25698 |
| 73 | Ga0209233_1001901 | 3300025261 | Bacteria | 8011 |
| 74 | Ga0207647_10099245 | 3300025904 | Bacteria | 1729 |
| 75 | Ga0207645_10200874 | 3300025907 | Bacteria | 1311 |
| 76 | Ga0207705_10071799 | 3300025909 | Bacteria | 2510 |
| 77 | Ga0207705_10171532 | 3300025909 | Unclassified | 1633 |
| 78 | Ga0207695_10000004 | 3300025913 | Bacteria | 1288665 |
| 79 | Ga0207695_10006528 | 3300025913 | Bacteria | 15099 |
| 80 | Ga0207695_10033976 | 3300025913 | Bacteria | 5552 |
| 81 | Ga0207695_10083025 | 3300025913 | Bacteria | 3237 |
| 82 | Ga0207695_10185268 | 3300025913 | Bacteria | 2001 |
| 83 | Ga0207671_10034395 | 3300025914 | Bacteria | 3765 |
| 84 | Ga0207671_10239308 | 3300025914 | Bacteria | 1425 |
| 85 | Ga0207671_10362632 | 3300025914 | Bacteria | 1150 |
| 86 | Ga0207663_10028650 | 3300025916 | Bacteria | 3262 |
| 87 | Ga0207649_10018375 | 3300025920 | Bacteria | 3975 |
| 88 | Ga0207652_10166738 | 3300025921 | Bacteria | 1975 |
| 89 | Ga0207694_10000014 | 3300025924 | Bacteria | 374435 |
| 90 | Ga0207694_10038756 | 3300025924 | Bacteria | 3665 |
| 91 | Ga0207694_10328501 | 3300025924 | Bacteria | 1263 |
| 92 | Ga0207664_10726169 | 3300025929 | Bacteria | 893 |
| 93 | Ga0207644_10010347 | 3300025931 | Bacteria | 6148 |
| 94 | Ga0207686_10028992 | 3300025934 | Bacteria | 3260 |
| 95 | Ga0207691_10341825 | 3300025940 | Bacteria | 1281 |
| 96 | Ga0207661_10001260 | 3300025944 | Bacteria | 16930 |
| 97 | Ga0207667_10000051 | 3300025949 | Bacteria | 233836 |
| 98 | Ga0207667_10073501 | 3300025949 | Bacteria | 3552 |
| 99 | Ga0207667_10160826 | 3300025949 | Bacteria | 2310 |
| 100 | Ga0207667_10747248 | 3300025949 | Bacteria | 978 |
| 101 | Ga0207651_10012251 | 3300025960 | Bacteria | 4844 |
| 102 | Ga0207674_10117687 | 3300026116 | Bacteria | 2628 |
| 103 | Ga0207698_10026118 | 3300026142 | Bacteria | 4128 |
| 104 | Ga0268266_10027223 | 3300028379 | Bacteria | 4863 |
| 105 | Ga0265325_10027118 | 3300031241 | Bacteria | 3099 |
| 106 | Ga0265340_10137155 | 3300031247 | Bacteria | 1120 |
| 107 | Ga0265339_10003658 | 3300031249 | Bacteria | 10729 |
| 108 | Ga0265339_10069394 | 3300031249 | Bacteria | 1881 |
| 109 | Ga0265316_10137438 | 3300031344 | Bacteria | 1838 |
| 110 | Ga0307513_10012412 | 3300031456 | Bacteria | 10517 |
| 111 | Ga0265313_10002619 | 3300031595 | Bacteria | 15305 |
| 112 | Ga0307516_10041380 | 3300031730 | Bacteria | 4580 |
| 113 | Ga0315911_1000002 | 3300033442 | Bacteria | 926833 |
| 114 | Ga0373923_0117215 | 3300035111 | Bacteria | 1187 |
| 115 | Ga0373943_0113766 | 3300035170 | Bacteria | 1430 |
| 116 | Ga0316574_0000545 | 3300035398 | Bacteria | 15537 |
| 117 | Ga0373935_0011260 | 3300035692 | Bacteria | 5372 |
| 118 | Ga0373927_0015403 | 3300035695 | Bacteria | 5053 |
| 119 | Ga0373927_0052666 | 3300035695 | Bacteria | 2632 |
| 120 | Ga0373947_0002960 | 3300035725 | Bacteria | 10136 |
| 121 | Ga0373947_0180482 | 3300035725 | Bacteria | 1374 |
| 122 | Ga0373925_0110823 | 3300037068 | Bacteria | 2120 |
| 123 | Ga0373925_0173776 | 3300037068 | Bacteria | 1702 |
| 124 | Ga0395899_0060080 | 3300037312 | Bacteria | 2801 |
| 125 | Ga0395900_0022703 | 3300037418 | Bacteria | 6422 |
| 126 | Ga0395900_0156203 | 3300037418 | Bacteria | 2330 |
| 127 | Ga0395898_0038655 | 3300037466 | Bacteria | 4728 |
| 128 | Ga0395898_0134504 | 3300037466 | Bacteria | 2367 |
| 129 | Ga0436364_0511331 | 3300037853 | Bacteria | 1515 |
| 130 | Ga0395901_0407293 | 3300038443 | Bacteria | 1397 |
| 131 | Ga0436365_0845067 | 3300039437 | Bacteria | 1957 |
| 132 | Ga0436365_1090001 | 3300039437 | Bacteria | 1743 |
| 133 | Ga0436365_1168772 | 3300039437 | Bacteria | 186262 |
| 134 | Ga0466966_0086813 | 3300044684 | Bacteria | 1945 |
| 135 | Ga0466961_0331792 | 3300044693 | Bacteria | 927 |
| 136 | Ga0466963_0135110 | 3300044694 | Bacteria | 1706 |
| 137 | Ga0466964_0032878 | 3300044706 | Bacteria | 2063 |
| 138 | Ga0466957_0016958 | 3300044842 | Bacteria | 4262 |
| 139 | Ga0466959_0166570 | 3300045049 | Bacteria | 1547 |
| 140 | Ga0495629_0012690 | 3300046459 | Bacteria | 6101 |
| 141 | Ga0495580_0007741 | 3300046472 | Bacteria | 8611 |
| 142 | Ga0495582_0028725 | 3300046473 | Bacteria | 3052 |
| 143 | Ga0495605_0021066 | 3300046474 | Bacteria | 3458 |
| 144 | Ga0495664_0004475 | 3300046477 | Bacteria | 7649 |
| 145 | Ga0495587_0055625 | 3300046536 | Bacteria | 2330 |
| 146 | Ga0495625_0279929 | 3300046660 | Bacteria | 1074 |
| 147 | Ga0495623_0181829 | 3300046679 | Bacteria | 1221 |
| 148 | Ga0495658_0000511 | 3300046683 | Bacteria | 21296 |
| 149 | Ga0495674_0032355 | 3300047319 | Bacteria | 4744 |
| 150 | Ga0495684_0148911 | 3300047471 | Bacteria | 1751 |
| 151 | Ga0496100_0098210 | 3300048903 | Bacteria | 2012 |
| 152 | Ga0496108_0600165 | 3300048911 | Bacteria | 959 |
| 153 | Ga0496109_0528707 | 3300048912 | Bacteria | 1113 |
| 154 | Ga0496111_0244297 | 3300048914 | Bacteria | 1333 |
| 155 | Ga0496113_0227262 | 3300048916 | Bacteria | 1488 |
| 156 | Ga0496118_0194886 | 3300048921 | Bacteria | 1207 |
| 157 | Ga0496121_0122731 | 3300048924 | Bacteria | 1959 |
| 158 | Ga0496122_0009280 | 3300048925 | Bacteria | 10403 |
| 159 | Ga0495682_0002344 | 3300049460 | Bacteria | 9003 |
| 160 | Ga0501031_0022910 | 3300049568 | Bacteria | 4073 |
| 161 | Ga0501032_0089538 | 3300049569 | Bacteria | 2043 |
| 162 | Ga0501033_0026623 | 3300049570 | Bacteria | 4351 |
| 163 | Ga0501033_0044288 | 3300049570 | Bacteria | 3313 |
| 164 | Ga0501033_0062583 | 3300049570 | Bacteria | 2740 |
| 165 | Ga0501033_0118796 | 3300049570 | Bacteria | 1920 |
| 166 | Ga0501034_0218314 | 3300049571 | Bacteria | 1860 |
| 167 | Ga0501034_0401400 | 3300049571 | Bacteria | 1293 |
| 168 | Ga0501036_0069948 | 3300049572 | Bacteria | 2967 |
| 169 | Ga0501036_0106552 | 3300049572 | Bacteria | 2370 |
| 170 | Ga0501036_0255578 | 3300049572 | Bacteria | 1468 |
| 171 | Ga0501037_0017472 | 3300049573 | Bacteria | 5279 |
| 172 | Ga0501037_0049977 | 3300049573 | Bacteria | 3062 |
| 173 | Ga0501038_0062572 | 3300049574 | Bacteria | 3180 |
| 174 | Ga0501038_0095045 | 3300049574 | Bacteria | 2490 |
| 175 | Ga0501039_0000282 | 3300049575 | Bacteria | 36301 |
| 176 | Ga0501039_0128585 | 3300049575 | Bacteria | 1988 |
| 177 | Ga0501042_0048954 | 3300049578 | Bacteria | 3014 |
| 178 | Ga0501043_0146751 | 3300049579 | Bacteria | 1847 |
| 179 | Ga0501043_0176431 | 3300049579 | Bacteria | 1666 |
| 180 | Ga0501043_0430285 | 3300049579 | Bacteria | 994 |
| 181 | Ga0501047_0006363 | 3300049581 | Bacteria | 11107 |
| 182 | Ga0501047_0036694 | 3300049581 | Bacteria | 4738 |
| 183 | Ga0501047_0181652 | 3300049581 | Bacteria | 1970 |
| 184 | Ga0501047_0211995 | 3300049581 | Bacteria | 1795 |
| 185 | Ga0501067_0000579 | 3300049583 | Bacteria | 19836 |
| 186 | Ga0501069_0049077 | 3300049585 | Bacteria | 2345 |
| 187 | Ga0501070_0022957 | 3300049586 | Bacteria | 5222 |
| 188 | Ga0501070_0037963 | 3300049586 | Bacteria | 4020 |
| 189 | Ga0501073_0022451 | 3300049589 | Bacteria | 4543 |
| 190 | Ga0501074_0331670 | 3300049590 | Bacteria | 1080 |
| 191 | Ga0501079_0017273 | 3300049741 | Bacteria | 5508 |
| 192 | Ga0501035_0002839 | 3300049822 | Bacteria | 16735 |
| 193 | Ga0501035_0019539 | 3300049822 | Bacteria | 6226 |
| 194 | Ga0501035_0069990 | 3300049822 | Bacteria | 3109 |
| 195 | Ga0501035_0220291 | 3300049822 | Bacteria | 1620 |
| 196 | Ga0501044_0002118 | 3300049823 | Bacteria | 22796 |
| 197 | Ga0501044_0049180 | 3300049823 | Bacteria | 4353 |
| 198 | Ga0501044_0236654 | 3300049823 | Bacteria | 1771 |
| 199 | nmdc:mga06r32_465344_c1 | 3300050510 | Bacteria | 1243 |
| 200 | Ga0495601_0153280 | 3300053077 | Bacteria | 1505 |
| 201 | Ga0500646_0024791 | 3300053090 | Bacteria | 1616 |
| 202 | Ga0501084_0000347 | 3300054114 | Bacteria | 35283 |
| 203 | Ga0501084_0041284 | 3300054114 | Bacteria | 3859 |
| 204 | Ga0501082_0038865 | 3300060353 | Bacteria | 4105 |
| 205 | Ga0466962_0083301 | 3300061719 | Bacteria | 1530 |
| 206 | 2512033242 | 2511231221 | Bacteria | 6846400 |
| 207 | 2513856798 | 2513237137 | Bacteria | 9558895 |
| 208 | 2517891380 | 2517572143 | Bacteria | 9484767 |
| 209 | 2599106286 | 2597490356 | Bacteria | 7030811 |
| 210 | 2793066750 | 2791355197 | Bacteria | 8420563 |
| 211 | 2846956084 | 2846952575 | Bacteria | 6587527 |
| 212 | 2848861716 | 2848858292 | Bacteria | 7391279 |
| 213 | 2885374965 | 2885374607 | Bacteria | 8927485 |
| 214 | 2897809199 | 2897803580 | Bacteria | 7000062 |
| 215 | 2903753837 | 2903748898 | Bacteria | 9972761 |
| 216 | 2906616566 | |||
| 217 | 2908741734 | 2908739725 | Bacteria | 8628932 |
| 218 | 2922431414 | |||
| 219 | 3005481207 | 3005474847 | Bacteria | 9259049 |
| 220 | 8019565384 | 8019555841 | Bacteria | 9642137 |
| 221 | 8019575480 | 8019565922 | Bacteria | 9639779 |
| 222 | 8054002320 | 8054002106 | Bacteria | 7987183 |
| 223 | rootH1_10029073 | |||
| 224 | Ga0070658_10031125 | |||
| 225 | Ga0070658_10107199 | |||
| 226 | Ga0070658_10227540 | |||
| 227 | Ga0070683_100002101 | |||
| 228 | Ga0070670_100043779 | |||
| 229 | Ga0070682_100006964 | |||
| 230 | Ga0070669_100022632 | |||
| 231 | Ga0070671_100020345 | |||
| 232 | Ga0070659_100004593 | |||
| 233 | Ga0070714_100498455 | |||
| 234 | Ga0070713_100004774 | |||
| 235 | Ga0070710_10006279 | |||
| 236 | Ga0070711_100009847 | |||
| 237 | Ga0070681_10041551 | |||
| 238 | Ga0070681_10060980 | |||
| 239 | Ga0070679_100106046 | |||
| 240 | Ga0070679_100257973 | |||
| 241 | Ga0070684_100004527 | |||
| 242 | Ga0068853_100070028 | |||
| 243 | Ga0068853_100246452 | |||
| 244 | Ga0070665_100134288 | |||
| 245 | Ga0068855_100000006 | |||
| 246 | Ga0068855_100219288 | |||
| 247 | Ga0068855_100220099 | |||
| 248 | Ga0068855_100296681 | |||
| 249 | Ga0068855_100460704 | |||
| 250 | Ga0068856_100192740 | |||
| 251 | Ga0068852_100168265 | |||
| 252 | Ga0081539_10005148 | |||
| 253 | Ga0075366_10061449 | |||
| 254 | Ga0097621_100253309 | |||
| 255 | Ga0105240_10000357 | |||
| 256 | Ga0105240_10055702 | |||
| 257 | Ga0105240_10065230 | |||
| 258 | Ga0105240_10137189 | |||
| 259 | Ga0105240_10147612 | |||
| 260 | Ga0105240_10226666 | |||
| 261 | Ga0105240_10438849 | |||
| 262 | Ga0105240_10648458 | |||
| 263 | Ga0105245_10620517 | |||
| 264 | Ga0105247_10077642 | |||
| 265 | Ga0105241_10528217 | |||
| 266 | Ga0105242_10146315 | |||
| 267 | Ga0105242_10236135 | |||
| 268 | Ga0105248_10695023 | |||
| 269 | Ga0105237_10067631 | |||
| 270 | Ga0105237_10230693 | |||
| 271 | Ga0105237_10236275 | |||
| 272 | Ga0105237_10450938 | |||
| 273 | Ga0105238_10002885 | |||
| 274 | Ga0105238_10007157 | |||
| 275 | Ga0105238_10017133 | |||
| 276 | Ga0105238_10164709 | |||
| 277 | Ga0105238_10196380 | |||
| 278 | Ga0105238_10250429 | |||
| 279 | Ga0105238_10557696 | |||
| 280 | Ga0105239_10003705 | |||
| 281 | Ga0105239_10090558 | |||
| 282 | Ga0105239_10105651 | |||
| 283 | Ga0105239_10163666 | |||
| 284 | Ga0105239_10264403 | |||
| 285 | Ga0157370_10176572 | |||
| 286 | Ga0157369_10004254 | |||
| 287 | Ga0157369_10007512 | |||
| 288 | Ga0157369_10037294 | |||
| 289 | Ga0157369_10060032 | |||
| 290 | Ga0157369_10112351 | |||
| 291 | Ga0157378_10213897 | |||
| 292 | Ga0157376_10278084 | |||
| 293 | Ga0206354_11398752 | |||
| 294 | Ga0213876_10000629 | |||
| 295 | Ga0209233_1001901 | |||
| 296 | Ga0207647_10099245 | |||
| 297 | Ga0207645_10200874 | |||
| 298 | Ga0207705_10071799 | |||
| 299 | Ga0207705_10171532 | |||
| 300 | Ga0207695_10000004 | |||
| 301 | Ga0207695_10006528 | |||
| 302 | Ga0207695_10033976 | |||
| 303 | Ga0207695_10083025 | |||
| 304 | Ga0207695_10185268 | |||
| 305 | Ga0207671_10034395 | |||
| 306 | Ga0207671_10239308 | |||
| 307 | Ga0207671_10362632 | |||
| 308 | Ga0207663_10028650 | |||
| 309 | Ga0207649_10018375 | |||
| 310 | Ga0207652_10166738 | |||
| 311 | Ga0207694_10000014 | |||
| 312 | Ga0207694_10038756 | |||
| 313 | Ga0207694_10328501 | |||
| 314 | Ga0207664_10726169 | |||
| 315 | Ga0207644_10010347 | |||
| 316 | Ga0207686_10028992 | |||
| 317 | Ga0207691_10341825 | |||
| 318 | Ga0207661_10001260 | |||
| 319 | Ga0207667_10000051 | |||
| 320 | Ga0207667_10073501 | |||
| 321 | Ga0207667_10160826 | |||
| 322 | Ga0207667_10747248 | |||
| 323 | Ga0207651_10012251 | |||
| 324 | Ga0207674_10117687 | |||
| 325 | Ga0207698_10026118 | |||
| 326 | Ga0268266_10027223 | |||
| 327 | Ga0265325_10027118 | |||
| 328 | Ga0265340_10137155 | |||
| 329 | Ga0265339_10003658 | |||
| 330 | Ga0265339_10069394 | |||
| 331 | Ga0265316_10137438 | |||
| 332 | Ga0307513_10012412 | |||
| 333 | Ga0265313_10002619 | |||
| 334 | Ga0307516_10041380 | |||
| 335 | Ga0315911_1000002 | |||
| 336 | Ga0373923_0117215 | |||
| 337 | Ga0373943_0113766 | |||
| 338 | Ga0316574_0000545 | |||
| 339 | Ga0373935_0011260 | |||
| 340 | Ga0373927_0015403 | |||
| 341 | Ga0373927_0052666 | |||
| 342 | Ga0373947_0002960 | |||
| 343 | Ga0373947_0180482 | |||
| 344 | Ga0373925_0110823 | |||
| 345 | Ga0373925_0173776 | |||
| 346 | Ga0395899_0060080 | |||
| 347 | Ga0395900_0022703 | |||
| 348 | Ga0395900_0156203 | |||
| 349 | Ga0395898_0038655 | |||
| 350 | Ga0395898_0134504 | |||
| 351 | Ga0436364_0511331 | |||
| 352 | Ga0395901_0407293 | |||
| 353 | Ga0436365_0845067 | |||
| 354 | Ga0436365_1090001 | |||
| 355 | Ga0436365_1168772 | |||
| 356 | Ga0466966_0086813 | |||
| 357 | Ga0466961_0331792 | |||
| 358 | Ga0466963_0135110 | |||
| 359 | Ga0466964_0032878 | |||
| 360 | Ga0466957_0016958 | |||
| 361 | Ga0466959_0166570 | |||
| 362 | Ga0495629_0012690 | |||
| 363 | Ga0495580_0007741 | |||
| 364 | Ga0495582_0028725 | |||
| 365 | Ga0495605_0021066 | |||
| 366 | Ga0495664_0004475 | |||
| 367 | Ga0495587_0055625 | |||
| 368 | Ga0495625_0279929 | |||
| 369 | Ga0495623_0181829 | |||
| 370 | Ga0495658_0000511 | |||
| 371 | Ga0495674_0032355 | |||
| 372 | Ga0495684_0148911 | |||
| 373 | Ga0496100_0098210 | |||
| 374 | Ga0496108_0600165 | |||
| 375 | Ga0496109_0528707 | |||
| 376 | Ga0496111_0244297 | |||
| 377 | Ga0496113_0227262 | |||
| 378 | Ga0496118_0194886 | |||
| 379 | Ga0496121_0122731 | |||
| 380 | Ga0496122_0009280 | |||
| 381 | Ga0495682_0002344 | |||
| 382 | Ga0501031_0022910 | |||
| 383 | Ga0501032_0089538 | |||
| 384 | Ga0501033_0026623 | |||
| 385 | Ga0501033_0044288 | |||
| 386 | Ga0501033_0062583 | |||
| 387 | Ga0501033_0118796 | |||
| 388 | Ga0501034_0218314 | |||
| 389 | Ga0501034_0401400 | |||
| 390 | Ga0501036_0069948 | |||
| 391 | Ga0501036_0106552 | |||
| 392 | Ga0501036_0255578 | |||
| 393 | Ga0501037_0017472 | |||
| 394 | Ga0501037_0049977 | |||
| 395 | Ga0501038_0062572 | |||
| 396 | Ga0501038_0095045 | |||
| 397 | Ga0501039_0000282 | |||
| 398 | Ga0501039_0128585 | |||
| 399 | Ga0501042_0048954 | |||
| 400 | Ga0501043_0146751 | |||
| 401 | Ga0501043_0176431 | |||
| 402 | Ga0501043_0430285 | |||
| 403 | Ga0501047_0006363 | |||
| 404 | Ga0501047_0036694 | |||
| 405 | Ga0501047_0181652 | |||
| 406 | Ga0501047_0211995 | |||
| 407 | Ga0501067_0000579 | |||
| 408 | Ga0501069_0049077 | |||
| 409 | Ga0501070_0022957 | |||
| 410 | Ga0501070_0037963 | |||
| 411 | Ga0501073_0022451 | |||
| 412 | Ga0501074_0331670 | |||
| 413 | Ga0501079_0017273 | |||
| 414 | Ga0501035_0002839 | |||
| 415 | Ga0501035_0019539 | |||
| 416 | Ga0501035_0069990 | |||
| 417 | Ga0501035_0220291 | |||
| 418 | Ga0501044_0002118 | |||
| 419 | Ga0501044_0049180 | |||
| 420 | Ga0501044_0236654 | |||
| 421 | nmdc:mga06r32_465344_c1 | |||
| 422 | Ga0495601_0153280 | |||
| 423 | Ga0500646_0024791 | |||
| 424 | Ga0501084_0000347 | |||
| 425 | Ga0501084_0041284 | |||
| 426 | Ga0501082_0038865 | |||
| 427 | Ga0466962_0083301 | |||
| 428 | 2512033242 | |||
| 429 | 2513856798 | |||
| 430 | 2517891380 | |||
| 431 | 2599106286 | |||
| 432 | 2793066750 | |||
| 433 | 2846956084 | |||
| 434 | 2848861716 | |||
| 435 | 2885374965 | |||
| 436 | 2897809199 | |||
| 437 | 2903753837 | |||
| 438 | 2906616566 | |||
| 439 | 2908741734 | |||
| 440 | 2922431414 | |||
| 441 | 3005481207 | |||
| 442 | 8019565384 | |||
| 443 | 8019575480 | |||
| 444 | 8054002320 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4hd1-assembly1.cif.gz_A | crystal structure of squalene synthase hpnc from alicyclobacillus acidocaldarius | 0.8887 | 10 | 262 |
| 5iys-assembly1.cif.gz_A | crystal structure of a dehydrosqualene synthase in complex with ligand | 0.8704 | 10 | 276 |
| 3adz-assembly1.cif.gz_A | crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with intermediate pspp | 0.8575 | 9 | 276 |
| 2zcr-assembly1.cif.gz_A | crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bisphosphonate bph-698 | 0.8491 | 9 | 276 |
| 2zy1-assembly1.cif.gz_A | crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bisphosphonate bph-830 | 0.8477 | 9 | 276 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q330K2_57_309_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9089 | 20 | 252 | 1.10.600.10 |
| 4hd1A00 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8838 | 10 | 256 | 1.10.600.10 |
| af_Q54E48_68_332_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.877 | 12 | 252 | 1.10.600.10 |
| af_Q9VYS5_51_308_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8741 | 10 | 252 | 1.10.600.10 |
| af_P9WHP3_1_280_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8676 | 12 | 277 | 1.10.600.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A536ZL13-F1-model_v4 | Presqualene diphosphate synthase HpnD (EC 2.5.1.103) | 0.9927 | 12 | 275 |
GO:0004311
GO:0016117 GO:0016767 GO:0051996 |
| AF-A0A401TUB4-F1-model_v4 | 15-cis-phytoene synthase (EC 2.5.1.32) | 0.9925 | 78 | 279 |
GO:0016117
GO:0016765 |
| AF-A0A226WXL7-F1-model_v4 | Phytoene synthase | 0.9891 | 11 | 278 |
GO:0004311
GO:0016117 GO:0016767 GO:0051996 |
| AF-Q2T2Q1-F1-model_v4 | Phytoene synthase, putative | 0.9889 | 11 | 279 |
GO:0004311
GO:0016117 GO:0016767 GO:0051996 |
| AF-A0A1H0QF59-F1-model_v4 | Farnesyl-diphosphate farnesyltransferase | 0.9883 | 26 | 279 |
GO:0004311
GO:0016117 GO:0016767 GO:0051996 |