F329940

General Info

Members Datasets Scaffolds Average Seq Length
218 182 436 236

Family's Representative Sequence

Representative Sequence 3300013100|Ga0157373_10400891|Ga0157373_104008911
Length 262
Sequence MPNMVSGNTIAEVASLIGDAARANMLSALMGGQALTAGELARHAGVTAQTTSGHLGKLAQARLIEVEKQGRHRYYRLASPEVAHAIHALMAVAADGPKRHHPVGPKDEALRLARTCYDHMAGRLAIALADALTGSGYMLLGDGAGLITDEGRRFFCDFGIDLEQLTRSKRPLCRTCLDWSERRPHLAGQMGAALLDRALGVGWISRREETRALRITRAGEIGFAETFRLPSDWRIAPSETLMVRRLPGSSIPAAGTACRSQD

Samples

Sample ID Description Type Environment
1 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
10 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
11 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
12 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
15 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
18 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
19 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
20 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
21 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
24 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
27 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
38 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
39 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
40 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
41 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
46 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
47 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
57 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
58 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
64 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
65 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
66 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
67 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
69 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
72 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
90 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
91 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
94 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
95 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
96 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
97 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
98 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
99 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
100 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
103 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
104 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
105 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
106 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
107 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
108 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
109 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
110 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
111 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
112 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
113 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
114 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
115 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
116 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
117 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
118 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
119 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
120 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
121 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
122 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
123 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
124 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
125 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
126 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
127 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
128 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
129 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
137 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
138 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
139 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
140 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
141 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
142 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
143 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
146 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
147 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
148 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
149 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
150 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
151 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
152 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
153 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
154 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
155 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
156 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
157 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
158 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
159 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
160 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
161 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
162 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
163 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
164 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
165 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
166 2643221568 Rhizobium sp. Root564 Isolate Unclassified
167 2818991436 Collimonas arenae 515 Isolate Unclassified
168 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
169 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
170 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
171 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
172 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
173 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
174 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
175 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
176 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
177 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
178 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
179 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
180 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified
181 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
182 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.37
Metatranscriptomes 0.46
Isolates 9.17

Biome Distribution

Category Percentage (%)
Aerial Root 0.46
Bulb 0
Endosphere 21.56
Nodule 0.46
Rhizoplane 0.46
Rhizosphere 65.6
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157373_10400891 3300013100 Bacteria 983
2 JGI25162J39368_1000232 3300002737 Bacteria 56622
3 JGI25152J39213_1000170 3300002773 Bacteria 43894
4 JGI25150J39212_1000122 3300002774 Bacteria 43890
5 JGI25151J46595_10000411 3300003187 Bacteria 43894
6 JGI25165J46597_1000122 3300003214 Bacteria 132559
7 JGI25153J46596_10000252 3300003215 Bacteria 43894
8 rootL2_10225994 3300003322 Bacteria 6187
9 Ga0055538_1000048 3300003751 Bacteria 132559
10 Ga0055539_1000070 3300003752 Bacteria 132559
11 Ga0055533_1000078 3300003756 Bacteria 132559
12 Ga0055525_1000106 3300003759 Bacteria 132559
13 Ga0055530_10000045 3300003791 Bacteria 109202
14 Ga0055531_10001771 3300003794 Bacteria 15367
15 Ga0055541_1000050 3300003841 Bacteria 132559
16 Ga0065165_1000649 3300005262 Bacteria 50230
17 Ga0065165_1010668 3300005262 Bacteria 3937
18 Ga0070670_100219725 3300005331 Bacteria 1653
19 Ga0070689_100153791 3300005340 Bacteria 1856
20 Ga0070691_10320755 3300005341 Bacteria 852
21 Ga0070675_100032977 3300005354 Bacteria 4195
22 Ga0070674_100016881 3300005356 Bacteria 4581
23 Ga0070673_100364637 3300005364 Bacteria 1285
24 Ga0070688_100060094 3300005365 Bacteria 2399
25 Ga0070708_100400232 3300005445 Bacteria 1295
26 Ga0070708_100658553 3300005445 Bacteria 986
27 Ga0068867_100006161 3300005459 Bacteria 8491
28 Ga0070707_100494011 3300005468 Bacteria 1185
29 Ga0070699_100302640 3300005518 Bacteria 1435
30 Ga0068853_100402604 3300005539 Bacteria 1281
31 Ga0070672_100021636 3300005543 Bacteria 4710
32 Ga0068852_100631857 3300005616 Bacteria 1077
33 Ga0068861_100007693 3300005719 Bacteria 7399
34 Ga0068863_100267617 3300005841 Bacteria 1654
35 Ga0068858_100009419 3300005842 Bacteria 9318
36 Ga0068860_100004437 3300005843 Bacteria 14327
37 Ga0068860_100085550 3300005843 Bacteria 3001
38 Ga0068862_100135783 3300005844 Bacteria 2179
39 Ga0081455_10024168 3300005937 Bacteria 5636
40 Ga0075368_10021007 3300006042 Bacteria 2477
41 Ga0075363_100058959 3300006048 Bacteria 2063
42 Ga0075364_10019881 3300006051 Bacteria 4221
43 Ga0075367_10000593 3300006178 Bacteria 13910
44 Ga0075370_10133088 3300006353 Bacteria 1451
45 Ga0075428_100550452 3300006844 Bacteria 1233
46 Ga0075428_100829268 3300006844 Bacteria 982
47 Ga0075430_100439837 3300006846 Bacteria 1076
48 Ga0075430_100450211 3300006846 Bacteria 1062
49 Ga0075430_100618267 3300006846 Bacteria 894
50 Ga0075431_100233673 3300006847 Bacteria 1872
51 Ga0075434_100023876 3300006871 Bacteria 5967
52 Ga0075429_100109517 3300006880 Bacteria 2414
53 Ga0075429_100335427 3300006880 Bacteria 1323
54 Ga0075435_100013875 3300007076 Bacteria 6008
55 Ga0111539_10001387 3300009094 Bacteria 32219
56 Ga0111539_10239063 3300009094 Bacteria 2114
57 Ga0111539_10300845 3300009094 Bacteria 1867
58 Ga0114129_10079161 3300009147 Bacteria 4570
59 Ga0105243_10015320 3300009148 Bacteria 5799
60 Ga0105238_10008156 3300009551 Bacteria 10479
61 Ga0157371_10007941 3300013102 Bacteria 8515
62 Ga0157369_10098361 3300013105 Bacteria 3121
63 Ga0157378_10905786 3300013297 Bacteria 913
64 Ga0157379_10053733 3300014968 Bacteria 3599
65 Ga0157379_10106987 3300014968 Bacteria 2511
66 Ga0182007_10006143 3300015262 Bacteria 5187
67 Ga0182007_10020954 3300015262 Bacteria 2328
68 Ga0182005_1000696 3300015265 Bacteria 15660
69 Ga0209784_100062 3300025224 Bacteria 162240
70 Ga0209566_100023 3300025225 Bacteria 396571
71 Ga0209674_100040 3300025226 Bacteria 396571
72 Ga0209672_104364 3300025228 Bacteria 2638
73 Ga0209563_100096 3300025230 Bacteria 162240
74 Ga0207427_102049 3300025231 Bacteria 6039
75 Ga0209437_100146 3300025233 Bacteria 162240
76 Ga0207425_1000066 3300025245 Bacteria 125463
77 Ga0209026_1001112 3300025250 Bacteria 12770
78 Ga0209677_100058 3300025253 Bacteria 162240
79 Ga0209129_1000135 3300025258 Bacteria 125520
80 Ga0209233_1000159 3300025261 Bacteria 162240
81 Ga0209025_1000013 3300025294 Bacteria 871757
82 Ga0209758_1000014 3300025297 Bacteria 871757
83 Ga0209758_1001138 3300025297 Bacteria 34078
84 Ga0209050_1000121 3300025298 Bacteria 196019
85 Ga0209257_1000125 3300025304 Bacteria 218126
86 Ga0209257_1000706 3300025304 Bacteria 51722
87 Ga0207684_10166718 3300025910 Bacteria 1898
88 Ga0207662_10001570 3300025918 Bacteria 11179
89 Ga0207646_10046859 3300025922 Bacteria 3878
90 Ga0207646_10155391 3300025922 Bacteria 2063
91 Ga0207691_10036093 3300025940 Bacteria 4581
92 Ga0207689_10016755 3300025942 Bacteria 6202
93 Ga0207712_10028074 3300025961 Bacteria 3762
94 Ga0207668_10535592 3300025972 Bacteria 1012
95 Ga0207658_10020178 3300025986 Bacteria 4616
96 Ga0207703_10019906 3300026035 Bacteria 5245
97 Ga0207678_10010283 3300026067 Bacteria 8212
98 Ga0207708_10012185 3300026075 Bacteria 6415
99 Ga0207641_10254823 3300026088 Bacteria 1640
100 Ga0207648_10004403 3300026089 Bacteria 14466
101 Ga0207674_10075057 3300026116 Bacteria 3391
102 Ga0207675_100054110 3300026118 Bacteria 3744
103 Ga0209813_10102619 3300027866 Bacteria 975
104 Ga0207428_10000935 3300027907 Bacteria 32463
105 Ga0207428_10127715 3300027907 Bacteria 1947
106 Ga0268265_10077743 3300028380 Bacteria 2607
107 Ga0268265_10088731 3300028380 Bacteria 2464
108 Ga0268264_10078051 3300028381 Bacteria 2822
109 Ga0265760_10032652 3300031090 Bacteria 1537
110 Ga0265327_10001140 3300031251 Bacteria 36351
111 Ga0307513_10078276 3300031456 Bacteria 3420
112 Ga0307508_10000006 3300031616 Bacteria 275479
113 Ga0316583_10035896 3300032133 Bacteria 1760
114 Ga0373931_0153877 3300035691 Bacteria 1343
115 Ga0373931_0334684 3300035691 Bacteria 944
116 Ga0395900_0432877 3300037418 Bacteria 1274
117 Ga0395905_0304218 3300037471 Bacteria 1482
118 Ga0395905_0482052 3300037471 Bacteria 1140
119 Ga0395905_0558357 3300037471 Bacteria 1046
120 Ga0395901_0585282 3300038443 Bacteria 1127
121 Ga0439465_0184284 3300041413 Bacteria 756
122 Ga0466972_0050811 3300044658 Bacteria 2001
123 Ga0466960_0021138 3300044901 Bacteria 2894
124 Ga0466967_0043721 3300045976 Bacteria 3880
125 Ga0466967_0334581 3300045976 Bacteria 1463
126 Ga0495592_0062145 3300046454 Bacteria 2743
127 Ga0495651_0003256 3300046462 Bacteria 12459
128 Ga0495653_0083644 3300046463 Bacteria 2352
129 Ga0495653_0408892 3300046463 Bacteria 861
130 Ga0495618_0029563 3300046514 Bacteria 3419
131 Ga0495628_0000612 3300046516 Bacteria 32753
132 Ga0495628_0007680 3300046516 Bacteria 9324
133 Ga0495652_0002873 3300046529 Bacteria 17371
134 Ga0495652_0030200 3300046529 Bacteria 4755
135 Ga0495652_0079605 3300046529 Bacteria 2708
136 Ga0495645_0106060 3300046543 Bacteria 1993
137 Ga0495668_0043073 3300046616 Bacteria 2512
138 Ga0495635_0173497 3300046663 Bacteria 1466
139 Ga0495599_0015360 3300046678 Bacteria 4751
140 Ga0495623_0034649 3300046679 Bacteria 3237
141 Ga0495623_0105775 3300046679 Bacteria 1710
142 Ga0495646_0047665 3300046680 Bacteria 2607
143 Ga0495646_0078634 3300046680 Bacteria 1927
144 Ga0495624_0041914 3300046690 Bacteria 2926
145 Ga0495600_0006005 3300046809 Bacteria 7351
146 Ga0495604_0028233 3300047317 Bacteria 4463
147 Ga0495686_0002801 3300047472 Bacteria 15832
148 Ga0495602_0057790 3300048088 Bacteria 3400
149 Ga0496116_0000036 3300048919 Bacteria 388508
150 Ga0496117_0147965 3300048920 Bacteria 1395
151 Ga0496119_0054182 3300048922 Bacteria 2444
152 Ga0496120_0052975 3300048923 Bacteria 2307
153 Ga0496120_0092407 3300048923 Bacteria 1614
154 Ga0496122_0014206 3300048925 Bacteria 7716
155 Ga0496122_0021626 3300048925 Bacteria 5750
156 Ga0496122_0055423 3300048925 Bacteria 2966
157 Ga0496126_0000156 3300048929 Bacteria 158537
158 Ga0501033_0076261 3300049570 Bacteria 2461
159 Ga0501033_0076972 3300049570 Bacteria 2449
160 Ga0501033_0262021 3300049570 Bacteria 1223
161 Ga0501036_0009983 3300049572 Bacteria 7819
162 Ga0501037_0094566 3300049573 Bacteria 2161
163 Ga0501038_0229503 3300049574 Bacteria 1478
164 Ga0501038_0352119 3300049574 Bacteria 1147
165 Ga0501040_0073306 3300049576 Bacteria 2365
166 Ga0501040_0390989 3300049576 Bacteria 998
167 Ga0501042_0080448 3300049578 Bacteria 2334
168 Ga0501047_0062124 3300049581 Bacteria 3604
169 Ga0501071_0029419 3300049587 Bacteria 3877
170 Ga0501072_0466924 3300049588 Bacteria 999
171 Ga0501074_0031353 3300049590 Bacteria 3852
172 Ga0501075_0004899 3300049591 Bacteria 9126
173 Ga0501077_0041305 3300049593 Bacteria 2937
174 Ga0501238_018573 3300049671 Bacteria 974
175 Ga0501083_0155063 3300049744 Bacteria 1499
176 Ga0501035_0235867 3300049822 Bacteria 1558
177 Ga0501035_0610690 3300049822 Bacteria 888
178 Ga0501044_0008242 3300049823 Bacteria 11430
179 Ga0501045_0027348 3300049824 Bacteria 4109
180 nmdc:mga00v17_140548_c1 3300050491 Bacteria 1548
181 nmdc:mga0k408_62_c1 3300050493 Bacteria 48300
182 nmdc:mga06z11_259_c1 3300050494 Bacteria 20670
183 nmdc:mga07m45_26355_c1 3300050496 Bacteria 3195
184 nmdc:mga07m45_33003_c1 3300050496 Bacteria 2873
185 nmdc:mga05p37_544564_c1 3300050507 Bacteria 1323
186 nmdc:mga09592_408982_c1 3300050508 Bacteria 1173
187 nmdc:mga0qj67_65901_c1 3300050509 Bacteria 2884
188 nmdc:mga08y16_5946_c1 3300050511 Bacteria 12794
189 nmdc:mga0n895_52324_c1 3300050512 Bacteria 4008
190 nmdc:mga0rr50_13896_c1 3300050513 Bacteria 5261
191 Ga0495601_0379618 3300053077 Bacteria 917
192 Ga0500619_037952 3300053154 Bacteria 1507
193 Ga0500636_0000013 3300053177 Bacteria 130122
194 Ga0500636_0006840 3300053177 Bacteria 6570
195 Ga0500645_002121 3300053730 Bacteria 9148
196 Ga0501084_0077892 3300054114 Bacteria 2779
197 Ga0501082_0035323 3300060353 Bacteria 4308
198 Ga0530510_0135158 3300061734 Bacteria 1815
199 2511177617 2510917027 Bacteria 5287437
200 2512641365 2512564013 Bacteria 6286191
201 2600376516 2600254933 Bacteria 4750527
202 2643855870 2643221568 Bacteria 5187270
203 2819541499 2818991436 Bacteria 5376622
204 2837682038 2837678835 Bacteria 5252418
205 2884299815 2884298095 Bacteria 3823049
206 2894776479 2894772417 Bacteria 5305674
207 2897804253 2897803580 Bacteria 7000062
208 2902409707 2902405164 Bacteria 6784948
209 2915603412 2915597211 Bacteria 6475886
210 2915608273 2915606848 Bacteria 6032732
211 2919167364 2919166419 Bacteria 4952238
212 2929188521 2929183550 Bacteria 6377511
213 2929209467 2929206907 Bacteria 5918291
214 2978973795 2978969890 Bacteria 5400756
215 2984589144 2984587000 Bacteria 5263363
216 8045867548 8045864390 Bacteria 5043873
217 8054004503 8054002106 Bacteria 7987183
218 8054461897 8054460903 Bacteria 4872905
219 Ga0157373_10400891
220 JGI25162J39368_1000232
221 JGI25152J39213_1000170
222 JGI25150J39212_1000122
223 JGI25151J46595_10000411
224 JGI25165J46597_1000122
225 JGI25153J46596_10000252
226 rootL2_10225994
227 Ga0055538_1000048
228 Ga0055539_1000070
229 Ga0055533_1000078
230 Ga0055525_1000106
231 Ga0055530_10000045
232 Ga0055531_10001771
233 Ga0055541_1000050
234 Ga0065165_1000649
235 Ga0065165_1010668
236 Ga0070670_100219725
237 Ga0070689_100153791
238 Ga0070691_10320755
239 Ga0070675_100032977
240 Ga0070674_100016881
241 Ga0070673_100364637
242 Ga0070688_100060094
243 Ga0070708_100400232
244 Ga0070708_100658553
245 Ga0068867_100006161
246 Ga0070707_100494011
247 Ga0070699_100302640
248 Ga0068853_100402604
249 Ga0070672_100021636
250 Ga0068852_100631857
251 Ga0068861_100007693
252 Ga0068863_100267617
253 Ga0068858_100009419
254 Ga0068860_100004437
255 Ga0068860_100085550
256 Ga0068862_100135783
257 Ga0081455_10024168
258 Ga0075368_10021007
259 Ga0075363_100058959
260 Ga0075364_10019881
261 Ga0075367_10000593
262 Ga0075370_10133088
263 Ga0075428_100550452
264 Ga0075428_100829268
265 Ga0075430_100439837
266 Ga0075430_100450211
267 Ga0075430_100618267
268 Ga0075431_100233673
269 Ga0075434_100023876
270 Ga0075429_100109517
271 Ga0075429_100335427
272 Ga0075435_100013875
273 Ga0111539_10001387
274 Ga0111539_10239063
275 Ga0111539_10300845
276 Ga0114129_10079161
277 Ga0105243_10015320
278 Ga0105238_10008156
279 Ga0157371_10007941
280 Ga0157369_10098361
281 Ga0157378_10905786
282 Ga0157379_10053733
283 Ga0157379_10106987
284 Ga0182007_10006143
285 Ga0182007_10020954
286 Ga0182005_1000696
287 Ga0209784_100062
288 Ga0209566_100023
289 Ga0209674_100040
290 Ga0209672_104364
291 Ga0209563_100096
292 Ga0207427_102049
293 Ga0209437_100146
294 Ga0207425_1000066
295 Ga0209026_1001112
296 Ga0209677_100058
297 Ga0209129_1000135
298 Ga0209233_1000159
299 Ga0209025_1000013
300 Ga0209758_1000014
301 Ga0209758_1001138
302 Ga0209050_1000121
303 Ga0209257_1000125
304 Ga0209257_1000706
305 Ga0207684_10166718
306 Ga0207662_10001570
307 Ga0207646_10046859
308 Ga0207646_10155391
309 Ga0207691_10036093
310 Ga0207689_10016755
311 Ga0207712_10028074
312 Ga0207668_10535592
313 Ga0207658_10020178
314 Ga0207703_10019906
315 Ga0207678_10010283
316 Ga0207708_10012185
317 Ga0207641_10254823
318 Ga0207648_10004403
319 Ga0207674_10075057
320 Ga0207675_100054110
321 Ga0209813_10102619
322 Ga0207428_10000935
323 Ga0207428_10127715
324 Ga0268265_10077743
325 Ga0268265_10088731
326 Ga0268264_10078051
327 Ga0265760_10032652
328 Ga0265327_10001140
329 Ga0307513_10078276
330 Ga0307508_10000006
331 Ga0316583_10035896
332 Ga0373931_0153877
333 Ga0373931_0334684
334 Ga0395900_0432877
335 Ga0395905_0304218
336 Ga0395905_0482052
337 Ga0395905_0558357
338 Ga0395901_0585282
339 Ga0439465_0184284
340 Ga0466972_0050811
341 Ga0466960_0021138
342 Ga0466967_0043721
343 Ga0466967_0334581
344 Ga0495592_0062145
345 Ga0495651_0003256
346 Ga0495653_0083644
347 Ga0495653_0408892
348 Ga0495618_0029563
349 Ga0495628_0000612
350 Ga0495628_0007680
351 Ga0495652_0002873
352 Ga0495652_0030200
353 Ga0495652_0079605
354 Ga0495645_0106060
355 Ga0495668_0043073
356 Ga0495635_0173497
357 Ga0495599_0015360
358 Ga0495623_0034649
359 Ga0495623_0105775
360 Ga0495646_0047665
361 Ga0495646_0078634
362 Ga0495624_0041914
363 Ga0495600_0006005
364 Ga0495604_0028233
365 Ga0495686_0002801
366 Ga0495602_0057790
367 Ga0496116_0000036
368 Ga0496117_0147965
369 Ga0496119_0054182
370 Ga0496120_0052975
371 Ga0496120_0092407
372 Ga0496122_0014206
373 Ga0496122_0021626
374 Ga0496122_0055423
375 Ga0496126_0000156
376 Ga0501033_0076261
377 Ga0501033_0076972
378 Ga0501033_0262021
379 Ga0501036_0009983
380 Ga0501037_0094566
381 Ga0501038_0229503
382 Ga0501038_0352119
383 Ga0501040_0073306
384 Ga0501040_0390989
385 Ga0501042_0080448
386 Ga0501047_0062124
387 Ga0501071_0029419
388 Ga0501072_0466924
389 Ga0501074_0031353
390 Ga0501075_0004899
391 Ga0501077_0041305
392 Ga0501238_018573
393 Ga0501083_0155063
394 Ga0501035_0235867
395 Ga0501035_0610690
396 Ga0501044_0008242
397 Ga0501045_0027348
398 nmdc:mga00v17_140548_c1
399 nmdc:mga0k408_62_c1
400 nmdc:mga06z11_259_c1
401 nmdc:mga07m45_26355_c1
402 nmdc:mga07m45_33003_c1
403 nmdc:mga05p37_544564_c1
404 nmdc:mga09592_408982_c1
405 nmdc:mga0qj67_65901_c1
406 nmdc:mga08y16_5946_c1
407 nmdc:mga0n895_52324_c1
408 nmdc:mga0rr50_13896_c1
409 Ga0495601_0379618
410 Ga0500619_037952
411 Ga0500636_0000013
412 Ga0500636_0006840
413 Ga0500645_002121
414 Ga0501084_0077892
415 Ga0501082_0035323
416 Ga0530510_0135158
417 2511177617
418 2512641365
419 2600376516
420 2643855870
421 2819541499
422 2837682038
423 2884299815
424 2894776479
425 2897804253
426 2902409707
427 2915603412
428 2915608273
429 2919167364
430 2929188521
431 2929209467
432 2978973795
433 2984589144
434 8045867548
435 8054004503
436 8054461897

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12840

HTH_20

Helix-turn-helix domain

17

67

0.96

PF01022

HTH_5

Bacterial regulatory protein, arsR family

19

66

0.93

PF12802

MarR_2

MarR family

19

73

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1u2w-assembly2.cif.gz_C crystal structure of the staphylococcus aureus pi258 cadc 0.9621 7 88
1u2w-assembly1.cif.gz_B crystal structure of the staphylococcus aureus pi258 cadc 0.9613 7 88
1r22-assembly1.cif.gz_B crystal structure of the cyanobacterial metallothionein repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-form 0.9496 7 87
3f72-assembly1.cif.gz_B crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9461 7 88
3f72-assembly3.cif.gz_E crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9437 7 88
ID Description Score Start End Superfamily
1u2wC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9621 7 88 1.10.10.10
1r22B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9496 7 87 1.10.10.10
af_Q57824_147_206_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9479 18 73 1.10.10.10
3f72B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9461 7 88 1.10.10.10
af_O53921_2_101_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9391 7 88 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A656KWB5-F1-model_v4 deleted 0.983 14 87
AF-A0A326UP39-F1-model_v4 DNA-binding transcriptional ArsR family regulator 0.9764 7 88 GO:0003677
GO:0003700
AF-A0A7C3K5G7-F1-model_v4 Transcriptional regulator 0.9747 7 88 GO:0003700
GO:0046686
AF-A0A385EKR9-F1-model_v4 Cadmium resistance transcriptional regulatory protein CadC 0.9736 12 88 GO:0003677
GO:0003700
GO:0046686
AF-A0A1S2LP80-F1-model_v4 Transcriptional regulator 0.9725 7 88 GO:0003677
GO:0003700
GO:0046686

Map