F331508

General Info

Members Datasets Scaffolds Average Seq Length
219 174 210 214

Family's Representative Sequence

Representative Sequence 3300048924|Ga0496121_0018762|Ga0496121_0018762_4138_4908
Length 251
Sequence MRAGALNPATGAAFHWHGGDAATPRITIPLLRRQTMAGSFIPGIGAFKQRMPQREDALPGRATPMPLHNAHYISGAKLRDAYPGLARVQFGLGCFWGAERKFWSLPGVAVTAVGYSGGYTPNPTYREVCSGQTGHAETVLVVYDPAKIGFDDLLKVFWESHDPTQGMRQGNDTGSQYRSAIYCEDEGQSSRDAFQAKLREAGFGEITTEITAPPAPEFYYAEDDHQQYLAKNPAGYCGLGGTGVSCPIGAL

Samples

Sample ID Description Type Environment
1 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
2 2626541554 Frankia sp. AvcI.1 Isolate Nodule
3 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
4 2643221593 Lysobacter sp. Root690 Isolate Unclassified
5 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
6 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
7 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
8 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
9 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
10 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
11 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
12 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
13 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
14 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
15 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
18 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
19 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
20 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
21 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
30 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
34 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
42 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
49 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
50 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027424 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027552 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
89 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
90 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
91 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
92 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
93 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
94 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
95 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
96 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
97 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
98 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
99 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
100 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
101 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
102 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
103 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
104 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
105 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
106 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
107 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
108 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
109 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
110 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
111 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
112 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
113 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
114 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
115 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
116 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
117 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
118 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
119 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
120 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
121 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
122 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
123 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
124 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
125 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
126 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
127 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
128 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
129 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
130 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
131 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
134 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
135 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
146 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
147 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
148 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
149 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
150 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
151 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
152 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
153 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
154 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
156 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
157 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
158 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
159 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
160 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
161 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
162 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
163 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
164 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
165 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
166 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
167 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
168 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
169 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
170 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
171 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
172 641522639 Methylobacterium sp. 4-46 Isolate Nodule
173 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
174 8054920844 Frankia tisae Agncl-8 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95.89
Metatranscriptomes 0
Isolates 4.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.05
Nodule 2.28
Rhizoplane 5.02
Rhizosphere 76.71
Stem 0
Stem Tuber 0
Unclassified 5.94

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10004924 3300003187 Bacteria 6973
2 Ga0055526_1000072 3300003771 Bacteria 94464
3 Ga0055537_1000665 3300003773 Bacteria 18074
4 Ga0055524_1000173 3300003775 Bacteria 73388
5 Ga0055534_1000628 3300003784 Bacteria 18074
6 Ga0055528_1000085 3300003790 Bacteria 73426
7 Ga0070677_10157429 3300005333 Bacteria 1063
8 Ga0070680_100001028 3300005336 Bacteria 19967
9 Ga0068868_100040151 3300005338 Bacteria 3641
10 Ga0070660_100003431 3300005339 Bacteria 10902
11 Ga0070668_100005419 3300005347 Bacteria 9472
12 Ga0070669_100299229 3300005353 Bacteria 1293
13 Ga0070674_100032776 3300005356 Bacteria 3452
14 Ga0070700_100634105 3300005441 Bacteria 842
15 Ga0070694_100327205 3300005444 Bacteria 1181
16 Ga0070681_10000265 3300005458 Bacteria 41693
17 Ga0070679_100000045 3300005530 Bacteria 93900
18 Ga0070679_100036803 3300005530 Bacteria 4857
19 Ga0068853_100686674 3300005539 Bacteria 976
20 Ga0070672_100659090 3300005543 Bacteria 914
21 Ga0070665_100276052 3300005548 Bacteria 1683
22 Ga0070704_100565954 3300005549 Bacteria 995
23 Ga0070664_100012806 3300005564 Bacteria 6823
24 Ga0068857_100218750 3300005577 Bacteria 1739
25 Ga0068856_100181644 3300005614 Bacteria 2117
26 Ga0068852_100892705 3300005616 Bacteria 906
27 Ga0068861_100554925 3300005719 Bacteria 1047
28 Ga0068870_10460722 3300005840 Bacteria 840
29 Ga0075364_10063632 3300006051 Bacteria 2422
30 Ga0097621_100549651 3300006237 Bacteria 1051
31 Ga0075431_100505813 3300006847 Bacteria 1199
32 Ga0075431_100992230 3300006847 Bacteria 807
33 Ga0075433_10013332 3300006852 Bacteria 6679
34 Ga0075433_10418938 3300006852 Bacteria 1181
35 Ga0075434_100788247 3300006871 Bacteria 967
36 Ga0075429_100243194 3300006880 Bacteria 1576
37 Ga0068865_100006967 3300006881 Bacteria 6931
38 Ga0075436_100240679 3300006914 Bacteria 1287
39 Ga0105250_10031100 3300009092 Bacteria 2143
40 Ga0111539_10785065 3300009094 Bacteria 1108
41 Ga0114129_10007259 3300009147 Bacteria 15777
42 Ga0114129_10028789 3300009147 Bacteria 7871
43 Ga0114129_10324969 3300009147 Bacteria 2044
44 Ga0105243_10234158 3300009148 Bacteria 1631
45 Ga0105032_101579 3300009979 Bacteria 2068
46 Ga0157380_10272343 3300014326 Bacteria 1544
47 Ga0157380_10599187 3300014326 Bacteria 1090
48 Ga0157376_11280070 3300014969 Bacteria 763
49 Ga0183360_10001 3300015689 Bacteria 3943671
50 Ga0213876_10355135 3300021384 Bacteria 780
51 Ga0207425_1009033 3300025245 Bacteria 2507
52 Ga0209565_1000001 3300025263 Bacteria 2950419
53 Ga0209565_1007582 3300025263 Bacteria 2915
54 Ga0209673_1000001 3300025273 Bacteria 3176258
55 Ga0209675_1000001 3300025291 Bacteria 2950293
56 Ga0209676_1000436 3300025292 Bacteria 72143
57 Ga0209025_1000006 3300025294 Bacteria 1153444
58 Ga0209564_1000001 3300025295 Bacteria 3176258
59 Ga0209758_1021248 3300025297 Bacteria 3033
60 Ga0209256_1000006 3300025299 Bacteria 1250310
61 Ga0209257_1001357 3300025304 Bacteria 29616
62 Ga0207645_10000894 3300025907 Bacteria 24729
63 Ga0207643_10086481 3300025908 Bacteria 1822
64 Ga0207707_10000114 3300025912 Bacteria 81766
65 Ga0207660_10000883 3300025917 Bacteria 19784
66 Ga0207660_10352920 3300025917 Bacteria 1179
67 Ga0207652_10000075 3300025921 Bacteria 107831
68 Ga0207652_10104377 3300025921 Bacteria 2507
69 Ga0207681_10455387 3300025923 Bacteria 1041
70 Ga0207659_10095963 3300025926 Bacteria 2225
71 Ga0207700_10174691 3300025928 Bacteria 1795
72 Ga0207664_10071670 3300025929 Bacteria 2792
73 Ga0207664_10161712 3300025929 Bacteria 1910
74 Ga0207706_10115186 3300025933 Bacteria 2364
75 Ga0207706_10140777 3300025933 Bacteria 2122
76 Ga0207669_10446030 3300025937 Bacteria 1024
77 Ga0207691_10001977 3300025940 Bacteria 20050
78 Ga0207661_10095839 3300025944 Bacteria 2482
79 Ga0207679_10209037 3300025945 Bacteria 1635
80 Ga0207651_10244763 3300025960 Bacteria 1464
81 Ga0207668_10518094 3300025972 Bacteria 1028
82 Ga0207677_10221073 3300026023 Bacteria 1519
83 Ga0207702_10191585 3300026078 Bacteria 1890
84 Ga0207648_10002610 3300026089 Bacteria 19314
85 Ga0207648_10324154 3300026089 Bacteria 1385
86 Ga0207674_10181149 3300026116 Bacteria 2058
87 Ga0207675_100004789 3300026118 Bacteria 13036
88 Ga0207675_100380643 3300026118 Bacteria 1388
89 Ga0209984_1016228 3300027424 Bacteria 993
90 Ga0209982_1010976 3300027552 Bacteria 1348
91 Ga0209971_1000544 3300027682 Bacteria 9883
92 Ga0209966_1034867 3300027695 Bacteria 1030
93 Ga0209974_10006104 3300027876 Bacteria 4218
94 Ga0268266_10199126 3300028379 Bacteria 1832
95 Ga0265318_10014863 3300028577 Bacteria 3257
96 Ga0265318_10039504 3300028577 Bacteria 1800
97 Ga0265338_10121833 3300028800 Bacteria 2077
98 Ga0265325_10043063 3300031241 Bacteria 2357
99 Ga0265340_10281453 3300031247 Bacteria 739
100 Ga0265339_10062619 3300031249 Bacteria 1999
101 Ga0265327_10007726 3300031251 Bacteria 8223
102 Ga0265316_10448813 3300031344 Bacteria 925
103 Ga0265313_10004705 3300031595 Bacteria 10304
104 Ga0316575_10017788 3300031665 Bacteria 2704
105 Ga0316576_10263217 3300031727 Bacteria 1293
106 Ga0307516_10002457 3300031730 Bacteria 24766
107 Ga0316577_10061877 3300031733 Bacteria 2089
108 Ga0307406_10041033 3300031901 Bacteria 2881
109 Ga0307416_100020857 3300032002 Bacteria 4687
110 Ga0307416_100836745 3300032002 Bacteria 1018
111 Ga0316580_10048892 3300032139 Bacteria 1303
112 Ga0373934_0272233 3300035086 Bacteria 701
113 Ga0373923_0294593 3300035111 Bacteria 767
114 Ga0316574_0097357 3300035398 Bacteria 1880
115 Ga0373935_0234081 3300035692 Bacteria 1280
116 Ga0316584_0001401 3300036712 Bacteria 14399
117 Ga0395900_0109415 3300037418 Bacteria 2839
118 Ga0395898_0050381 3300037466 Bacteria 4075
119 Ga0395898_0307799 3300037466 Bacteria 1511
120 Ga0395898_0686599 3300037466 Bacteria 966
121 Ga0436364_1509580 3300037853 Bacteria 36008
122 Ga0395901_0073125 3300038443 Bacteria 3575
123 Ga0439436_0104368 3300041404 Bacteria 790
124 Ga0439466_0037159 3300041411 Bacteria 1641
125 Ga0439434_0179055 3300042435 Bacteria 710
126 Ga0466970_0015299 3300044765 Bacteria 3945
127 Ga0466957_0405652 3300044842 Bacteria 933
128 Ga0466960_0000181 3300044901 Bacteria 21653
129 Ga0466960_0144700 3300044901 Bacteria 1265
130 Ga0466960_0299664 3300044901 Bacteria 905
131 Ga0466967_0107179 3300045976 Bacteria 2563
132 Ga0495592_0311826 3300046454 Bacteria 1019
133 Ga0495629_0230508 3300046459 Bacteria 1277
134 Ga0495633_0022672 3300046558 Bacteria 3120
135 Ga0495658_0096325 3300046683 Bacteria 1760
136 Ga0495680_0246718 3300047322 Bacteria 1267
137 Ga0496101_0512307 3300048904 Bacteria 948
138 Ga0496106_0759861 3300048909 Bacteria 770
139 Ga0496110_1129104 3300048913 Bacteria 692
140 Ga0496112_0009678 3300048915 Bacteria 8698
141 Ga0496112_0026581 3300048915 Bacteria 5573
142 Ga0496112_0198203 3300048915 Bacteria 1968
143 Ga0496112_0210700 3300048915 Bacteria 1901
144 Ga0496113_0018535 3300048916 Bacteria 4851
145 Ga0496113_0397123 3300048916 Bacteria 1107
146 Ga0496113_1027416 3300048916 Bacteria 648
147 Ga0496115_0220518 3300048918 Bacteria 1565
148 Ga0496118_0160065 3300048921 Bacteria 1393
149 Ga0496119_0028917 3300048922 Bacteria 3771
150 Ga0496119_0119729 3300048922 Bacteria 1449
151 Ga0496121_0018762 3300048924 Bacteria 6952
152 Ga0496121_0052274 3300048924 Bacteria 3433
153 Ga0496123_0024184 3300048926 Bacteria 4624
154 Ga0496126_0158740 3300048929 Bacteria 1934
155 Ga0501033_0004244 3300049570 Bacteria 11525
156 Ga0501034_0040855 3300049571 Bacteria 4693
157 Ga0501034_0044562 3300049571 Bacteria 4485
158 Ga0501034_0375104 3300049571 Bacteria 1348
159 Ga0501036_0057988 3300049572 Bacteria 3281
160 Ga0501036_0069258 3300049572 Bacteria 2985
161 Ga0501037_0016406 3300049573 Bacteria 5451
162 Ga0501038_0627245 3300049574 Bacteria 811
163 Ga0501039_0548406 3300049575 Bacteria 907
164 Ga0501040_0098968 3300049576 Bacteria 2033
165 Ga0501041_0119828 3300049577 Bacteria 1635
166 Ga0501047_0146677 3300049581 Bacteria 2236
167 Ga0501048_0081586 3300049582 Bacteria 2282
168 Ga0501070_0278303 3300049586 Bacteria 1366
169 Ga0501071_0143649 3300049587 Bacteria 1778
170 Ga0501071_0168216 3300049587 Bacteria 1641
171 Ga0501072_0002839 3300049588 Bacteria 12998
172 Ga0501072_0035108 3300049588 Bacteria 3930
173 Ga0501072_0554778 3300049588 Bacteria 907
174 Ga0501074_0233804 3300049590 Bacteria 1308
175 Ga0501074_0251699 3300049590 Bacteria 1256
176 Ga0501075_0117621 3300049591 Bacteria 2021
177 Ga0501075_0243356 3300049591 Bacteria 1371
178 Ga0501076_0254002 3300049592 Bacteria 1439
179 Ga0501079_0172154 3300049741 Bacteria 1688
180 Ga0501079_0201923 3300049741 Bacteria 1553
181 Ga0501079_0236686 3300049741 Bacteria 1427
182 Ga0501079_0381408 3300049741 Bacteria 1105
183 Ga0501079_0414481 3300049741 Bacteria 1057
184 Ga0501080_0273759 3300049742 Bacteria 1536
185 Ga0501081_0070684 3300049743 Bacteria 2432
186 Ga0501044_0000592 3300049823 Bacteria 44003
187 Ga0501044_0005616 3300049823 Bacteria 13932
188 Ga0501045_0631295 3300049824 Bacteria 792
189 nmdc:mga00v17_53310_c1 3300050491 Bacteria 2465
190 nmdc:mga05p37_53669_c1 3300050507 Bacteria 4957
191 nmdc:mga05p37_53708_c1 3300050507 Bacteria 4956
192 nmdc:mga09592_231740_c1 3300050508 Bacteria 1600
193 nmdc:mga0qj67_60599_c1 3300050509 Bacteria 3004
194 nmdc:mga06r32_112068_c1 3300050510 Bacteria 2685
195 nmdc:mga06r32_456019_c1 3300050510 Bacteria 1258
196 nmdc:mga06r32_557120_c1 3300050510 Bacteria 1120
197 nmdc:mga06r32_960153_c1 3300050510 Bacteria 809
198 nmdc:mga08y16_572208_c1 3300050511 Bacteria 1141
199 nmdc:mga0n895_1077273_c1 3300050512 Bacteria 782
200 nmdc:mga0rr50_222751_c1 3300050513 Bacteria 1558
201 nmdc:mga0a205_307542_c1 3300050515 Bacteria 1457
202 Ga0495619_0083525 3300053085 Bacteria 2154
203 Ga0500566_0002004 3300053094 Bacteria 12013
204 Ga0500616_0003316 3300053153 Bacteria 12408
205 Ga0500634_0004367 3300053161 Bacteria 6517
206 Ga0501084_0402735 3300054114 Bacteria 1156
207 Ga0501084_0560311 3300054114 Bacteria 966
208 Ga0501082_0071293 3300060353 Bacteria 2992
209 Ga0501082_0692223 3300060353 Bacteria 892
210 Ga0530510_0453609 3300061734 Bacteria 969

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300035692 Ga0373935_0234081 Ga0373935_0234081_229_777 169
2 3300037853 Ga0436364_1509580 Ga0436364_1509580_33578_34150 182
3 3300048922 Ga0496119_0119729 Ga0496119_0119729_17_574 182
4 3300049741 Ga0501079_0381408 Ga0501079_0381408_468_1022 182
5 3300050510 nmdc:mga06r32_960153_c1 nmdc:mga06r32_960153_c1_225_791 182
6 3300006852 Ga0075433_10418938 Ga0075433_104189382 184
7 3300006871 Ga0075434_100788247 Ga0075434_1007882472 184
8 3300032002 Ga0307416_100836745 Ga0307416_1008367451 188
9 3300031344 Ga0265316_10448813 Ga0265316_104488132 190
10 3300035086 Ga0373934_0272233 Ga0373934_0272233_109_690 190
11 3300048913 Ga0496110_1129104 Ga0496110_1129104_29_613 190
12 3300048916 Ga0496113_1027416 Ga0496113_1027416_26_607 190
13 3300048921 Ga0496118_0160065 Ga0496118_0160065_781_1362 190
14 3300050513 nmdc:mga0rr50_222751_c1 nmdc:mga0rr50_222751_c1_961_1542 190
15 3300027695 Ga0209966_1034867 Ga0209966_10348672 192
16 3300021384 Ga0213876_10355135 Ga0213876_103551351 200
17 3300031251 Ga0265327_10007726 Ga0265327_100077262 200
18 3300049572 Ga0501036_0069258 Ga0501036_0069258_1532_2188 200
19 3300049577 Ga0501041_0119828 Ga0501041_0119828_755_1411 200
20 3300049582 Ga0501048_0081586 Ga0501048_0081586_604_1260 200
21 3300049587 Ga0501071_0143649 Ga0501071_0143649_822_1478 200
22 3300049590 Ga0501074_0251699 Ga0501074_0251699_13_645 200
23 3300049591 Ga0501075_0243356 Ga0501075_0243356_71_727 200
24 3300049741 Ga0501079_0172154 Ga0501079_0172154_381_1037 200
25 3300049742 Ga0501080_0273759 Ga0501080_0273759_148_804 200
26 3300049743 Ga0501081_0070684 Ga0501081_0070684_674_1330 200
27 3300060353 Ga0501082_0071293 Ga0501082_0071293_1651_2307 200
28 3300009148 Ga0105243_10234158 Ga0105243_102341582 203
29 3300014326 Ga0157380_10272343 Ga0157380_102723432 203
30 3300049575 Ga0501039_0548406 Ga0501039_0548406_157_813 203
31 3300049576 Ga0501040_0098968 Ga0501040_0098968_616_1272 203
32 3300049588 Ga0501072_0035108 Ga0501072_0035108_1485_2141 203
33 3300049741 Ga0501079_0414481 Ga0501079_0414481_10_639 203
34 3300049824 Ga0501045_0631295 Ga0501045_0631295_108_764 203
35 3300050510 nmdc:mga06r32_112068_c1 nmdc:mga06r32_112068_c1_28_642 203
36 3300050510 nmdc:mga06r32_456019_c1 nmdc:mga06r32_456019_c1_507_1121 203
37 3300061734 Ga0530510_0453609 Ga0530510_0453609_42_698 203
38 3300006847 Ga0075431_100992230 Ga0075431_1009922301 204
39 3300015689 Ga0183360_10001 Ga0183360_100012828 204
40 3300025263 Ga0209565_1007582 Ga0209565_10075822 204
41 3300049590 Ga0501074_0233804 Ga0501074_0233804_670_1296 204
42 3300037418 Ga0395900_0109415 Ga0395900_0109415_2113_2778 205
43 3300037466 Ga0395898_0307799 Ga0395898_0307799_360_1025 205
44 3300041411 Ga0439466_0037159 Ga0439466_0037159_162_827 205
45 3300048918 Ga0496115_0220518 Ga0496115_0220518_848_1513 205
46 3300009147 Ga0114129_10028789 Ga0114129_100287893 208
47 3300050507 nmdc:mga05p37_53669_c1 nmdc:mga05p37_53669_c1_3250_3906 208
48 3300050512 nmdc:mga0n895_1077273_c1 nmdc:mga0n895_1077273_c1_31_687 208
49 3300050515 nmdc:mga0a205_307542_c1 nmdc:mga0a205_307542_c1_672_1328 208
50 3300003771 Ga0055526_1000072 Ga0055526_100007276 209
51 3300003773 Ga0055537_1000665 Ga0055537_100066511 209
52 3300003775 Ga0055524_1000173 Ga0055524_100017362 209
53 3300003784 Ga0055534_1000628 Ga0055534_10006288 209
54 3300003790 Ga0055528_1000085 Ga0055528_100008562 209
55 3300025263 Ga0209565_1000001 Ga0209565_10000011059 209
56 3300025273 Ga0209673_1000001 Ga0209673_10000011059 209
57 3300025291 Ga0209675_1000001 Ga0209675_10000011474 209
58 3300025295 Ga0209564_1000001 Ga0209564_10000011636 209
59 3300025299 Ga0209256_1000006 Ga0209256_100000672 209
60 iso_pu_bacteria 2545555834 2545678081 209
61 iso_pu_bacteria 2626541554 2626635590 209
62 iso_pu_bacteria 641522639 641642404 209
63 iso_pu_bacteria 8054913762 8054919335 209
64 iso_pu_bacteria 8054920844 8054924042 209
65 3300005539 Ga0068853_100686674 Ga0068853_1006866741 211
66 3300005564 Ga0070664_100012806 Ga0070664_1000128066 211
67 3300005616 Ga0068852_100892705 Ga0068852_1008927051 211
68 3300006847 Ga0075431_100505813 Ga0075431_1005058132 211
69 3300006852 Ga0075433_10013332 Ga0075433_100133324 211
70 3300006880 Ga0075429_100243194 Ga0075429_1002431943 211
71 3300006914 Ga0075436_100240679 Ga0075436_1002406792 211
72 3300009147 Ga0114129_10007259 Ga0114129_100072596 211
73 3300025933 Ga0207706_10140777 Ga0207706_101407772 211
74 3300025945 Ga0207679_10209037 Ga0207679_102090372 211
75 3300048915 Ga0496112_0198203 Ga0496112_0198203_316_990 211
76 3300050507 nmdc:mga05p37_53708_c1 nmdc:mga05p37_53708_c1_291_938 211
77 3300050508 nmdc:mga09592_231740_c1 nmdc:mga09592_231740_c1_913_1560 211
78 3300050510 nmdc:mga06r32_557120_c1 nmdc:mga06r32_557120_c1_122_769 211
79 iso_pu_bacteria 2643221581 2643915154 211
80 3300005549 Ga0070704_100565954 Ga0070704_1005659541 212
81 3300009094 Ga0111539_10785065 Ga0111539_107850651 212
82 3300031241 Ga0265325_10043063 Ga0265325_100430632 212
83 3300031247 Ga0265340_10281453 Ga0265340_102814531 212
84 3300031249 Ga0265339_10062619 Ga0265339_100626192 212
85 3300031595 Ga0265313_10004705 Ga0265313_1000470513 212
86 3300035111 Ga0373923_0294593 Ga0373923_0294593_29_697 212
87 3300048904 Ga0496101_0512307 Ga0496101_0512307_203_853 212
88 3300049588 Ga0501072_0554778 Ga0501072_0554778_130_774 212
89 3300049741 Ga0501079_0236686 Ga0501079_0236686_73_717 212
90 3300050511 nmdc:mga08y16_572208_c1 nmdc:mga08y16_572208_c1_438_1106 212
91 3300053094 Ga0500566_0002004 Ga0500566_0002004_10965_11609 212
92 3300005333 Ga0070677_10157429 Ga0070677_101574292 213
93 3300005336 Ga0070680_100001028 Ga0070680_1000010286 213
94 3300005339 Ga0070660_100003431 Ga0070660_1000034316 213
95 3300005347 Ga0070668_100005419 Ga0070668_1000054199 213
96 3300005353 Ga0070669_100299229 Ga0070669_1002992292 213
97 3300005356 Ga0070674_100032776 Ga0070674_1000327762 213
98 3300005441 Ga0070700_100634105 Ga0070700_1006341051 213
99 3300005444 Ga0070694_100327205 Ga0070694_1003272052 213
100 3300005458 Ga0070681_10000265 Ga0070681_1000026522 213
101 3300005530 Ga0070679_100000045 Ga0070679_10000004566 213
102 3300005530 Ga0070679_100036803 Ga0070679_1000368034 213
103 3300005543 Ga0070672_100659090 Ga0070672_1006590902 213
104 3300005577 Ga0068857_100218750 Ga0068857_1002187502 213
105 3300005719 Ga0068861_100554925 Ga0068861_1005549251 213
106 3300005840 Ga0068870_10460722 Ga0068870_104607222 213
107 3300006881 Ga0068865_100006967 Ga0068865_1000069675 213
108 3300014326 Ga0157380_10599187 Ga0157380_105991871 213
109 3300025907 Ga0207645_10000894 Ga0207645_1000089415 213
110 3300025908 Ga0207643_10086481 Ga0207643_100864813 213
111 3300025912 Ga0207707_10000114 Ga0207707_1000011464 213
112 3300025917 Ga0207660_10000883 Ga0207660_1000088314 213
113 3300025917 Ga0207660_10352920 Ga0207660_103529202 213
114 3300025921 Ga0207652_10000075 Ga0207652_1000007548 213
115 3300025921 Ga0207652_10104377 Ga0207652_101043772 213
116 3300025923 Ga0207681_10455387 Ga0207681_104553872 213
117 3300025926 Ga0207659_10095963 Ga0207659_100959632 213
118 3300025928 Ga0207700_10174691 Ga0207700_101746912 213
119 3300025929 Ga0207664_10071670 Ga0207664_100716703 213
120 3300025929 Ga0207664_10161712 Ga0207664_101617121 213
121 3300025933 Ga0207706_10115186 Ga0207706_101151863 213
122 3300025937 Ga0207669_10446030 Ga0207669_104460301 213
123 3300025940 Ga0207691_10001977 Ga0207691_1000197714 213
124 3300025944 Ga0207661_10095839 Ga0207661_100958394 213
125 3300025960 Ga0207651_10244763 Ga0207651_102447631 213
126 3300025972 Ga0207668_10518094 Ga0207668_105180942 213
127 3300026089 Ga0207648_10002610 Ga0207648_1000261011 213
128 3300026089 Ga0207648_10324154 Ga0207648_103241541 213
129 3300026116 Ga0207674_10181149 Ga0207674_101811493 213
130 3300026118 Ga0207675_100004789 Ga0207675_1000047898 213
131 3300027424 Ga0209984_1016228 Ga0209984_10162281 213
132 3300027552 Ga0209982_1010976 Ga0209982_10109762 213
133 3300027682 Ga0209971_1000544 Ga0209971_10005444 213
134 3300027876 Ga0209974_10006104 Ga0209974_100061041 213
135 3300028577 Ga0265318_10039504 Ga0265318_100395042 213
136 3300031730 Ga0307516_10002457 Ga0307516_100024576 213
137 3300042435 Ga0439434_0179055 Ga0439434_0179055_41_694 213
138 3300046454 Ga0495592_0311826 Ga0495592_0311826_80_733 213
139 3300046683 Ga0495658_0096325 Ga0495658_0096325_198_848 213
140 3300048909 Ga0496106_0759861 Ga0496106_0759861_34_687 213
141 3300048915 Ga0496112_0026581 Ga0496112_0026581_4877_5533 213
142 3300048916 Ga0496113_0018535 Ga0496113_0018535_3993_4646 213
143 3300048916 Ga0496113_0397123 Ga0496113_0397123_204_860 213
144 3300049570 Ga0501033_0004244 Ga0501033_0004244_2745_3422 213
145 3300049571 Ga0501034_0044562 Ga0501034_0044562_52_714 213
146 3300049571 Ga0501034_0375104 Ga0501034_0375104_573_1235 213
147 3300049572 Ga0501036_0057988 Ga0501036_0057988_1858_2526 213
148 3300049573 Ga0501037_0016406 Ga0501037_0016406_1117_1794 213
149 3300049581 Ga0501047_0146677 Ga0501047_0146677_1324_1977 213
150 3300049587 Ga0501071_0168216 Ga0501071_0168216_588_1247 213
151 3300049588 Ga0501072_0002839 Ga0501072_0002839_749_1402 213
152 3300049591 Ga0501075_0117621 Ga0501075_0117621_227_895 213
153 3300049592 Ga0501076_0254002 Ga0501076_0254002_770_1426 213
154 3300049741 Ga0501079_0201923 Ga0501079_0201923_341_1009 213
155 3300049823 Ga0501044_0000592 Ga0501044_0000592_4839_5516 213
156 3300049823 Ga0501044_0005616 Ga0501044_0005616_6892_7542 213
157 3300050509 nmdc:mga0qj67_60599_c1 nmdc:mga0qj67_60599_c1_1501_2145 213
158 3300054114 Ga0501084_0402735 Ga0501084_0402735_444_1097 213
159 3300054114 Ga0501084_0560311 Ga0501084_0560311_188_856 213
160 3300060353 Ga0501082_0692223 Ga0501082_0692223_37_705 213
161 3300005548 Ga0070665_100276052 Ga0070665_1002760524 214
162 3300005614 Ga0068856_100181644 Ga0068856_1001816442 214
163 3300006237 Ga0097621_100549651 Ga0097621_1005496512 214
164 3300009092 Ga0105250_10031100 Ga0105250_100311003 214
165 3300009147 Ga0114129_10324969 Ga0114129_103249692 214
166 3300026078 Ga0207702_10191585 Ga0207702_101915852 214
167 3300026118 Ga0207675_100380643 Ga0207675_1003806432 214
168 3300028379 Ga0268266_10199126 Ga0268266_101991264 214
169 3300031665 Ga0316575_10017788 Ga0316575_100177883 214
170 3300031727 Ga0316576_10263217 Ga0316576_102632171 214
171 3300031733 Ga0316577_10061877 Ga0316577_100618773 214
172 3300032002 Ga0307416_100020857 Ga0307416_1000208576 214
173 3300032139 Ga0316580_10048892 Ga0316580_100488922 214
174 3300035398 Ga0316574_0097357 Ga0316574_0097357_605_1264 214
175 3300036712 Ga0316584_0001401 Ga0316584_0001401_12895_13554 214
176 3300037466 Ga0395898_0050381 Ga0395898_0050381_3044_3709 214
177 3300037466 Ga0395898_0686599 Ga0395898_0686599_168_833 214
178 3300038443 Ga0395901_0073125 Ga0395901_0073125_558_1223 214
179 3300041404 Ga0439436_0104368 Ga0439436_0104368_92_748 214
180 3300044765 Ga0466970_0015299 Ga0466970_0015299_2274_2939 214
181 3300044842 Ga0466957_0405652 Ga0466957_0405652_249_914 214
182 3300044901 Ga0466960_0000181 Ga0466960_0000181_8870_9547 214
183 3300044901 Ga0466960_0144700 Ga0466960_0144700_340_1014 214
184 3300044901 Ga0466960_0299664 Ga0466960_0299664_132_818 214
185 3300045976 Ga0466967_0107179 Ga0466967_0107179_965_1624 214
186 3300048915 Ga0496112_0009678 Ga0496112_0009678_6999_7664 214
187 3300048922 Ga0496119_0028917 Ga0496119_0028917_1549_2217 214
188 3300048924 Ga0496121_0052274 Ga0496121_0052274_500_1177 214
189 3300049571 Ga0501034_0040855 Ga0501034_0040855_651_1322 214
190 3300049574 Ga0501038_0627245 Ga0501038_0627245_52_714 214
191 3300049586 Ga0501070_0278303 Ga0501070_0278303_699_1355 214
192 3300053085 Ga0495619_0083525 Ga0495619_0083525_1025_1714 214
193 3300053153 Ga0500616_0003316 Ga0500616_0003316_11138_11803 214
194 3300005338 Ga0068868_100040151 Ga0068868_1000401514 215
195 3300006051 Ga0075364_10063632 Ga0075364_100636322 215
196 3300009979 Ga0105032_101579 Ga0105032_1015791 215
197 3300014969 Ga0157376_11280070 Ga0157376_112800701 215
198 3300025292 Ga0209676_1000436 Ga0209676_100043661 215
199 3300026023 Ga0207677_10221073 Ga0207677_102210731 215
200 3300046558 Ga0495633_0022672 Ga0495633_0022672_652_1326 215
201 3300047322 Ga0495680_0246718 Ga0495680_0246718_90_749 215
202 3300048915 Ga0496112_0210700 Ga0496112_0210700_977_1636 215
203 3300050491 nmdc:mga00v17_53310_c1 nmdc:mga00v17_53310_c1_405_1067 215
204 3300053161 Ga0500634_0004367 Ga0500634_0004367_1961_2635 215
205 3300028577 Ga0265318_10014863 Ga0265318_100148632 216
206 3300028800 Ga0265338_10121833 Ga0265338_101218333 216
207 3300048924 Ga0496121_0018762 Ga0496121_0018762_4138_4908 216
208 iso_pu_bacteria 2643221593 2643976309 217
209 iso_pu_bacteria 2941489479 2941490850 217
210 iso_pu_bacteria 2995948881 2995950270 217
211 3300046459 Ga0495629_0230508 Ga0495629_0230508_286_981 219
212 3300025304 Ga0209257_1001357 Ga0209257_100135725 220
213 3300031901 Ga0307406_10041033 Ga0307406_100410335 220
214 3300048926 Ga0496123_0024184 Ga0496123_0024184_1245_1919 220
215 3300048929 Ga0496126_0158740 Ga0496126_0158740_830_1504 220
216 3300003187 JGI25151J46595_10004924 JGI25151J46595_100049246 221
217 3300025245 Ga0207425_1009033 Ga0207425_10090332 221
218 3300025294 Ga0209025_1000006 Ga0209025_1000006128 221
219 3300025297 Ga0209758_1021248 Ga0209758_10212481 221

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01625

PMSR

Peptide methionine sulfoxide reductase

87

238

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6agv-assembly1.cif.gz_A crystal structure of apo mouse msra 0.9787 15 205
1fva-assembly2.cif.gz_B crystal structure of bovine methionine sulfoxide reductase 0.9782 18 217
6agv-assembly1.cif.gz_A crystal structure of apo mouse msra 0.9736 15 205
6yev-assembly4.cif.gz_D crystal structure of msra c206 and trx c35s complex from escherichia coli 0.9673 15 214
1fva-assembly2.cif.gz_B crystal structure of bovine methionine sulfoxide reductase 0.9638 18 217
ID Description Score Start End Superfamily
af_Q9SL43_48_247_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9712 50 202 3.30.1060.10
af_Q551H3_1_147_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9623 52 201 3.30.1060.10
1ff3B00 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9556 13 203 3.30.1060.10
af_P0A084_1_166_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9483 48 204 3.30.1060.10
af_Q551H3_1_147_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9367 52 201 3.30.1060.10
ID Description Score Start End GO Terms
AF-Q8PNY8-F1-model_v4 Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) 0.9942 8 220 GO:0005737
GO:0008113
GO:0034599
GO:0036211
GO:0036456
AF-A0A563Q366-F1-model_v4 Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) 0.9923 8 220 GO:0005737
GO:0008113
GO:0034599
GO:0036211
GO:0036456
AF-A0A2S7C5L3-F1-model_v4 Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) 0.992 8 220 GO:0005737
GO:0008113
GO:0034599
GO:0036211
GO:0036456
AF-A0A562M2F3-F1-model_v4 Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) 0.992 8 219 GO:0005737
GO:0008113
GO:0034599
GO:0036211
GO:0036456
AF-A0A7T8B6W7-F1-model_v4 deleted 0.9904 32 221

Feature Viewer

pLDDT pTM Quality
91.44 0.88 High
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Predicted Structure (AlphaFold2)

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