F325920
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 215 | 153 | 202 | 502 |
Family's Representative Sequence
| Representative Sequence | 3300002459|JGI24751J29686_10003571|JGI24751J29686_100035711 |
| Length | 537 |
| Sequence | MAAPESDIARLGDTPGFPATVTETGMIPVGSAISPLPGPATLRARRIGLHSQREPIVELRSDSAICRSEGLVPHSRVEVQAGSRSVIATLFQIDGNALGCDEIGLSESAWHLLGICHDEPVRVRHAPPIASLASIRRRIYGHRLDLHDMTAIVGDVVAGRYADLHLAAFLTATAASPLDEDESWALTKAMIASGERLEWPSSIVVDKHCVGGLPGNRTTPIVVAIVTACGLTMPKTSSRAITSPAGTADVMATLAPVDLSIEQMRRVVDKVGGCIAWGGAIDLSPADDIFIGVERALDIDTEGQLVASVLSKKIAAGATHVVLDIPVGPTAKIRSVAAADDLARRLASIAERFGVSAICVQSDGNQPVGRALGPALEAADVVAVLSEAHDAPFDLRARACSLAAILLEAGGAALPGDGRRLAEQTLATGAAGRQFDRICEAQGGRRVLPTCRHRHVVTADRSGVITAIDNRKIARLAKLAGAPDVPAAGLVLAVRVGTAVHRGDPLFTLHADSPGELAYALEYARANLDILAFGDVK |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2513020051 | Variovorax sp. CF313 | Isolate | Rhizosphere |
| 2 | 2524023207 | Ensifer sp. USDA 6670 | Isolate | Nodule |
| 3 | 2593339238 | Luteibacter sp. UNCMF366Tsu5.1 | Isolate | Unclassified |
| 4 | 2643221556 | Massilia sp. Root1485 | Isolate | Unclassified |
| 5 | 2643221579 | Pseudoxanthomonas sp. Root630 | Isolate | Unclassified |
| 6 | 2643221638 | Duganella sp. Root336D2 | Isolate | Unclassified |
| 7 | 2643221684 | Massilia sp. Root133 | Isolate | Unclassified |
| 8 | 2855020534 | Paracoccus endophyticus SYSUP0003 | Isolate | Stem Tuber |
| 9 | 2858950400 | Achromobacter sp. K91 | Isolate | Unclassified |
| 10 | 2884960567 | Caulobacter sp. 602-1 | Isolate | Rhizosphere |
| 11 | 2889790730 | Chelativorans xinjiangense lm93 | Isolate | Rhizosphere |
| 12 | 2889914905 | Chelativorans alearense UJN715 | Isolate | Rhizosphere |
| 13 | 2928963466 | Dyella japonica 1073 | Isolate | Unclassified |
| 14 | 3300002459 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 | Metagenome | Rhizosphere |
| 15 | 3300002773 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS | Metagenome | Endosphere |
| 16 | 3300002774 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA | Metagenome | Endosphere |
| 17 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 18 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 19 | 3300003374 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF | Metagenome | Endosphere |
| 20 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 21 | 3300003773 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 | Metagenome | Endosphere |
| 22 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 23 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 24 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 25 | 3300004625 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 | Metagenome | Endosphere |
| 26 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 27 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 29 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 30 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 31 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 33 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 35 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 36 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 37 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 38 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 39 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 40 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 41 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 42 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 43 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 44 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 45 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 46 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 47 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 48 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 49 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 51 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 52 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 54 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 55 | 3300025208 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 56 | 3300025225 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 57 | 3300025231 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 58 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 59 | 3300025245 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) | Metagenome | Endosphere |
| 60 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 61 | 3300025258 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) | Metagenome | Endosphere |
| 62 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 63 | 3300025263 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 64 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 65 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 66 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 67 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 68 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 69 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 70 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 71 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 72 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 91 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 92 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 93 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 94 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 95 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 96 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 97 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 98 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 99 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 100 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 101 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 102 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 103 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 104 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 105 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 106 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 107 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 108 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 109 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 110 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 111 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 112 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 113 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 114 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046499 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046514 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300046535 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300046542 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300046557 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300046680 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 130 | 3300047673 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 132 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 133 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 134 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 135 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 136 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 137 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 138 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 139 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 140 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 141 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 142 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 143 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 144 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 145 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 146 | 3300053119 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere | Metagenome | Endosphere |
| 147 | 3300053122 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere | Metagenome | Endosphere |
| 148 | 3300053729 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere | Metagenome | Endosphere |
| 149 | 3300053735 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere | Metagenome | Endosphere |
| 150 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 151 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 152 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 153 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 93.95 |
| Metatranscriptomes | 0 |
| Isolates | 6.05 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 23.72 |
| Nodule | 0.47 |
| Rhizoplane | 0 |
| Rhizosphere | 70.7 |
| Stem | 0 |
| Stem Tuber | 0.47 |
| Unclassified | 4.65 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24751J29686_10003571 | 3300002459 | Bacteria | 3135 |
| 2 | JGI25152J39213_1000202 | 3300002773 | Bacteria | 39928 |
| 3 | JGI25150J39212_1000146 | 3300002774 | Bacteria | 39961 |
| 4 | JGI25153J46596_10002308 | 3300003215 | Bacteria | 11091 |
| 5 | rootL2_10048291 | 3300003322 | Bacteria | 9407 |
| 6 | JGI25161J50226_1000241 | 3300003374 | Bacteria | 32954 |
| 7 | Ga0055526_1000210 | 3300003771 | Bacteria | 50339 |
| 8 | Ga0055537_1003566 | 3300003773 | Bacteria | 4755 |
| 9 | Ga0055524_1000372 | 3300003775 | Bacteria | 39278 |
| 10 | Ga0055524_1000805 | 3300003775 | Bacteria | 20811 |
| 11 | Ga0055530_10000612 | 3300003791 | Bacteria | 31015 |
| 12 | Ga0055530_10001250 | 3300003791 | Bacteria | 19378 |
| 13 | Ga0055530_10001620 | 3300003791 | Bacteria | 16139 |
| 14 | Ga0055531_10001414 | 3300003794 | Bacteria | 17732 |
| 15 | Ga0055531_10014551 | 3300003794 | Bacteria | 3534 |
| 16 | Ga0055543_1000136 | 3300004625 | Bacteria | 60943 |
| 17 | Ga0065165_1000543 | 3300005262 | Bacteria | 57024 |
| 18 | Ga0070658_10040030 | 3300005327 | Bacteria | 3781 |
| 19 | Ga0070683_100052350 | 3300005329 | Bacteria | 3782 |
| 20 | Ga0070670_100000339 | 3300005331 | Bacteria | 39253 |
| 21 | Ga0070670_100002660 | 3300005331 | Bacteria | 14770 |
| 22 | Ga0070670_100225526 | 3300005331 | Bacteria | 1630 |
| 23 | Ga0070680_100001712 | 3300005336 | Bacteria | 16112 |
| 24 | Ga0070680_100016332 | 3300005336 | Bacteria | 5842 |
| 25 | Ga0070668_100002607 | 3300005347 | Bacteria | 13254 |
| 26 | Ga0070671_100000027 | 3300005355 | Bacteria | 114189 |
| 27 | Ga0070659_100186584 | 3300005366 | Bacteria | 1703 |
| 28 | Ga0070667_100000004 | 3300005367 | Bacteria | 444091 |
| 29 | Ga0070714_100088625 | 3300005435 | Bacteria | 2708 |
| 30 | Ga0070663_100000221 | 3300005455 | Bacteria | 28844 |
| 31 | Ga0070679_100035404 | 3300005530 | Bacteria | 4953 |
| 32 | Ga0070679_100039511 | 3300005530 | Bacteria | 4689 |
| 33 | Ga0070665_100000447 | 3300005548 | Bacteria | 60073 |
| 34 | Ga0070664_100007032 | 3300005564 | Bacteria | 9083 |
| 35 | Ga0070664_100032392 | 3300005564 | Bacteria | 4371 |
| 36 | Ga0068857_100000663 | 3300005577 | Bacteria | 25449 |
| 37 | Ga0068856_100062061 | 3300005614 | Bacteria | 3692 |
| 38 | Ga0068864_100000379 | 3300005618 | Bacteria | 38803 |
| 39 | Ga0068863_100007183 | 3300005841 | Bacteria | 10931 |
| 40 | Ga0068860_100000002 | 3300005843 | Bacteria | 627849 |
| 41 | Ga0068862_100002573 | 3300005844 | Bacteria | 16022 |
| 42 | Ga0068862_100128471 | 3300005844 | Unclassified | 2240 |
| 43 | Ga0075428_100161739 | 3300006844 | Bacteria | 2430 |
| 44 | Ga0075431_100105933 | 3300006847 | Bacteria | 2901 |
| 45 | Ga0075434_100040559 | 3300006871 | Bacteria | 4610 |
| 46 | Ga0111539_10266815 | 3300009094 | Bacteria | 1993 |
| 47 | Ga0105248_10164299 | 3300009177 | Bacteria | 2503 |
| 48 | Ga0105238_10007743 | 3300009551 | Bacteria | 10743 |
| 49 | Ga0105238_10065878 | 3300009551 | Bacteria | 3623 |
| 50 | Ga0157371_10122457 | 3300013102 | Bacteria | 1850 |
| 51 | Ga0157375_10058160 | 3300013308 | Bacteria | 3824 |
| 52 | Ga0157375_10115043 | 3300013308 | Bacteria | 2793 |
| 53 | Ga0157375_10124696 | 3300013308 | Bacteria | 2689 |
| 54 | Ga0157379_10113602 | 3300014968 | Bacteria | 2434 |
| 55 | Ga0209436_100134 | 3300025208 | Bacteria | 36882 |
| 56 | Ga0209436_100462 | 3300025208 | Bacteria | 18058 |
| 57 | Ga0209566_101634 | 3300025225 | Bacteria | 5789 |
| 58 | Ga0207427_103745 | 3300025231 | Bacteria | 2970 |
| 59 | Ga0209437_100445 | 3300025233 | Bacteria | 34443 |
| 60 | Ga0209437_102496 | 3300025233 | Bacteria | 3543 |
| 61 | Ga0207425_1000001 | 3300025245 | Bacteria | 2525432 |
| 62 | Ga0207425_1000115 | 3300025245 | Bacteria | 76109 |
| 63 | Ga0207425_1000233 | 3300025245 | Bacteria | 43097 |
| 64 | Ga0209646_1000054 | 3300025246 | Bacteria | 279447 |
| 65 | Ga0209646_1004533 | 3300025246 | Bacteria | 2518 |
| 66 | Ga0209129_1000001 | 3300025258 | Bacteria | 1452436 |
| 67 | Ga0209233_1000013 | 3300025261 | Bacteria | 1013785 |
| 68 | Ga0209565_1000812 | 3300025263 | Bacteria | 17836 |
| 69 | Ga0209565_1001722 | 3300025263 | Bacteria | 8955 |
| 70 | Ga0209565_1002299 | 3300025263 | Bacteria | 7019 |
| 71 | Ga0209130_1000357 | 3300025284 | Bacteria | 52253 |
| 72 | Ga0209130_1000506 | 3300025284 | Bacteria | 39620 |
| 73 | Ga0209675_1000281 | 3300025291 | Bacteria | 48631 |
| 74 | Ga0209675_1001426 | 3300025291 | Bacteria | 13811 |
| 75 | Ga0209564_1000406 | 3300025295 | Bacteria | 76777 |
| 76 | Ga0209564_1001997 | 3300025295 | Bacteria | 17836 |
| 77 | Ga0209564_1003785 | 3300025295 | Bacteria | 9839 |
| 78 | Ga0209758_1000020 | 3300025297 | Bacteria | 734220 |
| 79 | Ga0209050_1000074 | 3300025298 | Bacteria | 289334 |
| 80 | Ga0209050_1000540 | 3300025298 | Bacteria | 62691 |
| 81 | Ga0209050_1001668 | 3300025298 | Bacteria | 22432 |
| 82 | Ga0209256_1000028 | 3300025299 | Bacteria | 420213 |
| 83 | Ga0209256_1001464 | 3300025299 | Bacteria | 24230 |
| 84 | Ga0209256_1004390 | 3300025299 | Bacteria | 8903 |
| 85 | Ga0207426_1001733 | 3300025302 | Bacteria | 16639 |
| 86 | Ga0209257_1000813 | 3300025304 | Bacteria | 45304 |
| 87 | Ga0209257_1004558 | 3300025304 | Bacteria | 10610 |
| 88 | Ga0207705_10039691 | 3300025909 | Bacteria | 3374 |
| 89 | Ga0207660_10002744 | 3300025917 | Bacteria | 11533 |
| 90 | Ga0207660_10031017 | 3300025917 | Bacteria | 3678 |
| 91 | Ga0207652_10001224 | 3300025921 | Bacteria | 22993 |
| 92 | Ga0207681_10006088 | 3300025923 | Bacteria | 7401 |
| 93 | Ga0207694_10066228 | 3300025924 | Bacteria | 2818 |
| 94 | Ga0207650_10000008 | 3300025925 | Bacteria | 498534 |
| 95 | Ga0207650_10002924 | 3300025925 | Bacteria | 11785 |
| 96 | Ga0207650_10089002 | 3300025925 | Bacteria | 2355 |
| 97 | Ga0207644_10000064 | 3300025931 | Bacteria | 77442 |
| 98 | Ga0207690_10129693 | 3300025932 | Bacteria | 1844 |
| 99 | Ga0207670_10043688 | 3300025936 | Bacteria | 2961 |
| 100 | Ga0207668_10000024 | 3300025972 | Bacteria | 131871 |
| 101 | Ga0207658_10000002 | 3300025986 | Bacteria | 1364188 |
| 102 | Ga0207678_10000548 | 3300026067 | Bacteria | 34383 |
| 103 | Ga0207641_10000475 | 3300026088 | Bacteria | 45483 |
| 104 | Ga0207648_10131218 | 3300026089 | Bacteria | 2205 |
| 105 | Ga0207676_10000264 | 3300026095 | Bacteria | 45636 |
| 106 | Ga0207674_10002442 | 3300026116 | Bacteria | 23469 |
| 107 | Ga0268265_10000204 | 3300028380 | Bacteria | 68890 |
| 108 | Ga0268264_10000001 | 3300028381 | Bacteria | 1221000 |
| 109 | Ga0265331_10000407 | 3300031250 | Bacteria | 44156 |
| 110 | Ga0307408_100000155 | 3300031548 | Bacteria | 76665 |
| 111 | Ga0307408_100004075 | 3300031548 | Bacteria | 9968 |
| 112 | Ga0307408_100015702 | 3300031548 | Bacteria | 5045 |
| 113 | Ga0307408_100038574 | 3300031548 | Bacteria | 3372 |
| 114 | Ga0307405_10018498 | 3300031731 | Bacteria | 3845 |
| 115 | Ga0307405_10044571 | 3300031731 | Bacteria | 2713 |
| 116 | Ga0307413_10005659 | 3300031824 | Bacteria | 5607 |
| 117 | Ga0307413_10012766 | 3300031824 | Bacteria | 4193 |
| 118 | Ga0307413_10026381 | 3300031824 | Bacteria | 3200 |
| 119 | Ga0307410_10000738 | 3300031852 | Bacteria | 13702 |
| 120 | Ga0307410_10006147 | 3300031852 | Bacteria | 6445 |
| 121 | Ga0307407_10003983 | 3300031903 | Bacteria | 6174 |
| 122 | Ga0307407_10026023 | 3300031903 | Bacteria | 3093 |
| 123 | Ga0307409_100008279 | 3300031995 | Bacteria | 6300 |
| 124 | Ga0307409_100009192 | 3300031995 | Bacteria | 6058 |
| 125 | Ga0307416_100037752 | 3300032002 | Bacteria | 3720 |
| 126 | Ga0307416_100122629 | 3300032002 | Bacteria | 2320 |
| 127 | Ga0307414_10007943 | 3300032004 | Bacteria | 5991 |
| 128 | Ga0307411_10001241 | 3300032005 | Bacteria | 10157 |
| 129 | Ga0307411_10011210 | 3300032005 | Bacteria | 4823 |
| 130 | Ga0307415_100053778 | 3300032126 | Bacteria | 2745 |
| 131 | Ga0373927_0036227 | 3300035695 | Bacteria | 3209 |
| 132 | Ga0373927_0097172 | 3300035695 | Bacteria | 1914 |
| 133 | Ga0373937_0000705 | 3300036401 | Bacteria | 29113 |
| 134 | Ga0395899_0000104 | 3300037312 | Bacteria | 147238 |
| 135 | Ga0395899_0000997 | 3300037312 | Bacteria | 25998 |
| 136 | Ga0395900_0000942 | 3300037418 | Bacteria | 37967 |
| 137 | Ga0395900_0001462 | 3300037418 | Bacteria | 28184 |
| 138 | Ga0395900_0008559 | 3300037418 | Bacteria | 10521 |
| 139 | Ga0395900_0029082 | 3300037418 | Bacteria | 5668 |
| 140 | Ga0395898_0000169 | 3300037466 | Bacteria | 168667 |
| 141 | Ga0395898_0001808 | 3300037466 | Bacteria | 27684 |
| 142 | Ga0395898_0003763 | 3300037466 | Bacteria | 16803 |
| 143 | Ga0395905_0000109 | 3300037471 | Bacteria | 137754 |
| 144 | Ga0395905_0000150 | 3300037471 | Bacteria | 115552 |
| 145 | Ga0395905_0001465 | 3300037471 | Bacteria | 28296 |
| 146 | Ga0395905_0056945 | 3300037471 | Bacteria | 3656 |
| 147 | Ga0395901_0001213 | 3300038443 | Bacteria | 27430 |
| 148 | Ga0395901_0040079 | 3300038443 | Plasmid | 4850 |
| 149 | Ga0395901_0303980 | 3300038443 | Unclassified | 1653 |
| 150 | Ga0451577_0001480 | 3300042876 | Bacteria | 31106 |
| 151 | Ga0466966_0008324 | 3300044684 | Bacteria | 6873 |
| 152 | Ga0466961_0041930 | 3300044693 | Unclassified | 2934 |
| 153 | Ga0466959_0042667 | 3300045049 | Unclassified | 3345 |
| 154 | Ga0451576_0093094 | 3300045051 | Bacteria | 3134 |
| 155 | Ga0466958_0011577 | 3300045836 | Bacteria | 4971 |
| 156 | Ga0495603_0010666 | 3300046455 | Bacteria | 5571 |
| 157 | Ga0495629_0041495 | 3300046459 | Bacteria | 3238 |
| 158 | Ga0495638_0003510 | 3300046460 | Bacteria | 12305 |
| 159 | Ga0495650_0000317 | 3300046471 | Bacteria | 86483 |
| 160 | Ga0495580_0005212 | 3300046472 | Bacteria | 10796 |
| 161 | Ga0495580_0022944 | 3300046472 | Bacteria | 4588 |
| 162 | Ga0495594_0004948 | 3300046499 | Bacteria | 6853 |
| 163 | Ga0495606_0000066 | 3300046507 | Bacteria | 181028 |
| 164 | Ga0495618_0044464 | 3300046514 | Bacteria | 2802 |
| 165 | Ga0495630_0051031 | 3300046517 | Bacteria | 3095 |
| 166 | Ga0495630_0070131 | 3300046517 | Bacteria | 2637 |
| 167 | Ga0495586_0011832 | 3300046535 | Bacteria | 4637 |
| 168 | Ga0495597_0007539 | 3300046542 | Bacteria | 5517 |
| 169 | Ga0495622_0001518 | 3300046557 | Bacteria | 11593 |
| 170 | Ga0495622_0020576 | 3300046557 | Unclassified | 3073 |
| 171 | Ga0495668_0035492 | 3300046616 | Bacteria | 2795 |
| 172 | Ga0495646_0113575 | 3300046680 | Bacteria | 1540 |
| 173 | Ga0495658_0017265 | 3300046683 | Bacteria | 3726 |
| 174 | Ga0495581_0028978 | 3300047315 | Bacteria | 3210 |
| 175 | Ga0495593_0024371 | 3300047673 | Bacteria | 3354 |
| 176 | Ga0501033_0030682 | 3300049570 | Bacteria | 4039 |
| 177 | Ga0501033_0068576 | 3300049570 | Bacteria | 2607 |
| 178 | Ga0501034_0001831 | 3300049571 | Bacteria | 26995 |
| 179 | Ga0501034_0149460 | 3300049571 | Unclassified | 2312 |
| 180 | Ga0501039_0034324 | 3300049575 | Bacteria | 3915 |
| 181 | Ga0501042_0096699 | 3300049578 | Bacteria | 2122 |
| 182 | Ga0501043_0016084 | 3300049579 | Bacteria | 5868 |
| 183 | Ga0501043_0036134 | 3300049579 | Bacteria | 3886 |
| 184 | Ga0501047_0002069 | 3300049581 | Bacteria | 19195 |
| 185 | Ga0501068_0045955 | 3300049584 | Bacteria | 2632 |
| 186 | Ga0501075_0252365 | 3300049591 | Bacteria | 1345 |
| 187 | Ga0501076_0009582 | 3300049592 | Bacteria | 7151 |
| 188 | Ga0501081_0047703 | 3300049743 | Bacteria | 2947 |
| 189 | Ga0501035_0004589 | 3300049822 | Bacteria | 13099 |
| 190 | Ga0501035_0004978 | 3300049822 | Bacteria | 12595 |
| 191 | Ga0501045_0010184 | 3300049824 | Bacteria | 6581 |
| 192 | nmdc:mga06r32_92784_c1 | 3300050510 | Bacteria | 2952 |
| 193 | nmdc:mga0n895_38628_c1 | 3300050512 | Bacteria | 4626 |
| 194 | Ga0500651_0042650 | 3300053093 | Bacteria | 2859 |
| 195 | Ga0500595_010303 | 3300053119 | Bacteria | 3721 |
| 196 | Ga0500608_000500 | 3300053122 | Bacteria | 14661 |
| 197 | Ga0500625_026698 | 3300053729 | Bacteria | 2736 |
| 198 | Ga0500596_002655 | 3300053735 | Bacteria | 3507 |
| 199 | Ga0501084_0169854 | 3300054114 | Bacteria | 1841 |
| 200 | Ga0501082_0036128 | 3300060353 | Bacteria | 4257 |
| 201 | Ga0466962_0052128 | 3300061719 | Unclassified | 1956 |
| 202 | Ga0530510_0125020 | 3300061734 | Bacteria | 1890 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300005336 | Ga0070680_100001712 | Ga0070680_1000017129 | 431 |
| 2 | 3300025917 | Ga0207660_10002744 | Ga0207660_100027445 | 431 |
| 3 | 3300046680 | Ga0495646_0113575 | Ga0495646_0113575_231_1529 | 432 |
| 4 | 3300049591 | Ga0501075_0252365 | Ga0501075_0252365_18_1316 | 432 |
| 5 | 3300037471 | Ga0395905_0056945 | Ga0395905_0056945_1239_2579 | 446 |
| 6 | 3300025921 | Ga0207652_10001224 | Ga0207652_100012241 | 447 |
| 7 | 3300037418 | Ga0395900_0008559 | Ga0395900_0008559_5131_6477 | 448 |
| 8 | 3300037418 | Ga0395900_0029082 | Ga0395900_0029082_1356_2705 | 448 |
| 9 | 3300037466 | Ga0395898_0003763 | Ga0395898_0003763_6358_7704 | 448 |
| 10 | 3300038443 | Ga0395901_0040079 | Ga0395901_0040079_543_1892 | 448 |
| 11 | 3300037312 | Ga0395899_0000104 | Ga0395899_0000104_19910_21283 | 457 |
| 12 | 3300037418 | Ga0395900_0000942 | Ga0395900_0000942_27157_28530 | 457 |
| 13 | 3300037466 | Ga0395898_0000169 | Ga0395898_0000169_32846_34219 | 457 |
| 14 | 3300037471 | Ga0395905_0000109 | Ga0395905_0000109_83829_85202 | 457 |
| 15 | 3300038443 | Ga0395901_0303980 | Ga0395901_0303980_211_1584 | 457 |
| 16 | 3300025246 | Ga0209646_1004533 | Ga0209646_10045332 | 468 |
| 17 | iso_pu_bacteria | 2855020534 | 2855022133 | 473 |
| 18 | 3300031548 | Ga0307408_100038574 | Ga0307408_1000385743 | 476 |
| 19 | 3300005336 | Ga0070680_100016332 | Ga0070680_1000163322 | 477 |
| 20 | 3300005455 | Ga0070663_100000221 | Ga0070663_10000022129 | 477 |
| 21 | 3300025917 | Ga0207660_10031017 | Ga0207660_100310175 | 477 |
| 22 | 3300026067 | Ga0207678_10000548 | Ga0207678_1000054828 | 477 |
| 23 | 3300044684 | Ga0466966_0008324 | Ga0466966_0008324_1033_2466 | 477 |
| 24 | 3300044693 | Ga0466961_0041930 | Ga0466961_0041930_773_2206 | 477 |
| 25 | 3300045049 | Ga0466959_0042667 | Ga0466959_0042667_1403_2836 | 477 |
| 26 | 3300045836 | Ga0466958_0011577 | Ga0466958_0011577_3272_4705 | 477 |
| 27 | 3300061719 | Ga0466962_0052128 | Ga0466962_0052128_77_1510 | 477 |
| 28 | 3300045051 | Ga0451576_0093094 | Ga0451576_0093094_1153_2706 | 483 |
| 29 | 3300013308 | Ga0157375_10124696 | Ga0157375_101246962 | 484 |
| 30 | 3300014968 | Ga0157379_10113602 | Ga0157379_101136022 | 484 |
| 31 | 3300025925 | Ga0207650_10089002 | Ga0207650_100890021 | 484 |
| 32 | 3300049570 | Ga0501033_0068576 | Ga0501033_0068576_495_1982 | 487 |
| 33 | 3300037471 | Ga0395905_0000150 | Ga0395905_0000150_48471_49943 | 489 |
| 34 | 3300025936 | Ga0207670_10043688 | Ga0207670_100436883 | 490 |
| 35 | 3300005844 | Ga0068862_100128471 | Ga0068862_1001284712 | 491 |
| 36 | 3300005329 | Ga0070683_100052350 | Ga0070683_1000523503 | 493 |
| 37 | 3300005435 | Ga0070714_100088625 | Ga0070714_1000886252 | 493 |
| 38 | 3300005564 | Ga0070664_100032392 | Ga0070664_1000323924 | 493 |
| 39 | 3300046499 | Ga0495594_0004948 | Ga0495594_0004948_2045_3568 | 493 |
| 40 | iso_pu_bacteria | 2593339238 | 2595446084 | 494 |
| 41 | iso_pu_bacteria | 2643221638 | 2644211749 | 495 |
| 42 | 3300025231 | Ga0207427_103745 | Ga0207427_1037452 | 496 |
| 43 | 3300025233 | Ga0209437_100445 | Ga0209437_10044515 | 496 |
| 44 | 3300031824 | Ga0307413_10012766 | Ga0307413_100127665 | 496 |
| 45 | 3300031852 | Ga0307410_10000738 | Ga0307410_100007385 | 496 |
| 46 | 3300031903 | Ga0307407_10026023 | Ga0307407_100260232 | 496 |
| 47 | 3300031995 | Ga0307409_100009192 | Ga0307409_1000091922 | 496 |
| 48 | 3300032004 | Ga0307414_10007943 | Ga0307414_100079432 | 496 |
| 49 | 3300032005 | Ga0307411_10011210 | Ga0307411_100112106 | 496 |
| 50 | 3300025233 | Ga0209437_102496 | Ga0209437_1024962 | 497 |
| 51 | iso_pu_bacteria | 2513020051 | 2513226453 | 497 |
| 52 | 3300002773 | JGI25152J39213_1000202 | JGI25152J39213_100020224 | 498 |
| 53 | 3300002774 | JGI25150J39212_1000146 | JGI25150J39212_100014614 | 498 |
| 54 | 3300003215 | JGI25153J46596_10002308 | JGI25153J46596_100023083 | 498 |
| 55 | 3300003775 | Ga0055524_1000372 | Ga0055524_100037241 | 498 |
| 56 | 3300013102 | Ga0157371_10122457 | Ga0157371_101224571 | 498 |
| 57 | 3300025245 | Ga0207425_1000001 | Ga0207425_10000011092 | 498 |
| 58 | 3300025258 | Ga0209129_1000001 | Ga0209129_1000001269 | 498 |
| 59 | 3300025297 | Ga0209758_1000020 | Ga0209758_1000020184 | 498 |
| 60 | 3300025299 | Ga0209256_1000028 | Ga0209256_1000028157 | 498 |
| 61 | 3300003374 | JGI25161J50226_1000241 | JGI25161J50226_100024127 | 499 |
| 62 | 3300003771 | Ga0055526_1000210 | Ga0055526_100021029 | 499 |
| 63 | 3300003773 | Ga0055537_1003566 | Ga0055537_10035664 | 499 |
| 64 | 3300003775 | Ga0055524_1000805 | Ga0055524_10008052 | 499 |
| 65 | 3300003791 | Ga0055530_10000612 | Ga0055530_1000061227 | 499 |
| 66 | 3300003791 | Ga0055530_10001250 | Ga0055530_100012506 | 499 |
| 67 | 3300003791 | Ga0055530_10001620 | Ga0055530_100016204 | 499 |
| 68 | 3300003794 | Ga0055531_10001414 | Ga0055531_100014147 | 499 |
| 69 | 3300003794 | Ga0055531_10014551 | Ga0055531_100145513 | 499 |
| 70 | 3300004625 | Ga0055543_1000136 | Ga0055543_100013620 | 499 |
| 71 | 3300005262 | Ga0065165_1000543 | Ga0065165_100054327 | 499 |
| 72 | 3300025208 | Ga0209436_100134 | Ga0209436_10013426 | 499 |
| 73 | 3300025208 | Ga0209436_100462 | Ga0209436_10046211 | 499 |
| 74 | 3300025245 | Ga0207425_1000115 | Ga0207425_100011536 | 499 |
| 75 | 3300025245 | Ga0207425_1000233 | Ga0207425_100023319 | 499 |
| 76 | 3300025263 | Ga0209565_1000812 | Ga0209565_100081210 | 499 |
| 77 | 3300025263 | Ga0209565_1001722 | Ga0209565_10017226 | 499 |
| 78 | 3300025263 | Ga0209565_1002299 | Ga0209565_10022997 | 499 |
| 79 | 3300025284 | Ga0209130_1000357 | Ga0209130_100035722 | 499 |
| 80 | 3300025284 | Ga0209130_1000506 | Ga0209130_10005067 | 499 |
| 81 | 3300025291 | Ga0209675_1000281 | Ga0209675_100028117 | 499 |
| 82 | 3300025291 | Ga0209675_1001426 | Ga0209675_100142611 | 499 |
| 83 | 3300025295 | Ga0209564_1000406 | Ga0209564_100040651 | 499 |
| 84 | 3300025295 | Ga0209564_1001997 | Ga0209564_100199710 | 499 |
| 85 | 3300025295 | Ga0209564_1003785 | Ga0209564_10037855 | 499 |
| 86 | 3300025298 | Ga0209050_1000074 | Ga0209050_1000074226 | 499 |
| 87 | 3300025298 | Ga0209050_1000540 | Ga0209050_100054025 | 499 |
| 88 | 3300025298 | Ga0209050_1001668 | Ga0209050_100166811 | 499 |
| 89 | 3300025299 | Ga0209256_1001464 | Ga0209256_100146420 | 499 |
| 90 | 3300025299 | Ga0209256_1004390 | Ga0209256_10043909 | 499 |
| 91 | 3300025302 | Ga0207426_1001733 | Ga0207426_100173310 | 499 |
| 92 | 3300025304 | Ga0209257_1000813 | Ga0209257_100081319 | 499 |
| 93 | 3300025304 | Ga0209257_1004558 | Ga0209257_10045584 | 499 |
| 94 | 3300031548 | Ga0307408_100000155 | Ga0307408_10000015542 | 499 |
| 95 | 3300031548 | Ga0307408_100004075 | Ga0307408_1000040757 | 499 |
| 96 | 3300031824 | Ga0307413_10026381 | Ga0307413_100263811 | 499 |
| 97 | 3300046455 | Ga0495603_0010666 | Ga0495603_0010666_399_1898 | 499 |
| 98 | 3300005614 | Ga0068856_100062061 | Ga0068856_1000620612 | 500 |
| 99 | 3300005530 | Ga0070679_100035404 | Ga0070679_1000354042 | 501 |
| 100 | 3300005548 | Ga0070665_100000447 | Ga0070665_10000044748 | 501 |
| 101 | 3300009551 | Ga0105238_10065878 | Ga0105238_100658782 | 501 |
| 102 | 3300025909 | Ga0207705_10039691 | Ga0207705_100396913 | 501 |
| 103 | 3300025924 | Ga0207694_10066228 | Ga0207694_100662283 | 501 |
| 104 | iso_pu_bacteria | 2858950400 | 2858952626 | 501 |
| 105 | 3300005366 | Ga0070659_100186584 | Ga0070659_1001865841 | 502 |
| 106 | 3300025261 | Ga0209233_1000013 | Ga0209233_1000013495 | 502 |
| 107 | 3300031250 | Ga0265331_10000407 | Ga0265331_1000040725 | 502 |
| 108 | 3300049570 | Ga0501033_0030682 | Ga0501033_0030682_367_1875 | 502 |
| 109 | 3300049571 | Ga0501034_0149460 | Ga0501034_0149460_96_1604 | 502 |
| 110 | 3300049822 | Ga0501035_0004978 | Ga0501035_0004978_5041_6552 | 502 |
| 111 | iso_pu_bacteria | 2884960567 | 2884964043 | 502 |
| 112 | iso_pu_bacteria | 2889914905 | 2889917838 | 502 |
| 113 | 3300005327 | Ga0070658_10040030 | Ga0070658_100400304 | 503 |
| 114 | 3300005530 | Ga0070679_100039511 | Ga0070679_1000395112 | 503 |
| 115 | iso_pu_bacteria | 2889790730 | 2889792816 | 503 |
| 116 | 3300006844 | Ga0075428_100161739 | Ga0075428_1001617392 | 504 |
| 117 | 3300009094 | Ga0111539_10266815 | Ga0111539_102668152 | 504 |
| 118 | 3300025932 | Ga0207690_10129693 | Ga0207690_101296932 | 504 |
| 119 | 3300031731 | Ga0307405_10018498 | Ga0307405_100184982 | 504 |
| 120 | 3300032126 | Ga0307415_100053778 | Ga0307415_1000537782 | 504 |
| 121 | 3300042876 | Ga0451577_0001480 | Ga0451577_0001480_26926_28440 | 504 |
| 122 | 3300046542 | Ga0495597_0007539 | Ga0495597_0007539_2065_3669 | 504 |
| 123 | 3300046557 | Ga0495622_0001518 | Ga0495622_0001518_3345_4949 | 504 |
| 124 | 3300046616 | Ga0495668_0035492 | Ga0495668_0035492_624_2228 | 504 |
| 125 | 3300047673 | Ga0495593_0024371 | Ga0495593_0024371_718_2322 | 504 |
| 126 | 3300053093 | Ga0500651_0042650 | Ga0500651_0042650_744_2348 | 504 |
| 127 | 3300053119 | Ga0500595_010303 | Ga0500595_010303_1243_2847 | 504 |
| 128 | 3300053122 | Ga0500608_000500 | Ga0500608_000500_1735_3339 | 504 |
| 129 | 3300053729 | Ga0500625_026698 | Ga0500625_026698_431_2035 | 504 |
| 130 | 3300053735 | Ga0500596_002655 | Ga0500596_002655_1627_3231 | 504 |
| 131 | iso_pu_bacteria | 2643221579 | 2643906125 | 504 |
| 132 | 3300005331 | Ga0070670_100225526 | Ga0070670_1002255261 | 505 |
| 133 | 3300009551 | Ga0105238_10007743 | Ga0105238_1000774311 | 505 |
| 134 | 3300013308 | Ga0157375_10115043 | Ga0157375_101150432 | 505 |
| 135 | 3300049579 | Ga0501043_0016084 | Ga0501043_0016084_3019_4551 | 505 |
| 136 | 3300049822 | Ga0501035_0004589 | Ga0501035_0004589_10823_12349 | 505 |
| 137 | 3300054114 | Ga0501084_0169854 | Ga0501084_0169854_246_1781 | 505 |
| 138 | 3300061734 | Ga0530510_0125020 | Ga0530510_0125020_273_1808 | 505 |
| 139 | iso_pu_bacteria | 2643221556 | 2643799933 | 505 |
| 140 | iso_pu_bacteria | 2643221684 | 2644474934 | 505 |
| 141 | 3300003322 | rootL2_10048291 | rootL2_100482914 | 506 |
| 142 | 3300026089 | Ga0207648_10131218 | Ga0207648_101312182 | 506 |
| 143 | 3300035695 | Ga0373927_0036227 | Ga0373927_0036227_1004_2524 | 506 |
| 144 | 3300035695 | Ga0373927_0097172 | Ga0373927_0097172_87_1607 | 506 |
| 145 | 3300046459 | Ga0495629_0041495 | Ga0495629_0041495_878_2398 | 506 |
| 146 | 3300046460 | Ga0495638_0003510 | Ga0495638_0003510_4872_6407 | 506 |
| 147 | 3300046471 | Ga0495650_0000317 | Ga0495650_0000317_5808_7340 | 506 |
| 148 | 3300046472 | Ga0495580_0005212 | Ga0495580_0005212_9068_10615 | 506 |
| 149 | 3300046472 | Ga0495580_0022944 | Ga0495580_0022944_407_1927 | 506 |
| 150 | 3300046507 | Ga0495606_0000066 | Ga0495606_0000066_134618_136150 | 506 |
| 151 | 3300046514 | Ga0495618_0044464 | Ga0495618_0044464_338_1885 | 506 |
| 152 | 3300046517 | Ga0495630_0051031 | Ga0495630_0051031_1134_2654 | 506 |
| 153 | 3300046517 | Ga0495630_0070131 | Ga0495630_0070131_191_1738 | 506 |
| 154 | 3300046535 | Ga0495586_0011832 | Ga0495586_0011832_2262_3782 | 506 |
| 155 | 3300046683 | Ga0495658_0017265 | Ga0495658_0017265_595_2115 | 506 |
| 156 | 3300047315 | Ga0495581_0028978 | Ga0495581_0028978_1156_2676 | 506 |
| 157 | 3300049571 | Ga0501034_0001831 | Ga0501034_0001831_9541_11067 | 506 |
| 158 | iso_pu_bacteria | 2928963466 | 2928963804 | 506 |
| 159 | 3300005564 | Ga0070664_100007032 | Ga0070664_1000070328 | 507 |
| 160 | 3300005577 | Ga0068857_100000663 | Ga0068857_10000066319 | 507 |
| 161 | 3300006847 | Ga0075431_100105933 | Ga0075431_1001059332 | 507 |
| 162 | 3300026116 | Ga0207674_10002442 | Ga0207674_1000244218 | 507 |
| 163 | 3300050510 | nmdc:mga06r32_92784_c1 | nmdc:mga06r32_92784_c1_1041_2585 | 507 |
| 164 | 3300031548 | Ga0307408_100015702 | Ga0307408_1000157024 | 508 |
| 165 | 3300031731 | Ga0307405_10044571 | Ga0307405_100445712 | 508 |
| 166 | 3300031824 | Ga0307413_10005659 | Ga0307413_100056593 | 508 |
| 167 | 3300031852 | Ga0307410_10006147 | Ga0307410_100061474 | 508 |
| 168 | 3300031903 | Ga0307407_10003983 | Ga0307407_100039836 | 508 |
| 169 | 3300031995 | Ga0307409_100008279 | Ga0307409_1000082794 | 508 |
| 170 | 3300032002 | Ga0307416_100037752 | Ga0307416_1000377522 | 508 |
| 171 | 3300032005 | Ga0307411_10001241 | Ga0307411_1000124112 | 508 |
| 172 | 3300006871 | Ga0075434_100040559 | Ga0075434_1000405592 | 509 |
| 173 | 3300025246 | Ga0209646_1000054 | Ga0209646_100005488 | 509 |
| 174 | 3300050512 | nmdc:mga0n895_38628_c1 | nmdc:mga0n895_38628_c1_181_1728 | 509 |
| 175 | iso_pu_bacteria | 2524023207 | 2524454299 | 509 |
| 176 | 3300005331 | Ga0070670_100000339 | Ga0070670_10000033928 | 510 |
| 177 | 3300005618 | Ga0068864_100000379 | Ga0068864_10000037916 | 510 |
| 178 | 3300025923 | Ga0207681_10006088 | Ga0207681_100060883 | 510 |
| 179 | 3300025925 | Ga0207650_10000008 | Ga0207650_10000008432 | 510 |
| 180 | 3300026095 | Ga0207676_10000264 | Ga0207676_1000026432 | 510 |
| 181 | 3300049579 | Ga0501043_0036134 | Ga0501043_0036134_1141_2712 | 510 |
| 182 | 3300049581 | Ga0501047_0002069 | Ga0501047_0002069_4829_6400 | 510 |
| 183 | 3300036401 | Ga0373937_0000705 | Ga0373937_0000705_12935_14524 | 511 |
| 184 | 3300049584 | Ga0501068_0045955 | Ga0501068_0045955_759_2339 | 511 |
| 185 | 3300009177 | Ga0105248_10164299 | Ga0105248_101642992 | 512 |
| 186 | 3300013308 | Ga0157375_10058160 | Ga0157375_100581602 | 512 |
| 187 | 3300032002 | Ga0307416_100122629 | Ga0307416_1001226292 | 512 |
| 188 | 3300046557 | Ga0495622_0020576 | Ga0495622_0020576_990_2534 | 512 |
| 189 | 3300049575 | Ga0501039_0034324 | Ga0501039_0034324_2293_3837 | 513 |
| 190 | 3300049578 | Ga0501042_0096699 | Ga0501042_0096699_447_1991 | 513 |
| 191 | 3300049592 | Ga0501076_0009582 | Ga0501076_0009582_1152_2696 | 513 |
| 192 | 3300049743 | Ga0501081_0047703 | Ga0501081_0047703_714_2258 | 513 |
| 193 | 3300049824 | Ga0501045_0010184 | Ga0501045_0010184_4477_6021 | 513 |
| 194 | 3300060353 | Ga0501082_0036128 | Ga0501082_0036128_1262_2806 | 513 |
| 195 | 3300037312 | Ga0395899_0000997 | Ga0395899_0000997_23190_24734 | 514 |
| 196 | 3300037418 | Ga0395900_0001462 | Ga0395900_0001462_23071_24615 | 514 |
| 197 | 3300037466 | Ga0395898_0001808 | Ga0395898_0001808_20650_22194 | 514 |
| 198 | 3300037471 | Ga0395905_0001465 | Ga0395905_0001465_3563_5107 | 514 |
| 199 | 3300038443 | Ga0395901_0001213 | Ga0395901_0001213_23190_24734 | 514 |
| 200 | 3300025225 | Ga0209566_101634 | Ga0209566_1016345 | 515 |
| 201 | 3300002459 | JGI24751J29686_10003571 | JGI24751J29686_100035711 | 537 |
| 202 | 3300005331 | Ga0070670_100002660 | Ga0070670_1000026609 | 537 |
| 203 | 3300005347 | Ga0070668_100002607 | Ga0070668_1000026073 | 537 |
| 204 | 3300005355 | Ga0070671_100000027 | Ga0070671_100000027116 | 537 |
| 205 | 3300005367 | Ga0070667_100000004 | Ga0070667_10000000443 | 537 |
| 206 | 3300005841 | Ga0068863_100007183 | Ga0068863_1000071833 | 537 |
| 207 | 3300005843 | Ga0068860_100000002 | Ga0068860_10000000228 | 537 |
| 208 | 3300005844 | Ga0068862_100002573 | Ga0068862_1000025737 | 537 |
| 209 | 3300025925 | Ga0207650_10002924 | Ga0207650_100029248 | 537 |
| 210 | 3300025931 | Ga0207644_10000064 | Ga0207644_1000006432 | 537 |
| 211 | 3300025972 | Ga0207668_10000024 | Ga0207668_10000024113 | 537 |
| 212 | 3300025986 | Ga0207658_10000002 | Ga0207658_10000002335 | 537 |
| 213 | 3300026088 | Ga0207641_10000475 | Ga0207641_1000047542 | 537 |
| 214 | 3300028380 | Ga0268265_10000204 | Ga0268265_1000020435 | 537 |
| 215 | 3300028381 | Ga0268264_10000001 | Ga0268264_10000001660 | 537 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4ga4-assembly1.cif.gz_B | crystal structure of amp phosphorylase n-terminal deletion mutant | 0.9315 | 131 | 536 |
| 1brw-assembly1.cif.gz_B | the crystal structure of pyrimidine nucleoside phosphorylase in a closed conformation | 0.9181 | 131 | 536 |
| 2wk6-assembly1.cif.gz_B | structural features of native human thymidine phosphorylase and in complex with 5-iodouracil | 0.9073 | 132 | 536 |
| 4ga4-assembly1.cif.gz_B | crystal structure of amp phosphorylase n-terminal deletion mutant | 0.9037 | 131 | 536 |
| 2wk5-assembly2.cif.gz_B | structural features of native human thymidine phosphorylase and in complex with 5-iodouracil | 0.8952 | 127 | 536 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4ga4A01 | Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.9759 | 131 | 195 | 1.20.970.10 |
| 4ga5B04 | Alpha Beta;Alpha-Beta Complex;Aldehyde Oxidoreductase; domain 3;Pyrimidine nucleoside phosphorylase-like, C-terminal domain | 0.9745 | 453 | 534 | 3.90.1170.30 |
| 4ga4B01 | Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.9732 | 131 | 195 | 1.20.970.10 |
| 4ga5B04 | Alpha Beta;Alpha-Beta Complex;Aldehyde Oxidoreductase; domain 3;Pyrimidine nucleoside phosphorylase-like, C-terminal domain | 0.9629 | 453 | 534 | 3.90.1170.30 |
| 4ga5B02 | Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3; | 0.959 | 128 | 367 | 1.20.970.50 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A3M1KMD9-F1-model_v4 | Pyrimidine nucleoside phosphorylase C-terminal domain-containing protein | 0.9937 | 453 | 535 |
GO:0006213
GO:0016763 |
| AF-A0A3B9GZ85-F1-model_v4 | Thymidine phosphorylase (EC 2.4.2.4) | 0.9879 | 245 | 534 |
GO:0004645
GO:0005829 GO:0006206 GO:0006213 GO:0009032 |
| AF-A0A258BY19-F1-model_v4 | Pyrimidine nucleoside phosphorylase C-terminal domain-containing protein | 0.9863 | 372 | 534 |
GO:0004645
GO:0005829 GO:0006206 GO:0006213 GO:0016763 |
| AF-A0A7W4VED0-F1-model_v4 | Thymidine phosphorylase | 0.985 | 452 | 534 |
GO:0006213
GO:0016763 |
| AF-W7W745-F1-model_v4 | Thymidine phosphorylase | 0.9831 | 382 | 537 |
GO:0004645
GO:0005829 GO:0006206 GO:0006213 GO:0016763 |
Predicted Structure (AlphaFold2)
Powered by PDBe Molstar