F333452

General Info

Members Datasets Scaffolds Average Seq Length
221 157 199 317

Family's Representative Sequence

Representative Sequence 3300025986|Ga0207658_10296304|Ga0207658_102963042
Length 379
Sequence MTINYETLAGLQAWRESIEESIPAYVRPAAYAVGIATIGHSGQILDTRYPVVNTDVHLLPAAVLAQVLGRTHGTASHRLDHSQLQEAVAALAPAEACREIDHPNLAAWRVMLEVVAQPQPPGGQRVLVASFIDAFTDPPIDGHDVYLRLHLLSRRLVRPHGVNLDGIFGKLNTVVWTNVGPFEVDGFELARIRVEAAGQRVFVNSIDKFPRMTDYVVPTGVRIANADRVRLGAHLSEGTVVMHEGFCNYNAGTLGASMVEGRISAGVVVGEGSDVGGGASIMGTLSGGGKEVISIGKACLIGANAGIGISLGDNCIVEAGLYVTSGSRVRLPDGTVVKARDLSGRSGILFRRDSQTGSIDALPNGDNPNWGGLNAALHA

Samples

Sample ID Description Type Environment
1 2643221604 Nocardioides sp. Root190 Isolate Unclassified
2 2643221617 Nocardioides sp. Root79 Isolate Unclassified
3 2643221620 Nocardioides sp. Root240 Isolate Unclassified
4 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
5 2643221711 Terrabacter sp. Root85 Isolate Unclassified
6 2738541305 Nocardioides sp. CF167 Isolate Unclassified
7 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
8 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
9 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
10 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
11 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
12 2883087390 Paraburkholderia guartelaensis CNPSo 3008 Isolate Unclassified
13 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
14 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
15 2935883170 Bradyrhizobium sp. S3.12.5 Isolate Nodule
16 2936055302 Bradyrhizobium sp. JR4.1 Isolate Nodule
17 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
18 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
19 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
20 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
22 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
23 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
34 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
66 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
69 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
70 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
71 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
72 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
76 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
79 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
80 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
83 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
87 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
88 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
89 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
92 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
93 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
96 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
97 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
98 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
99 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
100 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
101 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
102 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
103 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
104 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
105 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
106 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
107 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
108 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
109 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
110 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
113 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
114 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
115 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
116 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
117 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
122 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
125 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
128 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
129 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
130 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
131 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
132 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
133 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
148 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
149 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
150 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
151 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
152 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
153 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
154 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
155 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
156 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
157 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.05
Metatranscriptomes 0
Isolates 9.95

Biome Distribution

Category Percentage (%)
Aerial Root 0.9
Bulb 0
Endosphere 2.71
Nodule 0.9
Rhizoplane 12.67
Rhizosphere 73.3
Stem 0
Stem Tuber 0
Unclassified 9.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10019524 3300003203 Bacteria 2759
2 Ga0055540_1004466 3300003792 Bacteria 6282
3 Ga0055540_1004623 3300003792 Bacteria 6111
4 Ga0070668_100252045 3300005347 Bacteria 1466
5 Ga0070667_100000109 3300005367 Bacteria 105260
6 Ga0070662_100093179 3300005457 Bacteria 2266
7 Ga0070698_100000905 3300005471 Bacteria 32562
8 Ga0070665_100043059 3300005548 Bacteria 4539
9 Ga0068855_100305537 3300005563 Bacteria 1761
10 Ga0068859_100003399 3300005617 Bacteria 16192
11 Ga0068859_100020832 3300005617 Bacteria 6581
12 Ga0068861_100417638 3300005719 Bacteria 1194
13 Ga0068863_100000123 3300005841 Bacteria 80999
14 Ga0068860_100000175 3300005843 Bacteria 105260
15 Ga0068862_100000091 3300005844 Bacteria 107015
16 Ga0081455_10013858 3300005937 Bacteria 7929
17 Ga0081455_10021780 3300005937 Bacteria 6004
18 Ga0081539_10000085 3300005985 Bacteria 217816
19 Ga0075427_10006478 3300006194 Bacteria 1697
20 Ga0075428_100002261 3300006844 Bacteria 20852
21 Ga0075428_100026359 3300006844 Bacteria 6434
22 Ga0075428_100070604 3300006844 Bacteria 3818
23 Ga0075430_100001902 3300006846 Bacteria 17115
24 Ga0075430_100005787 3300006846 Bacteria 10431
25 Ga0075430_100051125 3300006846 Bacteria 3484
26 Ga0075431_100008741 3300006847 Bacteria 10147
27 Ga0075431_100033058 3300006847 Bacteria 5330
28 Ga0075431_100092802 3300006847 Bacteria 3116
29 Ga0075433_10004480 3300006852 Bacteria 10883
30 Ga0075434_100001913 3300006871 Bacteria 18047
31 Ga0075429_100004811 3300006880 Bacteria 11625
32 Ga0068865_100067013 3300006881 Bacteria 2534
33 Ga0075436_100011988 3300006914 Bacteria 5946
34 Ga0097620_100003399 3300006931 Bacteria 16192
35 Ga0097620_100020832 3300006931 Bacteria 6581
36 Ga0075435_100018986 3300007076 Bacteria 5240
37 Ga0105245_10689722 3300009098 Bacteria 1054
38 Ga0105247_10000070 3300009101 Bacteria 115098
39 Ga0105247_10011477 3300009101 Bacteria 5342
40 Ga0114129_10044044 3300009147 Bacteria 6278
41 Ga0114129_10439122 3300009147 Bacteria 1714
42 Ga0105248_10000331 3300009177 Bacteria 55929
43 Ga0105249_10000020 3300009553 Bacteria 260634
44 Ga0105249_10144443 3300009553 Bacteria 2285
45 Ga0163162_10120006 3300013306 Bacteria 2733
46 Ga0163163_10039101 3300014325 Bacteria 4628
47 Ga0209673_1012019 3300025273 Bacteria 3522
48 Ga0209051_1000582 3300025303 Bacteria 43455
49 Ga0209051_1002060 3300025303 Bacteria 15247
50 Ga0207710_10000010 3300025900 Bacteria 482087
51 Ga0207710_10005709 3300025900 Bacteria 5344
52 Ga0207681_10001388 3300025923 Bacteria 15652
53 Ga0207706_10065366 3300025933 Bacteria 3203
54 Ga0207711_10000522 3300025941 Bacteria 39517
55 Ga0207712_10000010 3300025961 Bacteria 455972
56 Ga0207658_10000257 3300025986 Bacteria 55345
57 Ga0207658_10072235 3300025986 Bacteria 2615
58 Ga0207658_10296304 3300025986 Bacteria 1392
59 Ga0207677_10205884 3300026023 Bacteria 1567
60 Ga0207703_10581161 3300026035 Bacteria 1058
61 Ga0207641_10001365 3300026088 Bacteria 24147
62 Ga0207675_100364303 3300026118 Bacteria 1419
63 Ga0207428_10000496 3300027907 Bacteria 47043
64 Ga0268265_10000105 3300028380 Bacteria 105463
65 Ga0268264_10000237 3300028381 Bacteria 105274
66 Ga0265338_10000092 3300028800 Bacteria 168538
67 Ga0265338_10015114 3300028800 Bacteria 8516
68 Ga0265320_10050099 3300031240 Bacteria 2031
69 Ga0265325_10017502 3300031241 Bacteria 3981
70 Ga0265325_10025030 3300031241 Bacteria 3242
71 Ga0265340_10004950 3300031247 Bacteria 7406
72 Ga0265339_10004517 3300031249 Bacteria 9476
73 Ga0265327_10006097 3300031251 Bacteria 9772
74 Ga0307408_100050960 3300031548 Bacteria 2979
75 Ga0265313_10022996 3300031595 Bacteria 3367
76 Ga0265342_10011395 3300031712 Bacteria 6090
77 Ga0307405_10049246 3300031731 Bacteria 2603
78 Ga0307405_10101275 3300031731 Bacteria 1932
79 Ga0307413_10043956 3300031824 Bacteria 2636
80 Ga0307413_10088668 3300031824 Bacteria 2007
81 Ga0307518_10049331 3300031838 Bacteria 3060
82 Ga0307410_10018184 3300031852 Bacteria 4242
83 Ga0307410_10053074 3300031852 Bacteria 2741
84 Ga0307410_10142908 3300031852 Bacteria 1772
85 Ga0307406_10094787 3300031901 Bacteria 2018
86 Ga0307407_10006790 3300031903 Bacteria 5126
87 Ga0307407_10019175 3300031903 Bacteria 3477
88 Ga0307407_10028191 3300031903 Bacteria 2998
89 Ga0307412_10049433 3300031911 Bacteria 2771
90 Ga0307409_100118687 3300031995 Bacteria 2235
91 Ga0307409_100263286 3300031995 Bacteria 1584
92 Ga0307416_100017038 3300032002 Bacteria 5069
93 Ga0307416_100133480 3300032002 Bacteria 2240
94 Ga0307414_10140797 3300032004 Bacteria 1888
95 Ga0307411_10084783 3300032005 Bacteria 2192
96 Ga0307411_10133975 3300032005 Bacteria 1815
97 Ga0307415_100057629 3300032126 Bacteria 2670
98 Ga0307415_100209235 3300032126 Bacteria 1554
99 Ga0316574_0073842 3300035398 Bacteria 2157
100 Ga0395901_0219453 3300038443 Bacteria 1988
101 Ga0395901_0238800 3300038443 Bacteria 1896
102 Ga0400483_149086 3300039062 Bacteria 21516
103 Ga0466957_0036654 3300044842 Bacteria 2950
104 Ga0466967_0028070 3300045976 Bacteria 4693
105 Ga0466967_0085016 3300045976 Bacteria 2864
106 Ga0495629_0183184 3300046459 Bacteria 1451
107 Ga0495651_0018209 3300046462 Bacteria 5438
108 Ga0495653_0042788 3300046463 Bacteria 3524
109 Ga0495662_0095990 3300046476 Bacteria 1449
110 Ga0495664_0017369 3300046477 Bacteria 4112
111 Ga0495628_0026971 3300046516 Bacteria 4676
112 Ga0495652_0015388 3300046529 Bacteria 6850
113 Ga0495640_0016219 3300046533 Bacteria 5577
114 Ga0495587_0006944 3300046536 Bacteria 7354
115 Ga0495645_0043300 3300046543 Bacteria 3283
116 Ga0495667_0019342 3300046559 Bacteria 4595
117 Ga0495634_0061571 3300046642 Bacteria 2494
118 Ga0495635_0068624 3300046663 Bacteria 2431
119 Ga0495635_0135719 3300046663 Bacteria 1677
120 Ga0495657_0033850 3300046675 Bacteria 3553
121 Ga0495599_0010457 3300046678 Bacteria 5677
122 Ga0495646_0048527 3300046680 Bacteria 2578
123 Ga0495613_0096346 3300046689 Bacteria 2140
124 Ga0495674_0039102 3300047319 Bacteria 4253
125 Ga0495675_0126847 3300047444 Bacteria 1588
126 Ga0495684_0021713 3300047471 Bacteria 4942
127 Ga0495684_0106357 3300047471 Bacteria 2120
128 Ga0495602_0030906 3300048088 Bacteria 5070
129 Ga0495614_0213880 3300048089 Bacteria 875
130 Ga0496100_0012919 3300048903 Bacteria 4801
131 Ga0496101_0004680 3300048904 Bacteria 8664
132 Ga0496101_0014477 3300048904 Bacteria 5302
133 Ga0496102_0000059 3300048905 Bacteria 168633
134 Ga0496102_0012702 3300048905 Bacteria 7295
135 Ga0496102_0235292 3300048905 Bacteria 1727
136 Ga0496103_0000096 3300048906 Bacteria 97798
137 Ga0496103_0000657 3300048906 Bacteria 26145
138 Ga0496103_0092191 3300048906 Bacteria 1912
139 Ga0496104_0031546 3300048907 Bacteria 4928
140 Ga0496104_0072316 3300048907 Bacteria 3279
141 Ga0496104_0572027 3300048907 Bacteria 1040
142 Ga0496105_0002880 3300048908 Bacteria 12606
143 Ga0496105_0041285 3300048908 Bacteria 3802
144 Ga0496105_0269391 3300048908 Bacteria 1376
145 Ga0496107_0026948 3300048910 Bacteria 4079
146 Ga0496107_0075280 3300048910 Bacteria 2457
147 Ga0496109_0078223 3300048912 Bacteria 3045
148 Ga0496109_0333233 3300048912 Bacteria 1433
149 Ga0496110_0196303 3300048913 Bacteria 1833
150 Ga0496110_0277966 3300048913 Bacteria 1525
151 Ga0496110_0380189 3300048913 Bacteria 1287
152 Ga0496110_0433594 3300048913 Bacteria 1198
153 Ga0496112_0022623 3300048915 Bacteria 5993
154 Ga0496112_0038756 3300048915 Bacteria 4655
155 Ga0496112_0453272 3300048915 Bacteria 1220
156 Ga0496114_0006892 3300048917 Bacteria 8950
157 Ga0496114_0331169 3300048917 Bacteria 1346
158 Ga0496117_0009877 3300048920 Bacteria 8785
159 Ga0496118_0002176 3300048921 Bacteria 27275
160 Ga0496119_0130555 3300048922 Bacteria 1370
161 Ga0496121_0008202 3300048924 Bacteria 12390
162 Ga0496121_0063525 3300048924 Bacteria 3016
163 Ga0496125_0011747 3300048928 Bacteria 8729
164 Ga0496126_0006442 3300048929 Bacteria 13082
165 Ga0501032_0001126 3300049569 Bacteria 21355
166 Ga0501034_0001443 3300049571 Bacteria 31525
167 Ga0501034_0005212 3300049571 Bacteria 14263
168 Ga0501034_0041350 3300049571 Bacteria 4663
169 Ga0501036_0005212 3300049572 Bacteria 10511
170 Ga0501036_0023245 3300049572 Bacteria 5219
171 Ga0501037_0000338 3300049573 Bacteria 39545
172 Ga0501037_0014894 3300049573 Bacteria 5721
173 Ga0501038_0003359 3300049574 Bacteria 14921
174 Ga0501038_0090377 3300049574 Bacteria 2566
175 Ga0501039_0003844 3300049575 Bacteria 11276
176 Ga0501042_0028619 3300049578 Bacteria 3928
177 Ga0501043_0000159 3300049579 Bacteria 61151
178 Ga0501043_0137053 3300049579 Bacteria 1917
179 Ga0501046_0021824 3300049580 Bacteria 5278
180 Ga0501047_0040723 3300049581 Bacteria 4492
181 Ga0501048_0078554 3300049582 Bacteria 2329
182 Ga0501035_0012971 3300049822 Bacteria 7689
183 Ga0501044_0029870 3300049823 Bacteria 5746
184 Ga0501044_0040965 3300049823 Bacteria 4824
185 Ga0501044_0062874 3300049823 Bacteria 3793
186 Ga0501045_0082574 3300049824 Bacteria 2370
187 Ga0501212_002716 3300049851 Bacteria 2160
188 nmdc:mga05p37_14120_c1 3300050507 Bacteria 9586
189 nmdc:mga05p37_298065_c1 3300050507 Bacteria 1917
190 nmdc:mga05p37_374164_c1 3300050507 Bacteria 1671
191 nmdc:mga09592_188179_c1 3300050508 Bacteria 1787
192 nmdc:mga09592_96917_c1 3300050508 Bacteria 2524
193 nmdc:mga0qj67_132264_c1 3300050509 Bacteria 2021
194 nmdc:mga0qj67_189878_c1 3300050509 Bacteria 1670
195 nmdc:mga06r32_2333_c1 3300050510 Bacteria 17005
196 nmdc:mga06r32_7273_c1 3300050510 Bacteria 9972
197 Ga0495601_0056903 3300053077 Bacteria 2477
198 Ga0500556_0079338 3300053104 Bacteria 1238
199 Ga0501082_0023906 3300060353 Bacteria 5269

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048089 Ga0495614_0213880 Ga0495614_0213880_88_855 249
2 3300046459 Ga0495629_0183184 Ga0495629_0183184_121_1224 265
3 3300046689 Ga0495613_0096346 Ga0495613_0096346_736_1854 269
4 3300048913 Ga0496110_0277966 Ga0496110_0277966_98_1216 269
5 3300046476 Ga0495662_0095990 Ga0495662_0095990_208_1326 275
6 3300046663 Ga0495635_0135719 Ga0495635_0135719_278_1396 275
7 3300047319 Ga0495674_0039102 Ga0495674_0039102_2472_3590 275
8 3300047471 Ga0495684_0106357 Ga0495684_0106357_291_1409 275
9 3300032126 Ga0307415_100057629 Ga0307415_1000576291 276
10 3300048908 Ga0496105_0269391 Ga0496105_0269391_13_1125 277
11 3300005471 Ga0070698_100000905 Ga0070698_1000009054 279
12 3300035398 Ga0316574_0073842 Ga0316574_0073842_44_982 286
13 3300048907 Ga0496104_0072316 Ga0496104_0072316_1452_2369 286
14 3300048908 Ga0496105_0041285 Ga0496105_0041285_1528_2445 286
15 3300031241 Ga0265325_10025030 Ga0265325_100250302 292
16 3300038443 Ga0395901_0219453 Ga0395901_0219453_225_1169 292
17 3300048913 Ga0496110_0433594 Ga0496110_0433594_170_1084 292
18 3300048915 Ga0496112_0038756 Ga0496112_0038756_697_1611 292
19 3300048915 Ga0496112_0022623 Ga0496112_0022623_641_1558 293
20 3300031838 Ga0307518_10049331 Ga0307518_100493311 294
21 3300047444 Ga0495675_0126847 Ga0495675_0126847_520_1458 295
22 3300038443 Ga0395901_0238800 Ga0395901_0238800_914_1834 296
23 3300003792 Ga0055540_1004466 Ga0055540_10044662 297
24 3300003792 Ga0055540_1004623 Ga0055540_10046233 297
25 3300005367 Ga0070667_100000109 Ga0070667_100000109100 297
26 3300005548 Ga0070665_100043059 Ga0070665_1000430593 297
27 3300005617 Ga0068859_100003399 Ga0068859_1000033993 297
28 3300005841 Ga0068863_100000123 Ga0068863_10000012310 297
29 3300005843 Ga0068860_100000175 Ga0068860_10000017519 297
30 3300005844 Ga0068862_100000091 Ga0068862_100000091103 297
31 3300006931 Ga0097620_100003399 Ga0097620_10000339914 297
32 3300025273 Ga0209673_1012019 Ga0209673_10120192 297
33 3300025303 Ga0209051_1000582 Ga0209051_100058241 297
34 3300025303 Ga0209051_1002060 Ga0209051_10020607 297
35 3300025900 Ga0207710_10000010 Ga0207710_10000010376 297
36 3300025923 Ga0207681_10001388 Ga0207681_100013884 297
37 3300025941 Ga0207711_10000522 Ga0207711_100005221 297
38 3300025961 Ga0207712_10000010 Ga0207712_1000001018 297
39 3300025986 Ga0207658_10000257 Ga0207658_100002572 297
40 3300026035 Ga0207703_10581161 Ga0207703_105811611 297
41 3300026088 Ga0207641_10001365 Ga0207641_1000136510 297
42 3300028380 Ga0268265_10000105 Ga0268265_1000010518 297
43 3300028381 Ga0268264_10000237 Ga0268264_10000237100 297
44 3300053104 Ga0500556_0079338 Ga0500556_0079338_102_1022 297
45 iso_pu_bacteria 2808606700 2810364281 299
46 iso_pu_bacteria 2861520306 2861521387 299
47 iso_pu_bacteria 8056054917 8056055828 299
48 3300028800 Ga0265338_10015114 Ga0265338_100151146 300
49 3300031240 Ga0265320_10050099 Ga0265320_100500992 300
50 3300031241 Ga0265325_10017502 Ga0265325_100175025 300
51 3300031247 Ga0265340_10004950 Ga0265340_100049508 300
52 3300031249 Ga0265339_10004517 Ga0265339_100045178 300
53 3300031595 Ga0265313_10022996 Ga0265313_100229963 300
54 3300031712 Ga0265342_10011395 Ga0265342_100113953 300
55 3300025986 Ga0207658_10072235 Ga0207658_100722351 301
56 3300031995 Ga0307409_100118687 Ga0307409_1001186873 301
57 iso_pu_bacteria 2643221604 2644035224 301
58 iso_pu_bacteria 2902837492 2902843858 301
59 3300039062 Ga0400483_149086 Ga0400483_149086_17048_18046 302
60 3300048913 Ga0496110_0380189 Ga0496110_0380189_331_1269 302
61 iso_pu_bacteria 2643221617 2644099380 302
62 iso_pu_bacteria 2643221620 2644116426 302
63 iso_pu_bacteria 2738541305 2738867645 302
64 iso_pu_bacteria 2811994874 2812331899 302
65 iso_pu_bacteria 8055034563 8055035653 302
66 iso_pu_bacteria 8055037949 8055038113 302
67 3300049571 Ga0501034_0041350 Ga0501034_0041350_26_967 303
68 3300060353 Ga0501082_0023906 Ga0501082_0023906_2738_3679 303
69 iso_pu_bacteria 2808606439 2809195191 303
70 3300006844 Ga0075428_100026359 Ga0075428_1000263592 304
71 3300006846 Ga0075430_100005787 Ga0075430_1000057877 304
72 3300006847 Ga0075431_100008741 Ga0075431_1000087417 304
73 3300050507 nmdc:mga05p37_14120_c1 nmdc:mga05p37_14120_c1_8594_9544 304
74 3300050508 nmdc:mga09592_96917_c1 nmdc:mga09592_96917_c1_1110_2060 304
75 3300050509 nmdc:mga0qj67_132264_c1 nmdc:mga0qj67_132264_c1_208_1158 304
76 3300050510 nmdc:mga06r32_7273_c1 nmdc:mga06r32_7273_c1_20_970 304
77 iso_pu_bacteria 2643221711 2644607417 304
78 3300009101 Ga0105247_10000070 Ga0105247_1000007018 305
79 3300009177 Ga0105248_10000331 Ga0105248_1000033142 305
80 3300009553 Ga0105249_10000020 Ga0105249_10000020247 305
81 3300014325 Ga0163163_10039101 Ga0163163_100391011 305
82 3300044842 Ga0466957_0036654 Ga0466957_0036654_1157_2101 305
83 3300048903 Ga0496100_0012919 Ga0496100_0012919_2751_3695 305
84 3300048904 Ga0496101_0004680 Ga0496101_0004680_5670_6614 305
85 3300048906 Ga0496103_0000657 Ga0496103_0000657_15349_16293 305
86 3300048910 Ga0496107_0026948 Ga0496107_0026948_1794_2738 305
87 3300048920 Ga0496117_0009877 Ga0496117_0009877_4261_5205 305
88 3300048921 Ga0496118_0002176 Ga0496118_0002176_13095_14039 305
89 3300048924 Ga0496121_0008202 Ga0496121_0008202_7755_8699 305
90 3300048928 Ga0496125_0011747 Ga0496125_0011747_7550_8494 305
91 3300048929 Ga0496126_0006442 Ga0496126_0006442_4100_5044 305
92 3300049569 Ga0501032_0001126 Ga0501032_0001126_15728_16672 305
93 3300049571 Ga0501034_0001443 Ga0501034_0001443_29239_30183 305
94 3300049572 Ga0501036_0005212 Ga0501036_0005212_981_1925 305
95 3300049573 Ga0501037_0000338 Ga0501037_0000338_17863_18807 305
96 3300049574 Ga0501038_0090377 Ga0501038_0090377_51_995 305
97 3300049575 Ga0501039_0003844 Ga0501039_0003844_9109_10053 305
98 3300049579 Ga0501043_0000159 Ga0501043_0000159_48591_49535 305
99 3300049823 Ga0501044_0040965 Ga0501044_0040965_2546_3490 305
100 iso_pu_bacteria 2870782633 2870783443 305
101 iso_pu_bacteria 2935883170 2935883666 305
102 iso_pu_bacteria 2936055302 2936057178 305
103 iso_pu_bacteria 2995726249 2995727613 305
104 iso_pu_bacteria 2643221657 2644321437 306
105 3300006846 Ga0075430_100001902 Ga0075430_10000190212 307
106 3300049571 Ga0501034_0005212 Ga0501034_0005212_10510_11469 307
107 3300049572 Ga0501036_0023245 Ga0501036_0023245_951_1910 307
108 3300049573 Ga0501037_0014894 Ga0501037_0014894_2138_3097 307
109 3300049574 Ga0501038_0003359 Ga0501038_0003359_12546_13505 307
110 3300049578 Ga0501042_0028619 Ga0501042_0028619_1245_2204 307
111 3300049579 Ga0501043_0137053 Ga0501043_0137053_123_1082 307
112 3300049580 Ga0501046_0021824 Ga0501046_0021824_2477_3436 307
113 3300049581 Ga0501047_0040723 Ga0501047_0040723_1813_2772 307
114 3300049582 Ga0501048_0078554 Ga0501048_0078554_1121_2080 307
115 3300049822 Ga0501035_0012971 Ga0501035_0012971_3048_4007 307
116 3300049823 Ga0501044_0029870 Ga0501044_0029870_4424_5383 307
117 3300049824 Ga0501045_0082574 Ga0501045_0082574_222_1181 307
118 3300031251 Ga0265327_10006097 Ga0265327_100060977 308
119 3300031995 Ga0307409_100263286 Ga0307409_1002632862 308
120 3300045976 Ga0466967_0028070 Ga0466967_0028070_690_1619 308
121 3300046462 Ga0495651_0018209 Ga0495651_0018209_2850_3857 308
122 3300046463 Ga0495653_0042788 Ga0495653_0042788_2259_3266 308
123 3300046477 Ga0495664_0017369 Ga0495664_0017369_1031_2038 308
124 3300046516 Ga0495628_0026971 Ga0495628_0026971_1173_2180 308
125 3300046529 Ga0495652_0015388 Ga0495652_0015388_3122_4129 308
126 3300046533 Ga0495640_0016219 Ga0495640_0016219_482_1489 308
127 3300046536 Ga0495587_0006944 Ga0495587_0006944_1007_2014 308
128 3300046543 Ga0495645_0043300 Ga0495645_0043300_1213_2220 308
129 3300046559 Ga0495667_0019342 Ga0495667_0019342_1436_2443 308
130 3300046642 Ga0495634_0061571 Ga0495634_0061571_1103_2110 308
131 3300046663 Ga0495635_0068624 Ga0495635_0068624_74_1081 308
132 3300046675 Ga0495657_0033850 Ga0495657_0033850_408_1415 308
133 3300046678 Ga0495599_0010457 Ga0495599_0010457_1821_2828 308
134 3300046680 Ga0495646_0048527 Ga0495646_0048527_754_1761 308
135 3300047471 Ga0495684_0021713 Ga0495684_0021713_1086_2093 308
136 3300048088 Ga0495602_0030906 Ga0495602_0030906_2075_3082 308
137 3300048904 Ga0496101_0014477 Ga0496101_0014477_1978_2910 308
138 3300048905 Ga0496102_0012702 Ga0496102_0012702_3963_4895 308
139 3300048906 Ga0496103_0092191 Ga0496103_0092191_749_1681 308
140 3300048907 Ga0496104_0031546 Ga0496104_0031546_2401_3333 308
141 3300048908 Ga0496105_0002880 Ga0496105_0002880_5716_6648 308
142 3300048910 Ga0496107_0075280 Ga0496107_0075280_102_1034 308
143 3300048912 Ga0496109_0333233 Ga0496109_0333233_259_1191 308
144 3300048915 Ga0496112_0453272 Ga0496112_0453272_108_1040 308
145 3300048917 Ga0496114_0006892 Ga0496114_0006892_5991_6923 308
146 3300048922 Ga0496119_0130555 Ga0496119_0130555_226_1158 308
147 3300053077 Ga0495601_0056903 Ga0495601_0056903_487_1611 308
148 iso_pu_bacteria 2883087390 2883092555 308
149 3300005617 Ga0068859_100020832 Ga0068859_1000208326 309
150 3300006931 Ga0097620_100020832 Ga0097620_1000208326 309
151 3300009101 Ga0105247_10011477 Ga0105247_100114777 309
152 3300025900 Ga0207710_10005709 Ga0207710_100057093 309
153 3300048905 Ga0496102_0000059 Ga0496102_0000059_7830_8777 309
154 3300048906 Ga0496103_0000096 Ga0496103_0000096_12756_13703 309
155 3300048924 Ga0496121_0063525 Ga0496121_0063525_120_1067 309
156 3300049823 Ga0501044_0062874 Ga0501044_0062874_1215_2342 310
157 3300009098 Ga0105245_10689722 Ga0105245_106897221 311
158 3300025986 Ga0207658_10296304 Ga0207658_102963042 311
159 3300045976 Ga0466967_0085016 Ga0466967_0085016_1611_2597 311
160 3300048905 Ga0496102_0235292 Ga0496102_0235292_57_1037 311
161 3300048907 Ga0496104_0572027 Ga0496104_0572027_13_993 311
162 3300048912 Ga0496109_0078223 Ga0496109_0078223_121_1101 311
163 3300048913 Ga0496110_0196303 Ga0496110_0196303_489_1469 311
164 3300048917 Ga0496114_0331169 Ga0496114_0331169_82_1062 311
165 iso_pu_bacteria 2905926851 2905927816 311
166 3300003203 JGI25406J46586_10019524 JGI25406J46586_100195242 312
167 3300005347 Ga0070668_100252045 Ga0070668_1002520452 312
168 3300005457 Ga0070662_100093179 Ga0070662_1000931792 312
169 3300005563 Ga0068855_100305537 Ga0068855_1003055372 312
170 3300005719 Ga0068861_100417638 Ga0068861_1004176381 312
171 3300005937 Ga0081455_10013858 Ga0081455_100138584 312
172 3300005937 Ga0081455_10021780 Ga0081455_100217804 312
173 3300005985 Ga0081539_10000085 Ga0081539_1000008576 312
174 3300006194 Ga0075427_10006478 Ga0075427_100064782 312
175 3300006844 Ga0075428_100002261 Ga0075428_10000226125 312
176 3300006844 Ga0075428_100070604 Ga0075428_1000706042 312
177 3300006846 Ga0075430_100051125 Ga0075430_1000511253 312
178 3300006847 Ga0075431_100033058 Ga0075431_1000330585 312
179 3300006847 Ga0075431_100092802 Ga0075431_1000928022 312
180 3300006852 Ga0075433_10004480 Ga0075433_1000448010 312
181 3300006871 Ga0075434_100001913 Ga0075434_10000191311 312
182 3300006880 Ga0075429_100004811 Ga0075429_10000481110 312
183 3300006881 Ga0068865_100067013 Ga0068865_1000670132 312
184 3300006914 Ga0075436_100011988 Ga0075436_1000119883 312
185 3300007076 Ga0075435_100018986 Ga0075435_1000189864 312
186 3300009147 Ga0114129_10044044 Ga0114129_100440444 312
187 3300009147 Ga0114129_10439122 Ga0114129_104391222 312
188 3300009553 Ga0105249_10144443 Ga0105249_101444432 312
189 3300013306 Ga0163162_10120006 Ga0163162_101200063 312
190 3300025933 Ga0207706_10065366 Ga0207706_100653663 312
191 3300026023 Ga0207677_10205884 Ga0207677_102058842 312
192 3300026118 Ga0207675_100364303 Ga0207675_1003643032 312
193 3300027907 Ga0207428_10000496 Ga0207428_1000049644 312
194 3300028800 Ga0265338_10000092 Ga0265338_10000092113 312
195 3300031548 Ga0307408_100050960 Ga0307408_1000509604 312
196 3300031731 Ga0307405_10049246 Ga0307405_100492463 312
197 3300031731 Ga0307405_10101275 Ga0307405_101012752 312
198 3300031824 Ga0307413_10043956 Ga0307413_100439562 312
199 3300031824 Ga0307413_10088668 Ga0307413_100886682 312
200 3300031852 Ga0307410_10018184 Ga0307410_100181842 312
201 3300031852 Ga0307410_10053074 Ga0307410_100530742 312
202 3300031852 Ga0307410_10142908 Ga0307410_101429082 312
203 3300031901 Ga0307406_10094787 Ga0307406_100947872 312
204 3300031903 Ga0307407_10006790 Ga0307407_100067904 312
205 3300031903 Ga0307407_10019175 Ga0307407_100191753 312
206 3300031903 Ga0307407_10028191 Ga0307407_100281914 312
207 3300031911 Ga0307412_10049433 Ga0307412_100494332 312
208 3300032002 Ga0307416_100017038 Ga0307416_1000170383 312
209 3300032002 Ga0307416_100133480 Ga0307416_1001334802 312
210 3300032004 Ga0307414_10140797 Ga0307414_101407972 312
211 3300032005 Ga0307411_10084783 Ga0307411_100847832 312
212 3300032005 Ga0307411_10133975 Ga0307411_101339752 312
213 3300032126 Ga0307415_100209235 Ga0307415_1002092351 312
214 3300049851 Ga0501212_002716 Ga0501212_002716_750_1694 312
215 3300050507 nmdc:mga05p37_298065_c1 nmdc:mga05p37_298065_c1_64_1086 312
216 3300050507 nmdc:mga05p37_374164_c1 nmdc:mga05p37_374164_c1_611_1603 312
217 3300050508 nmdc:mga09592_188179_c1 nmdc:mga09592_188179_c1_252_1244 312
218 3300050509 nmdc:mga0qj67_189878_c1 nmdc:mga0qj67_189878_c1_389_1381 312
219 3300050510 nmdc:mga06r32_2333_c1 nmdc:mga06r32_2333_c1_14892_15884 312
220 iso_pu_bacteria 2984576629 2984578899 312
221 iso_pu_bacteria 2990256926 2990257849 312

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14789

THDPS_M

Tetrahydrodipicolinate N-succinyltransferase middle

171

211

0.99

PF14602

Hexapep_2

Hexapeptide repeat of succinyl-transferase

292

325

0.97

PF14790

THDPS_N

Tetrahydrodipicolinate N-succinyltransferase N-terminal

11

169

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5e3q-assembly1.cif.gz_A crystal structure of dapd in complex with succinyl-coa from corynebacterium glutamicum 0.9749 9 301
5e3q-assembly1.cif.gz_A crystal structure of dapd in complex with succinyl-coa from corynebacterium glutamicum 0.9679 9 301
5e3p-assembly1.cif.gz_A crystal structure of dapd from corynebacterium glutamicum 0.9624 9 299
5e3p-assembly1.cif.gz_A crystal structure of dapd from corynebacterium glutamicum 0.9557 9 299
3fsy-assembly1.cif.gz_C structure of tetrahydrodipicolinate n-succinyltransferase (rv1201c;dapd) in complex with succinyl-coa from mycobacterium tuberculosis 0.9529 8 298
ID Description Score Start End Superfamily
3fsxE03 Mainly Beta;3 Solenoid;UDP N-Acetylglucosamine Acyltransferase; domain 1;Hexapeptide repeat proteins 1.001 146 298 2.160.10.10
3fsxE03 Mainly Beta;3 Solenoid;UDP N-Acetylglucosamine Acyltransferase; domain 1;Hexapeptide repeat proteins 0.9939 146 298 2.160.10.10
af_P9WP21_111_150_3.30.60.70 Alpha Beta;2-Layer Sandwich;Wheat Germ Agglutinin (Isolectin 2); domain 1;Trimeric LpxA-like enzymes 0.974 105 145 3.30.60.70
af_P9WP21_111_150_3.30.60.70 Alpha Beta;2-Layer Sandwich;Wheat Germ Agglutinin (Isolectin 2); domain 1;Trimeric LpxA-like enzymes 0.9511 105 145 3.30.60.70
5e3rA01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9305 9 103 3.30.70.2010
ID Description Score Start End GO Terms
AF-A0A6G3VKW6-F1-model_v4 deleted 1.01 230 296
AF-A0A0B8QFM5-F1-model_v4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) 1.004 146 216 GO:0008666
AF-A0A354XMX3-F1-model_v4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 0.9912 134 218 GO:0016740
AF-A0A315S6X3-F1-model_v4 deleted 0.9895 136 253
AF-A0A7Y0H4R5-F1-model_v4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 0.9892 7 122 GO:0005737
GO:0016740

Feature Viewer

pLDDT pTM Quality
92.89 0.9 High
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Predicted Structure (AlphaFold2)

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