F327572

General Info

Members Datasets Scaffolds Average Seq Length
216 123 432 112

Family's Representative Sequence

Representative Sequence 3300010375|Ga0105239_10546211|Ga0105239_105462113
Length 127
Sequence LFTFKPREARVPVPLYQAKAEFLRTLGHPARIRILELLSERDHAVHELLERIAIEPSNLSQQLAVLRRTALVVSRRQDGEVLYSLSVPEVRDLLLAARRIITNRAQAVDFESELTPVDQTAAESTAR

Samples

Sample ID Description Type Environment
1 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
27 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
37 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
38 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
39 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
52 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
53 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
54 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
55 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
56 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
57 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
62 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
63 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
64 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
65 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
68 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
69 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
70 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
71 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
72 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
73 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
74 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
75 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
76 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
79 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
93 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
94 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
95 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
96 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
97 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
98 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
99 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
100 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
101 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
102 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
105 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
106 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
107 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
108 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
109 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
110 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
111 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
112 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
113 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
114 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
115 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
116 2643221576 Nocardioides sp. Root614 Isolate Unclassified
117 2643221590 Nocardioides sp. Root682 Isolate Unclassified
118 2738541305 Nocardioides sp. CF167 Isolate Unclassified
119 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
120 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
121 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
122 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
123 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.37
Metatranscriptomes 0.93
Isolates 3.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.11
Nodule 0
Rhizoplane 14.35
Rhizosphere 70.37
Stem 0
Stem Tuber 0
Unclassified 2.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105239_10546211 3300010375 Bacteria 1319
2 Ga0006562J51391_1048941 3300003578 Bacteria 2450
3 Ga0070658_10164577 3300005327 Bacteria 1862
4 Ga0070683_100281205 3300005329 Bacteria 1583
5 Ga0070660_100309532 3300005339 Bacteria 1296
6 Ga0070661_100207707 3300005344 Bacteria 1498
7 Ga0070708_100570487 3300005445 Bacteria 1067
8 Ga0070663_100046270 3300005455 Bacteria 3078
9 Ga0070663_101867751 3300005455 Bacteria 539
10 Ga0070678_101485221 3300005456 Bacteria 634
11 Ga0070698_100080024 3300005471 Bacteria 3263
12 Ga0070684_101680832 3300005535 Bacteria 599
13 Ga0070665_100001051 3300005548 Bacteria 34592
14 Ga0070664_100039186 3300005564 Bacteria 3992
15 Ga0070664_100161960 3300005564 Bacteria 1980
16 Ga0070664_101949319 3300005564 Unclassified 557
17 Ga0068857_101624913 3300005577 Unclassified 631
18 Ga0068856_100293133 3300005614 Bacteria 1644
19 Ga0068861_102112772 3300005719 Bacteria 563
20 Ga0081455_10779430 3300005937 Bacteria 602
21 Ga0075365_10028698 3300006038 Bacteria 3550
22 Ga0075365_10354356 3300006038 Bacteria 1034
23 Ga0075363_100038254 3300006048 Bacteria 2523
24 Ga0075364_10068527 3300006051 Bacteria 2333
25 Ga0075364_10286461 3300006051 Bacteria 1121
26 Ga0075367_10008900 3300006178 Bacteria 5224
27 Ga0075369_10095111 3300006186 Bacteria 1332
28 Ga0075370_10286611 3300006353 Bacteria 978
29 Ga0105244_10259880 3300009036 Bacteria 808
30 Ga0114129_11522382 3300009147 Unclassified 821
31 Ga0105243_12493887 3300009148 Bacteria 556
32 Ga0105241_10963062 3300009174 Bacteria 796
33 Ga0105248_11590069 3300009177 Bacteria 740
34 Ga0105237_10269619 3300009545 Bacteria 1705
35 Ga0105238_10414306 3300009551 Bacteria 1341
36 Ga0105239_10016754 3300010375 Bacteria 8101
37 Ga0105246_10121836 3300011119 Bacteria 1934
38 Ga0105246_10348515 3300011119 Bacteria 1213
39 Ga0163162_10472647 3300013306 Bacteria 1385
40 Ga0163162_12696423 3300013306 Unclassified 572
41 Ga0157375_11901114 3300013308 Bacteria 706
42 Ga0157375_12294601 3300013308 Bacteria 643
43 Ga0163163_10297698 3300014325 Bacteria 1666
44 Ga0163163_10596988 3300014325 Bacteria 1167
45 Ga0157380_10504431 3300014326 Bacteria 1176
46 Ga0182008_10256081 3300014497 Bacteria 904
47 Ga0163161_11407774 3300017792 Bacteria 609
48 Ga0154015_1178175 3300020610 Bacteria 1294
49 Ga0207688_10893269 3300025901 Unclassified 563
50 Ga0207671_10237102 3300025914 Bacteria 1432
51 Ga0207657_10205211 3300025919 Bacteria 1583
52 Ga0207649_10464889 3300025920 Bacteria 957
53 Ga0207706_10326832 3300025933 Bacteria 1334
54 Ga0207661_10247725 3300025944 Bacteria 1583
55 Ga0207661_10279753 3300025944 Bacteria 1491
56 Ga0207679_10249679 3300025945 Bacteria 1508
57 Ga0207679_10275102 3300025945 Bacteria 1442
58 Ga0207679_10366786 3300025945 Bacteria 1259
59 Ga0207678_10017453 3300026067 Bacteria 6305
60 Ga0207676_11373427 3300026095 Bacteria 702
61 Ga0207674_11317517 3300026116 Unclassified 691
62 Ga0268266_10002603 3300028379 Bacteria 19110
63 Ga0265320_10291029 3300031240 Bacteria 723
64 Ga0265314_10182889 3300031711 Bacteria 1254
65 Ga0307412_10715942 3300031911 Bacteria 861
66 Ga0307409_100155264 3300031995 Bacteria 1993
67 Ga0307409_100281227 3300031995 Bacteria 1538
68 Ga0307409_100366986 3300031995 Bacteria 1364
69 Ga0307416_102365779 3300032002 Bacteria 631
70 Ga0307414_10899825 3300032004 Bacteria 811
71 Ga0316583_10238443 3300032133 Bacteria 630
72 Ga0316574_0037712 3300035398 Bacteria 2965
73 Ga0316574_0177943 3300035398 Bacteria 1369
74 Ga0395900_0153276 3300037418 Bacteria 2354
75 Ga0395898_0106559 3300037466 Bacteria 2688
76 Ga0395898_0736666 3300037466 Bacteria 927
77 Ga0395901_0010731 3300038443 Bacteria 9287
78 Ga0395901_0014455 3300038443 Bacteria 8031
79 Ga0395901_1089458 3300038443 Bacteria 770
80 Ga0395901_1226492 3300038443 Bacteria 715
81 Ga0439448_0131701 3300042005 Bacteria 862
82 Ga0439463_136686 3300042016 Bacteria 635
83 Ga0439464_0051553 3300042439 Bacteria 1191
84 Ga0453684_0257693 3300044712 Bacteria 2000
85 Ga0466960_0692741 3300044901 Bacteria 611
86 Ga0466967_0782646 3300045976 Bacteria 947
87 Ga0466967_2539019 3300045976 Bacteria 507
88 Ga0495639_0265846 3300046475 Bacteria 850
89 Ga0495658_0208686 3300046683 Bacteria 1220
90 Ga0496100_0075041 3300048903 Bacteria 2267
91 Ga0496104_0023428 3300048907 Bacteria 5676
92 Ga0496104_0058449 3300048907 Bacteria 3650
93 Ga0496104_0207615 3300048907 Bacteria 1870
94 Ga0496104_0533103 3300048907 Bacteria 1085
95 Ga0496105_0159655 3300048908 Bacteria 1851
96 Ga0496107_0134044 3300048910 Bacteria 1830
97 Ga0496108_0037679 3300048911 Bacteria 4029
98 Ga0496108_0076533 3300048911 Bacteria 2829
99 Ga0496109_0028194 3300048912 Bacteria 5021
100 Ga0496109_0078892 3300048912 Bacteria 3032
101 Ga0496109_0114990 3300048912 Bacteria 2503
102 Ga0496109_0232639 3300048912 Bacteria 1734
103 Ga0496110_0156074 3300048913 Bacteria 2067
104 Ga0496110_0157651 3300048913 Bacteria 2057
105 Ga0496110_0164672 3300048913 Bacteria 2010
106 Ga0496110_0379313 3300048913 Bacteria 1288
107 Ga0496110_0477032 3300048913 Bacteria 1136
108 Ga0496111_0024000 3300048914 Bacteria 4288
109 Ga0496111_0078082 3300048914 Bacteria 2414
110 Ga0496111_0157863 3300048914 Bacteria 1683
111 Ga0496111_0557859 3300048914 Bacteria 841
112 Ga0496111_0713256 3300048914 Bacteria 729
113 Ga0496113_0049619 3300048916 Bacteria 3126
114 Ga0496113_0114280 3300048916 Bacteria 2105
115 Ga0496113_0351078 3300048916 Bacteria 1183
116 Ga0496114_0099019 3300048917 Bacteria 2486
117 Ga0496114_0321223 3300048917 Bacteria 1368
118 Ga0496114_0412750 3300048917 Bacteria 1196
119 Ga0496114_0854510 3300048917 Bacteria 790
120 Ga0496114_0862891 3300048917 Bacteria 786
121 Ga0501031_0292266 3300049568 Bacteria 1056
122 Ga0501031_0499490 3300049568 Bacteria 785
123 Ga0501032_0169229 3300049569 Bacteria 1433
124 Ga0501032_0346147 3300049569 Bacteria 958
125 Ga0501034_0043998 3300049571 Bacteria 4516
126 Ga0501034_0583121 3300049571 Bacteria 1025
127 Ga0501036_0162329 3300049572 Bacteria 1884
128 Ga0501036_0391027 3300049572 Bacteria 1160
129 Ga0501036_1037798 3300049572 Bacteria 670
130 Ga0501038_0108143 3300049574 Bacteria 2306
131 Ga0501038_0471551 3300049574 Bacteria 963
132 Ga0501039_0067267 3300049575 Bacteria 2782
133 Ga0501039_0151581 3300049575 Bacteria 1821
134 Ga0501039_0332916 3300049575 Bacteria 1193
135 Ga0501039_0396496 3300049575 Bacteria 1084
136 Ga0501039_0412832 3300049575 Bacteria 1060
137 Ga0501040_0006967 3300049576 Bacteria 7321
138 Ga0501040_0198056 3300049576 Bacteria 1426
139 Ga0501041_0129902 3300049577 Bacteria 1569
140 Ga0501041_0176137 3300049577 Bacteria 1339
141 Ga0501042_0032560 3300049578 Bacteria 3692
142 Ga0501042_0240396 3300049578 Bacteria 1307
143 Ga0501042_0530340 3300049578 Bacteria 855
144 Ga0501043_0329881 3300049579 Bacteria 1162
145 Ga0501046_0217876 3300049580 Bacteria 1415
146 Ga0501047_0367407 3300049581 Bacteria 1274
147 Ga0501048_0010611 3300049582 Bacteria 6874
148 Ga0501048_0863395 3300049582 Bacteria 651
149 Ga0501068_0157438 3300049584 Bacteria 1431
150 Ga0501069_0193464 3300049585 Bacteria 1177
151 Ga0501070_0047250 3300049586 Bacteria 3578
152 Ga0501070_0051529 3300049586 Bacteria 3416
153 Ga0501070_0187017 3300049586 Bacteria 1703
154 Ga0501070_1124806 3300049586 Bacteria 605
155 Ga0501071_0011144 3300049587 Bacteria 6045
156 Ga0501071_0202584 3300049587 Bacteria 1491
157 Ga0501071_0397081 3300049587 Bacteria 1053
158 Ga0501071_0651487 3300049587 Bacteria 810
159 Ga0501071_1125023 3300049587 Bacteria 607
160 Ga0501072_0096363 3300049588 Bacteria 2351
161 Ga0501072_0420043 3300049588 Bacteria 1060
162 Ga0501073_0047366 3300049589 Bacteria 3021
163 Ga0501073_0755013 3300049589 Bacteria 671
164 Ga0501073_0984165 3300049589 Bacteria 580
165 Ga0501074_0031308 3300049590 Bacteria 3854
166 Ga0501074_0098705 3300049590 Bacteria 2090
167 Ga0501074_0446077 3300049590 Bacteria 918
168 Ga0501075_0287529 3300049591 Bacteria 1253
169 Ga0501075_0291811 3300049591 Bacteria 1242
170 Ga0501076_0003422 3300049592 Bacteria 11131
171 Ga0501076_0766849 3300049592 Bacteria 796
172 Ga0501077_0088392 3300049593 Bacteria 1964
173 Ga0501077_1062829 3300049593 Bacteria 521
174 Ga0501079_0021190 3300049741 Bacteria 4970
175 Ga0501079_0142321 3300049741 Bacteria 1868
176 Ga0501079_0212093 3300049741 Bacteria 1513
177 Ga0501079_0381547 3300049741 Bacteria 1105
178 Ga0501080_0194701 3300049742 Bacteria 1862
179 Ga0501080_1293097 3300049742 Bacteria 625
180 Ga0501080_1720086 3300049742 Bacteria 529
181 Ga0501081_0036889 3300049743 Bacteria 3334
182 Ga0501081_0151151 3300049743 Bacteria 1668
183 Ga0501081_0545891 3300049743 Bacteria 866
184 Ga0501045_0008898 3300049824 Bacteria 7009
185 Ga0501045_0243759 3300049824 Bacteria 1338
186 Ga0501045_0887140 3300049824 Bacteria 655
187 nmdc:mga03n38_105209_c1 3300050490 Bacteria 1366
188 nmdc:mga03n38_382454_c1 3300050490 Bacteria 772
189 nmdc:mga00v17_133728_c1 3300050491 Bacteria 1586
190 nmdc:mga00v17_176748_c1 3300050491 Bacteria 1377
191 nmdc:mga00v17_324883_c1 3300050491 Bacteria 1000
192 nmdc:mga00v17_48690_c1 3300050491 Bacteria 2569
193 nmdc:mga00v17_75393_c1 3300050491 Bacteria 2097
194 nmdc:mga0yw44_274897_c1 3300050492 Bacteria 1125
195 nmdc:mga0yw44_600319_c1 3300050492 Bacteria 748
196 nmdc:mga06z11_298190_c1 3300050494 Bacteria 958
197 nmdc:mga06z11_63668_c1 3300050494 Bacteria 1930
198 nmdc:mga06z11_692672_c1 3300050494 Bacteria 621
199 nmdc:mga07m45_33213_c1 3300050496 Bacteria 2865
200 nmdc:mga07m45_53989_c1 3300050496 Bacteria 2271
201 nmdc:mga0sz30_49402_c1 3300050516 Bacteria 1782
202 Ga0500604_0332990 3300053151 Bacteria 527
203 Ga0501084_0108916 3300054114 Bacteria 2327
204 Ga0501084_0229423 3300054114 Bacteria 1567
205 Ga0501084_1674518 3300054114 Bacteria 532
206 Ga0501082_0080992 3300060353 Bacteria 2802
207 Ga0530510_0177828 3300061734 Bacteria 1577
208 Ga0530510_0461708 3300061734 Bacteria 961
209 2643890186 2643221576 Bacteria 5214352
210 2643959242 2643221590 Bacteria 5214697
211 2738868983 2738541305 Bacteria 4910150
212 2809197501 2808606439 Bacteria 5952208
213 2812330796 2811994874 Bacteria 5367947
214 2812351000 2811994878 Bacteria 5992952
215 2819427004 2818991318 Bacteria 5266538
216 2891968964 2891968417 Bacteria 5821697
217 Ga0105239_10546211
218 Ga0006562J51391_1048941
219 Ga0070658_10164577
220 Ga0070683_100281205
221 Ga0070660_100309532
222 Ga0070661_100207707
223 Ga0070708_100570487
224 Ga0070663_100046270
225 Ga0070663_101867751
226 Ga0070678_101485221
227 Ga0070698_100080024
228 Ga0070684_101680832
229 Ga0070665_100001051
230 Ga0070664_100039186
231 Ga0070664_100161960
232 Ga0070664_101949319
233 Ga0068857_101624913
234 Ga0068856_100293133
235 Ga0068861_102112772
236 Ga0081455_10779430
237 Ga0075365_10028698
238 Ga0075365_10354356
239 Ga0075363_100038254
240 Ga0075364_10068527
241 Ga0075364_10286461
242 Ga0075367_10008900
243 Ga0075369_10095111
244 Ga0075370_10286611
245 Ga0105244_10259880
246 Ga0114129_11522382
247 Ga0105243_12493887
248 Ga0105241_10963062
249 Ga0105248_11590069
250 Ga0105237_10269619
251 Ga0105238_10414306
252 Ga0105239_10016754
253 Ga0105246_10121836
254 Ga0105246_10348515
255 Ga0163162_10472647
256 Ga0163162_12696423
257 Ga0157375_11901114
258 Ga0157375_12294601
259 Ga0163163_10297698
260 Ga0163163_10596988
261 Ga0157380_10504431
262 Ga0182008_10256081
263 Ga0163161_11407774
264 Ga0154015_1178175
265 Ga0207688_10893269
266 Ga0207671_10237102
267 Ga0207657_10205211
268 Ga0207649_10464889
269 Ga0207706_10326832
270 Ga0207661_10247725
271 Ga0207661_10279753
272 Ga0207679_10249679
273 Ga0207679_10275102
274 Ga0207679_10366786
275 Ga0207678_10017453
276 Ga0207676_11373427
277 Ga0207674_11317517
278 Ga0268266_10002603
279 Ga0265320_10291029
280 Ga0265314_10182889
281 Ga0307412_10715942
282 Ga0307409_100155264
283 Ga0307409_100281227
284 Ga0307409_100366986
285 Ga0307416_102365779
286 Ga0307414_10899825
287 Ga0316583_10238443
288 Ga0316574_0037712
289 Ga0316574_0177943
290 Ga0395900_0153276
291 Ga0395898_0106559
292 Ga0395898_0736666
293 Ga0395901_0010731
294 Ga0395901_0014455
295 Ga0395901_1089458
296 Ga0395901_1226492
297 Ga0439448_0131701
298 Ga0439463_136686
299 Ga0439464_0051553
300 Ga0453684_0257693
301 Ga0466960_0692741
302 Ga0466967_0782646
303 Ga0466967_2539019
304 Ga0495639_0265846
305 Ga0495658_0208686
306 Ga0496100_0075041
307 Ga0496104_0023428
308 Ga0496104_0058449
309 Ga0496104_0207615
310 Ga0496104_0533103
311 Ga0496105_0159655
312 Ga0496107_0134044
313 Ga0496108_0037679
314 Ga0496108_0076533
315 Ga0496109_0028194
316 Ga0496109_0078892
317 Ga0496109_0114990
318 Ga0496109_0232639
319 Ga0496110_0156074
320 Ga0496110_0157651
321 Ga0496110_0164672
322 Ga0496110_0379313
323 Ga0496110_0477032
324 Ga0496111_0024000
325 Ga0496111_0078082
326 Ga0496111_0157863
327 Ga0496111_0557859
328 Ga0496111_0713256
329 Ga0496113_0049619
330 Ga0496113_0114280
331 Ga0496113_0351078
332 Ga0496114_0099019
333 Ga0496114_0321223
334 Ga0496114_0412750
335 Ga0496114_0854510
336 Ga0496114_0862891
337 Ga0501031_0292266
338 Ga0501031_0499490
339 Ga0501032_0169229
340 Ga0501032_0346147
341 Ga0501034_0043998
342 Ga0501034_0583121
343 Ga0501036_0162329
344 Ga0501036_0391027
345 Ga0501036_1037798
346 Ga0501038_0108143
347 Ga0501038_0471551
348 Ga0501039_0067267
349 Ga0501039_0151581
350 Ga0501039_0332916
351 Ga0501039_0396496
352 Ga0501039_0412832
353 Ga0501040_0006967
354 Ga0501040_0198056
355 Ga0501041_0129902
356 Ga0501041_0176137
357 Ga0501042_0032560
358 Ga0501042_0240396
359 Ga0501042_0530340
360 Ga0501043_0329881
361 Ga0501046_0217876
362 Ga0501047_0367407
363 Ga0501048_0010611
364 Ga0501048_0863395
365 Ga0501068_0157438
366 Ga0501069_0193464
367 Ga0501070_0047250
368 Ga0501070_0051529
369 Ga0501070_0187017
370 Ga0501070_1124806
371 Ga0501071_0011144
372 Ga0501071_0202584
373 Ga0501071_0397081
374 Ga0501071_0651487
375 Ga0501071_1125023
376 Ga0501072_0096363
377 Ga0501072_0420043
378 Ga0501073_0047366
379 Ga0501073_0755013
380 Ga0501073_0984165
381 Ga0501074_0031308
382 Ga0501074_0098705
383 Ga0501074_0446077
384 Ga0501075_0287529
385 Ga0501075_0291811
386 Ga0501076_0003422
387 Ga0501076_0766849
388 Ga0501077_0088392
389 Ga0501077_1062829
390 Ga0501079_0021190
391 Ga0501079_0142321
392 Ga0501079_0212093
393 Ga0501079_0381547
394 Ga0501080_0194701
395 Ga0501080_1293097
396 Ga0501080_1720086
397 Ga0501081_0036889
398 Ga0501081_0151151
399 Ga0501081_0545891
400 Ga0501045_0008898
401 Ga0501045_0243759
402 Ga0501045_0887140
403 nmdc:mga03n38_105209_c1
404 nmdc:mga03n38_382454_c1
405 nmdc:mga00v17_133728_c1
406 nmdc:mga00v17_176748_c1
407 nmdc:mga00v17_324883_c1
408 nmdc:mga00v17_48690_c1
409 nmdc:mga00v17_75393_c1
410 nmdc:mga0yw44_274897_c1
411 nmdc:mga0yw44_600319_c1
412 nmdc:mga06z11_298190_c1
413 nmdc:mga06z11_63668_c1
414 nmdc:mga06z11_692672_c1
415 nmdc:mga07m45_33213_c1
416 nmdc:mga07m45_53989_c1
417 nmdc:mga0sz30_49402_c1
418 Ga0500604_0332990
419 Ga0501084_0108916
420 Ga0501084_0229423
421 Ga0501084_1674518
422 Ga0501082_0080992
423 Ga0530510_0177828
424 Ga0530510_0461708
425 2643890186
426 2643959242
427 2738868983
428 2809197501
429 2812330796
430 2812351000
431 2819427004
432 2891968964

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12840

HTH_20

Helix-turn-helix domain

26

75

0.96

PF01022

HTH_5

Bacterial regulatory protein, arsR family

28

74

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6o8m-assembly1.cif.gz_A crystal structure of c9s apo sulfide-responsive transcriptional repressor (sqrr) from rhodobacter capsulated bound to diamide (tetramethylazodicarboxamide). 0.9351 6 92
3pqj-assembly2.cif.gz_C crystal structure of the transcriptional repressor bigr from xylella fastidiosa 0.9204 6 90
6o8o-assembly1.cif.gz_B crystal structure of c9s disulfide state of sulfide-responsive transcriptional repressor (sqrr) from rhodobacter capsulatus. 0.9166 6 89
5j6x-assembly2.cif.gz_B crystal structure of the apo-zalpha of zebrafish pkz 0.9131 21 77
4ooi-assembly1.cif.gz_B reduced hlyu from vibrio cholerae n16961 0.9128 6 90
ID Description Score Start End Superfamily
af_Q58793_322_389_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.964 16 76 1.10.10.10
af_Q86JM3_2_62_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9592 20 74 1.10.10.10
af_Q8IL78_1923_2032_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.951 47 75 1.10.10.10
af_Q58793_245_317_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9498 14 76 1.10.10.10
af_Q9VD25_2_64_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.945 20 75 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A3C0WX27-F1-model_v4 Transcriptional regulator 0.9646 5 92 GO:0003700
AF-A0A5D8Q7U1-F1-model_v4 Winged helix-turn-helix transcriptional regulator 0.9631 10 93 GO:0003700
AF-A0A4Q7IWC2-F1-model_v4 Transcriptional regulator 0.9623 5 93 GO:0003677
GO:0003700
AF-A0A524JYB6-F1-model_v4 ArsR family transcriptional regulator 0.9622 10 90 GO:0003700
AF-A0A0S6UC97-F1-model_v4 Predicted transcriptional regulators 0.9614 10 94 GO:0003700
GO:0046686

Map