F324637

General Info

Members Datasets Scaffolds Average Seq Length
213 161 426 558

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2887443736|2887445972
Length 607
Sequence AAPEASKARCGKVLIANRGEIAVRVARACRDAGLASVGVYADSDRDAQHVQLVDEAFALHGSRAAETYLDIDKILDVARRSGADSVHPGYGFLSENADFARAVINAGLIWIGPPPAAIDALGDKVSARHIAQRAGAPLVAGTPDPVSDAGEVHAFATEHGLPIAIKAAFGGGGRGLKVARTAEDIDGMFDSAVREATAAFGRGECFVERFLDRPRHVETQCLADAHGTVVVVSTRDCTLQRRHQKLVEEAPAPFLSPEQDAQLREASIAILKEAGYRGAGTCEFLIGTDGTISFLEVNTRLQVEHCVSEEIAGIDLVREQFRIADGEELGYTEVTTRGHSLEFRINGEDPFGNFLPSPGTISSLRWPSGPGVRVDSGIVAGDTISGAFDSMLAKVIVTGATRTEALQRARRAISETEVTGIPTVLPFFRAVLADPEFAADRLEDFSVYTTWIENEFAARLAAQAEGATPVPAAAPAEADSDVERVVVEVGGKRLEVVLPAGLSIGGAGKGRQARRPARRSNGKSAAAVAGGNALASPMQGTIVKVAVADGELVAEGDLVVVLEAMKMEQPLVAHRAGRVHGLSAAVGQTVSSGSVICQIDEMPESGD

Samples

Sample ID Description Type Environment
1 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
12 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
15 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
26 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
27 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
38 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
41 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
42 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
43 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
44 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
45 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
46 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
47 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
48 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
49 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
52 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
53 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
54 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
55 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
56 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
57 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
58 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
59 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
60 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
63 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
64 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
65 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
66 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
67 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
68 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
69 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
70 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
71 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
72 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
73 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
74 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
75 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
76 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
77 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
78 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
79 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
80 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
81 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
82 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
83 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
97 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
98 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
102 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
105 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
106 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
110 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
111 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
112 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
113 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
114 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
115 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
116 2501939600 Micromonospora sp. L5 Isolate Unclassified
117 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
118 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
119 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
120 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
121 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
122 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
123 2643221572 Leifsonia sp. Root60 Isolate Unclassified
124 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
125 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
126 2643221721 Oerskovia sp. Root918 Isolate Unclassified
127 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
128 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
129 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
130 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
131 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
132 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
133 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
134 2808606394 Promicromonospora sp. C35 Isolate Unclassified
135 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
136 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
137 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
138 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
139 2855683550 Micromonospora sp. RP3T Isolate Unclassified
140 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
141 2858868258 Micromonospora sp. MH33 Isolate Unclassified
142 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
143 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
144 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
145 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
146 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
147 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
148 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
149 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
150 2902582711 Micromonospora sp. AP08 Isolate Unclassified
151 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
152 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
153 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
154 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
155 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
156 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
157 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
158 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
159 649633069 Micromonospora sp. L5 Isolate Unclassified
160 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
161 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77
Metatranscriptomes 0.47
Isolates 22.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.82
Nodule 0.47
Rhizoplane 0.94
Rhizosphere 74.18
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1059280 3300003578 Bacteria 5300
2 Ga0070658_10000044 3300005327 Bacteria 131465
3 Ga0070658_10015917 3300005327 Bacteria 6014
4 Ga0070683_100002971 3300005329 Bacteria 13595
5 Ga0070668_100004461 3300005347 Bacteria 10388
6 Ga0070668_100032112 3300005347 Bacteria 3995
7 Ga0070710_10010728 3300005437 Bacteria 4504
8 Ga0070681_10079159 3300005458 Bacteria 3243
9 Ga0070679_100024476 3300005530 Bacteria 5916
10 Ga0070684_100071885 3300005535 Bacteria 3044
11 Ga0070684_100128651 3300005535 Bacteria 2283
12 Ga0070665_100001076 3300005548 Bacteria 34008
13 Ga0070665_100161757 3300005548 Bacteria 2241
14 Ga0068855_100192133 3300005563 Bacteria 2302
15 Ga0068861_100004238 3300005719 Bacteria 9620
16 Ga0068858_100000013 3300005842 Bacteria 216466
17 Ga0068860_100000154 3300005843 Bacteria 111793
18 Ga0068860_100075373 3300005843 Bacteria 3209
19 Ga0081538_10021982 3300005981 Bacteria 4636
20 Ga0081538_10030787 3300005981 Bacteria 3635
21 Ga0081540_1041847 3300005983 Bacteria 2370
22 Ga0081539_10000837 3300005985 Bacteria 59104
23 Ga0081539_10002403 3300005985 Bacteria 26551
24 Ga0075369_10035711 3300006186 Bacteria 2114
25 Ga0075428_100000669 3300006844 Bacteria 35178
26 Ga0075428_100017636 3300006844 Bacteria 7887
27 Ga0075428_100092598 3300006844 Bacteria 3295
28 Ga0075430_100002894 3300006846 Bacteria 14361
29 Ga0075430_100006087 3300006846 Bacteria 10170
30 Ga0075430_100019282 3300006846 Bacteria 5797
31 Ga0075431_100000513 3300006847 Bacteria 32457
32 Ga0075431_100004872 3300006847 Bacteria 13219
33 Ga0075433_10022024 3300006852 Bacteria 5347
34 Ga0075429_100007957 3300006880 Bacteria 9211
35 Ga0114129_10000001 3300009147 Bacteria 292978
36 Ga0114129_10165866 3300009147 Bacteria 3014
37 Ga0114129_10177999 3300009147 Bacteria 2895
38 Ga0157369_10013261 3300013105 Bacteria 9325
39 Ga0163163_10013251 3300014325 Bacteria 7541
40 Ga0163163_10063544 3300014325 Bacteria 3661
41 Ga0163163_10183210 3300014325 Bacteria 2142
42 Ga0157379_10000006 3300014968 Bacteria 163550
43 Ga0157379_10018852 3300014968 Bacteria 6088
44 Ga0207692_10025224 3300025898 Bacteria 2774
45 Ga0207680_10017383 3300025903 Bacteria 3799
46 Ga0207700_10014200 3300025928 Bacteria 5212
47 Ga0207706_10005549 3300025933 Bacteria 11763
48 Ga0207711_10016030 3300025941 Bacteria 6217
49 Ga0207661_10002214 3300025944 Bacteria 13420
50 Ga0207661_10008993 3300025944 Bacteria 7156
51 Ga0207668_10009793 3300025972 Bacteria 5757
52 Ga0207703_10000009 3300026035 Bacteria 343983
53 Ga0207703_10035944 3300026035 Bacteria 3940
54 Ga0207641_10004017 3300026088 Bacteria 12837
55 Ga0207675_100008678 3300026118 Bacteria 9554
56 Ga0207428_10000877 3300027907 Bacteria 33814
57 Ga0268266_10001880 3300028379 Bacteria 23714
58 Ga0268264_10000210 3300028381 Bacteria 118222
59 Ga0307517_10054739 3300028786 Bacteria 3936
60 Ga0307515_10037893 3300028794 Bacteria 7732
61 Ga0307515_10099614 3300028794 Bacteria 3526
62 Ga0265338_10041685 3300028800 Bacteria 4290
63 Ga0307512_10011488 3300030522 Bacteria 8388
64 Ga0307512_10011645 3300030522 Bacteria 8321
65 Ga0265340_10003646 3300031247 Bacteria 8656
66 Ga0307513_10006441 3300031456 Bacteria 15342
67 Ga0307513_10025426 3300031456 Bacteria 6859
68 Ga0307509_10003555 3300031507 Bacteria 23479
69 Ga0307508_10006815 3300031616 Bacteria 10686
70 Ga0307508_10007256 3300031616 Bacteria 10325
71 Ga0307514_10116050 3300031649 Bacteria 1882
72 Ga0316576_10000283 3300031727 Bacteria 22294
73 Ga0316576_10002028 3300031727 Bacteria 11352
74 Ga0316576_10017046 3300031727 Bacteria 4926
75 Ga0307405_10055505 3300031731 Bacteria 2479
76 Ga0307405_10063113 3300031731 Bacteria 2348
77 Ga0307406_10033246 3300031901 Bacteria 3155
78 Ga0307409_100059240 3300031995 Bacteria 2979
79 Ga0307409_100071833 3300031995 Bacteria 2753
80 Ga0307409_100090710 3300031995 Bacteria 2502
81 Ga0307416_100001418 3300032002 Bacteria 13012
82 Ga0307416_100052488 3300032002 Bacteria 3264
83 Ga0307415_100022969 3300032126 Bacteria 3862
84 Ga0307415_100028805 3300032126 Bacteria 3539
85 Ga0307415_100103149 3300032126 Bacteria 2097
86 Ga0373956_0002161 3300035119 Bacteria 8122
87 Ga0373942_0000421 3300035207 Bacteria 11910
88 Ga0373935_0002839 3300035692 Bacteria 9967
89 Ga0395899_0009168 3300037312 Bacteria 7600
90 Ga0395900_0014962 3300037418 Bacteria 7907
91 Ga0395898_0009359 3300037466 Bacteria 10291
92 Ga0395901_0025283 3300038443 Bacteria 6095
93 Ga0395901_0097656 3300038443 Bacteria 3080
94 Ga0439448_0011961 3300042005 Bacteria 2591
95 Ga0439454_000360 3300042011 Bacteria 3473
96 Ga0439463_019354 3300042016 Bacteria 1696
97 Ga0439460_0000634 3300042461 Bacteria 7707
98 Ga0439440_0000147 3300042993 Bacteria 10246
99 Ga0466966_0043439 3300044684 Bacteria 2881
100 Ga0466963_0059190 3300044694 Bacteria 2556
101 Ga0495629_0105978 3300046459 Bacteria 1961
102 Ga0495594_0024930 3300046499 Bacteria 3214
103 Ga0495594_0061534 3300046499 Bacteria 2078
104 Ga0495668_0000522 3300046616 Bacteria 47895
105 Ga0495625_0008957 3300046660 Bacteria 8452
106 Ga0495635_0102317 3300046663 Bacteria 1958
107 Ga0495672_0016013 3300047320 Bacteria 5073
108 Ga0495626_0000127 3300048091 Bacteria 97134
109 Ga0496108_0000019 3300048911 Bacteria 234657
110 Ga0496112_0007762 3300048915 Bacteria 9549
111 Ga0496117_0051856 3300048920 Bacteria 2895
112 Ga0496119_0016815 3300048922 Bacteria 5539
113 Ga0496119_0039122 3300048922 Bacteria 3051
114 Ga0496120_0000623 3300048923 Bacteria 53226
115 Ga0496122_0002434 3300048925 Bacteria 26462
116 Ga0496125_0000015 3300048928 Bacteria 516648
117 Ga0501032_0009462 3300049569 Bacteria 7063
118 Ga0501032_0012881 3300049569 Bacteria 5961
119 Ga0501033_0012174 3300049570 Bacteria 6566
120 Ga0501033_0012570 3300049570 Bacteria 6459
121 Ga0501033_0026659 3300049570 Bacteria 4347
122 Ga0501033_0059260 3300049570 Bacteria 2827
123 Ga0501034_0052108 3300049571 Bacteria 4124
124 Ga0501034_0100061 3300049571 Bacteria 2893
125 Ga0501036_0012139 3300049572 Bacteria 7138
126 Ga0501037_0052621 3300049573 Bacteria 2977
127 Ga0501038_0103867 3300049574 Bacteria 2362
128 Ga0501039_0054625 3300049575 Bacteria 3092
129 Ga0501041_0001836 3300049577 Bacteria 11903
130 Ga0501043_0153485 3300049579 Bacteria 1801
131 Ga0501047_0011556 3300049581 Bacteria 8358
132 Ga0501047_0061261 3300049581 Bacteria 3630
133 Ga0501047_0081587 3300049581 Bacteria 3108
134 Ga0501048_0005350 3300049582 Bacteria 9768
135 Ga0501048_0096317 3300049582 Bacteria 2087
136 Ga0501070_0004467 3300049586 Bacteria 12013
137 Ga0501070_0044589 3300049586 Bacteria 3689
138 Ga0501074_0002477 3300049590 Bacteria 12873
139 Ga0501075_0002368 3300049591 Bacteria 12531
140 Ga0501076_0001719 3300049592 Bacteria 14792
141 Ga0501080_0067309 3300049742 Bacteria 3331
142 Ga0501035_0009576 3300049822 Bacteria 9007
143 Ga0501035_0010443 3300049822 Bacteria 8606
144 Ga0501035_0010823 3300049822 Bacteria 8447
145 Ga0501044_0026957 3300049823 Bacteria 6079
146 Ga0501045_0002056 3300049824 Bacteria 13589
147 nmdc:mga00v17_31135_c1 3300050491 Bacteria 3144
148 nmdc:mga0yw44_16149_c1 3300050492 Bacteria 4026
149 nmdc:mga05p37_143054_c1 3300050507 Bacteria 2930
150 nmdc:mga05p37_823_c1 3300050507 Bacteria 34775
151 nmdc:mga09592_16_c1 3300050508 Bacteria 97518
152 nmdc:mga09592_22479_c1 3300050508 Bacteria 5205
153 nmdc:mga0qj67_16_c1 3300050509 Bacteria 124323
154 nmdc:mga0qj67_290_c1 3300050509 Bacteria 34974
155 nmdc:mga0qj67_9209_c1 3300050509 Bacteria 7336
156 nmdc:mga06r32_308714_c1 3300050510 Bacteria 1567
157 nmdc:mga06r32_493_c1 3300050510 Bacteria 34078
158 nmdc:mga06r32_5588_c1 3300050510 Bacteria 11312
159 nmdc:mga08y16_12512_c1 3300050511 Bacteria 8927
160 nmdc:mga0a205_17059_c1 3300050515 Bacteria 6798
161 Ga0500651_0000817 3300053093 Bacteria 15240
162 Ga0500594_0001081 3300053118 Bacteria 5847
163 Ga0500600_0042984 3300053149 Bacteria 2600
164 Ga0501084_0000865 3300054114 Bacteria 23374
165 Ga0501082_0002007 3300060353 Bacteria 17894
166 2887445972 2887443736 Bacteria 4426037
167 2501942748 2501939600 Bacteria 6907073
168 2515493787 2515154088 Bacteria 5526283
169 2515722983 2515154129 Bacteria 5584369
170 2515755176 2515154137 Bacteria 5711575
171 2516084024 2515154202 Bacteria 5471270
172 2516087681 2515154203 Bacteria 5458536
173 2537897613 2537561592 Bacteria 4348607
174 2537899354 2537561592 Bacteria 4348607
175 2643874564 2643221572 Bacteria 3614809
176 2644381620 2643221669 Bacteria 3611286
177 2644527490 2643221694 Bacteria 4392972
178 2644665797 2643221721 Bacteria 4486924
179 2644667442 2643221722 Bacteria 4247614
180 2676481410 2675903059 Bacteria 8644972
181 2739607925 2739367654 Bacteria 6049412
182 2753270659 2751185782 Bacteria 11227053
183 2758224510 2757320536 Bacteria 3629334
184 2760621983 2758568621 Bacteria 5967089
185 2785341629 2784746763 Bacteria 9783172
186 2809026818 2808606394 Bacteria 6248540
187 2844856464 2844852863 Bacteria 3849151
188 2848552991 2848551377 Bacteria 3720646
189 2855671615 2855670206 Bacteria 7120389
190 2855679013 2855676851 Bacteria 7063653
191 2855684263 2855683550 Bacteria 7134265
192 2856860498 2856858025 Bacteria 7255264
193 2858875019 2858868258 Bacteria 7683772
194 2861521475 2861520306 Bacteria 8348283
195 2867303955 2867302475 Bacteria 7087181
196 2867313205 2867312974 Bacteria 7058875
197 2867324797 2867319477 Bacteria 7069771
198 2867350180 2867346516 Bacteria 7608576
199 2869067332 2869061728 Bacteria 7112407
200 2869070250 2869068681 Bacteria 7205615
201 2895663420 2895660088 Bacteria 3782833
202 2902586245 2902582711 Bacteria 6187705
203 2919057139 2919055335 Bacteria 3875751
204 2935893241 2935890801 Bacteria 4593001
205 2956941170 2956939328 Bacteria 3474458
206 2974317999 2974315732 Bacteria 4602776
207 2977251899 2977251589 Bacteria 2952848
208 2996227216 2996221748 Bacteria 6799777
209 3001120856 3001119090 Bacteria 3449530
210 3006495359 3006493962 Bacteria 8825450
211 649811235 649633069 Bacteria 6962533
212 8001782390 8001781756 Bacteria 9586736
213 8016254785 8016254467 Bacteria 3797036
214 Ga0006562J51391_1059280
215 Ga0070658_10000044
216 Ga0070658_10015917
217 Ga0070683_100002971
218 Ga0070668_100004461
219 Ga0070668_100032112
220 Ga0070710_10010728
221 Ga0070681_10079159
222 Ga0070679_100024476
223 Ga0070684_100071885
224 Ga0070684_100128651
225 Ga0070665_100001076
226 Ga0070665_100161757
227 Ga0068855_100192133
228 Ga0068861_100004238
229 Ga0068858_100000013
230 Ga0068860_100000154
231 Ga0068860_100075373
232 Ga0081538_10021982
233 Ga0081538_10030787
234 Ga0081540_1041847
235 Ga0081539_10000837
236 Ga0081539_10002403
237 Ga0075369_10035711
238 Ga0075428_100000669
239 Ga0075428_100017636
240 Ga0075428_100092598
241 Ga0075430_100002894
242 Ga0075430_100006087
243 Ga0075430_100019282
244 Ga0075431_100000513
245 Ga0075431_100004872
246 Ga0075433_10022024
247 Ga0075429_100007957
248 Ga0114129_10000001
249 Ga0114129_10165866
250 Ga0114129_10177999
251 Ga0157369_10013261
252 Ga0163163_10013251
253 Ga0163163_10063544
254 Ga0163163_10183210
255 Ga0157379_10000006
256 Ga0157379_10018852
257 Ga0207692_10025224
258 Ga0207680_10017383
259 Ga0207700_10014200
260 Ga0207706_10005549
261 Ga0207711_10016030
262 Ga0207661_10002214
263 Ga0207661_10008993
264 Ga0207668_10009793
265 Ga0207703_10000009
266 Ga0207703_10035944
267 Ga0207641_10004017
268 Ga0207675_100008678
269 Ga0207428_10000877
270 Ga0268266_10001880
271 Ga0268264_10000210
272 Ga0307517_10054739
273 Ga0307515_10037893
274 Ga0307515_10099614
275 Ga0265338_10041685
276 Ga0307512_10011488
277 Ga0307512_10011645
278 Ga0265340_10003646
279 Ga0307513_10006441
280 Ga0307513_10025426
281 Ga0307509_10003555
282 Ga0307508_10006815
283 Ga0307508_10007256
284 Ga0307514_10116050
285 Ga0316576_10000283
286 Ga0316576_10002028
287 Ga0316576_10017046
288 Ga0307405_10055505
289 Ga0307405_10063113
290 Ga0307406_10033246
291 Ga0307409_100059240
292 Ga0307409_100071833
293 Ga0307409_100090710
294 Ga0307416_100001418
295 Ga0307416_100052488
296 Ga0307415_100022969
297 Ga0307415_100028805
298 Ga0307415_100103149
299 Ga0373956_0002161
300 Ga0373942_0000421
301 Ga0373935_0002839
302 Ga0395899_0009168
303 Ga0395900_0014962
304 Ga0395898_0009359
305 Ga0395901_0025283
306 Ga0395901_0097656
307 Ga0439448_0011961
308 Ga0439454_000360
309 Ga0439463_019354
310 Ga0439460_0000634
311 Ga0439440_0000147
312 Ga0466966_0043439
313 Ga0466963_0059190
314 Ga0495629_0105978
315 Ga0495594_0024930
316 Ga0495594_0061534
317 Ga0495668_0000522
318 Ga0495625_0008957
319 Ga0495635_0102317
320 Ga0495672_0016013
321 Ga0495626_0000127
322 Ga0496108_0000019
323 Ga0496112_0007762
324 Ga0496117_0051856
325 Ga0496119_0016815
326 Ga0496119_0039122
327 Ga0496120_0000623
328 Ga0496122_0002434
329 Ga0496125_0000015
330 Ga0501032_0009462
331 Ga0501032_0012881
332 Ga0501033_0012174
333 Ga0501033_0012570
334 Ga0501033_0026659
335 Ga0501033_0059260
336 Ga0501034_0052108
337 Ga0501034_0100061
338 Ga0501036_0012139
339 Ga0501037_0052621
340 Ga0501038_0103867
341 Ga0501039_0054625
342 Ga0501041_0001836
343 Ga0501043_0153485
344 Ga0501047_0011556
345 Ga0501047_0061261
346 Ga0501047_0081587
347 Ga0501048_0005350
348 Ga0501048_0096317
349 Ga0501070_0004467
350 Ga0501070_0044589
351 Ga0501074_0002477
352 Ga0501075_0002368
353 Ga0501076_0001719
354 Ga0501080_0067309
355 Ga0501035_0009576
356 Ga0501035_0010443
357 Ga0501035_0010823
358 Ga0501044_0026957
359 Ga0501045_0002056
360 nmdc:mga00v17_31135_c1
361 nmdc:mga0yw44_16149_c1
362 nmdc:mga05p37_143054_c1
363 nmdc:mga05p37_823_c1
364 nmdc:mga09592_16_c1
365 nmdc:mga09592_22479_c1
366 nmdc:mga0qj67_16_c1
367 nmdc:mga0qj67_290_c1
368 nmdc:mga0qj67_9209_c1
369 nmdc:mga06r32_308714_c1
370 nmdc:mga06r32_493_c1
371 nmdc:mga06r32_5588_c1
372 nmdc:mga08y16_12512_c1
373 nmdc:mga0a205_17059_c1
374 Ga0500651_0000817
375 Ga0500594_0001081
376 Ga0500600_0042984
377 Ga0501084_0000865
378 Ga0501082_0002007
379 2887445972
380 2501942748
381 2515493787
382 2515722983
383 2515755176
384 2516084024
385 2516087681
386 2537897613
387 2537899354
388 2643874564
389 2644381620
390 2644527490
391 2644665797
392 2644667442
393 2676481410
394 2739607925
395 2753270659
396 2758224510
397 2760621983
398 2785341629
399 2809026818
400 2844856464
401 2848552991
402 2855671615
403 2855679013
404 2855684263
405 2856860498
406 2858875019
407 2861521475
408 2867303955
409 2867313205
410 2867324797
411 2867350180
412 2869067332
413 2869070250
414 2895663420
415 2902586245
416 2919057139
417 2935893241
418 2956941170
419 2974317999
420 2977251899
421 2996227216
422 3001120856
423 3006495359
424 649811235
425 8001782390
426 8016254785

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02786

CPSase_L_D2

Carbamoyl-phosphate synthase L chain, ATP binding domain

123

332

0.99

PF00289

Biotin_carb_N

Biotin carboxylase, N-terminal domain

9

118

0.98

PF00364

Biotin_lipoyl

Biotin-requiring enzyme

532

599

0.97

PF02785

Biotin_carb_C

Biotin carboxylase C-terminal domain

342

454

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5mlk-assembly1.cif.gz_B biotin dependent carboxylase acca3 dimer from mycobacterium tuberculosis (rv3285) 0.9849 2 456
5mlk-assembly1.cif.gz_B biotin dependent carboxylase acca3 dimer from mycobacterium tuberculosis (rv3285) 0.9823 2 456
3jzf-assembly1.cif.gz_A crystal structure of biotin carboxylase from e. coli in complex with benzimidazoles series 0.9741 3 446
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.9726 3 449
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.97 3 449
ID Description Score Start End Superfamily
af_P71538_589_656_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9862 522 588 2.40.50.100
af_A0A2R8PV58_38_157_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9857 16 127 3.40.50.20
5mlkA02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9857 89 456 3.30.470.20
af_A0A0R4IFJ4_1104_1181_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.985 520 588 2.40.50.100
af_Q553S7_647_713_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.984 522 585 2.40.50.100
ID Description Score Start End GO Terms
AF-A0A3B8PC23-F1-model_v4 deleted 0.9953 1 69
AF-A0A6N9Y8D7-F1-model_v4 deleted 0.9938 215 431
AF-A0A7J9W0A8-F1-model_v4 biotin carboxylase (EC 6.3.4.14) 0.993 3 74 GO:0005524
GO:0016874
AF-A0A1F9CS15-F1-model_v4 Lipoyl-binding domain-containing protein 0.9929 521 588
AF-A0A382ZER1-F1-model_v4 Biotin carboxylation domain-containing protein 0.9926 8 109 GO:0005524
GO:0016874

Map