F319421

General Info

Members Datasets Scaffolds Average Seq Length
209 166 174 325

Family's Representative Sequence

Representative Sequence 3300044683|Ga0466965_0049347|Ga0466965_0049347_400_1500
Length 366
Sequence LTQAVPDRDPRDHARHRDEGEDVTDQATETTVHDVVIVGSGPAGYTAAVYAARAGLAPVVLAGSVTAGGALMNTTEVENFPGFPEAVMGPDLMDKMREQAEKFGAQVVWDDAEQVELTGDVKTIVTGNGDTYRARAVILATGSAYRELGLPDEKRLSGRGVSWCATCDGFFFREQNIAVVGGGDSAMEEATFLTRFASKVTVLHRRDSLRASKIMAERALANPKIEFAWNSEVVGITGENKVESLTVRDTVTGATREMPATGLFVAIGHEPRTDLVKGQVDLDDEGYILVQGRSTRTNLPGVFACGDAVDHTYRQAITAAGSGCSAALDAQAYLTVLADAAGEADMAGTPSVPNPEGLPAALEQVG

Samples

Sample ID Description Type Environment
1 2643221613 Oerskovia sp. Root22 Isolate Unclassified
2 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
3 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
4 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
5 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
6 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
7 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
8 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
9 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
10 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
11 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
12 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
13 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
14 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
15 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
16 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
17 2808606394 Promicromonospora sp. C35 Isolate Unclassified
18 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
19 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
20 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
21 2893684298 Kocuria palustris DSM 11925 Isolate Rhizosphere
22 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
23 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
24 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
25 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
26 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
27 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
28 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
29 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
30 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
31 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
32 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
33 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
34 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
36 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
37 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
38 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
39 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
40 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
41 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
42 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
43 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
44 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
45 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
46 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
47 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
48 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
49 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
50 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
51 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
52 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
53 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
54 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
55 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
56 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
57 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
58 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
59 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
60 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
61 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
62 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
63 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
64 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
65 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
66 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
67 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
68 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
69 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
70 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
71 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
72 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
73 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
74 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
75 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
76 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
77 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
78 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
79 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
80 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
81 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
100 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
101 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
102 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
103 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
104 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
105 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
106 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
107 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
108 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
109 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
110 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
111 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
112 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
113 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
114 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
115 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
116 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
117 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
118 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
119 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
120 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
121 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
122 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
123 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
124 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
125 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
126 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
127 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
128 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
129 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
130 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
131 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
132 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
133 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
134 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
135 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
136 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
137 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
138 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
139 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
140 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
141 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
142 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
143 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
144 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
145 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
146 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
147 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
148 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
149 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
150 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
151 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
152 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
153 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
155 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
156 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
157 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
158 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
159 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
160 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
161 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
162 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
163 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
164 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
165 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere
166 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.47
Metatranscriptomes 4.78
Isolates 16.75

Biome Distribution

Category Percentage (%)
Aerial Root 0.48
Bulb 0
Endosphere 2.87
Nodule 0
Rhizoplane 15.79
Rhizosphere 66.51
Stem 0
Stem Tuber 0
Unclassified 14.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24738J21930_10021781 3300002075 Bacteria 1328
2 JGI25406J46586_10017611 3300003203 Bacteria 2950
3 Ga0007423J48922_100374 3300003285 Bacteria 6760
4 Ga0007423J48922_100376 3300003285 Bacteria 1670
5 Ga0070658_10000380 3300005327 Bacteria 38742
6 Ga0070658_10140252 3300005327 Bacteria 2019
7 Ga0070683_100075407 3300005329 Bacteria 3151
8 Ga0070683_100178018 3300005329 Bacteria 2019
9 Ga0070673_100040630 3300005364 Bacteria 3570
10 Ga0070701_10013100 3300005438 Bacteria 3762
11 Ga0070700_100003127 3300005441 Bacteria 8503
12 Ga0068867_100007670 3300005459 Bacteria 7636
13 Ga0070685_10015652 3300005466 Bacteria 4031
14 Ga0070706_100000761 3300005467 Bacteria 36053
15 Ga0070706_100026643 3300005467 Bacteria 5318
16 Ga0070706_100267055 3300005467 Bacteria 1597
17 Ga0070707_100003742 3300005468 Bacteria 14356
18 Ga0070707_100005014 3300005468 Bacteria 12403
19 Ga0070707_100064471 3300005468 Bacteria 3518
20 Ga0070698_100002421 3300005471 Bacteria 20553
21 Ga0070698_100045201 3300005471 Bacteria 4508
22 Ga0070684_100122346 3300005535 Bacteria 2341
23 Ga0070672_100011435 3300005543 Bacteria 6190
24 Ga0068855_100268489 3300005563 Bacteria 1898
25 Ga0068857_100584179 3300005577 Bacteria 1055
26 Ga0068854_100010445 3300005578 Bacteria 6021
27 Ga0068852_100004510 3300005616 Bacteria 9848
28 Ga0068866_10040767 3300005718 Bacteria 2300
29 Ga0068861_100003671 3300005719 Bacteria 10240
30 Ga0068870_10040543 3300005840 Bacteria 2415
31 Ga0075365_10012524 3300006038 Bacteria 5042
32 Ga0075363_100076796 3300006048 Bacteria 1822
33 Ga0075370_10006000 3300006353 Bacteria 6085
34 Ga0075428_100250135 3300006844 Bacteria 1910
35 Ga0075430_100074462 3300006846 Bacteria 2847
36 Ga0075431_100000813 3300006847 Bacteria 27309
37 Ga0075429_100004491 3300006880 Bacteria 12001
38 Ga0068865_100008871 3300006881 Bacteria 6219
39 Ga0111539_10043868 3300009094 Bacteria 5359
40 Ga0105245_10011376 3300009098 Bacteria 7749
41 Ga0105245_10484873 3300009098 Bacteria 1250
42 Ga0114129_10000754 3300009147 Bacteria 41193
43 Ga0105243_10001673 3300009148 Bacteria 19178
44 Ga0105243_10086942 3300009148 Bacteria 2565
45 Ga0105248_10075906 3300009177 Bacteria 3778
46 Ga0105248_10082129 3300009177 Bacteria 3623
47 Ga0105248_10725146 3300009177 Bacteria 1122
48 Ga0105237_10214967 3300009545 Bacteria 1923
49 Ga0105249_10013394 3300009553 Bacteria 7242
50 Ga0105239_10016042 3300010375 Bacteria 8290
51 Ga0157370_10146234 3300013104 Bacteria 2201
52 Ga0157372_10066507 3300013307 Bacteria 4049
53 Ga0157375_10248720 3300013308 Bacteria 1938
54 Ga0157380_10007376 3300014326 Bacteria 7807
55 Ga0197907_10211698 3300020069 Bacteria 3215
56 Ga0206355_1705656 3300020076 Bacteria 2004
57 Ga0206351_10485603 3300020077 Bacteria 1087
58 Ga0206354_11002301 3300020081 Bacteria 1436
59 Ga0206353_10002063 3300020082 Bacteria 4225
60 Ga0224712_10004796 3300022467 Bacteria 3689
61 Ga0207642_10122704 3300025899 Bacteria 1343
62 Ga0207688_10088257 3300025901 Bacteria 1778
63 Ga0207647_10015966 3300025904 Bacteria 5133
64 Ga0207643_10023437 3300025908 Bacteria 3403
65 Ga0207705_10101255 3300025909 Bacteria 2119
66 Ga0207684_10001414 3300025910 Bacteria 25976
67 Ga0207684_10030982 3300025910 Bacteria 4552
68 Ga0207684_10151771 3300025910 Bacteria 1993
69 Ga0207707_10152730 3300025912 Bacteria 2019
70 Ga0207646_10013331 3300025922 Bacteria 7863
71 Ga0207646_10024256 3300025922 Bacteria 5558
72 Ga0207646_10054945 3300025922 Bacteria 3561
73 Ga0207646_10073622 3300025922 Bacteria 3051
74 Ga0207709_10013249 3300025935 Bacteria 4548
75 Ga0207709_10174918 3300025935 Bacteria 1510
76 Ga0207670_10055858 3300025936 Bacteria 2670
77 Ga0207669_10004166 3300025937 Bacteria 6338
78 Ga0207704_10054152 3300025938 Bacteria 2444
79 Ga0207704_10074519 3300025938 Bacteria 2166
80 Ga0207691_10061679 3300025940 Bacteria 3405
81 Ga0207661_10032421 3300025944 Bacteria 4047
82 Ga0207661_10189291 3300025944 Bacteria 1803
83 Ga0207667_10353396 3300025949 Bacteria 1499
84 Ga0207708_10000836 3300026075 Bacteria 23216
85 Ga0207648_10000921 3300026089 Bacteria 33155
86 Ga0207675_100002314 3300026118 Bacteria 18926
87 Ga0265334_10017388 3300028573 Bacteria 2971
88 Ga0265338_10000006 3300028800 Bacteria 570804
89 Ga0265332_10017127 3300031238 Bacteria 3197
90 Ga0265325_10000023 3300031241 Bacteria 116475
91 Ga0265340_10007098 3300031247 Bacteria 6107
92 Ga0307513_10000175 3300031456 Bacteria 92151
93 Ga0265313_10004021 3300031595 Bacteria 11505
94 Ga0316575_10013048 3300031665 Bacteria 3100
95 Ga0265314_10123086 3300031711 Bacteria 1629
96 Ga0265342_10091456 3300031712 Bacteria 1743
97 Ga0316576_10020677 3300031727 Bacteria 4539
98 Ga0307410_10154107 3300031852 Bacteria 1714
99 Ga0307411_10275702 3300032005 Bacteria 1336
100 Ga0316596_1027527 3300033541 Bacteria 1467
101 Ga0316574_0012618 3300035398 Bacteria 4838
102 Ga0400488_18342 3300038741 Bacteria 12264
103 Ga0436365_0629646 3300039437 Bacteria 4429
104 Ga0451789_0677944 3300041443 Bacteria 2178
105 Ga0451833_1013256 3300041491 Bacteria 1661
106 Ga0451837_1401472 3300041494 Bacteria 3922
107 Ga0466969_0038202 3300044656 Bacteria 2417
108 Ga0466965_0049347 3300044683 Bacteria 2086
109 Ga0466961_0004435 3300044693 Bacteria 8790
110 Ga0466968_0037696 3300044735 Bacteria 2029
111 Ga0466970_0033105 3300044765 Bacteria 2732
112 Ga0466960_0054456 3300044901 Bacteria 1942
113 Ga0466960_0274720 3300044901 Bacteria 943
114 Ga0466967_0006140 3300045976 Bacteria 8456
115 Ga0466967_0017569 3300045976 Bacteria 5685
116 Ga0466967_0563663 3300045976 Bacteria 1122
117 Ga0495627_041997 3300046453 Bacteria 1403
118 Ga0495592_0117397 3300046454 Bacteria 1876
119 Ga0495585_0035061 3300046492 Bacteria 2838
120 Ga0495609_0001786 3300046538 Bacteria 13798
121 Ga0495680_0177765 3300047322 Bacteria 1538
122 Ga0496100_0058699 3300048903 Bacteria 2526
123 Ga0496100_0244714 3300048903 Bacteria 1325
124 Ga0496101_0114662 3300048904 Bacteria 2032
125 Ga0496101_0156019 3300048904 Bacteria 1748
126 Ga0496102_0002476 3300048905 Bacteria 15768
127 Ga0496102_0149963 3300048905 Bacteria 2190
128 Ga0496102_0280445 3300048905 Bacteria 1571
129 Ga0496103_0015344 3300048906 Bacteria 4557
130 Ga0496104_0003650 3300048907 Bacteria 13292
131 Ga0496104_0239892 3300048907 Bacteria 1725
132 Ga0496105_0017964 3300048908 Bacteria 5676
133 Ga0496105_0146587 3300048908 Bacteria 1941
134 Ga0496107_0221598 3300048910 Bacteria 1407
135 Ga0496108_0013749 3300048911 Bacteria 6603
136 Ga0496108_0359088 3300048911 Bacteria 1271
137 Ga0496109_0017934 3300048912 Bacteria 6214
138 Ga0496109_0158634 3300048912 Bacteria 2119
139 Ga0496109_0311750 3300048912 Bacteria 1484
140 Ga0496109_0333538 3300048912 Bacteria 1432
141 Ga0496109_0450686 3300048912 Bacteria 1215
142 Ga0496110_0109732 3300048913 Bacteria 2478
143 Ga0496111_0021103 3300048914 Bacteria 4544
144 Ga0496111_0091637 3300048914 Bacteria 2227
145 Ga0496111_0102989 3300048914 Bacteria 2099
146 Ga0496111_0269147 3300048914 Bacteria 1264
147 Ga0496112_0249352 3300048915 Bacteria 1727
148 Ga0496114_0019962 3300048917 Bacteria 5436
149 Ga0496114_0063813 3300048917 Bacteria 3084
150 Ga0496114_0072032 3300048917 Bacteria 2905
151 Ga0496114_0144827 3300048917 Bacteria 2059
152 Ga0496114_0316595 3300048917 Bacteria 1378
153 Ga0496115_0022868 3300048918 Bacteria 4848
154 Ga0496117_0001906 3300048920 Bacteria 27989
155 Ga0496118_0000985 3300048921 Bacteria 44347
156 Ga0496119_0013725 3300048922 Bacteria 6420
157 Ga0496120_0102832 3300048923 Bacteria 1506
158 Ga0496122_0143157 3300048925 Bacteria 1491
159 Ga0496124_0000090 3300048927 Bacteria 192095
160 Ga0496124_0075415 3300048927 Bacteria 2786
161 Ga0496126_0014280 3300048929 Bacteria 8035
162 Ga0501308_008479 3300049128 Bacteria 1101
163 Ga0501047_0159050 3300049581 Bacteria 2131
164 Ga0501080_0212658 3300049742 Bacteria 1772
165 Ga0501044_0006508 3300049823 Bacteria 12905
166 nmdc:mga00v17_1107_c1 3300050491 Bacteria 14172
167 nmdc:mga0yw44_22756_c1 3300050492 Bacteria 3519
168 nmdc:mga07m45_9446_c1 3300050496 Bacteria 5062
169 nmdc:mga05p37_1763_c1 3300050507 Bacteria 25281
170 nmdc:mga09592_5768_c1 3300050508 Bacteria 10095
171 nmdc:mga0qj67_7241_c1 3300050509 Bacteria 8196
172 nmdc:mga06r32_20821_c1 3300050510 Bacteria 6044
173 nmdc:mga08y16_68442_c1 3300050511 Bacteria 3702
174 Ga0495595_0008839 3300053084 Bacteria 4148

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048904 Ga0496101_0156019 Ga0496101_0156019_23_856 259
2 3300044901 Ga0466960_0274720 Ga0466960_0274720_15_908 275
3 3300048903 Ga0496100_0058699 Ga0496100_0058699_1610_2491 275
4 3300013104 Ga0157370_10146234 Ga0157370_101462343 285
5 3300005327 Ga0070658_10000380 Ga0070658_1000038029 292
6 3300048903 Ga0496100_0244714 Ga0496100_0244714_118_1116 292
7 3300048905 Ga0496102_0149963 Ga0496102_0149963_580_1578 292
8 3300048905 Ga0496102_0280445 Ga0496102_0280445_250_1167 293
9 3300013308 Ga0157375_10248720 Ga0157375_102487203 295
10 3300028573 Ga0265334_10017388 Ga0265334_100173882 296
11 3300028800 Ga0265338_10000006 Ga0265338_10000006322 296
12 3300031238 Ga0265332_10017127 Ga0265332_100171273 296
13 3300031241 Ga0265325_10000023 Ga0265325_1000002392 296
14 3300031595 Ga0265313_10004021 Ga0265313_100040219 296
15 3300031711 Ga0265314_10123086 Ga0265314_101230861 296
16 3300031712 Ga0265342_10091456 Ga0265342_100914561 296
17 iso_pu_bacteria 2643221613 2644083465 297
18 3300041494 Ga0451837_1401472 Ga0451837_1401472_2912_3883 298
19 3300048920 Ga0496117_0001906 Ga0496117_0001906_11468_12451 298
20 3300048921 Ga0496118_0000985 Ga0496118_0000985_27845_28828 298
21 3300048922 Ga0496119_0013725 Ga0496119_0013725_5069_6052 298
22 3300048923 Ga0496120_0102832 Ga0496120_0102832_389_1372 298
23 3300048925 Ga0496122_0143157 Ga0496122_0143157_415_1398 298
24 3300048927 Ga0496124_0000090 Ga0496124_0000090_181328_182311 298
25 3300050491 nmdc:mga00v17_1107_c1 nmdc:mga00v17_1107_c1_402_1385 300
26 3300005467 Ga0070706_100267055 Ga0070706_1002670552 303
27 3300031247 Ga0265340_10007098 Ga0265340_100070981 303
28 iso_pu_bacteria 2751185788 2753304198 303
29 3300005467 Ga0070706_100000761 Ga0070706_1000007613 304
30 3300005577 Ga0068857_100584179 Ga0068857_1005841791 304
31 3300006048 Ga0075363_100076796 Ga0075363_1000767962 304
32 3300006353 Ga0075370_10006000 Ga0075370_100060005 304
33 3300025910 Ga0207684_10001414 Ga0207684_1000141413 304
34 3300048927 Ga0496124_0075415 Ga0496124_0075415_260_1240 304
35 3300050496 nmdc:mga07m45_9446_c1 nmdc:mga07m45_9446_c1_508_1455 304
36 3300009177 Ga0105248_10725146 Ga0105248_107251461 306
37 3300039437 Ga0436365_0629646 Ga0436365_0629646_966_1916 306
38 3300009177 Ga0105248_10075906 Ga0105248_100759063 307
39 3300031665 Ga0316575_10013048 Ga0316575_100130481 307
40 3300046538 Ga0495609_0001786 Ga0495609_0001786_917_1843 307
41 3300048917 Ga0496114_0063813 Ga0496114_0063813_1277_2206 307
42 iso_pu_bacteria 8057345674 8057346612 307
43 3300005327 Ga0070658_10140252 Ga0070658_101402522 308
44 3300005563 Ga0068855_100268489 Ga0068855_1002684892 308
45 3300022467 Ga0224712_10004796 Ga0224712_100047965 308
46 3300025904 Ga0207647_10015966 Ga0207647_100159665 308
47 3300025909 Ga0207705_10101255 Ga0207705_101012553 308
48 3300025949 Ga0207667_10353396 Ga0207667_103533962 308
49 3300045976 Ga0466967_0006140 Ga0466967_0006140_5199_6161 308
50 3300046453 Ga0495627_041997 Ga0495627_041997_369_1364 308
51 3300048911 Ga0496108_0013749 Ga0496108_0013749_2130_3092 308
52 3300048912 Ga0496109_0017934 Ga0496109_0017934_3175_4137 308
53 3300048913 Ga0496110_0109732 Ga0496110_0109732_726_1688 308
54 3300048914 Ga0496111_0021103 Ga0496111_0021103_3447_4409 308
55 3300048917 Ga0496114_0316595 Ga0496114_0316595_409_1347 308
56 iso_pu_bacteria 2751185788 2753303947 308
57 iso_pu_bacteria 2928104781 2928105694 308
58 3300031456 Ga0307513_10000175 Ga0307513_1000017529 309
59 3300031727 Ga0316576_10020677 Ga0316576_100206772 309
60 3300035398 Ga0316574_0012618 Ga0316574_0012618_1672_2616 309
61 3300048905 Ga0496102_0002476 Ga0496102_0002476_8882_9856 309
62 3300048906 Ga0496103_0015344 Ga0496103_0015344_1077_2051 309
63 3300005467 Ga0070706_100026643 Ga0070706_1000266436 310
64 3300005468 Ga0070707_100003742 Ga0070707_1000037426 310
65 3300005468 Ga0070707_100005014 Ga0070707_1000050148 310
66 3300005468 Ga0070707_100064471 Ga0070707_1000644714 310
67 3300005471 Ga0070698_100045201 Ga0070698_1000452012 310
68 3300025910 Ga0207684_10030982 Ga0207684_100309823 310
69 3300025910 Ga0207684_10151771 Ga0207684_101517713 310
70 3300025922 Ga0207646_10013331 Ga0207646_100133313 310
71 3300025922 Ga0207646_10024256 Ga0207646_100242565 310
72 3300025922 Ga0207646_10054945 Ga0207646_100549454 310
73 3300038741 Ga0400488_18342 Ga0400488_18342_10995_11945 310
74 3300047322 Ga0495680_0177765 Ga0495680_0177765_217_1185 310
75 iso_pu_bacteria 2675903058 2676476219 310
76 iso_pu_bacteria 2731639228 2731906300 310
77 iso_pu_bacteria 2799112218 2799183260 310
78 iso_pu_bacteria 2827628540 2827634050 310
79 3300045976 Ga0466967_0017569 Ga0466967_0017569_1562_2554 311
80 3300046454 Ga0495592_0117397 Ga0495592_0117397_247_1263 311
81 iso_pu_bacteria 2643221961 2645721483 311
82 iso_pu_bacteria 2643221962 2645724544 311
83 iso_pu_bacteria 2904430863 2904432181 311
84 iso_pu_bacteria 2904501621 2904502034 311
85 iso_pu_bacteria 2908674828 2908677859 311
86 iso_pu_bacteria 2909074476 2909076404 311
87 iso_pu_bacteria 2919039151 2919040320 311
88 iso_pu_bacteria 2919042368 2919044457 311
89 iso_pu_bacteria 2928500415 2928502479 311
90 iso_pu_bacteria 2984551494 2984552200 311
91 3300003285 Ga0007423J48922_100374 Ga0007423J48922_1003745 312
92 3300003285 Ga0007423J48922_100376 Ga0007423J48922_1003762 312
93 3300009094 Ga0111539_10043868 Ga0111539_100438684 312
94 3300009098 Ga0105245_10011376 Ga0105245_100113764 312
95 3300009148 Ga0105243_10001673 Ga0105243_1000167310 312
96 3300009177 Ga0105248_10082129 Ga0105248_100821294 312
97 3300013307 Ga0157372_10066507 Ga0157372_100665072 312
98 3300014326 Ga0157380_10007376 Ga0157380_100073763 312
99 3300044656 Ga0466969_0038202 Ga0466969_0038202_98_1099 312
100 3300044693 Ga0466961_0004435 Ga0466961_0004435_4931_5917 312
101 3300048914 Ga0496111_0269147 Ga0496111_0269147_143_1135 312
102 3300048917 Ga0496114_0144827 Ga0496114_0144827_337_1329 312
103 3300050492 nmdc:mga0yw44_22756_c1 nmdc:mga0yw44_22756_c1_1899_2891 312
104 3300050511 nmdc:mga08y16_68442_c1 nmdc:mga08y16_68442_c1_1727_2719 312
105 iso_pu_bacteria 2643221681 2644455172 312
106 iso_pu_bacteria 2643221697 2644539376 312
107 3300044735 Ga0466968_0037696 Ga0466968_0037696_175_1161 313
108 3300044765 Ga0466970_0033105 Ga0466970_0033105_214_1200 313
109 3300045976 Ga0466967_0563663 Ga0466967_0563663_76_1044 313
110 3300049742 Ga0501080_0212658 Ga0501080_0212658_728_1738 313
111 iso_pu_bacteria 2643221690 2644504310 313
112 iso_pu_bacteria 2738541272 2738694274 313
113 iso_pu_bacteria 2738543027 2739325183 313
114 iso_pu_bacteria 2739367654 2739609440 313
115 iso_pu_bacteria 2758568522 2760305438 313
116 iso_pu_bacteria 2758568621 2760626081 313
117 iso_pu_bacteria 2808606394 2809031088 313
118 iso_pu_bacteria 8056579771 8056584472 313
119 3300009098 Ga0105245_10484873 Ga0105245_104848731 314
120 3300009545 Ga0105237_10214967 Ga0105237_102149672 314
121 3300010375 Ga0105239_10016042 Ga0105239_100160423 314
122 3300020069 Ga0197907_10211698 Ga0197907_102116981 314
123 3300020076 Ga0206355_1705656 Ga0206355_17056563 314
124 3300020077 Ga0206351_10485603 Ga0206351_104856031 314
125 3300020082 Ga0206353_10002063 Ga0206353_100020632 314
126 3300025912 Ga0207707_10152730 Ga0207707_101527303 314
127 3300033541 Ga0316596_1027527 Ga0316596_10275272 314
128 3300044901 Ga0466960_0054456 Ga0466960_0054456_11_994 314
129 3300048907 Ga0496104_0239892 Ga0496104_0239892_568_1584 314
130 3300049581 Ga0501047_0159050 Ga0501047_0159050_1038_2054 314
131 3300049823 Ga0501044_0006508 Ga0501044_0006508_4154_5170 314
132 iso_pu_bacteria 2835188231 2835190772 314
133 iso_pu_bacteria 2870801768 2870804080 314
134 iso_pu_bacteria 2932431166 2932434075 314
135 3300048904 Ga0496101_0114662 Ga0496101_0114662_785_1798 315
136 3300048914 Ga0496111_0091637 Ga0496111_0091637_764_1756 315
137 iso_pu_bacteria 2728369276 2729909124 315
138 iso_pu_bacteria 2935890801 2935893611 315
139 3300009553 Ga0105249_10013394 Ga0105249_100133948 316
140 3300020081 Ga0206354_11002301 Ga0206354_110023012 317
141 3300048929 Ga0496126_0014280 Ga0496126_0014280_1667_2695 317
142 3300003203 JGI25406J46586_10017611 JGI25406J46586_100176113 318
143 3300005471 Ga0070698_100002421 Ga0070698_10000242122 318
144 3300006846 Ga0075430_100074462 Ga0075430_1000744622 318
145 3300006847 Ga0075431_100000813 Ga0075431_10000081324 318
146 3300006880 Ga0075429_100004491 Ga0075429_10000449111 318
147 3300009147 Ga0114129_10000754 Ga0114129_1000075415 318
148 3300009148 Ga0105243_10086942 Ga0105243_100869422 318
149 3300025922 Ga0207646_10073622 Ga0207646_100736223 318
150 3300025938 Ga0207704_10074519 Ga0207704_100745192 318
151 3300031852 Ga0307410_10154107 Ga0307410_101541072 318
152 3300032005 Ga0307411_10275702 Ga0307411_102757022 318
153 3300041443 Ga0451789_0677944 Ga0451789_0677944_251_1273 318
154 3300041491 Ga0451833_1013256 Ga0451833_1013256_463_1485 318
155 3300046492 Ga0495585_0035061 Ga0495585_0035061_716_1705 318
156 3300048907 Ga0496104_0003650 Ga0496104_0003650_5349_6377 318
157 3300048908 Ga0496105_0017964 Ga0496105_0017964_39_1067 318
158 3300048908 Ga0496105_0146587 Ga0496105_0146587_252_1280 318
159 3300048910 Ga0496107_0221598 Ga0496107_0221598_207_1235 318
160 3300048911 Ga0496108_0359088 Ga0496108_0359088_191_1219 318
161 3300048912 Ga0496109_0158634 Ga0496109_0158634_232_1260 318
162 3300048912 Ga0496109_0311750 Ga0496109_0311750_18_1034 318
163 3300048912 Ga0496109_0333538 Ga0496109_0333538_192_1220 318
164 3300048912 Ga0496109_0450686 Ga0496109_0450686_98_1126 318
165 3300048914 Ga0496111_0102989 Ga0496111_0102989_545_1561 318
166 3300048915 Ga0496112_0249352 Ga0496112_0249352_88_1116 318
167 3300048917 Ga0496114_0019962 Ga0496114_0019962_2701_3729 318
168 3300048917 Ga0496114_0072032 Ga0496114_0072032_1779_2807 318
169 3300048918 Ga0496115_0022868 Ga0496115_0022868_3045_4073 318
170 3300049128 Ga0501308_008479 Ga0501308_008479_44_1051 318
171 3300050507 nmdc:mga05p37_1763_c1 nmdc:mga05p37_1763_c1_22669_23679 318
172 3300050508 nmdc:mga09592_5768_c1 nmdc:mga09592_5768_c1_4172_5182 318
173 3300050509 nmdc:mga0qj67_7241_c1 nmdc:mga0qj67_7241_c1_154_1164 318
174 3300050510 nmdc:mga06r32_20821_c1 nmdc:mga06r32_20821_c1_4970_5980 318
175 3300053084 Ga0495595_0008839 Ga0495595_0008839_2415_3431 318
176 iso_pu_bacteria 2893684298 2893685765 318
177 3300005329 Ga0070683_100178018 Ga0070683_1001780182 319
178 3300005535 Ga0070684_100122346 Ga0070684_1001223462 319
179 3300025935 Ga0207709_10174918 Ga0207709_101749182 319
180 3300025944 Ga0207661_10189291 Ga0207661_101892912 319
181 3300044683 Ga0466965_0049347 Ga0466965_0049347_400_1500 330
182 3300002075 JGI24738J21930_10021781 JGI24738J21930_100217812 335
183 3300005329 Ga0070683_100075407 Ga0070683_1000754073 335
184 3300005364 Ga0070673_100040630 Ga0070673_1000406301 335
185 3300005438 Ga0070701_10013100 Ga0070701_100131002 335
186 3300005441 Ga0070700_100003127 Ga0070700_1000031279 335
187 3300005459 Ga0068867_100007670 Ga0068867_1000076708 335
188 3300005466 Ga0070685_10015652 Ga0070685_100156524 335
189 3300005543 Ga0070672_100011435 Ga0070672_1000114354 335
190 3300005578 Ga0068854_100010445 Ga0068854_1000104452 335
191 3300005616 Ga0068852_100004510 Ga0068852_1000045103 335
192 3300005718 Ga0068866_10040767 Ga0068866_100407673 335
193 3300005719 Ga0068861_100003671 Ga0068861_1000036712 335
194 3300005840 Ga0068870_10040543 Ga0068870_100405433 335
195 3300006038 Ga0075365_10012524 Ga0075365_100125242 335
196 3300006844 Ga0075428_100250135 Ga0075428_1002501352 335
197 3300006881 Ga0068865_100008871 Ga0068865_1000088712 335
198 3300025899 Ga0207642_10122704 Ga0207642_101227042 335
199 3300025901 Ga0207688_10088257 Ga0207688_100882572 335
200 3300025908 Ga0207643_10023437 Ga0207643_100234374 335
201 3300025935 Ga0207709_10013249 Ga0207709_100132495 335
202 3300025936 Ga0207670_10055858 Ga0207670_100558582 335
203 3300025937 Ga0207669_10004166 Ga0207669_100041664 335
204 3300025938 Ga0207704_10054152 Ga0207704_100541523 335
205 3300025940 Ga0207691_10061679 Ga0207691_100616794 335
206 3300025944 Ga0207661_10032421 Ga0207661_100324215 335
207 3300026075 Ga0207708_10000836 Ga0207708_1000083610 335
208 3300026089 Ga0207648_10000921 Ga0207648_1000092123 335
209 3300026118 Ga0207675_100002314 Ga0207675_1000023146 335

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

176

250

0.95

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

33

323

0.89

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

64

306

0.79

PF00890

FAD_binding_2

FAD binding domain

34

102

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
5uth-assembly1.cif.gz_A crystal structure of thioredoxin reductase from mycobacterium smegmatis in complex with fad 0.9629 20 324
2a87-assembly1.cif.gz_B crystal structure of m. tuberculosis thioredoxin reductase 0.955 22 324
6bpy-assembly1.cif.gz_A aspergillus fumigatus thioredoxin reductase 0.955 20 324
7jyp-assembly1.cif.gz_A-2 structure of thioredoxin reductase from the thermophilic eubacterium thermosipho africanus tcf52b 0.9538 18 319
5uth-assembly1.cif.gz_A crystal structure of thioredoxin reductase from mycobacterium smegmatis in complex with fad 0.9538 20 324
ID Description Score Start End Superfamily
5uthA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.979 134 256 3.50.50.60
5uthA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9779 20 324 3.50.50.60
af_Q54UU8_8_306_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9716 23 312 3.50.50.60
5uthA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9713 134 256 3.50.50.60
af_P9WHH1_16_305_2.30.40.10 Mainly Beta;Roll;Urease, subunit C; domain 1;Urease, subunit C, domain 1 0.9711 23 312 2.30.40.10
ID Description Score Start End GO Terms
AF-A0A3C0YJU2-F1-model_v4 deleted 0.9865 152 221
AF-A0A6B3EPH4-F1-model_v4 FAD-dependent oxidoreductase 0.9848 130 242 GO:0016668
AF-A0A3B9APB7-F1-model_v4 Thioredoxin-disulfide reductase 0.9812 130 293 GO:0016668
AF-A0A3D5UWY6-F1-model_v4 Thioredoxin-disulfide reductase 0.9797 159 248 GO:0016491
AF-A0A2V3I173-F1-model_v4 Thioredoxin-disulfide reductase 0.9792 22 326 GO:0004791
GO:0005737
GO:0019430

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pLDDT pTM Quality
88.92 0.81 High
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Predicted Structure (AlphaFold2)

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