F318371

General Info

Members Datasets Scaffolds Average Seq Length
208 159 416 295

Family's Representative Sequence

Representative Sequence 3300049575|Ga0501039_0109345|Ga0501039_0109345_88_1125
Length 345
Sequence LNFSASNGAIAFMPFSISGSQLKPDGNSKFARRRCGAVTLREGAAELHNAAMFDWNDLKFFLAVARHGSTIAAGKALRVSQSTVHRRLSELEGRIGRKLVTRTVAGYRLTEFGTALLPYAERVEASVGDFERHLTGIERDQSGVIRVTCPEPIVQRMTPLIERFHARHPKLRVEFVMSDRYLDLLKGEADVAFRSGDTDDDLVGRKIADSIWAVYASRTYIERHGKPDRVEDLSHHSLVSFDESLSKHRVVTWLKTVAPDAKIAARNNSVLGLVYAVKSGLGVGPLPTAIADGEQDLVRVLAPIPELARSWRLLTHPDLRRTPRVAAFFDFIVGEREALKTILTG

Samples

Sample ID Description Type Environment
1 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
28 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
29 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
75 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
78 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
79 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
80 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
81 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
82 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
85 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
86 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
87 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
88 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
89 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
90 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
91 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
94 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
95 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
96 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
99 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
100 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
101 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
102 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
103 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
104 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
105 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
106 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
107 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
108 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
111 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
112 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
113 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
114 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
115 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
116 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
117 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
118 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
128 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
129 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
130 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
131 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
132 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
133 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
134 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
135 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
137 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
138 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
139 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
140 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
141 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
142 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
143 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
144 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
145 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
146 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
147 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
148 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
149 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
150 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
151 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
152 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
153 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
154 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
155 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
156 2508501127 Mesorhizobium sp. WSM2561 Isolate Nodule
157 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
158 2597489875 Mesorhizobium ciceri ca181 Isolate Unclassified
159 2856342000 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 97.12
Metatranscriptomes 0
Isolates 2.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.79
Nodule 1.92
Rhizoplane 3.37
Rhizosphere 70.67
Stem 0
Stem Tuber 0
Unclassified 1.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501039_0109345 3300049575 Bacteria 2161
2 Ga0065707_10109914 3300005295 Bacteria 2451
3 Ga0070683_100042148 3300005329 Bacteria 4203
4 Ga0070680_100013485 3300005336 Bacteria 6366
5 Ga0070691_10030426 3300005341 Bacteria 2529
6 Ga0070661_100012870 3300005344 Bacteria 5860
7 Ga0070669_100057346 3300005353 Bacteria 2857
8 Ga0070675_100467383 3300005354 Bacteria 1133
9 Ga0070703_10001949 3300005406 Bacteria 6049
10 Ga0070705_100000274 3300005440 Bacteria 31250
11 Ga0070694_100026028 3300005444 Bacteria 3789
12 Ga0070708_100375229 3300005445 Bacteria 1341
13 Ga0070681_10023376 3300005458 Bacteria 6216
14 Ga0070706_100037657 3300005467 Bacteria 4466
15 Ga0070699_100005654 3300005518 Bacteria 10947
16 Ga0070684_100104654 3300005535 Bacteria 2532
17 Ga0070697_100021357 3300005536 Bacteria 5129
18 Ga0070696_100000144 3300005546 Bacteria 39344
19 Ga0070704_100019503 3300005549 Bacteria 4357
20 Ga0068857_100043330 3300005577 Bacteria 3993
21 Ga0070702_100069151 3300005615 Bacteria 2080
22 Ga0068859_100002540 3300005617 Bacteria 18521
23 Ga0068864_100027607 3300005618 Bacteria 4795
24 Ga0068863_100114118 3300005841 Bacteria 2574
25 Ga0068863_100160316 3300005841 Bacteria 2155
26 Ga0068860_100002707 3300005843 Bacteria 18439
27 Ga0068860_100004216 3300005843 Bacteria 14734
28 Ga0068862_100001672 3300005844 Bacteria 20090
29 Ga0075365_10001044 3300006038 Bacteria 11943
30 Ga0075365_10336834 3300006038 Bacteria 1063
31 Ga0075368_10030448 3300006042 Bacteria 2090
32 Ga0075368_10031673 3300006042 Bacteria 2052
33 Ga0075363_100035206 3300006048 Unclassified 2619
34 Ga0075363_100041383 3300006048 Bacteria 2430
35 Ga0075364_10038141 3300006051 Bacteria 3113
36 Ga0075364_10050694 3300006051 Bacteria 2710
37 Ga0075364_10149814 3300006051 Bacteria 1572
38 Ga0075362_10018001 3300006177 Bacteria 2918
39 Ga0075367_10042913 3300006178 Bacteria 2648
40 Ga0075366_10072852 3300006195 Bacteria 2047
41 Ga0075366_10088405 3300006195 Bacteria 1855
42 Ga0097621_100384755 3300006237 Bacteria 1254
43 Ga0075370_10162134 3300006353 Bacteria 1312
44 Ga0075370_10262997 3300006353 Bacteria 1023
45 Ga0068871_100195556 3300006358 Bacteria 1744
46 Ga0075428_100053578 3300006844 Bacteria 4420
47 Ga0075433_10386151 3300006852 Bacteria 1236
48 Ga0068865_100093468 3300006881 Bacteria 2187
49 Ga0097620_100002540 3300006931 Bacteria 18521
50 Ga0105240_10550988 3300009093 Bacteria 1276
51 Ga0111539_10053242 3300009094 Bacteria 4817
52 Ga0111539_10442711 3300009094 Bacteria 1513
53 Ga0114129_10152977 3300009147 Bacteria 3156
54 Ga0105243_10103690 3300009148 Bacteria 2366
55 Ga0105237_10103426 3300009545 Bacteria 2840
56 Ga0105238_10070585 3300009551 Bacteria 3492
57 Ga0105238_10362162 3300009551 Bacteria 1440
58 Ga0105249_10424407 3300009553 Bacteria 1364
59 Ga0105239_10346761 3300010375 Unclassified 1676
60 Ga0105246_10202698 3300011119 Bacteria 1543
61 Ga0105246_10333868 3300011119 Bacteria 1236
62 Ga0157375_10442346 3300013308 Bacteria 1466
63 Ga0163163_10083899 3300014325 Bacteria 3192
64 Ga0163163_10319685 3300014325 Bacteria 1606
65 Ga0157376_10333386 3300014969 Bacteria 1446
66 Ga0209758_1000850 3300025297 Bacteria 42511
67 Ga0209050_1000312 3300025298 Bacteria 98756
68 Ga0209051_1004953 3300025303 Bacteria 7961
69 Ga0207653_10000587 3300025885 Bacteria 12868
70 Ga0207699_10279899 3300025906 Unclassified 1159
71 Ga0207684_10112314 3300025910 Bacteria 2333
72 Ga0207707_10269641 3300025912 Bacteria 1475
73 Ga0207671_10061028 3300025914 Bacteria 2797
74 Ga0207660_10016946 3300025917 Bacteria 4834
75 Ga0207649_10053664 3300025920 Bacteria 2506
76 Ga0207659_10190757 3300025926 Bacteria 1631
77 Ga0207706_10427574 3300025933 Bacteria 1147
78 Ga0207670_10230561 3300025936 Bacteria 1422
79 Ga0207661_10173746 3300025944 Bacteria 1877
80 Ga0207712_10008377 3300025961 Bacteria 6533
81 Ga0207708_10095062 3300026075 Bacteria 2301
82 Ga0207641_10089819 3300026088 Bacteria 2685
83 Ga0207641_10135153 3300026088 Bacteria 2219
84 Ga0207674_10006793 3300026116 Bacteria 13424
85 Ga0207675_100033948 3300026118 Bacteria 4755
86 Ga0268265_10001391 3300028380 Bacteria 20505
87 Ga0268264_10002930 3300028381 Bacteria 14828
88 Ga0268264_10007735 3300028381 Bacteria 8949
89 Ga0268264_10080718 3300028381 Bacteria 2778
90 Ga0307515_10006281 3300028794 Bacteria 23837
91 Ga0307513_10237870 3300031456 Bacteria 1629
92 Ga0307513_10364762 3300031456 Bacteria 1188
93 Ga0307509_10195314 3300031507 Bacteria 1869
94 Ga0307514_10156399 3300031649 Bacteria 1519
95 Ga0316576_10176885 3300031727 Bacteria 1610
96 Ga0316578_10193876 3300031728 Bacteria 1224
97 Ga0373923_0037681 3300035111 Bacteria 1979
98 Ga0373936_0032980 3300035113 Bacteria 2051
99 Ga0373955_0045009 3300035172 Bacteria 2380
100 Ga0373931_0028452 3300035691 Bacteria 2862
101 Ga0373927_0114240 3300035695 Bacteria 1760
102 Ga0373933_0022893 3300035724 Bacteria 3563
103 Ga0373925_0188768 3300037068 Bacteria 1634
104 Ga0451804_0503876 3300041463 Bacteria 1135
105 Ga0451833_0391750 3300041491 Bacteria 1593
106 Ga0451847_0821814 3300041503 Bacteria 1493
107 Ga0451851_0310453 3300041507 Bacteria 1377
108 Ga0495629_0066168 3300046459 Bacteria 2522
109 Ga0495638_0130300 3300046460 Bacteria 1478
110 Ga0495662_0198998 3300046476 Bacteria 988
111 Ga0495610_0041510 3300046512 Bacteria 2309
112 Ga0495610_0107708 3300046512 Bacteria 1238
113 Ga0495630_0021856 3300046517 Bacteria 4724
114 Ga0495632_0010667 3300046519 Bacteria 5420
115 Ga0495632_0169396 3300046519 Bacteria 1004
116 Ga0495643_0033025 3300046522 Bacteria 2867
117 Ga0495648_0000568 3300046524 Bacteria 39499
118 Ga0495652_0163291 3300046529 Bacteria 1727
119 Ga0495665_0159939 3300046531 Bacteria 1174
120 Ga0495640_0052035 3300046533 Bacteria 2813
121 Ga0495640_0156484 3300046533 Bacteria 1463
122 Ga0495633_0178761 3300046558 Bacteria 977
123 Ga0495667_0225974 3300046559 Bacteria 1194
124 Ga0495634_0026536 3300046642 Bacteria 4041
125 Ga0495624_0053627 3300046690 Bacteria 2545
126 Ga0495674_0005161 3300047319 Bacteria 12542
127 Ga0495687_000273 3300047443 Bacteria 68368
128 Ga0495684_0032996 3300047471 Bacteria 3976
129 Ga0496102_0010182 3300048905 Bacteria 8084
130 Ga0496103_0087027 3300048906 Bacteria 1969
131 Ga0496106_0003607 3300048909 Bacteria 11543
132 Ga0496113_0227549 3300048916 Bacteria 1487
133 Ga0496115_0025313 3300048918 Bacteria 4620
134 Ga0496115_0395432 3300048918 Bacteria 1122
135 Ga0496118_0007292 3300048921 Bacteria 11770
136 Ga0496119_0141608 3300048922 Bacteria 1298
137 Ga0496121_0027067 3300048924 Bacteria 5376
138 Ga0496126_0156842 3300048929 Bacteria 1948
139 Ga0501032_0034203 3300049569 Bacteria 3480
140 Ga0501033_0017824 3300049570 Bacteria 5361
141 Ga0501034_0014555 3300049571 Bacteria 8099
142 Ga0501034_0048941 3300049571 Bacteria 4265
143 Ga0501034_0081574 3300049571 Bacteria 3236
144 Ga0501037_0089492 3300049573 Bacteria 2227
145 Ga0501038_0040488 3300049574 Bacteria 4068
146 Ga0501039_0340886 3300049575 Bacteria 1178
147 Ga0501043_0032141 3300049579 Bacteria 4124
148 Ga0501046_0037890 3300049580 Bacteria 3873
149 Ga0501046_0049925 3300049580 Bacteria 3307
150 Ga0501047_0017743 3300049581 Bacteria 6818
151 Ga0501047_0060641 3300049581 Bacteria 3650
152 Ga0501048_0038057 3300049582 Bacteria 3453
153 Ga0501069_0045047 3300049585 Bacteria 2443
154 Ga0501069_0114815 3300049585 Bacteria 1536
155 Ga0501069_0136738 3300049585 Bacteria 1404
156 Ga0501070_0012375 3300049586 Bacteria 7197
157 Ga0501070_0096884 3300049586 Bacteria 2440
158 Ga0501070_0115167 3300049586 Bacteria 2221
159 Ga0501070_0238441 3300049586 Bacteria 1489
160 Ga0501073_0022943 3300049589 Bacteria 4488
161 Ga0501073_0027512 3300049589 Bacteria 4066
162 Ga0501073_0033210 3300049589 Bacteria 3675
163 Ga0501074_0004986 3300049590 Bacteria 9523
164 Ga0501074_0043082 3300049590 Bacteria 3266
165 Ga0501077_0300823 3300049593 Unclassified 1022
166 Ga0501080_0021309 3300049742 Bacteria 5999
167 Ga0501080_0041854 3300049742 Bacteria 4267
168 Ga0501081_0015813 3300049743 Bacteria 4981
169 Ga0501083_0004413 3300049744 Bacteria 9923
170 Ga0501035_0012823 3300049822 Bacteria 7740
171 Ga0501044_0015473 3300049823 Bacteria 8217
172 Ga0501044_0057087 3300049823 Bacteria 4006
173 nmdc:mga03683_178914_c1 3300050489 Bacteria 967
174 nmdc:mga03683_45568_c1 3300050489 Bacteria 1254
175 nmdc:mga00v17_16142_c1 3300050491 Bacteria 4206
176 nmdc:mga00v17_17138_c1 3300050491 Bacteria 4093
177 nmdc:mga00v17_289935_c1 3300050491 Bacteria 1063
178 nmdc:mga0k408_140456_c1 3300050493 Bacteria 1437
179 nmdc:mga0k408_43306_c1 3300050493 Bacteria 2594
180 nmdc:mga0k408_63455_c1 3300050493 Bacteria 2149
181 nmdc:mga0k408_80186_c1 3300050493 Bacteria 1910
182 nmdc:mga0k408_88485_c1 3300050493 Bacteria 1819
183 nmdc:mga06z11_28535_c1 3300050494 Bacteria 2679
184 nmdc:mga04h51_453_c1 3300050495 Bacteria 9862
185 nmdc:mga04h51_86998_c1 3300050495 Bacteria 1119
186 nmdc:mga05p37_498683_c1 3300050507 Bacteria 1398
187 nmdc:mga0qj67_563876_c1 3300050509 Bacteria 913
188 nmdc:mga06r32_74787_c1 3300050510 Bacteria 3285
189 nmdc:mga08y16_175824_c1 3300050511 Bacteria 2223
190 nmdc:mga08y16_201880_c1 3300050511 Bacteria 2060
191 nmdc:mga0n895_7714_c1 3300050512 Bacteria 9261
192 Ga0495601_0040289 3300053077 Bacteria 2926
193 Ga0500641_0002847 3300053096 Bacteria 6132
194 Ga0500593_032838 3300053117 Bacteria 2323
195 Ga0500658_0009033 3300053134 Bacteria 3679
196 Ga0500568_0018450 3300053139 Plasmid 3053
197 Ga0500622_0016539 3300053156 Bacteria 3941
198 Ga0500636_0054948 3300053177 Bacteria 2334
199 Ga0501084_0066356 3300054114 Bacteria 3019
200 Ga0501082_0021146 3300060353 Bacteria 5611
201 Ga0501082_0076244 3300060353 Bacteria 2890
202 Ga0501082_0202967 3300060353 Bacteria 1725
203 2509142053 2508501127 Bacteria 7037543
204 2509144947 2508501127 Bacteria 7037543
205 2509146156 2508501127 Bacteria 7037543
206 2587758546 2585428062 Bacteria 6842168
207 2597813678 2597489875 Bacteria 7010078
208 2856345811 2856342000 Bacteria 7176905
209 Ga0501039_0109345
210 Ga0065707_10109914
211 Ga0070683_100042148
212 Ga0070680_100013485
213 Ga0070691_10030426
214 Ga0070661_100012870
215 Ga0070669_100057346
216 Ga0070675_100467383
217 Ga0070703_10001949
218 Ga0070705_100000274
219 Ga0070694_100026028
220 Ga0070708_100375229
221 Ga0070681_10023376
222 Ga0070706_100037657
223 Ga0070699_100005654
224 Ga0070684_100104654
225 Ga0070697_100021357
226 Ga0070696_100000144
227 Ga0070704_100019503
228 Ga0068857_100043330
229 Ga0070702_100069151
230 Ga0068859_100002540
231 Ga0068864_100027607
232 Ga0068863_100114118
233 Ga0068863_100160316
234 Ga0068860_100002707
235 Ga0068860_100004216
236 Ga0068862_100001672
237 Ga0075365_10001044
238 Ga0075365_10336834
239 Ga0075368_10030448
240 Ga0075368_10031673
241 Ga0075363_100035206
242 Ga0075363_100041383
243 Ga0075364_10038141
244 Ga0075364_10050694
245 Ga0075364_10149814
246 Ga0075362_10018001
247 Ga0075367_10042913
248 Ga0075366_10072852
249 Ga0075366_10088405
250 Ga0097621_100384755
251 Ga0075370_10162134
252 Ga0075370_10262997
253 Ga0068871_100195556
254 Ga0075428_100053578
255 Ga0075433_10386151
256 Ga0068865_100093468
257 Ga0097620_100002540
258 Ga0105240_10550988
259 Ga0111539_10053242
260 Ga0111539_10442711
261 Ga0114129_10152977
262 Ga0105243_10103690
263 Ga0105237_10103426
264 Ga0105238_10070585
265 Ga0105238_10362162
266 Ga0105249_10424407
267 Ga0105239_10346761
268 Ga0105246_10202698
269 Ga0105246_10333868
270 Ga0157375_10442346
271 Ga0163163_10083899
272 Ga0163163_10319685
273 Ga0157376_10333386
274 Ga0209758_1000850
275 Ga0209050_1000312
276 Ga0209051_1004953
277 Ga0207653_10000587
278 Ga0207699_10279899
279 Ga0207684_10112314
280 Ga0207707_10269641
281 Ga0207671_10061028
282 Ga0207660_10016946
283 Ga0207649_10053664
284 Ga0207659_10190757
285 Ga0207706_10427574
286 Ga0207670_10230561
287 Ga0207661_10173746
288 Ga0207712_10008377
289 Ga0207708_10095062
290 Ga0207641_10089819
291 Ga0207641_10135153
292 Ga0207674_10006793
293 Ga0207675_100033948
294 Ga0268265_10001391
295 Ga0268264_10002930
296 Ga0268264_10007735
297 Ga0268264_10080718
298 Ga0307515_10006281
299 Ga0307513_10237870
300 Ga0307513_10364762
301 Ga0307509_10195314
302 Ga0307514_10156399
303 Ga0316576_10176885
304 Ga0316578_10193876
305 Ga0373923_0037681
306 Ga0373936_0032980
307 Ga0373955_0045009
308 Ga0373931_0028452
309 Ga0373927_0114240
310 Ga0373933_0022893
311 Ga0373925_0188768
312 Ga0451804_0503876
313 Ga0451833_0391750
314 Ga0451847_0821814
315 Ga0451851_0310453
316 Ga0495629_0066168
317 Ga0495638_0130300
318 Ga0495662_0198998
319 Ga0495610_0041510
320 Ga0495610_0107708
321 Ga0495630_0021856
322 Ga0495632_0010667
323 Ga0495632_0169396
324 Ga0495643_0033025
325 Ga0495648_0000568
326 Ga0495652_0163291
327 Ga0495665_0159939
328 Ga0495640_0052035
329 Ga0495640_0156484
330 Ga0495633_0178761
331 Ga0495667_0225974
332 Ga0495634_0026536
333 Ga0495624_0053627
334 Ga0495674_0005161
335 Ga0495687_000273
336 Ga0495684_0032996
337 Ga0496102_0010182
338 Ga0496103_0087027
339 Ga0496106_0003607
340 Ga0496113_0227549
341 Ga0496115_0025313
342 Ga0496115_0395432
343 Ga0496118_0007292
344 Ga0496119_0141608
345 Ga0496121_0027067
346 Ga0496126_0156842
347 Ga0501032_0034203
348 Ga0501033_0017824
349 Ga0501034_0014555
350 Ga0501034_0048941
351 Ga0501034_0081574
352 Ga0501037_0089492
353 Ga0501038_0040488
354 Ga0501039_0340886
355 Ga0501043_0032141
356 Ga0501046_0037890
357 Ga0501046_0049925
358 Ga0501047_0017743
359 Ga0501047_0060641
360 Ga0501048_0038057
361 Ga0501069_0045047
362 Ga0501069_0114815
363 Ga0501069_0136738
364 Ga0501070_0012375
365 Ga0501070_0096884
366 Ga0501070_0115167
367 Ga0501070_0238441
368 Ga0501073_0022943
369 Ga0501073_0027512
370 Ga0501073_0033210
371 Ga0501074_0004986
372 Ga0501074_0043082
373 Ga0501077_0300823
374 Ga0501080_0021309
375 Ga0501080_0041854
376 Ga0501081_0015813
377 Ga0501083_0004413
378 Ga0501035_0012823
379 Ga0501044_0015473
380 Ga0501044_0057087
381 nmdc:mga03683_178914_c1
382 nmdc:mga03683_45568_c1
383 nmdc:mga00v17_16142_c1
384 nmdc:mga00v17_17138_c1
385 nmdc:mga00v17_289935_c1
386 nmdc:mga0k408_140456_c1
387 nmdc:mga0k408_43306_c1
388 nmdc:mga0k408_63455_c1
389 nmdc:mga0k408_80186_c1
390 nmdc:mga0k408_88485_c1
391 nmdc:mga06z11_28535_c1
392 nmdc:mga04h51_453_c1
393 nmdc:mga04h51_86998_c1
394 nmdc:mga05p37_498683_c1
395 nmdc:mga0qj67_563876_c1
396 nmdc:mga06r32_74787_c1
397 nmdc:mga08y16_175824_c1
398 nmdc:mga08y16_201880_c1
399 nmdc:mga0n895_7714_c1
400 Ga0495601_0040289
401 Ga0500641_0002847
402 Ga0500593_032838
403 Ga0500658_0009033
404 Ga0500568_0018450
405 Ga0500622_0016539
406 Ga0500636_0054948
407 Ga0501084_0066356
408 Ga0501082_0021146
409 Ga0501082_0076244
410 Ga0501082_0202967
411 2509142053
412 2509144947
413 2509146156
414 2587758546
415 2597813678
416 2856345811

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

55

114

0.98

PF03466

LysR_substrate

LysR substrate binding domain

138

336

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.9392 2 89
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.9379 2 89
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9352 2 83
4ihs-assembly1.cif.gz_B crystal structure of benm_dbd/catb site 1 dna complex 0.9346 2 83
5z4z-assembly2.cif.gz_C-2 crystal structure of pacysb ntd domain with space group c2 0.9198 1 84
ID Description Score Start End Superfamily
af_P77171_5_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9832 2 81 1.10.10.10
af_P77744_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9761 3 84 1.10.10.10
af_P9WMF3_10_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9691 5 80 1.10.10.10
af_P0ACR4_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9688 3 81 1.10.10.10
af_Q57748_4_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9627 3 80 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1H0TI75-F1-model_v4 Regulatory helix-turn-helix protein, lysR family 0.8902 3 78 GO:0003677
GO:0003700
AF-A0A0Q7E443-F1-model_v4 HTH lysR-type domain-containing protein 0.8243 2 300 GO:0003700
GO:0006351
GO:0043565
AF-S6UII7-F1-model_v4 LysR family transcriptional regulator 0.8205 2 89 GO:0003700
AF-A0A0Q7E443-F1-model_v4 HTH lysR-type domain-containing protein 0.8022 2 300 GO:0003700
GO:0006351
GO:0043565
AF-A0A447MEU4-F1-model_v4 deleted 0.796 135 285

Map