F318456
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 208 | 161 | 416 | 311 |
Family's Representative Sequence
| Representative Sequence | 3300053178|Ga0500637_0003529|Ga0500637_0003529_4898_5947 |
| Length | 349 |
| Sequence | MSSEVAVEGSMKEGVGTILVAGSANLDFVARASHVPGPGETVLGRDFAIFPGGKGANQAVACARAGGVSTRMLLALGEDAFAPLIEESLRGAGVQLHIVRVAQTATGAALICVSDDAENAITVAPGANSMLRAVDLPDLEGVEYLLLQLEIPLETVIDIARAAKAKGVNVVLNAAPAQPLPDELLDVIDVLIVNENELTQVAGHGGSVAQRLESLRVPLAIVTLGARGCCARRRGEFFLQPAFRVQSVDATAAGDTFCAVLAASLCSNATLPLALTRASSAAALATTRIGAQSSIPTCDEVEALMRSDSSARGCDDTIALAAYCELTTYHGLQPLPAAASNPLPTDESA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300053178 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere | Metagenome | Endosphere |
| 2 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 3 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 4 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 5 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 6 | 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Metagenome | Rhizosphere |
| 7 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 11 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 12 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 15 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 16 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 17 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 18 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 20 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 22 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 23 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 24 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 25 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 26 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 27 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 28 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 29 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 30 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 31 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 32 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 33 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 34 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 35 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 36 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 40 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009993 | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG | Metagenome | Rhizosphere |
| 43 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 52 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 54 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 82 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 86 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 87 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 88 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 89 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 90 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 91 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 92 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 93 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 94 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 95 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 96 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 97 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 98 | 3300041452 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG | Metagenome | Rhizoplane |
| 99 | 3300041460 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG | Metagenome | Rhizoplane |
| 100 | 3300041486 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG | Metagenome | Rhizoplane |
| 101 | 3300041498 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG | Metagenome | Unclassified |
| 102 | 3300041509 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG | Metagenome | Unclassified |
| 103 | 3300042014 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 | Metagenome | Rhizosphere |
| 104 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 105 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 106 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 107 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 108 | 3300046452 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300046518 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300046525 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere | Metagenome | Rhizosphere |
| 114 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046692 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300047318 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300047447 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 122 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 123 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 124 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 125 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 126 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 127 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 128 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 129 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 130 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 131 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 132 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 133 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 134 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 135 | 3300050516 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation | Metagenome | Endosphere |
| 136 | 3300053092 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere | Metagenome | Endosphere |
| 137 | 3300053119 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere | Metagenome | Endosphere |
| 138 | 3300053134 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere | Metagenome | Endosphere |
| 139 | 3300053146 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere | Metagenome | Endosphere |
| 140 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 141 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 142 | 3300053177 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere | Metagenome | Endosphere |
| 143 | 2521172590 | Herbaspirillum sp. GW103 | Isolate | Rhizosphere |
| 144 | 2551306416 | Herbaspirillum seropedicae Os34 | Isolate | Unclassified |
| 145 | 2571042365 | Lysobacter oryzae DSM 21044 | Isolate | Rhizosphere |
| 146 | 2626541554 | Frankia sp. AvcI.1 | Isolate | Nodule |
| 147 | 2643221577 | Rhodanobacter sp. Root627 | Isolate | Unclassified |
| 148 | 2643221581 | Pseudoxanthomonas sp. Root65 | Isolate | Unclassified |
| 149 | 2643221685 | Rhodanobacter sp. Root480 | Isolate | Unclassified |
| 150 | 2818991449 | Herbaspirillum huttiense 1147 | Isolate | Unclassified |
| 151 | 2904439833 | Herbaspirillum sp. 1589 | Isolate | Rhizosphere |
| 152 | 2904530477 | Herbaspirillum huttiense 611 | Isolate | Unclassified |
| 153 | 2904584206 | Herbaspirillum sp. 1050 | Isolate | Unclassified |
| 154 | 2904589729 | Herbaspirillum sp. 1130 | Isolate | Unclassified |
| 155 | 2904601388 | Herbaspirillum sp. 1273 | Isolate | Rhizosphere |
| 156 | 2919046199 | Herbaspirillum frisingense 596 | Isolate | Unclassified |
| 157 | 2919079590 | Herbaspirillum sp. 1173 | Isolate | Unclassified |
| 158 | 2923510766 | Herbaspirillum rubrisubalbicans SLBN-127 | Isolate | Rhizosphere |
| 159 | 2928130867 | Herbaspirillum seropedicae 1977 | Isolate | Unclassified |
| 160 | 2941475908 | Stenotrophomonas rhizophila 2680 | Isolate | Rhizosphere |
| 161 | 2987605356 | Stenotrophomonas sp. ATCM1_4 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 90.87 |
| Metatranscriptomes | 0 |
| Isolates | 9.13 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 7.21 |
| Nodule | 0.48 |
| Rhizoplane | 2.4 |
| Rhizosphere | 75 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 1.92 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0500637_0003529 | 3300053178 | Bacteria | 7246 |
| 2 | rootH1_10251723 | 3300003323 | Bacteria | 2349 |
| 3 | Ga0055531_10016167 | 3300003794 | Bacteria | 3237 |
| 4 | Ga0070690_100108563 | 3300005330 | Bacteria | 1849 |
| 5 | Ga0070689_100019748 | 3300005340 | Bacteria | 4985 |
| 6 | Ga0070687_100045488 | 3300005343 | Bacteria | 2242 |
| 7 | Ga0070668_100006134 | 3300005347 | Bacteria | 8911 |
| 8 | Ga0070674_100152922 | 3300005356 | Bacteria | 1743 |
| 9 | Ga0070667_100294264 | 3300005367 | Bacteria | 1461 |
| 10 | Ga0070700_100138730 | 3300005441 | Bacteria | 1650 |
| 11 | Ga0070694_100024797 | 3300005444 | Bacteria | 3874 |
| 12 | Ga0070663_100018114 | 3300005455 | Bacteria | 4610 |
| 13 | Ga0070662_100011124 | 3300005457 | Bacteria | 5926 |
| 14 | Ga0070681_10153286 | 3300005458 | Bacteria | 2230 |
| 15 | Ga0070685_10115639 | 3300005466 | Bacteria | 1659 |
| 16 | Ga0070679_100213681 | 3300005530 | Unclassified | 1892 |
| 17 | Ga0070686_100018840 | 3300005544 | Bacteria | 4059 |
| 18 | Ga0070665_100000049 | 3300005548 | Bacteria | 261123 |
| 19 | Ga0068855_100000046 | 3300005563 | Bacteria | 147225 |
| 20 | Ga0068855_100043440 | 3300005563 | Bacteria | 5324 |
| 21 | Ga0070664_100019057 | 3300005564 | Bacteria | 5643 |
| 22 | Ga0068856_100578998 | 3300005614 | Bacteria | 1144 |
| 23 | Ga0068852_100010496 | 3300005616 | Bacteria | 6925 |
| 24 | Ga0068864_100006687 | 3300005618 | Bacteria | 9441 |
| 25 | Ga0068861_100000338 | 3300005719 | Bacteria | 26617 |
| 26 | Ga0068861_100056636 | 3300005719 | Bacteria | 2993 |
| 27 | Ga0068861_100233329 | 3300005719 | Bacteria | 1562 |
| 28 | Ga0068851_10103596 | 3300005834 | Bacteria | 1512 |
| 29 | Ga0068870_10079640 | 3300005840 | Bacteria | 1808 |
| 30 | Ga0068863_100004261 | 3300005841 | Bacteria | 14110 |
| 31 | Ga0068863_100062260 | 3300005841 | Bacteria | 3529 |
| 32 | Ga0068860_100000546 | 3300005843 | Bacteria | 45813 |
| 33 | Ga0068862_100000642 | 3300005844 | Bacteria | 36102 |
| 34 | Ga0075365_10168122 | 3300006038 | Bacteria | 1530 |
| 35 | Ga0075364_10219997 | 3300006051 | Bacteria | 1289 |
| 36 | Ga0075428_100007932 | 3300006844 | Bacteria | 11776 |
| 37 | Ga0075428_100208960 | 3300006844 | Bacteria | 2109 |
| 38 | Ga0075430_100000595 | 3300006846 | Bacteria | 27480 |
| 39 | Ga0075430_100004583 | 3300006846 | Bacteria | 11630 |
| 40 | Ga0075431_100011193 | 3300006847 | Bacteria | 9035 |
| 41 | Ga0075429_100000989 | 3300006880 | Bacteria | 22598 |
| 42 | Ga0075429_100168991 | 3300006880 | Bacteria | 1915 |
| 43 | Ga0105240_10007726 | 3300009093 | Bacteria | 15557 |
| 44 | Ga0105240_10246201 | 3300009093 | Bacteria | 2070 |
| 45 | Ga0111539_10027575 | 3300009094 | Bacteria | 6936 |
| 46 | Ga0111539_10039152 | 3300009094 | Bacteria | 5715 |
| 47 | Ga0111539_10240777 | 3300009094 | Bacteria | 2106 |
| 48 | Ga0114129_10003202 | 3300009147 | Bacteria | 22962 |
| 49 | Ga0105241_10001049 | 3300009174 | Bacteria | 21064 |
| 50 | Ga0105237_10004993 | 3300009545 | Bacteria | 15118 |
| 51 | Ga0105238_10006675 | 3300009551 | Bacteria | 11510 |
| 52 | Ga0105238_10085854 | 3300009551 | Bacteria | 3135 |
| 53 | Ga0105238_10151658 | 3300009551 | Bacteria | 2293 |
| 54 | Ga0105028_102726 | 3300009993 | Bacteria | 1857 |
| 55 | Ga0105239_10004248 | 3300010375 | Bacteria | 17202 |
| 56 | Ga0105239_10592790 | 3300010375 | Bacteria | 1264 |
| 57 | Ga0157371_10061221 | 3300013102 | Bacteria | 2669 |
| 58 | Ga0163162_10140119 | 3300013306 | Bacteria | 2531 |
| 59 | Ga0157372_10053203 | 3300013307 | Bacteria | 4511 |
| 60 | Ga0157375_10093141 | 3300013308 | Bacteria | 3078 |
| 61 | Ga0163163_10002230 | 3300014325 | Bacteria | 16311 |
| 62 | Ga0157377_10208342 | 3300014745 | Bacteria | 1245 |
| 63 | Ga0157379_10222313 | 3300014968 | Bacteria | 1711 |
| 64 | Ga0182006_1003659 | 3300015261 | Bacteria | 7804 |
| 65 | Ga0163161_10036293 | 3300017792 | Bacteria | 3530 |
| 66 | Ga0209257_1000046 | 3300025304 | Bacteria | 477765 |
| 67 | Ga0209257_1001023 | 3300025304 | Bacteria | 37638 |
| 68 | Ga0207645_10022734 | 3300025907 | Bacteria | 4076 |
| 69 | Ga0207705_10390114 | 3300025909 | Bacteria | 1076 |
| 70 | Ga0207654_10154634 | 3300025911 | Bacteria | 1476 |
| 71 | Ga0207707_10179460 | 3300025912 | Bacteria | 1849 |
| 72 | Ga0207695_10002426 | 3300025913 | Bacteria | 27619 |
| 73 | Ga0207695_10010727 | 3300025913 | Bacteria | 11181 |
| 74 | Ga0207671_10005332 | 3300025914 | Bacteria | 11902 |
| 75 | Ga0207671_10037115 | 3300025914 | Bacteria | 3613 |
| 76 | Ga0207662_10141261 | 3300025918 | Bacteria | 1525 |
| 77 | Ga0207681_10061040 | 3300025923 | Bacteria | 2590 |
| 78 | Ga0207681_10078034 | 3300025923 | Bacteria | 2330 |
| 79 | Ga0207694_10004339 | 3300025924 | Bacteria | 11075 |
| 80 | Ga0207694_10055276 | 3300025924 | Bacteria | 3082 |
| 81 | Ga0207659_10057403 | 3300025926 | Bacteria | 2791 |
| 82 | Ga0207706_10001892 | 3300025933 | Bacteria | 20556 |
| 83 | Ga0207670_10002574 | 3300025936 | Bacteria | 9543 |
| 84 | Ga0207711_10348342 | 3300025941 | Bacteria | 1371 |
| 85 | Ga0207679_10003217 | 3300025945 | Bacteria | 10072 |
| 86 | Ga0207667_10000036 | 3300025949 | Bacteria | 297966 |
| 87 | Ga0207667_10002595 | 3300025949 | Bacteria | 22425 |
| 88 | Ga0207712_10013658 | 3300025961 | Bacteria | 5207 |
| 89 | Ga0207712_10243076 | 3300025961 | Unclassified | 1451 |
| 90 | Ga0207668_10008492 | 3300025972 | Bacteria | 6126 |
| 91 | Ga0207640_10290927 | 3300025981 | Bacteria | 1288 |
| 92 | Ga0207658_10013800 | 3300025986 | Bacteria | 5526 |
| 93 | Ga0207658_10035619 | 3300025986 | Bacteria | 3566 |
| 94 | Ga0207703_10001339 | 3300026035 | Bacteria | 22554 |
| 95 | Ga0207703_10365764 | 3300026035 | Bacteria | 1331 |
| 96 | Ga0207678_10006374 | 3300026067 | Bacteria | 10476 |
| 97 | Ga0207708_10067101 | 3300026075 | Bacteria | 2744 |
| 98 | Ga0207641_10000565 | 3300026088 | Bacteria | 41360 |
| 99 | Ga0207641_10243340 | 3300026088 | Bacteria | 1677 |
| 100 | Ga0207676_10009113 | 3300026095 | Bacteria | 7068 |
| 101 | Ga0207674_10243364 | 3300026116 | Bacteria | 1746 |
| 102 | Ga0207674_10360061 | 3300026116 | Bacteria | 1406 |
| 103 | Ga0207675_100001200 | 3300026118 | Bacteria | 25839 |
| 104 | Ga0207675_100467704 | 3300026118 | Bacteria | 1252 |
| 105 | Ga0207698_10199712 | 3300026142 | Bacteria | 1789 |
| 106 | Ga0207428_10126543 | 3300027907 | Bacteria | 1956 |
| 107 | Ga0207428_10164026 | 3300027907 | Bacteria | 1686 |
| 108 | Ga0268266_10000036 | 3300028379 | Bacteria | 348910 |
| 109 | Ga0268265_10001919 | 3300028380 | Bacteria | 16522 |
| 110 | Ga0268265_10146963 | 3300028380 | Bacteria | 1982 |
| 111 | Ga0268264_10000592 | 3300028381 | Bacteria | 44004 |
| 112 | Ga0307517_10029618 | 3300028786 | Bacteria | 6452 |
| 113 | Ga0307517_10096913 | 3300028786 | Bacteria | 2359 |
| 114 | Ga0307515_10000104 | 3300028794 | Bacteria | 198238 |
| 115 | Ga0265332_10000128 | 3300031238 | Bacteria | 63543 |
| 116 | Ga0307513_10001541 | 3300031456 | Bacteria | 33038 |
| 117 | Ga0307513_10006834 | 3300031456 | Bacteria | 14866 |
| 118 | Ga0307513_10146322 | 3300031456 | Bacteria | 2280 |
| 119 | Ga0307408_100026080 | 3300031548 | Bacteria | 4009 |
| 120 | Ga0307408_100055647 | 3300031548 | Bacteria | 2865 |
| 121 | Ga0316577_10017603 | 3300031733 | Bacteria | 3947 |
| 122 | Ga0307412_10108462 | 3300031911 | Bacteria | 1978 |
| 123 | Ga0307416_100021805 | 3300032002 | Bacteria | 4608 |
| 124 | Ga0307416_100336811 | 3300032002 | Bacteria | 1519 |
| 125 | Ga0307414_10006972 | 3300032004 | Bacteria | 6332 |
| 126 | Ga0307415_100429960 | 3300032126 | Bacteria | 1136 |
| 127 | Ga0316582_0215371 | 3300036647 | Bacteria | 1313 |
| 128 | Ga0316584_0169825 | 3300036712 | Bacteria | 1618 |
| 129 | Ga0395905_0000797 | 3300037471 | Bacteria | 41364 |
| 130 | Ga0395905_0106027 | 3300037471 | Bacteria | 2639 |
| 131 | Ga0451793_1604783 | 3300041452 | Bacteria | 1109 |
| 132 | Ga0451802_0574989 | 3300041460 | Bacteria | 5474 |
| 133 | Ga0451807_2151541 | 3300041486 | Bacteria | 2806 |
| 134 | Ga0451841_0560066 | 3300041498 | Bacteria | 1409 |
| 135 | Ga0451843_0054589 | 3300041509 | Bacteria | 1072 |
| 136 | Ga0439457_029087 | 3300042014 | Bacteria | 1224 |
| 137 | Ga0466963_0138973 | 3300044694 | Unclassified | 1682 |
| 138 | Ga0466957_0043151 | 3300044842 | Bacteria | 2730 |
| 139 | Ga0466959_0003269 | 3300045049 | Bacteria | 10559 |
| 140 | Ga0466958_0018856 | 3300045836 | Bacteria | 4009 |
| 141 | Ga0495617_017502 | 3300046452 | Bacteria | 2422 |
| 142 | Ga0495650_0000083 | 3300046471 | Bacteria | 237725 |
| 143 | Ga0495582_0160997 | 3300046473 | Unclassified | 1276 |
| 144 | Ga0495583_0000891 | 3300046506 | Bacteria | 35790 |
| 145 | Ga0495583_0011367 | 3300046506 | Bacteria | 5115 |
| 146 | Ga0495631_0011308 | 3300046518 | Bacteria | 4394 |
| 147 | Ga0495663_0001165 | 3300046525 | Bacteria | 8465 |
| 148 | Ga0495663_0002871 | 3300046525 | Bacteria | 5097 |
| 149 | Ga0495633_0048202 | 3300046558 | Bacteria | 2012 |
| 150 | Ga0495625_0005282 | 3300046660 | Bacteria | 11853 |
| 151 | Ga0495671_0004364 | 3300046692 | Bacteria | 8480 |
| 152 | Ga0495600_0001829 | 3300046809 | Bacteria | 11922 |
| 153 | Ga0495636_0059172 | 3300047318 | Bacteria | 1616 |
| 154 | Ga0495636_0059400 | 3300047318 | Bacteria | 1613 |
| 155 | Ga0495687_013720 | 3300047443 | Bacteria | 4208 |
| 156 | Ga0495685_041657 | 3300047447 | Bacteria | 1569 |
| 157 | Ga0496110_0579960 | 3300048913 | Bacteria | 1018 |
| 158 | Ga0496114_0000254 | 3300048917 | Bacteria | 38642 |
| 159 | Ga0496116_0002804 | 3300048919 | Bacteria | 17905 |
| 160 | Ga0496121_0037359 | 3300048924 | Bacteria | 4315 |
| 161 | Ga0496122_0000355 | 3300048925 | Bacteria | 98786 |
| 162 | Ga0496123_0001332 | 3300048926 | Bacteria | 34880 |
| 163 | Ga0496123_0005377 | 3300048926 | Bacteria | 12910 |
| 164 | Ga0496125_0000228 | 3300048928 | Bacteria | 114539 |
| 165 | Ga0496125_0001329 | 3300048928 | Bacteria | 36515 |
| 166 | Ga0496125_0048197 | 3300048928 | Bacteria | 3555 |
| 167 | Ga0496126_0024463 | 3300048929 | Bacteria | 5831 |
| 168 | Ga0496126_0159907 | 3300048929 | Bacteria | 1925 |
| 169 | Ga0501047_0235940 | 3300049581 | Bacteria | 1681 |
| 170 | nmdc:mga05p37_4538_c1 | 3300050507 | Bacteria | 16229 |
| 171 | nmdc:mga05p37_762091_c1 | 3300050507 | Bacteria | 1065 |
| 172 | nmdc:mga05p37_780069_c1 | 3300050507 | Bacteria | 1049 |
| 173 | nmdc:mga09592_2401_c1 | 3300050508 | Bacteria | 15130 |
| 174 | nmdc:mga0qj67_1236_c1 | 3300050509 | Bacteria | 17839 |
| 175 | nmdc:mga0qj67_17122_c1 | 3300050509 | Bacteria | 5508 |
| 176 | nmdc:mga06r32_1631_c1 | 3300050510 | Bacteria | 20242 |
| 177 | nmdc:mga06r32_27516_c1 | 3300050510 | Bacteria | 5313 |
| 178 | nmdc:mga08y16_442278_c1 | 3300050511 | Bacteria | 1327 |
| 179 | nmdc:mga08y16_44246_c1 | 3300050511 | Bacteria | 4664 |
| 180 | nmdc:mga08y16_65199_c1 | 3300050511 | Bacteria | 3803 |
| 181 | nmdc:mga0sz30_42985_c1 | 3300050516 | Bacteria | 1902 |
| 182 | Ga0500583_0014887 | 3300053092 | Bacteria | 3062 |
| 183 | Ga0500595_000912 | 3300053119 | Bacteria | 16841 |
| 184 | Ga0500658_0002016 | 3300053134 | Bacteria | 7931 |
| 185 | Ga0500588_0012603 | 3300053146 | Bacteria | 2101 |
| 186 | Ga0500616_0000011 | 3300053153 | Bacteria | 732880 |
| 187 | Ga0500622_0003128 | 3300053156 | Bacteria | 11370 |
| 188 | Ga0500622_0013605 | 3300053156 | Bacteria | 4386 |
| 189 | Ga0500636_0000795 | 3300053177 | Bacteria | 16998 |
| 190 | 2521558247 | 2521172590 | Bacteria | 5047645 |
| 191 | 2553007528 | 2551306416 | Bacteria | 6152985 |
| 192 | 2572253499 | 2571042365 | Bacteria | 3289345 |
| 193 | 2626634955 | 2626541554 | Bacteria | 7741902 |
| 194 | 2643896073 | 2643221577 | Bacteria | 3710843 |
| 195 | 2643913730 | 2643221581 | Bacteria | 3893603 |
| 196 | 2644478280 | 2643221685 | Bacteria | 3673288 |
| 197 | 2819614602 | 2818991449 | Bacteria | 5518009 |
| 198 | 2904440968 | 2904439833 | Bacteria | 5931679 |
| 199 | 2904532098 | 2904530477 | Bacteria | 5876334 |
| 200 | 2904587673 | 2904584206 | Bacteria | 6028872 |
| 201 | 2904590167 | 2904589729 | Bacteria | 6113573 |
| 202 | 2904602451 | 2904601388 | Bacteria | 5884906 |
| 203 | 2919046752 | 2919046199 | Bacteria | 5567169 |
| 204 | 2919080049 | 2919079590 | Bacteria | 5946433 |
| 205 | 2923511891 | 2923510766 | Bacteria | 5926163 |
| 206 | 2928131441 | 2928130867 | Bacteria | 5467269 |
| 207 | 2941476891 | 2941475908 | Bacteria | 4145589 |
| 208 | 2987606936 | 2987605356 | Bacteria | 4187822 |
| 209 | Ga0500637_0003529 | |||
| 210 | rootH1_10251723 | |||
| 211 | Ga0055531_10016167 | |||
| 212 | Ga0070690_100108563 | |||
| 213 | Ga0070689_100019748 | |||
| 214 | Ga0070687_100045488 | |||
| 215 | Ga0070668_100006134 | |||
| 216 | Ga0070674_100152922 | |||
| 217 | Ga0070667_100294264 | |||
| 218 | Ga0070700_100138730 | |||
| 219 | Ga0070694_100024797 | |||
| 220 | Ga0070663_100018114 | |||
| 221 | Ga0070662_100011124 | |||
| 222 | Ga0070681_10153286 | |||
| 223 | Ga0070685_10115639 | |||
| 224 | Ga0070679_100213681 | |||
| 225 | Ga0070686_100018840 | |||
| 226 | Ga0070665_100000049 | |||
| 227 | Ga0068855_100000046 | |||
| 228 | Ga0068855_100043440 | |||
| 229 | Ga0070664_100019057 | |||
| 230 | Ga0068856_100578998 | |||
| 231 | Ga0068852_100010496 | |||
| 232 | Ga0068864_100006687 | |||
| 233 | Ga0068861_100000338 | |||
| 234 | Ga0068861_100056636 | |||
| 235 | Ga0068861_100233329 | |||
| 236 | Ga0068851_10103596 | |||
| 237 | Ga0068870_10079640 | |||
| 238 | Ga0068863_100004261 | |||
| 239 | Ga0068863_100062260 | |||
| 240 | Ga0068860_100000546 | |||
| 241 | Ga0068862_100000642 | |||
| 242 | Ga0075365_10168122 | |||
| 243 | Ga0075364_10219997 | |||
| 244 | Ga0075428_100007932 | |||
| 245 | Ga0075428_100208960 | |||
| 246 | Ga0075430_100000595 | |||
| 247 | Ga0075430_100004583 | |||
| 248 | Ga0075431_100011193 | |||
| 249 | Ga0075429_100000989 | |||
| 250 | Ga0075429_100168991 | |||
| 251 | Ga0105240_10007726 | |||
| 252 | Ga0105240_10246201 | |||
| 253 | Ga0111539_10027575 | |||
| 254 | Ga0111539_10039152 | |||
| 255 | Ga0111539_10240777 | |||
| 256 | Ga0114129_10003202 | |||
| 257 | Ga0105241_10001049 | |||
| 258 | Ga0105237_10004993 | |||
| 259 | Ga0105238_10006675 | |||
| 260 | Ga0105238_10085854 | |||
| 261 | Ga0105238_10151658 | |||
| 262 | Ga0105028_102726 | |||
| 263 | Ga0105239_10004248 | |||
| 264 | Ga0105239_10592790 | |||
| 265 | Ga0157371_10061221 | |||
| 266 | Ga0163162_10140119 | |||
| 267 | Ga0157372_10053203 | |||
| 268 | Ga0157375_10093141 | |||
| 269 | Ga0163163_10002230 | |||
| 270 | Ga0157377_10208342 | |||
| 271 | Ga0157379_10222313 | |||
| 272 | Ga0182006_1003659 | |||
| 273 | Ga0163161_10036293 | |||
| 274 | Ga0209257_1000046 | |||
| 275 | Ga0209257_1001023 | |||
| 276 | Ga0207645_10022734 | |||
| 277 | Ga0207705_10390114 | |||
| 278 | Ga0207654_10154634 | |||
| 279 | Ga0207707_10179460 | |||
| 280 | Ga0207695_10002426 | |||
| 281 | Ga0207695_10010727 | |||
| 282 | Ga0207671_10005332 | |||
| 283 | Ga0207671_10037115 | |||
| 284 | Ga0207662_10141261 | |||
| 285 | Ga0207681_10061040 | |||
| 286 | Ga0207681_10078034 | |||
| 287 | Ga0207694_10004339 | |||
| 288 | Ga0207694_10055276 | |||
| 289 | Ga0207659_10057403 | |||
| 290 | Ga0207706_10001892 | |||
| 291 | Ga0207670_10002574 | |||
| 292 | Ga0207711_10348342 | |||
| 293 | Ga0207679_10003217 | |||
| 294 | Ga0207667_10000036 | |||
| 295 | Ga0207667_10002595 | |||
| 296 | Ga0207712_10013658 | |||
| 297 | Ga0207712_10243076 | |||
| 298 | Ga0207668_10008492 | |||
| 299 | Ga0207640_10290927 | |||
| 300 | Ga0207658_10013800 | |||
| 301 | Ga0207658_10035619 | |||
| 302 | Ga0207703_10001339 | |||
| 303 | Ga0207703_10365764 | |||
| 304 | Ga0207678_10006374 | |||
| 305 | Ga0207708_10067101 | |||
| 306 | Ga0207641_10000565 | |||
| 307 | Ga0207641_10243340 | |||
| 308 | Ga0207676_10009113 | |||
| 309 | Ga0207674_10243364 | |||
| 310 | Ga0207674_10360061 | |||
| 311 | Ga0207675_100001200 | |||
| 312 | Ga0207675_100467704 | |||
| 313 | Ga0207698_10199712 | |||
| 314 | Ga0207428_10126543 | |||
| 315 | Ga0207428_10164026 | |||
| 316 | Ga0268266_10000036 | |||
| 317 | Ga0268265_10001919 | |||
| 318 | Ga0268265_10146963 | |||
| 319 | Ga0268264_10000592 | |||
| 320 | Ga0307517_10029618 | |||
| 321 | Ga0307517_10096913 | |||
| 322 | Ga0307515_10000104 | |||
| 323 | Ga0265332_10000128 | |||
| 324 | Ga0307513_10001541 | |||
| 325 | Ga0307513_10006834 | |||
| 326 | Ga0307513_10146322 | |||
| 327 | Ga0307408_100026080 | |||
| 328 | Ga0307408_100055647 | |||
| 329 | Ga0316577_10017603 | |||
| 330 | Ga0307412_10108462 | |||
| 331 | Ga0307416_100021805 | |||
| 332 | Ga0307416_100336811 | |||
| 333 | Ga0307414_10006972 | |||
| 334 | Ga0307415_100429960 | |||
| 335 | Ga0316582_0215371 | |||
| 336 | Ga0316584_0169825 | |||
| 337 | Ga0395905_0000797 | |||
| 338 | Ga0395905_0106027 | |||
| 339 | Ga0451793_1604783 | |||
| 340 | Ga0451802_0574989 | |||
| 341 | Ga0451807_2151541 | |||
| 342 | Ga0451841_0560066 | |||
| 343 | Ga0451843_0054589 | |||
| 344 | Ga0439457_029087 | |||
| 345 | Ga0466963_0138973 | |||
| 346 | Ga0466957_0043151 | |||
| 347 | Ga0466959_0003269 | |||
| 348 | Ga0466958_0018856 | |||
| 349 | Ga0495617_017502 | |||
| 350 | Ga0495650_0000083 | |||
| 351 | Ga0495582_0160997 | |||
| 352 | Ga0495583_0000891 | |||
| 353 | Ga0495583_0011367 | |||
| 354 | Ga0495631_0011308 | |||
| 355 | Ga0495663_0001165 | |||
| 356 | Ga0495663_0002871 | |||
| 357 | Ga0495633_0048202 | |||
| 358 | Ga0495625_0005282 | |||
| 359 | Ga0495671_0004364 | |||
| 360 | Ga0495600_0001829 | |||
| 361 | Ga0495636_0059172 | |||
| 362 | Ga0495636_0059400 | |||
| 363 | Ga0495687_013720 | |||
| 364 | Ga0495685_041657 | |||
| 365 | Ga0496110_0579960 | |||
| 366 | Ga0496114_0000254 | |||
| 367 | Ga0496116_0002804 | |||
| 368 | Ga0496121_0037359 | |||
| 369 | Ga0496122_0000355 | |||
| 370 | Ga0496123_0001332 | |||
| 371 | Ga0496123_0005377 | |||
| 372 | Ga0496125_0000228 | |||
| 373 | Ga0496125_0001329 | |||
| 374 | Ga0496125_0048197 | |||
| 375 | Ga0496126_0024463 | |||
| 376 | Ga0496126_0159907 | |||
| 377 | Ga0501047_0235940 | |||
| 378 | nmdc:mga05p37_4538_c1 | |||
| 379 | nmdc:mga05p37_762091_c1 | |||
| 380 | nmdc:mga05p37_780069_c1 | |||
| 381 | nmdc:mga09592_2401_c1 | |||
| 382 | nmdc:mga0qj67_1236_c1 | |||
| 383 | nmdc:mga0qj67_17122_c1 | |||
| 384 | nmdc:mga06r32_1631_c1 | |||
| 385 | nmdc:mga06r32_27516_c1 | |||
| 386 | nmdc:mga08y16_442278_c1 | |||
| 387 | nmdc:mga08y16_44246_c1 | |||
| 388 | nmdc:mga08y16_65199_c1 | |||
| 389 | nmdc:mga0sz30_42985_c1 | |||
| 390 | Ga0500583_0014887 | |||
| 391 | Ga0500595_000912 | |||
| 392 | Ga0500658_0002016 | |||
| 393 | Ga0500588_0012603 | |||
| 394 | Ga0500616_0000011 | |||
| 395 | Ga0500622_0003128 | |||
| 396 | Ga0500622_0013605 | |||
| 397 | Ga0500636_0000795 | |||
| 398 | 2521558247 | |||
| 399 | 2553007528 | |||
| 400 | 2572253499 | |||
| 401 | 2626634955 | |||
| 402 | 2643896073 | |||
| 403 | 2643913730 | |||
| 404 | 2644478280 | |||
| 405 | 2819614602 | |||
| 406 | 2904440968 | |||
| 407 | 2904532098 | |||
| 408 | 2904587673 | |||
| 409 | 2904590167 | |||
| 410 | 2904602451 | |||
| 411 | 2919046752 | |||
| 412 | 2919080049 | |||
| 413 | 2923511891 | |||
| 414 | 2928131441 | |||
| 415 | 2941476891 | |||
| 416 | 2987606936 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6znx-assembly1.cif.gz_A | ribokinase from thermus species | 0.948 | 5 | 254 |
| 8cqx-assembly1.cif.gz_A | ribokinase from t.sp mutant a92g | 0.931 | 5 | 253 |
| 1rk2-assembly2.cif.gz_C | e. coli ribokinase complexed with ribose and adp, solved in space group p212121 | 0.9296 | 5 | 254 |
| 4xda-assembly1.cif.gz_A | vibrio cholerae o395 ribokinase complexed with ribose, adp and sodium ion. | 0.9205 | 1 | 254 |
| 6znx-assembly1.cif.gz_D-3 | ribokinase from thermus species | 0.904 | 5 | 251 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 6iltB00 | Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase | 0.9086 | 5 | 254 | 3.40.1190.20 |
| af_Q19133_1_311_3.40.1190.20 | Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase | 0.9015 | 5 | 251 | 3.40.1190.20 |
| af_O60116_1_317_3.40.1190.20 | Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase | 0.8953 | 5 | 254 | 3.40.1190.20 |
| af_Q4E4K4_7_329_3.40.1190.20 | Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase | 0.8925 | 5 | 248 | 3.40.1190.20 |
| 1vm7B00 | Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase | 0.8883 | 1 | 254 | 3.40.1190.20 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A1F4KIM0-F1-model_v4 | Ribokinase (RK) (EC 2.7.1.15) | 0.9731 | 3 | 271 |
GO:0004747
GO:0005524 GO:0005829 GO:0019303 GO:0046872 |
| AF-A0A4Q3JEF2-F1-model_v4 | deleted | 0.9688 | 1 | 153 |
|
| AF-A0A1Y0N3N0-F1-model_v4 | Ribokinase (RK) (EC 2.7.1.15) | 0.9652 | 3 | 271 |
GO:0004747
GO:0005524 GO:0005829 GO:0019303 GO:0046872 |
| AF-A0A371K5Q6-F1-model_v4 | Ribokinase (RK) (EC 2.7.1.15) | 0.9602 | 1 | 255 |
GO:0004747
GO:0005524 GO:0005829 GO:0019303 GO:0046872 |
| AF-A0A355YAB5-F1-model_v4 | Ribokinase | 0.9588 | 3 | 203 |
GO:0004747
GO:0005524 GO:0005829 GO:0006014 GO:0046872 |