F319185

General Info

Members Datasets Scaffolds Average Seq Length
209 148 418 131

Family's Representative Sequence

Representative Sequence 3300025942|Ga0207689_10505969|Ga0207689_105059691
Length 151
Sequence MHSAPRMLDAMDDDLRVTDDIALPRAELSWRFSRSGGPGGQSVNTTDSRVELRFDLLATAALPEPLKDRALQRLAARLVDGVLSITASEHRSQLQNRRAAQARLVALLADAIAPPARARRASRPSKGAVEARLDAKRRRGLTKRHRRPPDE

Samples

Sample ID Description Type Environment
1 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
50 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
51 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
53 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
89 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
92 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
93 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
94 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
95 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
96 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
97 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
98 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
101 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
102 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
103 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
104 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
105 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
106 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
107 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
108 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
109 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
110 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
111 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
112 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
113 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
114 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
119 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
120 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
121 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
122 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
123 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
124 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
128 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
129 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
130 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
133 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
134 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
135 2506783011 Frankia datiscae Dg1 Isolate Nodule
136 2619618881 Frankia sp. ACN1ag Isolate Unclassified
137 2626541554 Frankia sp. AvcI.1 Isolate Nodule
138 2643221641 Nocardioides sp. Root122 Isolate Unclassified
139 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
140 2739367898 Nocardioides sp. CF479 Isolate Unclassified
141 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
142 2773857933 Frankia sp. BMG5.30 Isolate Nodule
143 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
144 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
145 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule
146 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
147 8054920844 Frankia tisae Agncl-8 Isolate Nodule
148 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.87
Metatranscriptomes 1.44
Isolates 6.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.48
Nodule 2.87
Rhizoplane 7.66
Rhizosphere 82.3
Stem 0
Stem Tuber 0
Unclassified 2.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207689_10505969 3300025942 Bacteria 1012
2 JGI24752J21851_1008860 3300001976 Bacteria 1312
3 JGI24751J29686_10000571 3300002459 Bacteria 9973
4 Ga0070658_10296386 3300005327 Bacteria 1379
5 Ga0070683_100121938 3300005329 Bacteria 2463
6 Ga0070683_100265425 3300005329 Bacteria 1633
7 Ga0070670_100101970 3300005331 Bacteria 2471
8 Ga0070682_100380786 3300005337 Bacteria 1061
9 Ga0068868_100375821 3300005338 Bacteria 1222
10 Ga0070660_100087705 3300005339 Bacteria 2449
11 Ga0070661_100025800 3300005344 Bacteria 4225
12 Ga0070661_100102373 3300005344 Bacteria 2131
13 Ga0070692_10091147 3300005345 Bacteria 1657
14 Ga0070668_100000742 3300005347 Bacteria 22332
15 Ga0070668_100038818 3300005347 Bacteria 3641
16 Ga0070675_100028146 3300005354 Bacteria 4522
17 Ga0070703_10028587 3300005406 Bacteria 1668
18 Ga0070700_100029222 3300005441 Bacteria 3285
19 Ga0070694_100500779 3300005444 Bacteria 967
20 Ga0070663_100047020 3300005455 Bacteria 3056
21 Ga0070681_10865656 3300005458 Unclassified 822
22 Ga0070699_100054422 3300005518 Bacteria 3464
23 Ga0070684_100011812 3300005535 Bacteria 6970
24 Ga0070684_100126624 3300005535 Bacteria 2301
25 Ga0070672_100812386 3300005543 Bacteria 823
26 Ga0070664_100080275 3300005564 Bacteria 2809
27 Ga0070664_101146832 3300005564 Bacteria 733
28 Ga0068857_100061975 3300005577 Bacteria 3324
29 Ga0068857_100891513 3300005577 Bacteria 853
30 Ga0068852_101723347 3300005616 Bacteria 649
31 Ga0068864_100597600 3300005618 Bacteria 1070
32 Ga0068870_10001569 3300005840 Bacteria 9289
33 Ga0068863_100016068 3300005841 Bacteria 7178
34 Ga0068858_100006194 3300005842 Bacteria 11667
35 Ga0068862_100035960 3300005844 Bacteria 4196
36 Ga0068862_100060142 3300005844 Bacteria 3263
37 Ga0070717_11913723 3300006028 Bacteria 535
38 Ga0075428_100538647 3300006844 Bacteria 1248
39 Ga0075430_100001085 3300006846 Bacteria 21588
40 Ga0075430_100147111 3300006846 Bacteria 1962
41 Ga0075431_100078392 3300006847 Bacteria 3410
42 Ga0075431_101652139 3300006847 Bacteria 598
43 Ga0075429_100347592 3300006880 Bacteria 1298
44 Ga0075429_100489957 3300006880 Bacteria 1077
45 Ga0105251_10023376 3300009011 Bacteria 3192
46 Ga0105245_10022191 3300009098 Bacteria 5573
47 Ga0105247_10536876 3300009101 Bacteria 858
48 Ga0114129_10648412 3300009147 Bacteria 1363
49 Ga0105243_11568314 3300009148 Bacteria 684
50 Ga0105248_10101880 3300009177 Bacteria 3236
51 Ga0105248_11157409 3300009177 Bacteria 874
52 Ga0105238_10451685 3300009551 Bacteria 1282
53 Ga0105238_12983034 3300009551 Bacteria 509
54 Ga0105249_10102901 3300009553 Bacteria 2689
55 Ga0099796_10323599 3300010159 Bacteria 659
56 Ga0105246_10067468 3300011119 Bacteria 2506
57 Ga0105246_10821752 3300011119 Bacteria 826
58 Ga0163162_10158351 3300013306 Bacteria 2386
59 Ga0157372_10453989 3300013307 Bacteria 1493
60 Ga0157372_10766100 3300013307 Bacteria 1122
61 Ga0157375_10025668 3300013308 Bacteria 5480
62 Ga0163163_10078055 3300014325 Bacteria 3307
63 Ga0163163_10886562 3300014325 Bacteria 955
64 Ga0163163_11761757 3300014325 Bacteria 680
65 Ga0157380_10641530 3300014326 Bacteria 1058
66 Ga0157379_10177517 3300014968 Bacteria 1924
67 Ga0157379_10363307 3300014968 Bacteria 1327
68 Ga0206353_10729708 3300020082 Bacteria 817
69 Ga0206353_11043364 3300020082 Bacteria 564
70 Ga0213875_10084437 3300021388 Bacteria 1482
71 Ga0224712_10085518 3300022467 Bacteria 1310
72 Ga0207653_10007943 3300025885 Bacteria 3307
73 Ga0207643_10000353 3300025908 Bacteria 30876
74 Ga0207705_10236575 3300025909 Bacteria 1390
75 Ga0207684_10431083 3300025910 Unclassified 1132
76 Ga0207707_10069525 3300025912 Bacteria 3068
77 Ga0207660_10024537 3300025917 Bacteria 4084
78 Ga0207657_10094236 3300025919 Bacteria 2493
79 Ga0207657_10100801 3300025919 Bacteria 2397
80 Ga0207649_10039118 3300025920 Bacteria 2874
81 Ga0207649_10356480 3300025920 Bacteria 1084
82 Ga0207650_10021934 3300025925 Bacteria 4519
83 Ga0207687_10527039 3300025927 Bacteria 989
84 Ga0207700_10004540 3300025928 Bacteria 8203
85 Ga0207700_10128010 3300025928 Bacteria 2069
86 Ga0207664_10131393 3300025929 Bacteria 2108
87 Ga0207664_10610118 3300025929 Bacteria 980
88 Ga0207664_11269607 3300025929 Bacteria 655
89 Ga0207690_10021117 3300025932 Bacteria 4033
90 Ga0207665_10072910 3300025939 Bacteria 2347
91 Ga0207665_10729546 3300025939 Bacteria 780
92 Ga0207691_10531716 3300025940 Bacteria 997
93 Ga0207689_10208879 3300025942 Bacteria 1613
94 Ga0207661_10006684 3300025944 Bacteria 8157
95 Ga0207661_10746432 3300025944 Bacteria 901
96 Ga0207679_10014201 3300025945 Bacteria 5232
97 Ga0207679_10797559 3300025945 Bacteria 861
98 Ga0207712_10055813 3300025961 Bacteria 2780
99 Ga0207668_10001857 3300025972 Bacteria 12335
100 Ga0207668_10010978 3300025972 Bacteria 5492
101 Ga0207658_10008767 3300025986 Bacteria 6867
102 Ga0207703_10009477 3300026035 Bacteria 7644
103 Ga0207703_10585551 3300026035 Bacteria 1054
104 Ga0207678_10045036 3300026067 Bacteria 3815
105 Ga0207708_10016065 3300026075 Bacteria 5623
106 Ga0207641_10112332 3300026088 Bacteria 2417
107 Ga0207676_10017919 3300026095 Bacteria 5138
108 Ga0207676_10471927 3300026095 Bacteria 1187
109 Ga0207674_10022205 3300026116 Bacteria 6820
110 Ga0207674_10033622 3300026116 Bacteria 5367
111 Ga0207675_100314178 3300026118 Bacteria 1529
112 Ga0207698_11644767 3300026142 Bacteria 658
113 Ga0268266_11605140 3300028379 Bacteria 626
114 Ga0268265_10023989 3300028380 Bacteria 4309
115 Ga0268265_10254211 3300028380 Bacteria 1558
116 Ga0307508_10631447 3300031616 Bacteria 675
117 Ga0307405_10024686 3300031731 Bacteria 3438
118 Ga0307413_10046553 3300031824 Bacteria 2580
119 Ga0307413_11659954 3300031824 Unclassified 569
120 Ga0307410_10348599 3300031852 Bacteria 1182
121 Ga0307410_10892498 3300031852 Bacteria 761
122 Ga0307406_10007137 3300031901 Bacteria 6188
123 Ga0307406_10605202 3300031901 Bacteria 904
124 Ga0307407_10016578 3300031903 Bacteria 3672
125 Ga0307412_10054454 3300031911 Bacteria 2656
126 Ga0307409_100006187 3300031995 Bacteria 7002
127 Ga0307409_100170153 3300031995 Bacteria 1917
128 Ga0307409_100178231 3300031995 Bacteria 1878
129 Ga0307409_100286237 3300031995 Bacteria 1526
130 Ga0307409_100351121 3300031995 Bacteria 1392
131 Ga0307409_100626488 3300031995 Bacteria 1066
132 Ga0307409_101451515 3300031995 Bacteria 713
133 Ga0307416_100714953 3300032002 Bacteria 1092
134 Ga0307416_100798048 3300032002 Bacteria 1039
135 Ga0307416_100844586 3300032002 Bacteria 1014
136 Ga0307414_10084683 3300032004 Bacteria 2333
137 Ga0307411_10937517 3300032005 Bacteria 771
138 Ga0307415_100000022 3300032126 Bacteria 65606
139 Ga0307415_100026586 3300032126 Bacteria 3653
140 Ga0307415_100032274 3300032126 Bacteria 3385
141 Ga0307415_100090377 3300032126 Bacteria 2215
142 Ga0307415_100242509 3300032126 Bacteria 1459
143 Ga0307415_100294096 3300032126 Bacteria 1342
144 Ga0373954_0339786 3300035118 Bacteria 741
145 Ga0395905_0021664 3300037471 Bacteria 6080
146 Ga0436364_0423253 3300037853 Bacteria 1851
147 Ga0436364_1115671 3300037853 Bacteria 2578
148 Ga0395901_0071204 3300038443 Bacteria 3623
149 Ga0436365_0594787 3300039437 Bacteria 727
150 Ga0436363_0526412 3300039450 Bacteria 743
151 Ga0436362_0187287 3300039453 Bacteria 1250
152 Ga0466969_0458139 3300044656 Unclassified 580
153 Ga0466966_0001760 3300044684 Bacteria 14029
154 Ga0466966_0068518 3300044684 Bacteria 2227
155 Ga0466968_0271350 3300044735 Bacteria 810
156 Ga0466970_0424398 3300044765 Bacteria 760
157 Ga0466957_0210800 3300044842 Bacteria 1279
158 Ga0466960_0023412 3300044901 Bacteria 2773
159 Ga0466959_0053150 3300045049 Bacteria 2962
160 Ga0466967_0282069 3300045976 Bacteria 1594
161 Ga0495650_0000833 3300046471 Bacteria 37204
162 Ga0495596_0001426 3300046500 Bacteria 13714
163 Ga0495609_0041972 3300046538 Bacteria 2054
164 Ga0496101_0705733 3300048904 Bacteria 796
165 Ga0496102_0384370 3300048905 Bacteria 1321
166 Ga0496103_0138524 3300048906 Bacteria 1555
167 Ga0496104_0067983 3300048907 Bacteria 3385
168 Ga0496104_0197859 3300048907 Bacteria 1922
169 Ga0496105_0099867 3300048908 Bacteria 2397
170 Ga0496108_0122844 3300048911 Bacteria 2228
171 Ga0496108_0193565 3300048911 Bacteria 1763
172 Ga0496109_0019941 3300048912 Bacteria 5918
173 Ga0496109_0035868 3300048912 Bacteria 4477
174 Ga0496109_1703787 3300048912 Unclassified 564
175 Ga0496110_0133128 3300048913 Bacteria 2246
176 Ga0496112_0086764 3300048915 Bacteria 3096
177 Ga0496112_0231886 3300048915 Bacteria 1800
178 Ga0496113_0135862 3300048916 Bacteria 1932
179 Ga0496113_0475093 3300048916 Bacteria 1004
180 Ga0501036_1294013 3300049572 Bacteria 593
181 Ga0501039_0070432 3300049575 Bacteria 2717
182 Ga0501039_0206430 3300049575 Bacteria 1545
183 Ga0501040_0545818 3300049576 Bacteria 836
184 Ga0501040_1134729 3300049576 Bacteria 567
185 Ga0501067_0445915 3300049583 Bacteria 723
186 Ga0501067_0521714 3300049583 Bacteria 665
187 Ga0501069_0051453 3300049585 Bacteria 2292
188 Ga0501072_0543682 3300049588 Bacteria 918
189 nmdc:mga0yw44_461977_c1 3300050492 Bacteria 860
190 nmdc:mga09592_506192_c1 3300050508 Bacteria 1039
191 nmdc:mga0qj67_1373347_c1 3300050509 Bacteria 546
192 nmdc:mga0qj67_359766_c1 3300050509 Bacteria 1176
193 nmdc:mga0qj67_443_c1 3300050509 Bacteria 28269
194 nmdc:mga06r32_1363485_c1 3300050510 Bacteria 652
195 Ga0530510_0659677 3300061734 Bacteria 797
196 2506865329 2506783011 Bacteria 5323186
197 2619852982 2619618881 Bacteria 7521104
198 2626637345 2626541554 Bacteria 7741902
199 2644231553 2643221641 Bacteria 4490190
200 2644538101 2643221697 Bacteria 3575694
201 2740167348 2739367898 Bacteria 4367674
202 2774394312 2773857762 Bacteria 5971770
203 2774901347 2773857933 Bacteria 5818019
204 2812352915 2811994878 Bacteria 5992952
205 2868089354 2868088558 Bacteria 7609351
206 8054614353 8054609563 Bacteria 5170090
207 8054918711 8054913762 Bacteria 7713009
208 8054922636 8054920844 Bacteria 7068637
209 8055070440 8055066027 Bacteria 9479577
210 Ga0207689_10505969
211 JGI24752J21851_1008860
212 JGI24751J29686_10000571
213 Ga0070658_10296386
214 Ga0070683_100121938
215 Ga0070683_100265425
216 Ga0070670_100101970
217 Ga0070682_100380786
218 Ga0068868_100375821
219 Ga0070660_100087705
220 Ga0070661_100025800
221 Ga0070661_100102373
222 Ga0070692_10091147
223 Ga0070668_100000742
224 Ga0070668_100038818
225 Ga0070675_100028146
226 Ga0070703_10028587
227 Ga0070700_100029222
228 Ga0070694_100500779
229 Ga0070663_100047020
230 Ga0070681_10865656
231 Ga0070699_100054422
232 Ga0070684_100011812
233 Ga0070684_100126624
234 Ga0070672_100812386
235 Ga0070664_100080275
236 Ga0070664_101146832
237 Ga0068857_100061975
238 Ga0068857_100891513
239 Ga0068852_101723347
240 Ga0068864_100597600
241 Ga0068870_10001569
242 Ga0068863_100016068
243 Ga0068858_100006194
244 Ga0068862_100035960
245 Ga0068862_100060142
246 Ga0070717_11913723
247 Ga0075428_100538647
248 Ga0075430_100001085
249 Ga0075430_100147111
250 Ga0075431_100078392
251 Ga0075431_101652139
252 Ga0075429_100347592
253 Ga0075429_100489957
254 Ga0105251_10023376
255 Ga0105245_10022191
256 Ga0105247_10536876
257 Ga0114129_10648412
258 Ga0105243_11568314
259 Ga0105248_10101880
260 Ga0105248_11157409
261 Ga0105238_10451685
262 Ga0105238_12983034
263 Ga0105249_10102901
264 Ga0099796_10323599
265 Ga0105246_10067468
266 Ga0105246_10821752
267 Ga0163162_10158351
268 Ga0157372_10453989
269 Ga0157372_10766100
270 Ga0157375_10025668
271 Ga0163163_10078055
272 Ga0163163_10886562
273 Ga0163163_11761757
274 Ga0157380_10641530
275 Ga0157379_10177517
276 Ga0157379_10363307
277 Ga0206353_10729708
278 Ga0206353_11043364
279 Ga0213875_10084437
280 Ga0224712_10085518
281 Ga0207653_10007943
282 Ga0207643_10000353
283 Ga0207705_10236575
284 Ga0207684_10431083
285 Ga0207707_10069525
286 Ga0207660_10024537
287 Ga0207657_10094236
288 Ga0207657_10100801
289 Ga0207649_10039118
290 Ga0207649_10356480
291 Ga0207650_10021934
292 Ga0207687_10527039
293 Ga0207700_10004540
294 Ga0207700_10128010
295 Ga0207664_10131393
296 Ga0207664_10610118
297 Ga0207664_11269607
298 Ga0207690_10021117
299 Ga0207665_10072910
300 Ga0207665_10729546
301 Ga0207691_10531716
302 Ga0207689_10208879
303 Ga0207661_10006684
304 Ga0207661_10746432
305 Ga0207679_10014201
306 Ga0207679_10797559
307 Ga0207712_10055813
308 Ga0207668_10001857
309 Ga0207668_10010978
310 Ga0207658_10008767
311 Ga0207703_10009477
312 Ga0207703_10585551
313 Ga0207678_10045036
314 Ga0207708_10016065
315 Ga0207641_10112332
316 Ga0207676_10017919
317 Ga0207676_10471927
318 Ga0207674_10022205
319 Ga0207674_10033622
320 Ga0207675_100314178
321 Ga0207698_11644767
322 Ga0268266_11605140
323 Ga0268265_10023989
324 Ga0268265_10254211
325 Ga0307508_10631447
326 Ga0307405_10024686
327 Ga0307413_10046553
328 Ga0307413_11659954
329 Ga0307410_10348599
330 Ga0307410_10892498
331 Ga0307406_10007137
332 Ga0307406_10605202
333 Ga0307407_10016578
334 Ga0307412_10054454
335 Ga0307409_100006187
336 Ga0307409_100170153
337 Ga0307409_100178231
338 Ga0307409_100286237
339 Ga0307409_100351121
340 Ga0307409_100626488
341 Ga0307409_101451515
342 Ga0307416_100714953
343 Ga0307416_100798048
344 Ga0307416_100844586
345 Ga0307414_10084683
346 Ga0307411_10937517
347 Ga0307415_100000022
348 Ga0307415_100026586
349 Ga0307415_100032274
350 Ga0307415_100090377
351 Ga0307415_100242509
352 Ga0307415_100294096
353 Ga0373954_0339786
354 Ga0395905_0021664
355 Ga0436364_0423253
356 Ga0436364_1115671
357 Ga0395901_0071204
358 Ga0436365_0594787
359 Ga0436363_0526412
360 Ga0436362_0187287
361 Ga0466969_0458139
362 Ga0466966_0001760
363 Ga0466966_0068518
364 Ga0466968_0271350
365 Ga0466970_0424398
366 Ga0466957_0210800
367 Ga0466960_0023412
368 Ga0466959_0053150
369 Ga0466967_0282069
370 Ga0495650_0000833
371 Ga0495596_0001426
372 Ga0495609_0041972
373 Ga0496101_0705733
374 Ga0496102_0384370
375 Ga0496103_0138524
376 Ga0496104_0067983
377 Ga0496104_0197859
378 Ga0496105_0099867
379 Ga0496108_0122844
380 Ga0496108_0193565
381 Ga0496109_0019941
382 Ga0496109_0035868
383 Ga0496109_1703787
384 Ga0496110_0133128
385 Ga0496112_0086764
386 Ga0496112_0231886
387 Ga0496113_0135862
388 Ga0496113_0475093
389 Ga0501036_1294013
390 Ga0501039_0070432
391 Ga0501039_0206430
392 Ga0501040_0545818
393 Ga0501040_1134729
394 Ga0501067_0445915
395 Ga0501067_0521714
396 Ga0501069_0051453
397 Ga0501072_0543682
398 nmdc:mga0yw44_461977_c1
399 nmdc:mga09592_506192_c1
400 nmdc:mga0qj67_1373347_c1
401 nmdc:mga0qj67_359766_c1
402 nmdc:mga0qj67_443_c1
403 nmdc:mga06r32_1363485_c1
404 Ga0530510_0659677
405 2506865329
406 2619852982
407 2626637345
408 2644231553
409 2644538101
410 2740167348
411 2774394312
412 2774901347
413 2812352915
414 2868089354
415 8054614353
416 8054918711
417 8054922636
418 8055070440

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00472

RF-1

RF-1 domain

16

147

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ce4-assembly1.cif.gz_u 39s large subunit of the porcine mitochondrial ribosome 0.8183 13 98
3j7y-assembly1.cif.gz_p structure of the large ribosomal subunit from human mitochondria 0.7819 14 98
7oi6-assembly1.cif.gz_p cryo-em structure of late human 39s mitoribosome assembly intermediates, state 1 0.7752 13 98
2jva-assembly1.cif.gz_A nmr solution structure of peptidyl-trna hydrolase domain protein from pseudomonas syringae pv. tomato. northeast structural genomics consortium target psr211 0.7508 5 98
4ce4-assembly1.cif.gz_u 39s large subunit of the porcine mitochondrial ribosome 0.7327 13 98
ID Description Score Start End Superfamily
af_A0A0R0GKX2_1_61_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.8378 43 98 3.30.160.20
3j7yp00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.7819 14 98 3.30.160.20
af_A0A0R0GKX2_1_61_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.7696 43 98 3.30.160.20
2jvaA00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.7508 5 98 3.30.160.20
af_A0A143ZXY8_9_129_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.7506 8 124 3.30.160.20
ID Description Score Start End GO Terms
AF-A0A7U0HDQ5-F1-model_v4 deleted 0.9452 11 73
AF-A0A838SMQ6-F1-model_v4 Aminoacyl-tRNA hydrolase (EC 3.1.1.29) 0.9369 1 100 GO:0003747
GO:0004045
GO:0043022
GO:0072344
AF-A0A0K2RC20-F1-model_v4 Peptidyl-tRNA hydrolase ICT1, mitochondrial 0.9337 4 98 GO:0003747
GO:0004045
GO:0043022
GO:0072344
AF-A0A2R7MNJ3-F1-model_v4 Aminoacyl-tRNA hydrolase 0.9296 2 98 GO:0003747
GO:0004045
GO:0043022
GO:0072344
AF-A0A4R4QL15-F1-model_v4 Aminoacyl-tRNA hydrolase (EC 3.1.1.29) 0.9289 1 99 GO:0003747
GO:0004045
GO:0043022
GO:0072344

Map