F317606

General Info

Members Datasets Scaffolds Average Seq Length
208 148 416 369

Family's Representative Sequence

Representative Sequence 3300006028|Ga0070717_10085329|Ga0070717_100853292
Length 437
Sequence MGGVRAEAHAKISRLRKGLKSGGELQFVETFACQSGYALRNCDIAANRGHGIRKTMKLFQCQNCGQPLHFENTRCERCGLSLGYLPERETITALKPEGELADGAPQAWRALADSRTYRHCANAAHDVCNWLVPATASESYCAACRHNRIIPDLSLPENLARWRALEGAKHRLFYTLIQLRLPVETQSENPGGLAFQFLADVGPAQPAVLTGHAKGVITINLAEADDPERERRRQQMGELYRTLLGHFRHEIGHYYWDRLIRDSPHLEDFRSVFGDERQDYDSALQNYYANGAPADWSERFISAYASSHPWEDFAETWAHYFHMIDTLETAHVVGLAVSPKLPESPGAVFDFHPRETDMNRLVEAWVALTFAVNSLNRSMGLPDLYPFVLGAGAVAKLSYVHSLIKNVGAKSPSTATTASRSRREPQTGRRLPRSQSL

Samples

Sample ID Description Type Environment
1 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
23 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
51 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
56 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
57 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
73 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
74 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
75 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
76 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
77 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
78 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
79 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
80 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
83 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
84 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
85 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
86 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
87 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
88 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
89 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
90 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
91 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
92 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
93 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
94 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
95 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
96 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
97 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
98 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
99 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
100 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
101 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
102 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
103 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
104 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
105 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
106 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
107 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
108 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
109 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
110 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
111 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
112 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
113 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
114 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
115 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
116 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
117 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
118 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
119 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
120 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
121 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
122 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
123 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
124 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
125 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
126 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
127 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
128 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
129 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
130 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
133 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
134 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
135 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
136 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
137 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
138 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
139 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
140 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
141 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
142 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
143 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
144 2643221547 Pseudolabrys sp. Root1462 Isolate Unclassified
145 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
146 2842038055 Bradyrhizobium centrosematis SEMIA 424 Isolate Nodule
147 2874620515 Bradyrhizobium nanningense CCBAU 53390 Isolate Unclassified
148 3005506211 Bradyrhizobium diazoefficiens SZCCT0449 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.6
Metatranscriptomes 0
Isolates 2.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.13
Nodule 0.48
Rhizoplane 16.83
Rhizosphere 69.71
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070717_10085329 3300006028 Bacteria 2657
2 SwRhRL2b_contig_3108969 2162886007 Bacteria 24240
3 JGI25153J46596_10001946 3300003215 Bacteria 12244
4 JGI25153J46596_10002890 3300003215 Bacteria 9745
5 Ga0065704_10070270 3300005289 Bacteria 42849
6 Ga0070658_10004316 3300005327 Bacteria 11613
7 Ga0070682_100055692 3300005337 Bacteria 2485
8 Ga0070660_100016414 3300005339 Bacteria 5373
9 Ga0070689_100002302 3300005340 Bacteria 12421
10 Ga0070689_100182072 3300005340 Bacteria 1707
11 Ga0070671_100024748 3300005355 Bacteria 4918
12 Ga0070674_100075147 3300005356 Bacteria 2399
13 Ga0070688_100005976 3300005365 Bacteria 6451
14 Ga0070667_100072282 3300005367 Bacteria 2939
15 Ga0070678_100056393 3300005456 Bacteria 2873
16 Ga0070686_100035287 3300005544 Bacteria 3088
17 Ga0070693_100019780 3300005547 Bacteria 3538
18 Ga0070665_100014236 3300005548 Bacteria 7990
19 Ga0070665_100023127 3300005548 Bacteria 6261
20 Ga0068855_100192055 3300005563 Bacteria 2302
21 Ga0068852_100122530 3300005616 Bacteria 2383
22 Ga0068864_100029785 3300005618 Bacteria 4626
23 Ga0068858_100248636 3300005842 Bacteria 1689
24 Ga0068860_100197588 3300005843 Bacteria 1948
25 Ga0081455_10011891 3300005937 Bacteria 8715
26 Ga0081455_10029105 3300005937 Bacteria 5039
27 Ga0081538_10062756 3300005981 Bacteria 2116
28 Ga0075365_10039186 3300006038 Bacteria 3084
29 Ga0075365_10073953 3300006038 Bacteria 2298
30 Ga0075365_10259811 3300006038 Bacteria 1221
31 Ga0075368_10008182 3300006042 Bacteria 3716
32 Ga0070712_100194606 3300006175 Bacteria 1589
33 Ga0075369_10032123 3300006186 Bacteria 2220
34 Ga0097621_100000270 3300006237 Bacteria 35158
35 Ga0097621_100017943 3300006237 Bacteria 5390
36 Ga0097621_100018090 3300006237 Bacteria 5374
37 Ga0097621_100149283 3300006237 Bacteria 2004
38 Ga0075370_10035131 3300006353 Bacteria 2812
39 Ga0068871_100000525 3300006358 Bacteria 26274
40 Ga0068871_100035583 3300006358 Bacteria 3958
41 Ga0068871_100048817 3300006358 Bacteria 3418
42 Ga0075428_100343104 3300006844 Bacteria 1603
43 Ga0075430_100000066 3300006846 Bacteria 56729
44 Ga0075430_100083447 3300006846 Bacteria 2677
45 Ga0075431_100020674 3300006847 Bacteria 6726
46 Ga0068865_100033745 3300006881 Bacteria 3428
47 Ga0105240_10017847 3300009093 Bacteria 9548
48 Ga0111539_10582349 3300009094 Bacteria 1303
49 Ga0111539_10765204 3300009094 Bacteria 1124
50 Ga0114129_10018863 3300009147 Bacteria 9825
51 Ga0105241_10026164 3300009174 Bacteria 4339
52 Ga0105241_10064008 3300009174 Bacteria 2839
53 Ga0105241_10095411 3300009174 Bacteria 2354
54 Ga0105242_10020268 3300009176 Bacteria 5213
55 Ga0105242_10113839 3300009176 Bacteria 2311
56 Ga0105248_10030216 3300009177 Bacteria 6048
57 Ga0105238_10132001 3300009551 Bacteria 2476
58 Ga0105249_10425667 3300009553 Bacteria 1362
59 Ga0105239_10373202 3300010375 Bacteria 1612
60 Ga0157374_10082262 3300013296 Bacteria 3057
61 Ga0157374_10492017 3300013296 Bacteria 1230
62 Ga0157378_10056576 3300013297 Bacteria 3495
63 Ga0157378_10093141 3300013297 Bacteria 2742
64 Ga0163162_10013331 3300013306 Bacteria 8030
65 Ga0163162_10020714 3300013306 Bacteria 6463
66 Ga0163162_10379090 3300013306 Bacteria 1547
67 Ga0157372_10012509 3300013307 Bacteria 9043
68 Ga0157375_10012802 3300013308 Bacteria 7448
69 Ga0157375_10061420 3300013308 Bacteria 3731
70 Ga0157375_10286267 3300013308 Bacteria 1811
71 Ga0163163_10006800 3300014325 Bacteria 10031
72 Ga0157380_10186681 3300014326 Bacteria 1827
73 Ga0182008_10042330 3300014497 Bacteria 2269
74 Ga0157379_10004744 3300014968 Bacteria 11671
75 Ga0157379_10272628 3300014968 Bacteria 1539
76 Ga0157379_10273538 3300014968 Bacteria 1536
77 Ga0157376_10136347 3300014969 Bacteria 2197
78 Ga0157376_10153985 3300014969 Bacteria 2076
79 Ga0163161_10024051 3300017792 Bacteria 4300
80 Ga0163161_10248635 3300017792 Bacteria 1385
81 Ga0228598_1000198 3300024227 Bacteria 11051
82 Ga0209758_1000008 3300025297 Bacteria 1215263
83 Ga0209758_1010856 3300025297 Bacteria 5375
84 Ga0207710_10078915 3300025900 Bacteria 1524
85 Ga0207680_10106747 3300025903 Bacteria 1809
86 Ga0207680_10192919 3300025903 Bacteria 1384
87 Ga0207685_10070998 3300025905 Bacteria 1411
88 Ga0207654_10053579 3300025911 Bacteria 2329
89 Ga0207654_10056492 3300025911 Bacteria 2277
90 Ga0207654_10115003 3300025911 Bacteria 1680
91 Ga0207695_10058865 3300025913 Bacteria 3987
92 Ga0207657_10008394 3300025919 Bacteria 10484
93 Ga0207686_10018882 3300025934 Bacteria 3910
94 Ga0207686_10044507 3300025934 Bacteria 2726
95 Ga0207670_10000300 3300025936 Bacteria 29663
96 Ga0207704_10017496 3300025938 Bacteria 3718
97 Ga0207711_10050304 3300025941 Bacteria 3567
98 Ga0207711_10291365 3300025941 Bacteria 1504
99 Ga0207648_10068295 3300026089 Bacteria 3097
100 Ga0207674_10049231 3300026116 Bacteria 4311
101 Ga0207683_10005654 3300026121 Bacteria 10720
102 Ga0207683_10039509 3300026121 Bacteria 4117
103 Ga0268266_10037804 3300028379 Bacteria 4109
104 Ga0268264_10109374 3300028381 Bacteria 2418
105 Ga0268264_10169687 3300028381 Bacteria 1972
106 Ga0265325_10001434 3300031241 Bacteria 16775
107 Ga0265340_10054681 3300031247 Bacteria 1925
108 Ga0265339_10061496 3300031249 Bacteria 2021
109 Ga0307513_10015094 3300031456 Bacteria 9375
110 Ga0316575_10025536 3300031665 Bacteria 2291
111 Ga0316579_10051456 3300031691 Bacteria 1927
112 Ga0316576_10035558 3300031727 Bacteria 3556
113 Ga0307412_10190444 3300031911 Bacteria 1550
114 Ga0307416_100079782 3300032002 Bacteria 2760
115 Ga0307411_10331936 3300032005 Bacteria 1232
116 Ga0373934_0068788 3300035086 Bacteria 1415
117 Ga0373956_0021694 3300035119 Bacteria 2741
118 Ga0373943_0149658 3300035170 Bacteria 1264
119 Ga0373961_0030168 3300035241 Bacteria 1507
120 Ga0373931_0001175 3300035691 Bacteria 11166
121 Ga0373935_0201235 3300035692 Bacteria 1376
122 Ga0373927_0047568 3300035695 Bacteria 2775
123 Ga0373933_0007011 3300035724 Bacteria 6143
124 Ga0373947_0187475 3300035725 Bacteria 1349
125 Ga0373937_0032904 3300036401 Bacteria 4704
126 Ga0316582_0180360 3300036647 Bacteria 1436
127 Ga0373925_0112474 3300037068 Bacteria 2105
128 Ga0400483_015516 3300039062 Bacteria 2936
129 Ga0436360_0749070 3300039438 Bacteria 2752
130 Ga0436360_1302493 3300039438 Bacteria 5555
131 Ga0436361_1181779 3300039447 Bacteria 2351
132 Ga0495592_0170119 3300046454 Bacteria 1493
133 Ga0495651_0113674 3300046462 Bacteria 1998
134 Ga0495664_0043213 3300046477 Bacteria 2670
135 Ga0495628_0198239 3300046516 Bacteria 1513
136 Ga0495652_0063853 3300046529 Bacteria 3099
137 Ga0495609_0007942 3300046538 Bacteria 5243
138 Ga0495635_0143860 3300046663 Bacteria 1624
139 Ga0495657_0058851 3300046675 Bacteria 2550
140 Ga0495599_0114127 3300046678 Bacteria 1681
141 Ga0495613_0145172 3300046689 Bacteria 1694
142 Ga0495604_0035807 3300047317 Bacteria 3917
143 Ga0495674_0242248 3300047319 Bacteria 1486
144 Ga0495680_0042425 3300047322 Bacteria 3609
145 Ga0495675_0017164 3300047444 Bacteria 4584
146 Ga0496100_0003208 3300048903 Bacteria 8489
147 Ga0496101_0002159 3300048904 Bacteria 12016
148 Ga0496101_0284324 3300048904 Bacteria 1293
149 Ga0496102_0007341 3300048905 Bacteria 9413
150 Ga0496102_0335173 3300048905 Bacteria 1425
151 Ga0496103_0059501 3300048906 Bacteria 2373
152 Ga0496104_0000184 3300048907 Bacteria 55775
153 Ga0496104_0001050 3300048907 Bacteria 23586
154 Ga0496104_0001147 3300048907 Bacteria 22680
155 Ga0496104_0006838 3300048907 Bacteria 10052
156 Ga0496104_0008135 3300048907 Bacteria 9305
157 Ga0496104_0049120 3300048907 Bacteria 3978
158 Ga0496104_0059526 3300048907 Bacteria 3616
159 Ga0496104_0186914 3300048907 Bacteria 1983
160 Ga0496105_0000025 3300048908 Bacteria 150594
161 Ga0496105_0056189 3300048908 Bacteria 3249
162 Ga0496105_0350716 3300048908 Bacteria 1179
163 Ga0496106_0266568 3300048909 Bacteria 1371
164 Ga0496107_0011875 3300048910 Bacteria 6085
165 Ga0496108_0004289 3300048911 Bacteria 11480
166 Ga0496108_0192259 3300048911 Bacteria 1769
167 Ga0496109_0014356 3300048912 Bacteria 6892
168 Ga0496110_0016007 3300048913 Bacteria 6254
169 Ga0496110_0040115 3300048913 Bacteria 4080
170 Ga0496111_0028497 3300048914 Bacteria 3958
171 Ga0496112_0010369 3300048915 Bacteria 8450
172 Ga0496112_0037166 3300048915 Bacteria 4753
173 Ga0496112_0254290 3300048915 Bacteria 1707
174 Ga0496113_0058156 3300048916 Bacteria 2908
175 Ga0496114_0084237 3300048917 Bacteria 2691
176 Ga0496114_0140444 3300048917 Bacteria 2091
177 Ga0496114_0202093 3300048917 Bacteria 1740
178 Ga0496115_0012451 3300048918 Bacteria 6403
179 Ga0496115_0055826 3300048918 Bacteria 3173
180 Ga0496115_0078099 3300048918 Bacteria 2693
181 Ga0496119_0000244 3300048922 Bacteria 76635
182 Ga0496125_0101799 3300048928 Bacteria 2112
183 Ga0496126_0268312 3300048929 Bacteria 1417
184 Ga0501046_0102673 3300049580 Bacteria 2192
185 Ga0501047_0001018 3300049581 Bacteria 28270
186 Ga0501047_0046208 3300049581 Bacteria 4208
187 Ga0501073_0085981 3300049589 Bacteria 2187
188 Ga0501073_0110251 3300049589 Bacteria 1909
189 nmdc:mga0yw44_98579_c1 3300050492 Bacteria 1858
190 nmdc:mga0k408_46940_c1 3300050493 Bacteria 2495
191 nmdc:mga05p37_10702_c1 3300050507 Bacteria 10889
192 nmdc:mga0qj67_235_c1 3300050509 Bacteria 37732
193 nmdc:mga0qj67_299948_c1 3300050509 Bacteria 1302
194 nmdc:mga06r32_52009_c1 3300050510 Bacteria 3922
195 nmdc:mga06r32_93197_c1 3300050510 Bacteria 2946
196 Ga0495612_0046574 3300053078 Bacteria 1776
197 Ga0500595_000989 3300053119 Bacteria 15954
198 Ga0500595_001075 3300053119 Bacteria 15152
199 Ga0500642_0043184 3300053130 Bacteria 1958
200 Ga0500559_0037325 3300053136 Bacteria 2106
201 Ga0500559_0076850 3300053136 Bacteria 1512
202 Ga0500616_0029839 3300053153 Bacteria 2998
203 Ga0500627_0055692 3300053158 Bacteria 1732
204 2643757212 2643221547 Bacteria 4740017
205 2829747642 2829745981 Bacteria 5406054
206 2842038750 2842038055 Bacteria 8002051
207 2874620785 2874620515 Bacteria 8290088
208 3005507836 3005506211 Bacteria 6943378
209 Ga0070717_10085329
210 SwRhRL2b_contig_3108969
211 JGI25153J46596_10001946
212 JGI25153J46596_10002890
213 Ga0065704_10070270
214 Ga0070658_10004316
215 Ga0070682_100055692
216 Ga0070660_100016414
217 Ga0070689_100002302
218 Ga0070689_100182072
219 Ga0070671_100024748
220 Ga0070674_100075147
221 Ga0070688_100005976
222 Ga0070667_100072282
223 Ga0070678_100056393
224 Ga0070686_100035287
225 Ga0070693_100019780
226 Ga0070665_100014236
227 Ga0070665_100023127
228 Ga0068855_100192055
229 Ga0068852_100122530
230 Ga0068864_100029785
231 Ga0068858_100248636
232 Ga0068860_100197588
233 Ga0081455_10011891
234 Ga0081455_10029105
235 Ga0081538_10062756
236 Ga0075365_10039186
237 Ga0075365_10073953
238 Ga0075365_10259811
239 Ga0075368_10008182
240 Ga0070712_100194606
241 Ga0075369_10032123
242 Ga0097621_100000270
243 Ga0097621_100017943
244 Ga0097621_100018090
245 Ga0097621_100149283
246 Ga0075370_10035131
247 Ga0068871_100000525
248 Ga0068871_100035583
249 Ga0068871_100048817
250 Ga0075428_100343104
251 Ga0075430_100000066
252 Ga0075430_100083447
253 Ga0075431_100020674
254 Ga0068865_100033745
255 Ga0105240_10017847
256 Ga0111539_10582349
257 Ga0111539_10765204
258 Ga0114129_10018863
259 Ga0105241_10026164
260 Ga0105241_10064008
261 Ga0105241_10095411
262 Ga0105242_10020268
263 Ga0105242_10113839
264 Ga0105248_10030216
265 Ga0105238_10132001
266 Ga0105249_10425667
267 Ga0105239_10373202
268 Ga0157374_10082262
269 Ga0157374_10492017
270 Ga0157378_10056576
271 Ga0157378_10093141
272 Ga0163162_10013331
273 Ga0163162_10020714
274 Ga0163162_10379090
275 Ga0157372_10012509
276 Ga0157375_10012802
277 Ga0157375_10061420
278 Ga0157375_10286267
279 Ga0163163_10006800
280 Ga0157380_10186681
281 Ga0182008_10042330
282 Ga0157379_10004744
283 Ga0157379_10272628
284 Ga0157379_10273538
285 Ga0157376_10136347
286 Ga0157376_10153985
287 Ga0163161_10024051
288 Ga0163161_10248635
289 Ga0228598_1000198
290 Ga0209758_1000008
291 Ga0209758_1010856
292 Ga0207710_10078915
293 Ga0207680_10106747
294 Ga0207680_10192919
295 Ga0207685_10070998
296 Ga0207654_10053579
297 Ga0207654_10056492
298 Ga0207654_10115003
299 Ga0207695_10058865
300 Ga0207657_10008394
301 Ga0207686_10018882
302 Ga0207686_10044507
303 Ga0207670_10000300
304 Ga0207704_10017496
305 Ga0207711_10050304
306 Ga0207711_10291365
307 Ga0207648_10068295
308 Ga0207674_10049231
309 Ga0207683_10005654
310 Ga0207683_10039509
311 Ga0268266_10037804
312 Ga0268264_10109374
313 Ga0268264_10169687
314 Ga0265325_10001434
315 Ga0265340_10054681
316 Ga0265339_10061496
317 Ga0307513_10015094
318 Ga0316575_10025536
319 Ga0316579_10051456
320 Ga0316576_10035558
321 Ga0307412_10190444
322 Ga0307416_100079782
323 Ga0307411_10331936
324 Ga0373934_0068788
325 Ga0373956_0021694
326 Ga0373943_0149658
327 Ga0373961_0030168
328 Ga0373931_0001175
329 Ga0373935_0201235
330 Ga0373927_0047568
331 Ga0373933_0007011
332 Ga0373947_0187475
333 Ga0373937_0032904
334 Ga0316582_0180360
335 Ga0373925_0112474
336 Ga0400483_015516
337 Ga0436360_0749070
338 Ga0436360_1302493
339 Ga0436361_1181779
340 Ga0495592_0170119
341 Ga0495651_0113674
342 Ga0495664_0043213
343 Ga0495628_0198239
344 Ga0495652_0063853
345 Ga0495609_0007942
346 Ga0495635_0143860
347 Ga0495657_0058851
348 Ga0495599_0114127
349 Ga0495613_0145172
350 Ga0495604_0035807
351 Ga0495674_0242248
352 Ga0495680_0042425
353 Ga0495675_0017164
354 Ga0496100_0003208
355 Ga0496101_0002159
356 Ga0496101_0284324
357 Ga0496102_0007341
358 Ga0496102_0335173
359 Ga0496103_0059501
360 Ga0496104_0000184
361 Ga0496104_0001050
362 Ga0496104_0001147
363 Ga0496104_0006838
364 Ga0496104_0008135
365 Ga0496104_0049120
366 Ga0496104_0059526
367 Ga0496104_0186914
368 Ga0496105_0000025
369 Ga0496105_0056189
370 Ga0496105_0350716
371 Ga0496106_0266568
372 Ga0496107_0011875
373 Ga0496108_0004289
374 Ga0496108_0192259
375 Ga0496109_0014356
376 Ga0496110_0016007
377 Ga0496110_0040115
378 Ga0496111_0028497
379 Ga0496112_0010369
380 Ga0496112_0037166
381 Ga0496112_0254290
382 Ga0496113_0058156
383 Ga0496114_0084237
384 Ga0496114_0140444
385 Ga0496114_0202093
386 Ga0496115_0012451
387 Ga0496115_0055826
388 Ga0496115_0078099
389 Ga0496119_0000244
390 Ga0496125_0101799
391 Ga0496126_0268312
392 Ga0501046_0102673
393 Ga0501047_0001018
394 Ga0501047_0046208
395 Ga0501073_0085981
396 Ga0501073_0110251
397 nmdc:mga0yw44_98579_c1
398 nmdc:mga0k408_46940_c1
399 nmdc:mga05p37_10702_c1
400 nmdc:mga0qj67_235_c1
401 nmdc:mga0qj67_299948_c1
402 nmdc:mga06r32_52009_c1
403 nmdc:mga06r32_93197_c1
404 Ga0495612_0046574
405 Ga0500595_000989
406 Ga0500595_001075
407 Ga0500642_0043184
408 Ga0500559_0037325
409 Ga0500559_0076850
410 Ga0500616_0029839
411 Ga0500627_0055692
412 2643757212
413 2829747642
414 2842038750
415 2874620785
416 3005507836

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10005

zinc-ribbon_6

zinc-ribbon domain

58

155

0.97

PF15887

Peptidase_Mx

Putative zinc-binding metallo-peptidase

158

403

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4s1z-assembly1.cif.gz_G crystal structure of trabid nzf1 in complex with k29 linked di-ubiquitin 0.8647 2 26
3gj3-assembly1.cif.gz_B crystal structure of human rangdp-nup153znf2 complex 0.8129 2 26
4s1z-assembly1.cif.gz_G crystal structure of trabid nzf1 in complex with k29 linked di-ubiquitin 0.8 2 26
3gj8-assembly1.cif.gz_B crystal structure of human rangdp-nup153znf34 complex 0.7944 2 26
3gj4-assembly1.cif.gz_B crystal structure of human rangdp-nup153znf3 complex 0.7935 2 26
ID Description Score Start End Superfamily
af_P9WL95_126_259_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.9517 144 278 3.40.390.10
af_P9WL95_126_259_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.9174 144 278 3.40.390.10
af_P95257_21_163_3.10.420.10 Alpha Beta;Roll;Bacterial Protein-export protein SecB;SecB-like 0.46 286 337 3.10.420.10
af_Q19440_237_465_3.40.367.20 Alpha Beta;3-Layer(aba) Sandwich;Hexokinase; domain 1; 0.3359 191 283 3.40.367.20
af_H2KYL1_679_861_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.3355 180 354 3.40.390.10
ID Description Score Start End GO Terms
AF-A0A5D9C1N1-F1-model_v4 Zinc-ribbon domain-containing protein 0.9552 1 357
AF-A0A147IIS9-F1-model_v4 Zinc-ribbon domain-containing protein 0.9534 76 266
AF-A0A5D9C1N1-F1-model_v4 Zinc-ribbon domain-containing protein 0.9526 1 357
AF-A0A2U1SDP1-F1-model_v4 deleted 0.951 1 355
AF-A0A840YMW9-F1-model_v4 Zinc-ribbon domain-containing protein 0.951 72 355

Map