F324590

General Info

Members Datasets Scaffolds Average Seq Length
213 125 426 427

Family's Representative Sequence

Representative Sequence 3300054114|Ga0501084_0109739|Ga0501084_0109739_786_2030
Length 414
Sequence MDILQQADPEVFAAVQGERKRQQTGLEMIASENYTSPAVMAAQGSCLTNKYAEGYPGKRYYGGCELVDVAEQLAIDRAKALFGAEHANVQPHSGAQANMAVFLAALQPGDTILGLDLAHGGHLTHGMRLNFSGKYFKVVSYGVRKDDHRIDFDDLAAKAREHRPKLVIAGASAYPRLFDFAKFAELCKEVGALLMVDMAHIAGLVAAKLHPDPVPHADFVTSTTHKTLRGPRAGFVLTRAQEWSDKVNSAVFPGVQGGPLMHVVAAKAVAFGEASQPAFKQYIAQVLLNAKLLAEELAKAGFRIVSGGTDNHLMLVDVTAKGVTGKQAEHALDAAGITVNKNMIPFDPRKPLDPSGIRIGTPALTTRGMKEPEMRRIAKWITEVLANHTDEATLARVRGGVRELCEQFPAPAEQ

Samples

Sample ID Description Type Environment
1 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
4 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
8 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
9 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
10 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
13 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
14 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
15 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
20 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
27 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
28 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
29 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
30 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
31 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
32 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
33 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
34 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
35 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
36 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
37 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
38 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
39 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
40 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
43 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
44 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
45 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
46 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
47 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
48 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
49 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
50 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
51 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
52 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
53 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
54 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
55 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
56 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
57 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
58 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
59 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
60 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
61 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
62 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
63 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
64 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
65 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
66 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
67 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
68 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
69 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
70 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
71 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
74 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
75 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
76 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
77 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
78 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
79 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
80 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
81 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
82 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
83 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
84 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
85 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
101 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
102 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
107 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
108 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
109 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
110 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
111 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
112 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
113 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
116 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
117 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
118 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
119 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
120 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
121 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
122 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
123 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
124 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
125 2904113452 Paenibacillus paridis py1325 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.06
Metatranscriptomes 0
Isolates 0.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.47
Nodule 0
Rhizoplane 1.88
Rhizosphere 93.9
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501084_0109739 3300054114 Bacteria 2318
2 Ga0070714_100102769 3300005435 Bacteria 2520
3 Ga0070705_100014716 3300005440 Bacteria 4032
4 Ga0070694_100094132 3300005444 Bacteria 2107
5 Ga0070706_100000008 3300005467 Bacteria 225667
6 Ga0070698_100002914 3300005471 Bacteria 18836
7 Ga0070698_100043130 3300005471 Bacteria 4626
8 Ga0068853_100071623 3300005539 Bacteria 3019
9 Ga0070696_100089051 3300005546 Bacteria 2194
10 Ga0081540_1004129 3300005983 Bacteria 11207
11 Ga0070717_10119019 3300006028 Bacteria 2261
12 Ga0075365_10042997 3300006038 Bacteria 2956
13 Ga0075433_10001645 3300006852 Bacteria 16597
14 Ga0075433_10005453 3300006852 Bacteria 9995
15 Ga0075433_10023566 3300006852 Bacteria 5183
16 Ga0075434_100001071 3300006871 Bacteria 22374
17 Ga0075434_100017070 3300006871 Bacteria 6985
18 Ga0075436_100006404 3300006914 Bacteria 8068
19 Ga0075436_100008516 3300006914 Bacteria 7009
20 Ga0075436_100009256 3300006914 Bacteria 6740
21 Ga0075436_100028299 3300006914 Bacteria 3855
22 Ga0075436_100052349 3300006914 Bacteria 2818
23 Ga0097620_100005152 3300006931 Bacteria 13271
24 Ga0075435_100093079 3300007076 Bacteria 2490
25 Ga0111539_10111095 3300009094 Bacteria 3216
26 Ga0114129_10001347 3300009147 Bacteria 32932
27 Ga0114129_10121455 3300009147 Bacteria 3595
28 Ga0114129_10171542 3300009147 Bacteria 2957
29 Ga0114129_10327998 3300009147 Bacteria 2033
30 Ga0213872_10000633 3300021361 Bacteria 26613
31 Ga0207699_10029675 3300025906 Bacteria 3052
32 Ga0207684_10000029 3300025910 Bacteria 305483
33 Ga0207684_10019607 3300025910 Bacteria 5784
34 Ga0207646_10157906 3300025922 Bacteria 2046
35 Ga0207665_10012392 3300025939 Bacteria 5601
36 Ga0207665_10077237 3300025939 Bacteria 2285
37 Ga0207639_10093483 3300026041 Bacteria 2412
38 Ga0209966_1005839 3300027695 Bacteria 2122
39 Ga0265322_10002399 3300028654 Bacteria 5787
40 Ga0265340_10008458 3300031247 Bacteria 5557
41 Ga0265339_10005839 3300031249 Bacteria 8163
42 Ga0265316_10001885 3300031344 Bacteria 22020
43 Ga0316575_10002423 3300031665 Bacteria 6252
44 Ga0316579_10006404 3300031691 Bacteria 4808
45 Ga0316579_10009494 3300031691 Bacteria 4092
46 Ga0316579_10018730 3300031691 Bacteria 3050
47 Ga0265342_10000105 3300031712 Bacteria 94078
48 Ga0265342_10002456 3300031712 Bacteria 15976
49 Ga0316576_10007851 3300031727 Bacteria 6746
50 Ga0316578_10003756 3300031728 Bacteria 7020
51 Ga0307413_10067264 3300031824 Bacteria 2239
52 Ga0307410_10017609 3300031852 Bacteria 4296
53 Ga0307406_10082684 3300031901 Bacteria 2139
54 Ga0307407_10047726 3300031903 Bacteria 2432
55 Ga0307412_10032593 3300031911 Bacteria 3304
56 Ga0307409_100336750 3300031995 Bacteria 1418
57 Ga0307416_100010082 3300032002 Bacteria 6223
58 Ga0307411_10069507 3300032005 Bacteria 2378
59 Ga0307415_100007542 3300032126 Bacteria 5956
60 Ga0307415_100018097 3300032126 Bacteria 4245
61 Ga0307415_100019369 3300032126 Bacteria 4131
62 Ga0316580_10001672 3300032139 Bacteria 5900
63 Ga0316580_10016334 3300032139 Bacteria 2277
64 Ga0373944_0006032 3300035089 Bacteria 3209
65 Ga0373943_0008313 3300035170 Bacteria 4657
66 Ga0316574_0020412 3300035398 Bacteria 3922
67 Ga0373947_0001516 3300035725 Bacteria 14257
68 Ga0373937_0060706 3300036401 Bacteria 3474
69 Ga0316582_0005397 3300036647 Bacteria 6580
70 Ga0316582_0090486 3300036647 Bacteria 2013
71 Ga0316584_0005915 3300036712 Bacteria 8255
72 Ga0395899_0007237 3300037312 Bacteria 8590
73 Ga0395899_0007437 3300037312 Bacteria 8461
74 Ga0395899_0009566 3300037312 Bacteria 7440
75 Ga0395899_0009843 3300037312 Bacteria 7332
76 Ga0395900_0001846 3300037418 Bacteria 24148
77 Ga0395900_0003597 3300037418 Bacteria 16660
78 Ga0395900_0006411 3300037418 Bacteria 12262
79 Ga0395900_0006614 3300037418 Bacteria 12060
80 Ga0395900_0008531 3300037418 Bacteria 10532
81 Ga0395900_0014289 3300037418 Bacteria 8103
82 Ga0395900_0041694 3300037418 Bacteria 4731
83 Ga0395900_0114080 3300037418 Bacteria 2773
84 Ga0395898_0002591 3300037466 Bacteria 21125
85 Ga0395898_0006502 3300037466 Bacteria 12484
86 Ga0395898_0029742 3300037466 Bacteria 5467
87 Ga0395898_0032867 3300037466 Bacteria 5179
88 Ga0395898_0045667 3300037466 Bacteria 4305
89 Ga0395898_0054343 3300037466 Bacteria 3908
90 Ga0395898_0058253 3300037466 Bacteria 3761
91 Ga0395898_0069598 3300037466 Bacteria 3404
92 Ga0395898_0146874 3300037466 Bacteria 2257
93 Ga0395905_0011076 3300037471 Bacteria 8729
94 Ga0395905_0011704 3300037471 Bacteria 8469
95 Ga0395905_0012069 3300037471 Bacteria 8326
96 Ga0395905_0014402 3300037471 Bacteria 7553
97 Ga0395905_0051576 3300037471 Bacteria 3854
98 Ga0395905_0110377 3300037471 Bacteria 2583
99 Ga0395901_0005731 3300038443 Bacteria 12577
100 Ga0395901_0009419 3300038443 Bacteria 9911
101 Ga0395901_0018845 3300038443 Bacteria 7054
102 Ga0395901_0035205 3300038443 Bacteria 5173
103 Ga0395901_0055545 3300038443 Bacteria 4118
104 Ga0395901_0057921 3300038443 Bacteria 4030
105 Ga0395901_0071745 3300038443 Bacteria 3609
106 Ga0395901_0133326 3300038443 Bacteria 2610
107 Ga0395901_0249087 3300038443 Bacteria 1851
108 Ga0400483_100156 3300039062 Bacteria 37225
109 Ga0400483_173151 3300039062 Bacteria 20816
110 Ga0400489_00717 3300039093 Bacteria 1975
111 Ga0400489_29293 3300039093 Bacteria 17763
112 Ga0400489_91225 3300039093 Bacteria 2806
113 Ga0436360_0535170 3300039438 Bacteria 16122
114 Ga0436361_0194695 3300039447 Bacteria 62210
115 Ga0436361_0464815 3300039447 Bacteria 2412
116 Ga0439453_0003771 3300041408 Bacteria 2206
117 Ga0451789_1025447 3300041443 Bacteria 1396
118 Ga0451847_0428779 3300041503 Bacteria 1391
119 Ga0439448_0008193 3300042005 Bacteria 3054
120 Ga0439450_005981 3300042008 Bacteria 2169
121 Ga0451577_0030172 3300042876 Bacteria 4899
122 Ga0453683_0000087 3300044673 Bacteria 138993
123 Ga0466965_0016559 3300044683 Bacteria 3511
124 Ga0466964_0001176 3300044706 Bacteria 8837
125 Ga0453684_0003198 3300044712 Bacteria 37537
126 Ga0453684_0015205 3300044712 Bacteria 12208
127 Ga0453684_0016777 3300044712 Bacteria 11410
128 Ga0453684_0192158 3300044712 Bacteria 2387
129 Ga0466960_0005253 3300044901 Bacteria 5116
130 Ga0466967_0001685 3300045976 Bacteria 13118
131 Ga0466967_0246790 3300045976 Bacteria 1704
132 Ga0495592_0115097 3300046454 Bacteria 1898
133 Ga0495603_0005502 3300046455 Bacteria 7554
134 Ga0495641_0000277 3300046461 Bacteria 40936
135 Ga0495580_0000256 3300046472 Bacteria 42387
136 Ga0495582_0002625 3300046473 Bacteria 10014
137 Ga0495582_0024650 3300046473 Bacteria 3292
138 Ga0495584_0068740 3300046491 Bacteria 1780
139 Ga0495594_0000090 3300046499 Bacteria 41794
140 Ga0495667_0066484 3300046559 Bacteria 2357
141 Ga0495656_0038981 3300046615 Bacteria 1971
142 Ga0495588_0000865 3300046674 Bacteria 13368
143 Ga0495658_0038027 3300046683 Bacteria 2663
144 Ga0495658_0085433 3300046683 Bacteria 1860
145 Ga0495676_0006555 3300047321 Bacteria 10729
146 Ga0496104_0214977 3300048907 Bacteria 1834
147 Ga0496109_0024453 3300048912 Bacteria 5370
148 Ga0496113_0120749 3300048916 Bacteria 2049
149 Ga0501031_0000741 3300049568 Bacteria 19587
150 Ga0501032_0134653 3300049569 Bacteria 1629
151 Ga0501033_0013631 3300049570 Bacteria 6186
152 Ga0501036_0007382 3300049572 Bacteria 8956
153 Ga0501036_0101608 3300049572 Bacteria 2432
154 Ga0501038_0046304 3300049574 Bacteria 3771
155 Ga0501038_0101717 3300049574 Bacteria 2392
156 Ga0501038_0271544 3300049574 Bacteria 1337
157 Ga0501039_0012754 3300049575 Bacteria 6423
158 Ga0501040_0013941 3300049576 Bacteria 5292
159 Ga0501041_0003881 3300049577 Bacteria 8608
160 Ga0501041_0024208 3300049577 Bacteria 3643
161 Ga0501042_0023273 3300049578 Bacteria 4333
162 Ga0501043_0024438 3300049579 Bacteria 4741
163 Ga0501046_0002233 3300049580 Bacteria 18272
164 Ga0501046_0019182 3300049580 Bacteria 5673
165 Ga0501048_0000617 3300049582 Bacteria 25363
166 Ga0501067_0003007 3300049583 Bacteria 9309
167 Ga0501068_0018671 3300049584 Bacteria 4016
168 Ga0501069_0000706 3300049585 Bacteria 15582
169 Ga0501069_0038990 3300049585 Bacteria 2623
170 Ga0501071_0000685 3300049587 Bacteria 17722
171 Ga0501071_0112473 3300049587 Bacteria 2013
172 Ga0501071_0152559 3300049587 Bacteria 1724
173 Ga0501072_0005599 3300049588 Bacteria 9560
174 Ga0501072_0033811 3300049588 Bacteria 4006
175 Ga0501074_0003167 3300049590 Bacteria 11604
176 Ga0501075_0002926 3300049591 Bacteria 11455
177 Ga0501075_0326254 3300049591 Bacteria 1170
178 Ga0501076_0004941 3300049592 Bacteria 9545
179 Ga0501076_0017204 3300049592 Bacteria 5491
180 Ga0501077_0022055 3300049593 Bacteria 4033
181 Ga0501079_0025258 3300049741 Bacteria 4557
182 Ga0501079_0049344 3300049741 Bacteria 3248
183 Ga0501080_0060171 3300049742 Bacteria 3535
184 Ga0501081_0001352 3300049743 Bacteria 14968
185 Ga0501081_0019366 3300049743 Bacteria 4532
186 Ga0501083_0057836 3300049744 Bacteria 2595
187 Ga0501035_0019069 3300049822 Bacteria 6313
188 Ga0501035_0023815 3300049822 Bacteria 5618
189 Ga0501044_0207026 3300049823 Bacteria 1917
190 Ga0501045_0000889 3300049824 Bacteria 19416
191 Ga0501045_0083295 3300049824 Bacteria 2359
192 nmdc:mga05p37_140210_c2 3300050507 Bacteria 2253
193 nmdc:mga05p37_162121_c1 3300050507 Bacteria 2730
194 nmdc:mga05p37_8002_c1 3300050507 Bacteria 12478
195 nmdc:mga0n895_10826_c1 3300050512 Bacteria 8095
196 nmdc:mga0n895_40560_c1 3300050512 Bacteria 4522
197 nmdc:mga0n895_9455_c1 3300050512 Bacteria 8528
198 nmdc:mga0rr50_4770_c1 3300050513 Bacteria 8000
199 nmdc:mga0rr50_77909_c1 3300050513 Bacteria 2549
200 nmdc:mga08x19_12400_c1 3300050514 Bacteria 5135
201 nmdc:mga08x19_35334_c1 3300050514 Bacteria 3161
202 nmdc:mga08x19_4372_c1 3300050514 Bacteria 8380
203 nmdc:mga0a205_10830_c1 3300050515 Bacteria 8390
204 nmdc:mga0a205_111886_c1 3300050515 Bacteria 2630
205 nmdc:mga0a205_40_c1 3300050515 Bacteria 71613
206 nmdc:mga0a205_8732_c1 3300050515 Bacteria 9231
207 Ga0495619_0121253 3300053085 Bacteria 1793
208 Ga0501084_0013409 3300054114 Bacteria 6782
209 Ga0501084_0228591 3300054114 Bacteria 1570
210 Ga0501082_0003225 3300060353 Bacteria 14216
211 Ga0530510_0011499 3300061734 Bacteria 6208
212 2673166566 2671180531 Bacteria 9045424
213 2904117789 2904113452 Bacteria 7796941
214 Ga0501084_0109739
215 Ga0070714_100102769
216 Ga0070705_100014716
217 Ga0070694_100094132
218 Ga0070706_100000008
219 Ga0070698_100002914
220 Ga0070698_100043130
221 Ga0068853_100071623
222 Ga0070696_100089051
223 Ga0081540_1004129
224 Ga0070717_10119019
225 Ga0075365_10042997
226 Ga0075433_10001645
227 Ga0075433_10005453
228 Ga0075433_10023566
229 Ga0075434_100001071
230 Ga0075434_100017070
231 Ga0075436_100006404
232 Ga0075436_100008516
233 Ga0075436_100009256
234 Ga0075436_100028299
235 Ga0075436_100052349
236 Ga0097620_100005152
237 Ga0075435_100093079
238 Ga0111539_10111095
239 Ga0114129_10001347
240 Ga0114129_10121455
241 Ga0114129_10171542
242 Ga0114129_10327998
243 Ga0213872_10000633
244 Ga0207699_10029675
245 Ga0207684_10000029
246 Ga0207684_10019607
247 Ga0207646_10157906
248 Ga0207665_10012392
249 Ga0207665_10077237
250 Ga0207639_10093483
251 Ga0209966_1005839
252 Ga0265322_10002399
253 Ga0265340_10008458
254 Ga0265339_10005839
255 Ga0265316_10001885
256 Ga0316575_10002423
257 Ga0316579_10006404
258 Ga0316579_10009494
259 Ga0316579_10018730
260 Ga0265342_10000105
261 Ga0265342_10002456
262 Ga0316576_10007851
263 Ga0316578_10003756
264 Ga0307413_10067264
265 Ga0307410_10017609
266 Ga0307406_10082684
267 Ga0307407_10047726
268 Ga0307412_10032593
269 Ga0307409_100336750
270 Ga0307416_100010082
271 Ga0307411_10069507
272 Ga0307415_100007542
273 Ga0307415_100018097
274 Ga0307415_100019369
275 Ga0316580_10001672
276 Ga0316580_10016334
277 Ga0373944_0006032
278 Ga0373943_0008313
279 Ga0316574_0020412
280 Ga0373947_0001516
281 Ga0373937_0060706
282 Ga0316582_0005397
283 Ga0316582_0090486
284 Ga0316584_0005915
285 Ga0395899_0007237
286 Ga0395899_0007437
287 Ga0395899_0009566
288 Ga0395899_0009843
289 Ga0395900_0001846
290 Ga0395900_0003597
291 Ga0395900_0006411
292 Ga0395900_0006614
293 Ga0395900_0008531
294 Ga0395900_0014289
295 Ga0395900_0041694
296 Ga0395900_0114080
297 Ga0395898_0002591
298 Ga0395898_0006502
299 Ga0395898_0029742
300 Ga0395898_0032867
301 Ga0395898_0045667
302 Ga0395898_0054343
303 Ga0395898_0058253
304 Ga0395898_0069598
305 Ga0395898_0146874
306 Ga0395905_0011076
307 Ga0395905_0011704
308 Ga0395905_0012069
309 Ga0395905_0014402
310 Ga0395905_0051576
311 Ga0395905_0110377
312 Ga0395901_0005731
313 Ga0395901_0009419
314 Ga0395901_0018845
315 Ga0395901_0035205
316 Ga0395901_0055545
317 Ga0395901_0057921
318 Ga0395901_0071745
319 Ga0395901_0133326
320 Ga0395901_0249087
321 Ga0400483_100156
322 Ga0400483_173151
323 Ga0400489_00717
324 Ga0400489_29293
325 Ga0400489_91225
326 Ga0436360_0535170
327 Ga0436361_0194695
328 Ga0436361_0464815
329 Ga0439453_0003771
330 Ga0451789_1025447
331 Ga0451847_0428779
332 Ga0439448_0008193
333 Ga0439450_005981
334 Ga0451577_0030172
335 Ga0453683_0000087
336 Ga0466965_0016559
337 Ga0466964_0001176
338 Ga0453684_0003198
339 Ga0453684_0015205
340 Ga0453684_0016777
341 Ga0453684_0192158
342 Ga0466960_0005253
343 Ga0466967_0001685
344 Ga0466967_0246790
345 Ga0495592_0115097
346 Ga0495603_0005502
347 Ga0495641_0000277
348 Ga0495580_0000256
349 Ga0495582_0002625
350 Ga0495582_0024650
351 Ga0495584_0068740
352 Ga0495594_0000090
353 Ga0495667_0066484
354 Ga0495656_0038981
355 Ga0495588_0000865
356 Ga0495658_0038027
357 Ga0495658_0085433
358 Ga0495676_0006555
359 Ga0496104_0214977
360 Ga0496109_0024453
361 Ga0496113_0120749
362 Ga0501031_0000741
363 Ga0501032_0134653
364 Ga0501033_0013631
365 Ga0501036_0007382
366 Ga0501036_0101608
367 Ga0501038_0046304
368 Ga0501038_0101717
369 Ga0501038_0271544
370 Ga0501039_0012754
371 Ga0501040_0013941
372 Ga0501041_0003881
373 Ga0501041_0024208
374 Ga0501042_0023273
375 Ga0501043_0024438
376 Ga0501046_0002233
377 Ga0501046_0019182
378 Ga0501048_0000617
379 Ga0501067_0003007
380 Ga0501068_0018671
381 Ga0501069_0000706
382 Ga0501069_0038990
383 Ga0501071_0000685
384 Ga0501071_0112473
385 Ga0501071_0152559
386 Ga0501072_0005599
387 Ga0501072_0033811
388 Ga0501074_0003167
389 Ga0501075_0002926
390 Ga0501075_0326254
391 Ga0501076_0004941
392 Ga0501076_0017204
393 Ga0501077_0022055
394 Ga0501079_0025258
395 Ga0501079_0049344
396 Ga0501080_0060171
397 Ga0501081_0001352
398 Ga0501081_0019366
399 Ga0501083_0057836
400 Ga0501035_0019069
401 Ga0501035_0023815
402 Ga0501044_0207026
403 Ga0501045_0000889
404 Ga0501045_0083295
405 nmdc:mga05p37_140210_c2
406 nmdc:mga05p37_162121_c1
407 nmdc:mga05p37_8002_c1
408 nmdc:mga0n895_10826_c1
409 nmdc:mga0n895_40560_c1
410 nmdc:mga0n895_9455_c1
411 nmdc:mga0rr50_4770_c1
412 nmdc:mga0rr50_77909_c1
413 nmdc:mga08x19_12400_c1
414 nmdc:mga08x19_35334_c1
415 nmdc:mga08x19_4372_c1
416 nmdc:mga0a205_10830_c1
417 nmdc:mga0a205_111886_c1
418 nmdc:mga0a205_40_c1
419 nmdc:mga0a205_8732_c1
420 Ga0495619_0121253
421 Ga0501084_0013409
422 Ga0501084_0228591
423 Ga0501082_0003225
424 Ga0530510_0011499
425 2673166566
426 2904117789

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00464

SHMT

Serine hydroxymethyltransferase

4

381

0.99

PF01212

Beta_elim_lyase

Beta-eliminating lyase

57

344

0.87

PF00155

Aminotran_1_2

Aminotransferase class I and II

30

372

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1yjs-assembly1.cif.gz_A-2 k226q mutant of serine hydroxymethyltransferase from b. stearothermophilus, complex with glycine 0.9897 16 413
2w7f-assembly1.cif.gz_A crystal structure of y51fbsshmt l-ser external aldimine 0.9889 14 413
2vgs-assembly1.cif.gz_A crystal structure of e53qbsshmt internal aldimine 0.9883 16 413
1kkj-assembly1.cif.gz_A crystal structure of serine hydroxymethyltransferase from b.stearothermophilus 0.9881 16 413
2vmu-assembly1.cif.gz_A-2 crystal structure of y60absshmt crystallized in the presence of l- allo-thr 0.9881 16 413
ID Description Score Start End Superfamily
2dkjA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9886 45 293 3.40.640.10
af_Q6NYR0_52_322_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.979 45 290 3.40.640.10
2dkjA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9731 45 293 3.40.640.10
af_Q8I566_36_298_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9611 45 293 3.40.640.10
5vc2B01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9547 48 285 3.40.640.10
ID Description Score Start End GO Terms
AF-X0VC00-F1-model_v4 Serine hydroxymethyltransferase-like domain-containing protein 0.9945 94 350 GO:0004372
GO:0005829
GO:0019264
GO:0030170
GO:0035999
AF-A0A6G2D7F4-F1-model_v4 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.9945 120 229 GO:0004372
GO:0005829
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0046653
AF-M1ZW62-F1-model_v4 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.9933 161 322 GO:0004372
GO:0005829
GO:0006730
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0046653
AF-A0A5A7PTZ0-F1-model_v4 Serine hydroxymethyltransferase 0.9927 153 252 GO:0004372
GO:0005739
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0035999
AF-A0AAK4-F1-model_v4 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.9922 65 223 GO:0004372
GO:0005829
GO:0008168
GO:0019264
GO:0030170
GO:0032259
GO:0046653

Map