F323894

General Info

Members Datasets Scaffolds Average Seq Length
213 130 426 171

Family's Representative Sequence

Representative Sequence 3300006038|Ga0075365_10586388|Ga0075365_105863882
Length 186
Sequence MNLHPTSHVRGVEVSNPMAENPTALMQQLHDEHAAALWGFCLHLTSDPVRAEDVVQETLLRAWQHSEVLDERRGSVRSWLFTVARNIVIDEWRTKRSQNERSTDSLPEPGDPVDQTDTLLQSWVVAEAVTSLSHEHRAVLMECYYRGRSVAEASRRLGIPEGTVKSRTHYALRALRLALEEMGVGR

Samples

Sample ID Description Type Environment
1 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
31 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
32 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
33 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
39 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
42 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
43 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
44 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
47 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
48 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
49 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
50 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
51 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
52 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
53 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
54 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
55 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
56 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
57 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
58 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
59 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
60 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
61 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
62 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
63 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
64 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
65 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
66 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
67 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
68 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
69 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
70 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
71 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
72 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
73 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
74 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
77 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
78 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
79 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
80 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
81 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
82 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
83 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
84 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
85 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
86 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
87 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
90 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
91 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
92 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
93 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
94 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
95 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
96 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
99 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
107 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
108 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
109 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
110 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
111 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
112 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
113 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
114 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
115 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
116 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
117 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
118 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
119 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
120 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
121 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
122 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
123 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
124 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
125 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
126 2643221576 Nocardioides sp. Root614 Isolate Unclassified
127 2643221590 Nocardioides sp. Root682 Isolate Unclassified
128 2643221617 Nocardioides sp. Root79 Isolate Unclassified
129 2643221620 Nocardioides sp. Root240 Isolate Unclassified
130 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.65
Metatranscriptomes 0
Isolates 2.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.7
Nodule 0
Rhizoplane 15.49
Rhizosphere 49.77
Stem 0
Stem Tuber 0
Unclassified 1.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075365_10586388 3300006038 Bacteria 788
2 LJQas_1012161 3300000549 Bacteria 1018
3 Ga0070658_10263231 3300005327 Bacteria 1465
4 Ga0070658_11361942 3300005327 Bacteria 616
5 Ga0070676_10271574 3300005328 Bacteria 1139
6 Ga0070683_100142256 3300005329 Bacteria 2273
7 Ga0070680_101596907 3300005336 Bacteria 565
8 Ga0070682_100671929 3300005337 Bacteria 827
9 Ga0070675_100362119 3300005354 Bacteria 1288
10 Ga0070675_101132878 3300005354 Bacteria 720
11 Ga0070714_100263480 3300005435 Bacteria 1597
12 Ga0068867_101252485 3300005459 Unclassified 683
13 Ga0070684_100188787 3300005535 Bacteria 1875
14 Ga0070684_100270130 3300005535 Bacteria 1556
15 Ga0070672_100522851 3300005543 Bacteria 1028
16 Ga0068854_101012288 3300005578 Bacteria 736
17 Ga0068852_100749296 3300005616 Bacteria 989
18 Ga0068852_100828981 3300005616 Bacteria 940
19 Ga0068864_100378951 3300005618 Bacteria 1340
20 Ga0068860_100006201 3300005843 Bacteria 12022
21 Ga0081455_10006435 3300005937 Bacteria 12590
22 Ga0075365_10003434 3300006038 Bacteria 8157
23 Ga0075365_10005705 3300006038 Bacteria 6751
24 Ga0075365_10007910 3300006038 Bacteria 5991
25 Ga0075365_10068666 3300006038 Bacteria 2381
26 Ga0075365_10098225 3300006038 Bacteria 2003
27 Ga0075365_10159059 3300006038 Bacteria 1573
28 Ga0075365_10174658 3300006038 Bacteria 1500
29 Ga0075365_10263140 3300006038 Bacteria 1213
30 Ga0075365_10275965 3300006038 Bacteria 1182
31 Ga0075365_10663805 3300006038 Bacteria 737
32 Ga0075368_10046549 3300006042 Bacteria 1716
33 Ga0075368_10119304 3300006042 Bacteria 1091
34 Ga0075363_100003030 3300006048 Bacteria 7034
35 Ga0075363_100012561 3300006048 Bacteria 4087
36 Ga0075363_100058852 3300006048 Bacteria 2064
37 Ga0075363_100095372 3300006048 Bacteria 1641
38 Ga0075363_100405765 3300006048 Bacteria 801
39 Ga0075364_10028685 3300006051 Bacteria 3564
40 Ga0075364_10047564 3300006051 Bacteria 2794
41 Ga0075364_10165556 3300006051 Bacteria 1494
42 Ga0075364_10475746 3300006051 Bacteria 854
43 Ga0075364_10600996 3300006051 Bacteria 752
44 Ga0075367_10003941 3300006178 Bacteria 7163
45 Ga0075367_10053078 3300006178 Bacteria 2401
46 Ga0075367_10206630 3300006178 Bacteria 1227
47 Ga0075370_10183630 3300006353 Bacteria 1231
48 Ga0075370_10451331 3300006353 Bacteria 774
49 Ga0105245_10283021 3300009098 Bacteria 1621
50 Ga0105245_10830875 3300009098 Bacteria 963
51 Ga0105247_10464091 3300009101 Bacteria 915
52 Ga0105243_10620347 3300009148 Bacteria 1044
53 Ga0105242_10520394 3300009176 Bacteria 1135
54 Ga0105242_11058770 3300009176 Bacteria 823
55 Ga0105238_10397752 3300009551 Bacteria 1370
56 Ga0105238_11193663 3300009551 Bacteria 785
57 Ga0157369_11433903 3300013105 Bacteria 703
58 Ga0163162_10391321 3300013306 Bacteria 1523
59 Ga0157375_10052542 3300013308 Bacteria 4006
60 Ga0157375_11467742 3300013308 Bacteria 804
61 Ga0157380_10498126 3300014326 Bacteria 1183
62 Ga0157380_12263762 3300014326 Bacteria 608
63 Ga0163161_11041485 3300017792 Bacteria 700
64 Ga0207664_10090145 3300025929 Bacteria 2512
65 Ga0207644_10590560 3300025931 Bacteria 922
66 Ga0207661_10437595 3300025944 Bacteria 1190
67 Ga0207668_10076314 3300025972 Bacteria 2412
68 Ga0207676_11795354 3300026095 Bacteria 612
69 Ga0209813_10077753 3300027866 Bacteria 1091
70 Ga0209813_10105909 3300027866 Bacteria 963
71 Ga0268266_10794572 3300028379 Bacteria 914
72 Ga0268264_10000980 3300028381 Bacteria 29223
73 Ga0307515_10087424 3300028794 Bacteria 3956
74 Ga0307513_10536936 3300031456 Bacteria 883
75 Ga0307413_10403395 3300031824 Bacteria 1072
76 Ga0307413_11312851 3300031824 Bacteria 633
77 Ga0307410_10358749 3300031852 Bacteria 1167
78 Ga0307406_10798632 3300031901 Bacteria 796
79 Ga0307409_100505040 3300031995 Bacteria 1178
80 Ga0307409_101250091 3300031995 Bacteria 767
81 Ga0307416_101972133 3300032002 Unclassified 687
82 Ga0307411_10303363 3300032005 Bacteria 1282
83 Ga0307415_100053540 3300032126 Bacteria 2750
84 Ga0307415_101061085 3300032126 Bacteria 756
85 Ga0307507_10005350 3300033179 Bacteria 21207
86 Ga0307510_10024593 3300033180 Bacteria 6956
87 Ga0373960_0053530 3300035121 Bacteria 1205
88 Ga0395899_0421019 3300037312 Bacteria 880
89 Ga0395900_0296840 3300037418 Bacteria 1603
90 Ga0395898_0679208 3300037466 Bacteria 972
91 Ga0395901_0407125 3300038443 Bacteria 1397
92 Ga0451789_1220305 3300041443 Bacteria 588
93 Ga0451791_0565724 3300041451 Bacteria 1341
94 Ga0451793_0854432 3300041452 Bacteria 592
95 Ga0451797_0455787 3300041453 Bacteria 809
96 Ga0451797_1446132 3300041453 Bacteria 964
97 Ga0451802_1311532 3300041460 Bacteria 760
98 Ga0451837_1242798 3300041494 Bacteria 729
99 Ga0451837_1809426 3300041494 Bacteria 885
100 Ga0451839_1620215 3300041496 Bacteria 571
101 Ga0451853_3537306 3300041512 Bacteria 935
102 Ga0450909_009014 3300042185 Bacteria 1455
103 Ga0466972_0008767 3300044658 Bacteria 5073
104 Ga0466965_0019142 3300044683 Bacteria 3287
105 Ga0466966_0393671 3300044684 Bacteria 832
106 Ga0466961_0063540 3300044693 Bacteria 2346
107 Ga0466961_0204186 3300044693 Bacteria 1221
108 Ga0466963_0051084 3300044694 Bacteria 2739
109 Ga0466963_1011735 3300044694 Bacteria 585
110 Ga0466970_0063264 3300044765 Bacteria 1984
111 Ga0466970_0189130 3300044765 Bacteria 1144
112 Ga0466957_0269230 3300044842 Bacteria 1137
113 Ga0466960_0035607 3300044901 Bacteria 2327
114 Ga0466960_0084557 3300044901 Bacteria 1606
115 Ga0466958_0082019 3300045836 Bacteria 1985
116 Ga0466958_0350127 3300045836 Bacteria 951
117 Ga0466967_0019815 3300045976 Bacteria 5420
118 Ga0466967_0241347 3300045976 Bacteria 1724
119 Ga0466967_0715020 3300045976 Bacteria 992
120 Ga0466967_1378107 3300045976 Bacteria 702
121 Ga0495629_0376154 3300046459 Bacteria 967
122 Ga0495641_0297992 3300046461 Bacteria 727
123 Ga0495653_0599709 3300046463 Bacteria 677
124 Ga0495662_0360919 3300046476 Bacteria 714
125 Ga0495640_0270188 3300046533 Bacteria 1061
126 Ga0495587_0436071 3300046536 Bacteria 726
127 Ga0495667_0426221 3300046559 Bacteria 835
128 Ga0495635_0141541 3300046663 Bacteria 1638
129 Ga0495674_0646467 3300047319 Bacteria 834
130 Ga0495593_0203188 3300047673 Bacteria 996
131 Ga0496100_0289852 3300048903 Bacteria 1223
132 Ga0496101_0349347 3300048904 Bacteria 1162
133 Ga0496102_0369021 3300048905 Bacteria 1351
134 Ga0496102_0518287 3300048905 Bacteria 1115
135 Ga0496103_0290022 3300048906 Bacteria 1053
136 Ga0496104_0240097 3300048907 Bacteria 1724
137 Ga0496105_0284277 3300048908 Bacteria 1333
138 Ga0496107_0427522 3300048910 Bacteria 985
139 Ga0496107_0437411 3300048910 Bacteria 972
140 Ga0496108_0107331 3300048911 Bacteria 2384
141 Ga0496109_0119286 3300048912 Bacteria 2456
142 Ga0496109_0617486 3300048912 Bacteria 1020
143 Ga0496109_0727110 3300048912 Bacteria 930
144 Ga0496109_1183780 3300048912 Bacteria 701
145 Ga0496110_0335470 3300048913 Bacteria 1377
146 Ga0496110_0585262 3300048913 Bacteria 1013
147 Ga0496110_1233475 3300048913 Bacteria 657
148 Ga0496111_0181288 3300048914 Bacteria 1565
149 Ga0496111_0415793 3300048914 Bacteria 993
150 Ga0496112_0084467 3300048915 Bacteria 3140
151 Ga0496112_1061656 3300048915 Bacteria 729
152 Ga0496113_0078749 3300048916 Bacteria 2522
153 Ga0496114_0033873 3300048917 Bacteria 4211
154 Ga0496114_0080362 3300048917 Unclassified 2753
155 Ga0496114_1204069 3300048917 Bacteria 643
156 Ga0496115_0067442 3300048918 Bacteria 2894
157 Ga0496115_0574390 3300048918 Bacteria 899
158 Ga0496119_0019121 3300048922 Bacteria 5062
159 Ga0496120_0204753 3300048923 Bacteria 953
160 Ga0501034_0203846 3300049571 Bacteria 1935
161 Ga0501036_0764392 3300049572 Bacteria 797
162 Ga0501039_0248761 3300049575 Bacteria 1398
163 Ga0501039_0263944 3300049575 Bacteria 1353
164 Ga0501067_0258008 3300049583 Bacteria 970
165 Ga0501067_0281213 3300049583 Bacteria 926
166 Ga0501068_0295277 3300049584 Bacteria 1037
167 Ga0501068_0565751 3300049584 Bacteria 740
168 Ga0501069_0139257 3300049585 Bacteria 1392
169 Ga0501069_0297897 3300049585 Bacteria 945
170 Ga0501070_0386378 3300049586 Bacteria 1133
171 Ga0501070_0687090 3300049586 Bacteria 810
172 Ga0501072_0149842 3300049588 Bacteria 1860
173 Ga0501074_0629376 3300049590 Bacteria 758
174 Ga0501075_0328773 3300049591 Bacteria 1165
175 Ga0501076_0233425 3300049592 Bacteria 1504
176 Ga0501080_0778283 3300049742 Bacteria 840
177 nmdc:mga03n38_103280_c1 3300050490 Bacteria 1378
178 nmdc:mga03n38_114704_c1 3300050490 Bacteria 1317
179 nmdc:mga03n38_171024_c1 3300050490 Bacteria 1107
180 nmdc:mga00v17_105144_c1 3300050491 Bacteria 1786
181 nmdc:mga00v17_35355_c1 3300050491 Bacteria 2972
182 nmdc:mga00v17_37429_c1 3300050491 Bacteria 2897
183 nmdc:mga00v17_58992_c1 3300050491 Bacteria 2353
184 nmdc:mga0yw44_10152_c1 3300050492 Bacteria 4798
185 nmdc:mga0yw44_128912_c1 3300050492 Bacteria 1636
186 nmdc:mga0yw44_181904_c1 3300050492 Bacteria 1384
187 nmdc:mga0yw44_20153_c1 3300050492 Bacteria 3695
188 nmdc:mga0yw44_2145_c1 3300050492 Bacteria 8279
189 nmdc:mga0yw44_22271_c1 3300050492 Bacteria 3551
190 nmdc:mga0yw44_276285_c1 3300050492 Bacteria 1122
191 nmdc:mga0yw44_296417_c1 3300050492 Bacteria 1083
192 nmdc:mga0yw44_380608_c1 3300050492 Bacteria 953
193 nmdc:mga0yw44_634484_c1 3300050492 Bacteria 726
194 nmdc:mga0yw44_87175_c1 3300050492 Bacteria 1967
195 nmdc:mga06z11_433971_c1 3300050494 Bacteria 793
196 nmdc:mga06z11_46966_c1 3300050494 Bacteria 2191
197 nmdc:mga06z11_81249_c2 3300050494 Bacteria 533
198 nmdc:mga04h51_190710_c1 3300050495 Bacteria 801
199 nmdc:mga04h51_190863_c1 3300050495 Bacteria 801
200 nmdc:mga04h51_92448_c1 3300050495 Bacteria 1091
201 nmdc:mga07m45_505378_c1 3300050496 Bacteria 700
202 nmdc:mga07m45_59544_c1 3300050496 Bacteria 2161
203 nmdc:mga07m45_79531_c1 3300050496 Bacteria 1871
204 Ga0495595_0442081 3300053084 Bacteria 661
205 Ga0495619_0415761 3300053085 Bacteria 928
206 Ga0500554_008265 3300053102 Bacteria 2438
207 Ga0500616_0000305 3300053153 Bacteria 70598
208 Ga0530510_0617119 3300061734 Bacteria 825
209 2643892045 2643221576 Bacteria 5214352
210 2643961097 2643221590 Bacteria 5214697
211 2644099699 2643221617 Bacteria 5139111
212 2644116585 2643221620 Bacteria 5134593
213 2812331491 2811994874 Bacteria 5367947
214 Ga0075365_10586388
215 LJQas_1012161
216 Ga0070658_10263231
217 Ga0070658_11361942
218 Ga0070676_10271574
219 Ga0070683_100142256
220 Ga0070680_101596907
221 Ga0070682_100671929
222 Ga0070675_100362119
223 Ga0070675_101132878
224 Ga0070714_100263480
225 Ga0068867_101252485
226 Ga0070684_100188787
227 Ga0070684_100270130
228 Ga0070672_100522851
229 Ga0068854_101012288
230 Ga0068852_100749296
231 Ga0068852_100828981
232 Ga0068864_100378951
233 Ga0068860_100006201
234 Ga0081455_10006435
235 Ga0075365_10003434
236 Ga0075365_10005705
237 Ga0075365_10007910
238 Ga0075365_10068666
239 Ga0075365_10098225
240 Ga0075365_10159059
241 Ga0075365_10174658
242 Ga0075365_10263140
243 Ga0075365_10275965
244 Ga0075365_10663805
245 Ga0075368_10046549
246 Ga0075368_10119304
247 Ga0075363_100003030
248 Ga0075363_100012561
249 Ga0075363_100058852
250 Ga0075363_100095372
251 Ga0075363_100405765
252 Ga0075364_10028685
253 Ga0075364_10047564
254 Ga0075364_10165556
255 Ga0075364_10475746
256 Ga0075364_10600996
257 Ga0075367_10003941
258 Ga0075367_10053078
259 Ga0075367_10206630
260 Ga0075370_10183630
261 Ga0075370_10451331
262 Ga0105245_10283021
263 Ga0105245_10830875
264 Ga0105247_10464091
265 Ga0105243_10620347
266 Ga0105242_10520394
267 Ga0105242_11058770
268 Ga0105238_10397752
269 Ga0105238_11193663
270 Ga0157369_11433903
271 Ga0163162_10391321
272 Ga0157375_10052542
273 Ga0157375_11467742
274 Ga0157380_10498126
275 Ga0157380_12263762
276 Ga0163161_11041485
277 Ga0207664_10090145
278 Ga0207644_10590560
279 Ga0207661_10437595
280 Ga0207668_10076314
281 Ga0207676_11795354
282 Ga0209813_10077753
283 Ga0209813_10105909
284 Ga0268266_10794572
285 Ga0268264_10000980
286 Ga0307515_10087424
287 Ga0307513_10536936
288 Ga0307413_10403395
289 Ga0307413_11312851
290 Ga0307410_10358749
291 Ga0307406_10798632
292 Ga0307409_100505040
293 Ga0307409_101250091
294 Ga0307416_101972133
295 Ga0307411_10303363
296 Ga0307415_100053540
297 Ga0307415_101061085
298 Ga0307507_10005350
299 Ga0307510_10024593
300 Ga0373960_0053530
301 Ga0395899_0421019
302 Ga0395900_0296840
303 Ga0395898_0679208
304 Ga0395901_0407125
305 Ga0451789_1220305
306 Ga0451791_0565724
307 Ga0451793_0854432
308 Ga0451797_0455787
309 Ga0451797_1446132
310 Ga0451802_1311532
311 Ga0451837_1242798
312 Ga0451837_1809426
313 Ga0451839_1620215
314 Ga0451853_3537306
315 Ga0450909_009014
316 Ga0466972_0008767
317 Ga0466965_0019142
318 Ga0466966_0393671
319 Ga0466961_0063540
320 Ga0466961_0204186
321 Ga0466963_0051084
322 Ga0466963_1011735
323 Ga0466970_0063264
324 Ga0466970_0189130
325 Ga0466957_0269230
326 Ga0466960_0035607
327 Ga0466960_0084557
328 Ga0466958_0082019
329 Ga0466958_0350127
330 Ga0466967_0019815
331 Ga0466967_0241347
332 Ga0466967_0715020
333 Ga0466967_1378107
334 Ga0495629_0376154
335 Ga0495641_0297992
336 Ga0495653_0599709
337 Ga0495662_0360919
338 Ga0495640_0270188
339 Ga0495587_0436071
340 Ga0495667_0426221
341 Ga0495635_0141541
342 Ga0495674_0646467
343 Ga0495593_0203188
344 Ga0496100_0289852
345 Ga0496101_0349347
346 Ga0496102_0369021
347 Ga0496102_0518287
348 Ga0496103_0290022
349 Ga0496104_0240097
350 Ga0496105_0284277
351 Ga0496107_0427522
352 Ga0496107_0437411
353 Ga0496108_0107331
354 Ga0496109_0119286
355 Ga0496109_0617486
356 Ga0496109_0727110
357 Ga0496109_1183780
358 Ga0496110_0335470
359 Ga0496110_0585262
360 Ga0496110_1233475
361 Ga0496111_0181288
362 Ga0496111_0415793
363 Ga0496112_0084467
364 Ga0496112_1061656
365 Ga0496113_0078749
366 Ga0496114_0033873
367 Ga0496114_0080362
368 Ga0496114_1204069
369 Ga0496115_0067442
370 Ga0496115_0574390
371 Ga0496119_0019121
372 Ga0496120_0204753
373 Ga0501034_0203846
374 Ga0501036_0764392
375 Ga0501039_0248761
376 Ga0501039_0263944
377 Ga0501067_0258008
378 Ga0501067_0281213
379 Ga0501068_0295277
380 Ga0501068_0565751
381 Ga0501069_0139257
382 Ga0501069_0297897
383 Ga0501070_0386378
384 Ga0501070_0687090
385 Ga0501072_0149842
386 Ga0501074_0629376
387 Ga0501075_0328773
388 Ga0501076_0233425
389 Ga0501080_0778283
390 nmdc:mga03n38_103280_c1
391 nmdc:mga03n38_114704_c1
392 nmdc:mga03n38_171024_c1
393 nmdc:mga00v17_105144_c1
394 nmdc:mga00v17_35355_c1
395 nmdc:mga00v17_37429_c1
396 nmdc:mga00v17_58992_c1
397 nmdc:mga0yw44_10152_c1
398 nmdc:mga0yw44_128912_c1
399 nmdc:mga0yw44_181904_c1
400 nmdc:mga0yw44_20153_c1
401 nmdc:mga0yw44_2145_c1
402 nmdc:mga0yw44_22271_c1
403 nmdc:mga0yw44_276285_c1
404 nmdc:mga0yw44_296417_c1
405 nmdc:mga0yw44_380608_c1
406 nmdc:mga0yw44_634484_c1
407 nmdc:mga0yw44_87175_c1
408 nmdc:mga06z11_433971_c1
409 nmdc:mga06z11_46966_c1
410 nmdc:mga06z11_81249_c2
411 nmdc:mga04h51_190710_c1
412 nmdc:mga04h51_190863_c1
413 nmdc:mga04h51_92448_c1
414 nmdc:mga07m45_505378_c1
415 nmdc:mga07m45_59544_c1
416 nmdc:mga07m45_79531_c1
417 Ga0495595_0442081
418 Ga0495619_0415761
419 Ga0500554_008265
420 Ga0500616_0000305
421 Ga0530510_0617119
422 2643892045
423 2643961097
424 2644099699
425 2644116585
426 2812331491

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

29

98

0.96

PF04545

Sigma70_r4

Sigma-70, region 4

128

177

0.96

PF08281

Sigma70_r4_2

Sigma-70, region 4

123

175

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.9383 98 170
6jhe-assembly1.cif.gz_A crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna 0.9379 115 163
3hug-assembly6.cif.gz_M crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.9325 98 170
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.9263 98 170
3hug-assembly6.cif.gz_M crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.909 98 170
ID Description Score Start End Superfamily
3hugK00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9544 103 170 1.10.10.10
3hugG00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9224 98 170 1.10.10.10
3hugO00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9215 98 170 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9119 106 163 1.10.10.10
3hugO00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9098 98 170 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0Q6FPX9-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.642 1 163 GO:0003677
GO:0006352
GO:0016020
GO:0016987
AF-A0A535E0C7-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.6323 9 167 GO:0003677
GO:0004518
GO:0006352
GO:0016987
AF-A0A0Q6FPX9-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.6152 1 163 GO:0003677
GO:0006352
GO:0016020
GO:0016987
AF-A0A3R9EQL0-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.6071 7 165 GO:0006352
GO:0016987
AF-A0A535E0C7-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.5846 9 167 GO:0003677
GO:0004518
GO:0006352
GO:0016987

Map