F325374

General Info

Members Datasets Scaffolds Average Seq Length
214 120 428 237

Family's Representative Sequence

Representative Sequence 3300031824|Ga0307413_10043050|Ga0307413_100430502
Length 235
Sequence VQRLRVRYAKRGRLRFTSHRDFSRAFERAIVRAGVPMAYSSGFNPHPRISYAGASPTGAASEAEYLEVGLARTTEPVEVLRALDAALPPGLDVLEVVESRGGSLSDLLEASVWRSTVPDLPPETASATVHGFLAADEVLVERMTKKGLRTFDCRAAVVSLSAAAGTVGDRECAILDMVLRHGTPTVRPDDVLAGLRTMAGLEATVAPFHERLAQGPLDAENGTVGDPLVLNRDTA

Samples

Sample ID Description Type Environment
1 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
14 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
18 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
19 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
22 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
23 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
24 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
25 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
26 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
27 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
28 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
34 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
37 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
38 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
39 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
42 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
43 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
46 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
47 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
48 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
49 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
50 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
51 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
52 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
53 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
54 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
55 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
56 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
57 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
58 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
59 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
60 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
61 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
64 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
65 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
66 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
67 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
68 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
69 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
70 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
71 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
72 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
73 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
74 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
75 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
76 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
77 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
85 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
86 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
87 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
88 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
89 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
90 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
91 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
92 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
96 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
97 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
98 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
99 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
100 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
101 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
102 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
103 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
104 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
105 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
106 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
107 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
108 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
109 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
110 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
111 2643221561 Nocardioides sp. Root151 Isolate Unclassified
112 2643221615 Nocardioides sp. Root224 Isolate Unclassified
113 2643221641 Nocardioides sp. Root122 Isolate Unclassified
114 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
115 2643221696 Nocardioides sp. Root140 Isolate Unclassified
116 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
117 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
118 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
119 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
120 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95.33
Metatranscriptomes 0
Isolates 4.67

Biome Distribution

Category Percentage (%)
Aerial Root 0.93
Bulb 0
Endosphere 29.44
Nodule 0.47
Rhizoplane 6.54
Rhizosphere 58.41
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307413_10043050 3300031824 Bacteria 2658
2 LJQas_1010748 3300000549 Bacteria 1094
3 Ga0070683_100257051 3300005329 Bacteria 1661
4 Ga0070683_100293733 3300005329 Bacteria 1546
5 Ga0070682_100038905 3300005337 Bacteria 2920
6 Ga0068868_100470855 3300005338 Bacteria 1096
7 Ga0070691_10136710 3300005341 Bacteria 1246
8 Ga0070667_100212422 3300005367 Bacteria 1720
9 Ga0070698_100049759 3300005471 Bacteria 4276
10 Ga0070684_100188738 3300005535 Bacteria 1875
11 Ga0070684_100306366 3300005535 Bacteria 1458
12 Ga0070665_100001782 3300005548 Bacteria 24532
13 Ga0070665_100273928 3300005548 Bacteria 1689
14 Ga0068864_100314507 3300005618 Bacteria 1469
15 Ga0068860_100001180 3300005843 Bacteria 28624
16 Ga0075365_10007034 3300006038 Bacteria 6264
17 Ga0075365_10009989 3300006038 Bacteria 5498
18 Ga0075365_10011150 3300006038 Bacteria 5273
19 Ga0075365_10034935 3300006038 Bacteria 3249
20 Ga0075365_10036723 3300006038 Bacteria 3176
21 Ga0075365_10057215 3300006038 Bacteria 2594
22 Ga0075365_10064905 3300006038 Bacteria 2447
23 Ga0075365_10127920 3300006038 Bacteria 1756
24 Ga0075368_10009045 3300006042 Bacteria 3575
25 Ga0075368_10020223 3300006042 Bacteria 2518
26 Ga0075368_10023568 3300006042 Bacteria 2352
27 Ga0075363_100001519 3300006048 Bacteria 8874
28 Ga0075363_100016138 3300006048 Bacteria 3684
29 Ga0075363_100017255 3300006048 Bacteria 3577
30 Ga0075364_10009881 3300006051 Bacteria 5741
31 Ga0075364_10034128 3300006051 Bacteria 3280
32 Ga0075364_10065614 3300006051 Bacteria 2383
33 Ga0075364_10067461 3300006051 Bacteria 2351
34 Ga0075364_10120716 3300006051 Bacteria 1754
35 Ga0075362_10085872 3300006177 Bacteria 1455
36 Ga0075367_10047577 3300006178 Bacteria 2524
37 Ga0075367_10047585 3300006178 Bacteria 2524
38 Ga0075367_10050842 3300006178 Bacteria 2448
39 Ga0075367_10079924 3300006178 Bacteria 1977
40 Ga0075367_10175098 3300006178 Bacteria 1337
41 Ga0075367_10231406 3300006178 Bacteria 1157
42 Ga0075370_10032683 3300006353 Bacteria 2910
43 Ga0075370_10036621 3300006353 Bacteria 2756
44 Ga0075370_10044584 3300006353 Bacteria 2507
45 Ga0105245_10441394 3300009098 Bacteria 1308
46 Ga0105245_10482986 3300009098 Bacteria 1252
47 Ga0105245_10494976 3300009098 Bacteria 1238
48 Ga0105243_10350087 3300009148 Bacteria 1356
49 Ga0105249_11238212 3300009553 Bacteria 817
50 Ga0157372_11600795 3300013307 Bacteria 750
51 Ga0157375_11096557 3300013308 Bacteria 932
52 Ga0157380_10790089 3300014326 Bacteria 965
53 Ga0157377_10272452 3300014745 Bacteria 1106
54 Ga0163161_10195198 3300017792 Bacteria 1558
55 Ga0207669_10249478 3300025937 Bacteria 1321
56 Ga0207661_10002327 3300025944 Bacteria 13090
57 Ga0207661_10032960 3300025944 Bacteria 4019
58 Ga0207658_10192010 3300025986 Bacteria 1698
59 Ga0207677_10121756 3300026023 Bacteria 1964
60 Ga0207698_10417174 3300026142 Bacteria 1287
61 Ga0209813_10010094 3300027866 Bacteria 2433
62 Ga0209813_10022950 3300027866 Bacteria 1770
63 Ga0268266_10008488 3300028379 Bacteria 9130
64 Ga0268264_10000987 3300028381 Bacteria 29098
65 Ga0314311_1025512 3300030733 Bacteria 1126
66 Ga0307408_100164231 3300031548 Bacteria 1767
67 Ga0307405_10013438 3300031731 Bacteria 4367
68 Ga0307405_10615456 3300031731 Bacteria 888
69 Ga0307413_10050094 3300031824 Bacteria 2507
70 Ga0307410_10009256 3300031852 Bacteria 5515
71 Ga0307410_10019892 3300031852 Bacteria 4095
72 Ga0307406_10090375 3300031901 Bacteria 2060
73 Ga0307407_10001358 3300031903 Bacteria 8803
74 Ga0307412_10419793 3300031911 Bacteria 1094
75 Ga0307409_100002474 3300031995 Bacteria 9674
76 Ga0307409_100014226 3300031995 Bacteria 5163
77 Ga0307409_100042236 3300031995 Bacteria 3413
78 Ga0307409_100139550 3300031995 Bacteria 2086
79 Ga0307409_100164409 3300031995 Bacteria 1945
80 Ga0307409_100309811 3300031995 Bacteria 1473
81 Ga0307409_100387746 3300031995 Bacteria 1330
82 Ga0307416_100022470 3300032002 Bacteria 4554
83 Ga0307416_100077419 3300032002 Bacteria 2793
84 Ga0307416_100105647 3300032002 Bacteria 2466
85 Ga0307416_100156813 3300032002 Bacteria 2097
86 Ga0307414_10005149 3300032004 Bacteria 7171
87 Ga0307414_10195316 3300032004 Bacteria 1641
88 Ga0307411_10013676 3300032005 Bacteria 4488
89 Ga0307415_100000363 3300032126 Bacteria 19318
90 Ga0307415_100003120 3300032126 Bacteria 8393
91 Ga0307415_100084827 3300032126 Bacteria 2274
92 Ga0395901_0179568 3300038443 Bacteria 2220
93 Ga0439447_057376 3300041407 Bacteria 920
94 Ga0451793_1855035 3300041452 Bacteria 1340
95 Ga0451837_1385365 3300041494 Bacteria 1208
96 Ga0451847_0935834 3300041503 Bacteria 1031
97 Ga0439445_0020836 3300042004 Bacteria 1644
98 Ga0450888_005788 3300042126 Bacteria 1329
99 Ga0439446_0023174 3300042156 Bacteria 1764
100 Ga0439434_0008465 3300042435 Bacteria 3016
101 Ga0466965_0078296 3300044683 Bacteria 1670
102 Ga0466965_0096787 3300044683 Bacteria 1506
103 Ga0466965_0109169 3300044683 Bacteria 1421
104 Ga0466965_0172450 3300044683 Bacteria 1138
105 Ga0466961_0020069 3300044693 Bacteria 4301
106 Ga0466964_0104848 3300044706 Bacteria 1252
107 Ga0466964_0294319 3300044706 Bacteria 816
108 Ga0466968_0131858 3300044735 Bacteria 1138
109 Ga0466970_0039493 3300044765 Bacteria 2504
110 Ga0466970_0051395 3300044765 Bacteria 2199
111 Ga0466970_0054463 3300044765 Bacteria 2136
112 Ga0466970_0251221 3300044765 Bacteria 991
113 Ga0466957_0025468 3300044842 Bacteria 3506
114 Ga0466957_0120614 3300044842 Bacteria 1671
115 Ga0466960_0000552 3300044901 Bacteria 12890
116 Ga0466960_0015272 3300044901 Bacteria 3307
117 Ga0466960_0035483 3300044901 Bacteria 2331
118 Ga0466960_0036929 3300044901 Bacteria 2290
119 Ga0466960_0089979 3300044901 Bacteria 1563
120 Ga0466960_0109026 3300044901 Bacteria 1436
121 Ga0466958_0470135 3300045836 Bacteria 815
122 Ga0466967_0075809 3300045976 Bacteria 3024
123 Ga0466967_0356013 3300045976 Bacteria 1417
124 Ga0466967_0365124 3300045976 Bacteria 1399
125 Ga0495603_0341317 3300046455 Bacteria 859
126 Ga0496101_0220391 3300048904 Bacteria 1472
127 Ga0496103_0146350 3300048906 Bacteria 1512
128 Ga0496104_0047123 3300048907 Bacteria 4062
129 Ga0496105_0091849 3300048908 Bacteria 2507
130 Ga0496107_0108840 3300048910 Bacteria 2035
131 Ga0496107_0275104 3300048910 Bacteria 1253
132 Ga0496108_0180981 3300048911 Bacteria 1825
133 Ga0496109_0230685 3300048912 Bacteria 1741
134 Ga0496110_0102975 3300048913 Bacteria 2560
135 Ga0496110_0755312 3300048913 Bacteria 876
136 Ga0496111_0102142 3300048914 Bacteria 2107
137 Ga0496112_0318941 3300048915 Bacteria 1498
138 Ga0496114_0319795 3300048917 Bacteria 1371
139 Ga0501034_0155288 3300049571 Bacteria 2263
140 Ga0501036_0693886 3300049572 Bacteria 841
141 Ga0501037_0125175 3300049573 Bacteria 1846
142 Ga0501038_0158942 3300049574 Bacteria 1838
143 Ga0501039_0044126 3300049575 Bacteria 3443
144 Ga0501041_0187657 3300049577 Bacteria 1295
145 Ga0501067_0018842 3300049583 Bacteria 3819
146 Ga0501067_0029276 3300049583 Bacteria 3052
147 Ga0501068_0037108 3300049584 Bacteria 2917
148 Ga0501068_0332635 3300049584 Bacteria 975
149 Ga0501069_0024944 3300049585 Bacteria 3265
150 Ga0501069_0058981 3300049585 Bacteria 2141
151 Ga0501070_0014524 3300049586 Bacteria 6625
152 Ga0501070_0014838 3300049586 Bacteria 6554
153 Ga0501070_0089031 3300049586 Bacteria 2554
154 Ga0501070_0354963 3300049586 Bacteria 1190
155 Ga0501073_0027854 3300049589 Bacteria 4037
156 Ga0501074_0008473 3300049590 Bacteria 7451
157 Ga0501074_0010014 3300049590 Bacteria 6880
158 Ga0501074_0017194 3300049590 Bacteria 5247
159 Ga0501074_0080774 3300049590 Bacteria 2332
160 Ga0501079_0076797 3300049741 Bacteria 2583
161 Ga0501080_0009070 3300049742 Bacteria 9052
162 Ga0501080_0054099 3300049742 Bacteria 3738
163 Ga0501080_0150660 3300049742 Bacteria 2150
164 Ga0501080_0600173 3300049742 Bacteria 977
165 Ga0501083_0063239 3300049744 Bacteria 2468
166 Ga0501083_0489586 3300049744 Bacteria 800
167 Ga0501044_0393376 3300049823 Bacteria 1300
168 Ga0501045_0178967 3300049824 Bacteria 1580
169 Ga0501212_012886 3300049851 Bacteria 1222
170 nmdc:mga03683_88255_c1 3300050489 Bacteria 1349
171 nmdc:mga03n38_1376_c1 3300050490 Bacteria 6903
172 nmdc:mga03n38_3958_c1 3300050490 Bacteria 4836
173 nmdc:mga00v17_109000_c1 3300050491 Bacteria 1755
174 nmdc:mga00v17_179923_c1 3300050491 Bacteria 1364
175 nmdc:mga00v17_232526_c1 3300050491 Bacteria 1194
176 nmdc:mga00v17_61821_c1 3300050491 Bacteria 2303
177 nmdc:mga0yw44_11370_c1 3300050492 Bacteria 4590
178 nmdc:mga0yw44_166564_c1 3300050492 Bacteria 841
179 nmdc:mga0yw44_18784_c1 3300050492 Bacteria 3796
180 nmdc:mga0yw44_194149_c1 3300050492 Bacteria 1340
181 nmdc:mga0yw44_201602_c1 3300050492 Bacteria 1314
182 nmdc:mga0yw44_22829_c1 3300050492 Bacteria 3515
183 nmdc:mga0yw44_255567_c1 3300050492 Bacteria 1167
184 nmdc:mga0yw44_366918_c1 3300050492 Bacteria 971
185 nmdc:mga0yw44_3984_c1 3300050492 Bacteria 6672
186 nmdc:mga0yw44_42617_c1 3300050492 Bacteria 2707
187 nmdc:mga0yw44_455056_c1 3300050492 Bacteria 867
188 nmdc:mga0yw44_90208_c1 3300050492 Bacteria 1936
189 nmdc:mga06z11_133686_c1 3300050494 Bacteria 1396
190 nmdc:mga06z11_146834_c1 3300050494 Bacteria 1337
191 nmdc:mga06z11_32777_c1 3300050494 Bacteria 2536
192 nmdc:mga06z11_426583_c1 3300050494 Bacteria 800
193 nmdc:mga06z11_7688_c1 3300050494 Bacteria 4450
194 nmdc:mga04h51_11853_c1 3300050495 Bacteria 2432
195 nmdc:mga07m45_19473_c1 3300050496 Bacteria 3678
196 nmdc:mga07m45_32140_c1 3300050496 Bacteria 2910
197 Ga0500644_0000128 3300053088 Bacteria 46307
198 Ga0500554_161418 3300053102 Bacteria 756
199 Ga0500556_0000417 3300053104 Bacteria 30638
200 Ga0500593_000917 3300053117 Bacteria 10950
201 Ga0500573_0020475 3300053140 Bacteria 3789
202 Ga0501084_0092236 3300054114 Bacteria 2543
203 Ga0466962_0104796 3300061719 Bacteria 1359
204 Ga0530510_0542303 3300061734 Bacteria 883
205 2643828131 2643221561 Bacteria 4984412
206 2644090071 2643221615 Bacteria 5487866
207 2644231317 2643221641 Bacteria 4490190
208 2644319916 2643221657 Bacteria 5490246
209 2644531220 2643221696 Bacteria 5431823
210 2855387464 2855386786 Bacteria 4752232
211 2857484881 2857481737 Bacteria 4761446
212 2984579134 2984576629 Bacteria 4248407
213 2990259972 2990256926 Bacteria 4252839
214 8054612373 8054609563 Bacteria 5170090
215 Ga0307413_10043050
216 LJQas_1010748
217 Ga0070683_100257051
218 Ga0070683_100293733
219 Ga0070682_100038905
220 Ga0068868_100470855
221 Ga0070691_10136710
222 Ga0070667_100212422
223 Ga0070698_100049759
224 Ga0070684_100188738
225 Ga0070684_100306366
226 Ga0070665_100001782
227 Ga0070665_100273928
228 Ga0068864_100314507
229 Ga0068860_100001180
230 Ga0075365_10007034
231 Ga0075365_10009989
232 Ga0075365_10011150
233 Ga0075365_10034935
234 Ga0075365_10036723
235 Ga0075365_10057215
236 Ga0075365_10064905
237 Ga0075365_10127920
238 Ga0075368_10009045
239 Ga0075368_10020223
240 Ga0075368_10023568
241 Ga0075363_100001519
242 Ga0075363_100016138
243 Ga0075363_100017255
244 Ga0075364_10009881
245 Ga0075364_10034128
246 Ga0075364_10065614
247 Ga0075364_10067461
248 Ga0075364_10120716
249 Ga0075362_10085872
250 Ga0075367_10047577
251 Ga0075367_10047585
252 Ga0075367_10050842
253 Ga0075367_10079924
254 Ga0075367_10175098
255 Ga0075367_10231406
256 Ga0075370_10032683
257 Ga0075370_10036621
258 Ga0075370_10044584
259 Ga0105245_10441394
260 Ga0105245_10482986
261 Ga0105245_10494976
262 Ga0105243_10350087
263 Ga0105249_11238212
264 Ga0157372_11600795
265 Ga0157375_11096557
266 Ga0157380_10790089
267 Ga0157377_10272452
268 Ga0163161_10195198
269 Ga0207669_10249478
270 Ga0207661_10002327
271 Ga0207661_10032960
272 Ga0207658_10192010
273 Ga0207677_10121756
274 Ga0207698_10417174
275 Ga0209813_10010094
276 Ga0209813_10022950
277 Ga0268266_10008488
278 Ga0268264_10000987
279 Ga0314311_1025512
280 Ga0307408_100164231
281 Ga0307405_10013438
282 Ga0307405_10615456
283 Ga0307413_10050094
284 Ga0307410_10009256
285 Ga0307410_10019892
286 Ga0307406_10090375
287 Ga0307407_10001358
288 Ga0307412_10419793
289 Ga0307409_100002474
290 Ga0307409_100014226
291 Ga0307409_100042236
292 Ga0307409_100139550
293 Ga0307409_100164409
294 Ga0307409_100309811
295 Ga0307409_100387746
296 Ga0307416_100022470
297 Ga0307416_100077419
298 Ga0307416_100105647
299 Ga0307416_100156813
300 Ga0307414_10005149
301 Ga0307414_10195316
302 Ga0307411_10013676
303 Ga0307415_100000363
304 Ga0307415_100003120
305 Ga0307415_100084827
306 Ga0395901_0179568
307 Ga0439447_057376
308 Ga0451793_1855035
309 Ga0451837_1385365
310 Ga0451847_0935834
311 Ga0439445_0020836
312 Ga0450888_005788
313 Ga0439446_0023174
314 Ga0439434_0008465
315 Ga0466965_0078296
316 Ga0466965_0096787
317 Ga0466965_0109169
318 Ga0466965_0172450
319 Ga0466961_0020069
320 Ga0466964_0104848
321 Ga0466964_0294319
322 Ga0466968_0131858
323 Ga0466970_0039493
324 Ga0466970_0051395
325 Ga0466970_0054463
326 Ga0466970_0251221
327 Ga0466957_0025468
328 Ga0466957_0120614
329 Ga0466960_0000552
330 Ga0466960_0015272
331 Ga0466960_0035483
332 Ga0466960_0036929
333 Ga0466960_0089979
334 Ga0466960_0109026
335 Ga0466958_0470135
336 Ga0466967_0075809
337 Ga0466967_0356013
338 Ga0466967_0365124
339 Ga0495603_0341317
340 Ga0496101_0220391
341 Ga0496103_0146350
342 Ga0496104_0047123
343 Ga0496105_0091849
344 Ga0496107_0108840
345 Ga0496107_0275104
346 Ga0496108_0180981
347 Ga0496109_0230685
348 Ga0496110_0102975
349 Ga0496110_0755312
350 Ga0496111_0102142
351 Ga0496112_0318941
352 Ga0496114_0319795
353 Ga0501034_0155288
354 Ga0501036_0693886
355 Ga0501037_0125175
356 Ga0501038_0158942
357 Ga0501039_0044126
358 Ga0501041_0187657
359 Ga0501067_0018842
360 Ga0501067_0029276
361 Ga0501068_0037108
362 Ga0501068_0332635
363 Ga0501069_0024944
364 Ga0501069_0058981
365 Ga0501070_0014524
366 Ga0501070_0014838
367 Ga0501070_0089031
368 Ga0501070_0354963
369 Ga0501073_0027854
370 Ga0501074_0008473
371 Ga0501074_0010014
372 Ga0501074_0017194
373 Ga0501074_0080774
374 Ga0501079_0076797
375 Ga0501080_0009070
376 Ga0501080_0054099
377 Ga0501080_0150660
378 Ga0501080_0600173
379 Ga0501083_0063239
380 Ga0501083_0489586
381 Ga0501044_0393376
382 Ga0501045_0178967
383 Ga0501212_012886
384 nmdc:mga03683_88255_c1
385 nmdc:mga03n38_1376_c1
386 nmdc:mga03n38_3958_c1
387 nmdc:mga00v17_109000_c1
388 nmdc:mga00v17_179923_c1
389 nmdc:mga00v17_232526_c1
390 nmdc:mga00v17_61821_c1
391 nmdc:mga0yw44_11370_c1
392 nmdc:mga0yw44_166564_c1
393 nmdc:mga0yw44_18784_c1
394 nmdc:mga0yw44_194149_c1
395 nmdc:mga0yw44_201602_c1
396 nmdc:mga0yw44_22829_c1
397 nmdc:mga0yw44_255567_c1
398 nmdc:mga0yw44_366918_c1
399 nmdc:mga0yw44_3984_c1
400 nmdc:mga0yw44_42617_c1
401 nmdc:mga0yw44_455056_c1
402 nmdc:mga0yw44_90208_c1
403 nmdc:mga06z11_133686_c1
404 nmdc:mga06z11_146834_c1
405 nmdc:mga06z11_32777_c1
406 nmdc:mga06z11_426583_c1
407 nmdc:mga06z11_7688_c1
408 nmdc:mga04h51_11853_c1
409 nmdc:mga07m45_19473_c1
410 nmdc:mga07m45_32140_c1
411 Ga0500644_0000128
412 Ga0500554_161418
413 Ga0500556_0000417
414 Ga0500593_000917
415 Ga0500573_0020475
416 Ga0501084_0092236
417 Ga0466962_0104796
418 Ga0530510_0542303
419 2643828131
420 2644090071
421 2644231317
422 2644319916
423 2644531220
424 2855387464
425 2857484881
426 2984579134
427 2990259972
428 8054612373

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10105

DUF2344

Uncharacterized protein conserved in bacteria (DUF2344)

3

188

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.6238 10 232
2ey4-assembly1.cif.gz_A crystal structure of a cbf5-nop10-gar1 complex 0.6196 18 220
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.6181 10 231
4nz6-assembly1.cif.gz_A steroid receptor rna activator (sra) modification by the human pseudouridine synthase 1 (hpus1p): rna binding, activity, and atomic model 0.6063 13 221
7trc-assembly1.cif.gz_C human telomerase h/aca rnp at 3.3 angstrom 0.6044 18 226
ID Description Score Start End Superfamily
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.7921 14 114 3.30.70.580
2nqpB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.7607 10 116 3.30.70.580
1vs3B01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.752 12 113 3.30.70.580
af_K7N408_73_210_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.7454 13 116 3.30.70.580
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.7377 14 114 3.30.70.580
ID Description Score Start End GO Terms
AF-A0A6J7DY39-F1-model_v4 Unannotated protein 0.931 72 233
AF-A0A841IP71-F1-model_v4 Radical SAM-linked protein 0.9276 25 234
AF-A0A838H8X2-F1-model_v4 DUF2344 domain-containing protein 0.9259 7 118
AF-A0A7K2P030-F1-model_v4 DUF2344 domain-containing protein 0.9183 12 106
AF-A0A077M324-F1-model_v4 DUF2344 domain-containing protein 0.9148 25 234

Map