F314666

General Info

Members Datasets Scaffolds Average Seq Length
206 158 412 346

Family's Representative Sequence

Representative Sequence 3300005328|Ga0070676_10102752|Ga0070676_101027522
Length 383
Sequence MVNKDLMPQRVDAWIKMGTRRMSTKILLVVASLVLSVLIGLSLARGNRATQPADDKQLLIGLSLDTLKEARWQADREMFVKRATELGARVLDLSANGDDTVQISDVEKLITNGVDVLVIVPHDGRAMAKAVRMAHDAGIPVIAYDRIIRDSDLDLYVSFDNVKVGELQARYLVDHLPTRGKGRIVRLYGAKTDNNALLFKQGQDNVLAPYIERGDIVVVHEDWVEEWKPENAKRIVNAAISAHGDAFDAVLASNDGTAGGAIQALLEEGLAGKKLVTGQDAELVACQRIVNGTQAMTIYKPLKTLARNAAELAVRIAQRKVVVAPQTANNGTIDVPSVLSDVVTVTKDNMVDTVIKDGLHSFDDVYRGVPEAQRPARDRLAGQ

Samples

Sample ID Description Type Environment
1 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
37 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
42 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
90 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
92 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
93 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
94 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
95 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
96 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
97 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
98 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
99 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
100 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
101 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
102 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
103 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
104 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
105 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
106 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
107 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
108 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
109 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
110 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
111 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
112 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
113 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
114 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
115 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
116 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
117 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
118 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
119 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
120 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
121 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
122 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
123 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
124 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
125 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
126 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
127 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
128 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
129 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
139 3300049678 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought Metagenome Rhizosphere
140 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
141 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
142 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
144 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
145 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
146 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
147 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
148 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
149 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
150 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
151 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
152 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
153 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
154 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
155 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
156 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
157 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
158 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.51
Metatranscriptomes 0
Isolates 0.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.43
Nodule 0
Rhizoplane 0.97
Rhizosphere 95.15
Stem 0
Stem Tuber 0
Unclassified 3.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070676_10102752 3300005328 Bacteria 1768
2 rootH1_10043434 3300003323 Bacteria 8862
3 Ga0070658_10002536 3300005327 Bacteria 15243
4 Ga0070658_10002917 3300005327 Bacteria 14185
5 Ga0070658_10004974 3300005327 Bacteria 10833
6 Ga0070658_10010885 3300005327 Bacteria 7293
7 Ga0070683_100161314 3300005329 Bacteria 2127
8 Ga0070670_100211101 3300005331 Bacteria 1688
9 Ga0070677_10045061 3300005333 Bacteria 1758
10 Ga0068868_100299160 3300005338 Bacteria 1366
11 Ga0070660_100071922 3300005339 Bacteria 2701
12 Ga0070660_100102936 3300005339 Bacteria 2264
13 Ga0070660_100214172 3300005339 Bacteria 1564
14 Ga0070689_100356500 3300005340 Bacteria 1228
15 Ga0070675_100058906 3300005354 Bacteria 3168
16 Ga0070675_100462863 3300005354 Bacteria 1138
17 Ga0070674_100023749 3300005356 Bacteria 3973
18 Ga0070674_100301248 3300005356 Bacteria 1278
19 Ga0070673_100205003 3300005364 Bacteria 1700
20 Ga0070713_100161430 3300005436 Bacteria 2001
21 Ga0070711_100110181 3300005439 Bacteria 2019
22 Ga0070700_100017453 3300005441 Bacteria 4105
23 Ga0070708_100125120 3300005445 Unclassified 2375
24 Ga0070663_100012661 3300005455 Bacteria 5345
25 Ga0070678_100116676 3300005456 Bacteria 2098
26 Ga0070681_10038199 3300005458 Bacteria 4814
27 Ga0068867_100016870 3300005459 Bacteria 5190
28 Ga0070707_100290270 3300005468 Bacteria 1589
29 Ga0070679_100031207 3300005530 Bacteria 5263
30 Ga0070679_100244549 3300005530 Bacteria 1751
31 Ga0070672_100112322 3300005543 Bacteria 2222
32 Ga0070665_100000188 3300005548 Bacteria 110055
33 Ga0068855_100010299 3300005563 Bacteria 11277
34 Ga0068857_100114093 3300005577 Bacteria 2430
35 Ga0068852_100261490 3300005616 Bacteria 1662
36 Ga0068864_100360765 3300005618 Bacteria 1373
37 Ga0068861_100047112 3300005719 Bacteria 3253
38 Ga0068851_10024339 3300005834 Bacteria 2964
39 Ga0068870_10011895 3300005840 Bacteria 4049
40 Ga0068863_100026083 3300005841 Bacteria 5577
41 Ga0068858_100055955 3300005842 Bacteria 3646
42 Ga0068860_100079068 3300005843 Bacteria 3127
43 Ga0068860_100227965 3300005843 Bacteria 1810
44 Ga0068862_100246113 3300005844 Bacteria 1628
45 Ga0070716_100022260 3300006173 Bacteria 3347
46 Ga0070712_100139409 3300006175 Bacteria 1848
47 Ga0075428_100020634 3300006844 Bacteria 7296
48 Ga0075428_100037868 3300006844 Bacteria 5307
49 Ga0075428_100231058 3300006844 Bacteria 1996
50 Ga0075430_100024862 3300006846 Bacteria 5095
51 Ga0075429_100032125 3300006880 Bacteria 4562
52 Ga0075436_100005459 3300006914 Bacteria 8743
53 Ga0075436_100006092 3300006914 Bacteria 8279
54 Ga0099794_10011398 3300007265 Bacteria 3805
55 Ga0099794_10036401 3300007265 Unclassified 2326
56 Ga0099794_10050982 3300007265 Bacteria 1992
57 Ga0105240_10000092 3300009093 Bacteria 182449
58 Ga0111539_10021902 3300009094 Bacteria 7856
59 Ga0105245_10028598 3300009098 Bacteria 4919
60 Ga0114129_10061630 3300009147 Bacteria 5243
61 Ga0105243_10060958 3300009148 Bacteria 3015
62 Ga0105243_10483884 3300009148 Unclassified 1169
63 Ga0105242_10112673 3300009176 Bacteria 2322
64 Ga0105237_10003086 3300009545 Bacteria 20067
65 Ga0105237_10126014 3300009545 Bacteria 2555
66 Ga0105239_10190906 3300010375 Bacteria 2293
67 Ga0157374_10210283 3300013296 Bacteria 1907
68 Ga0157378_10143814 3300013297 Bacteria 2217
69 Ga0163162_10171957 3300013306 Bacteria 2291
70 Ga0157372_10239437 3300013307 Bacteria 2105
71 Ga0157375_10100329 3300013308 Bacteria 2975
72 Ga0157380_10045102 3300014326 Bacteria 3458
73 Ga0163161_10113759 3300017792 Bacteria 2026
74 Ga0213876_10102189 3300021384 Bacteria 1520
75 Ga0209050_1000212 3300025298 Bacteria 129523
76 Ga0207645_10021596 3300025907 Bacteria 4196
77 Ga0207643_10012731 3300025908 Bacteria 4548
78 Ga0207705_10001731 3300025909 Bacteria 17290
79 Ga0207705_10004446 3300025909 Bacteria 10597
80 Ga0207705_10146519 3300025909 Bacteria 1767
81 Ga0207695_10000085 3300025913 Bacteria 279047
82 Ga0207671_10005987 3300025914 Bacteria 11003
83 Ga0207693_10026172 3300025915 Bacteria 4619
84 Ga0207657_10034732 3300025919 Bacteria 4530
85 Ga0207646_10012867 3300025922 Bacteria 8020
86 Ga0207646_10244000 3300025922 Bacteria 1623
87 Ga0207650_10178427 3300025925 Bacteria 1692
88 Ga0207687_10016054 3300025927 Bacteria 4914
89 Ga0207706_10131085 3300025933 Bacteria 2205
90 Ga0207686_10101392 3300025934 Bacteria 1923
91 Ga0207669_10021631 3300025937 Bacteria 3400
92 Ga0207669_10168869 3300025937 Unclassified 1555
93 Ga0207704_10158247 3300025938 Bacteria 1608
94 Ga0207665_10000023 3300025939 Bacteria 104745
95 Ga0207665_10019810 3300025939 Bacteria 4421
96 Ga0207691_10012321 3300025940 Bacteria 8197
97 Ga0207667_10004098 3300025949 Bacteria 17907
98 Ga0207651_10081571 3300025960 Bacteria 2332
99 Ga0207677_10350669 3300026023 Bacteria 1237
100 Ga0207703_10042163 3300026035 Bacteria 3660
101 Ga0207703_10063438 3300026035 Bacteria 3030
102 Ga0207639_10052938 3300026041 Bacteria 3095
103 Ga0207678_10008276 3300026067 Bacteria 9162
104 Ga0207648_10002210 3300026089 Bacteria 21100
105 Ga0207648_10022200 3300026089 Bacteria 5702
106 Ga0207674_10122904 3300026116 Bacteria 2562
107 Ga0207675_100003905 3300026118 Bacteria 14496
108 Ga0207698_10031660 3300026142 Bacteria 3822
109 Ga0209588_1039214 3300027671 Bacteria 1527
110 Ga0209971_1005435 3300027682 Bacteria 3025
111 Ga0209974_10002106 3300027876 Bacteria 7279
112 Ga0207428_10006669 3300027907 Bacteria 10602
113 Ga0268266_10000860 3300028379 Bacteria 39511
114 Ga0265319_1041622 3300028563 Bacteria 1549
115 Ga0265338_10020887 3300028800 Bacteria 6859
116 Ga0265338_10022261 3300028800 Bacteria 6569
117 Ga0265338_10113127 3300028800 Bacteria 2181
118 Ga0265324_10031428 3300029957 Bacteria 1859
119 Ga0265330_10103048 3300031235 Bacteria 1221
120 Ga0265320_10036046 3300031240 Bacteria 2503
121 Ga0265320_10045846 3300031240 Bacteria 2146
122 Ga0265327_10005771 3300031251 Bacteria 10192
123 Ga0307408_100005415 3300031548 Bacteria 8543
124 Ga0307408_100025106 3300031548 Bacteria 4078
125 Ga0265313_10039998 3300031595 Bacteria 2322
126 Ga0265314_10030718 3300031711 Bacteria 3973
127 Ga0265314_10077287 3300031711 Bacteria 2209
128 Ga0307406_10030570 3300031901 Bacteria 3272
129 Ga0307412_10079104 3300031911 Bacteria 2267
130 Ga0307409_100115446 3300031995 Bacteria 2261
131 Ga0307416_100008884 3300032002 Bacteria 6526
132 Ga0307416_100012190 3300032002 Bacteria 5776
133 Ga0307416_100040339 3300032002 Bacteria 3625
134 Ga0307415_100251119 3300032126 Bacteria 1437
135 Ga0373926_0006385 3300035083 Bacteria 3917
136 Ga0373923_0032099 3300035111 Unclassified 2120
137 Ga0373946_0006159 3300035171 Bacteria 4346
138 Ga0373927_0000264 3300035695 Bacteria 41466
139 Ga0373927_0000896 3300035695 Bacteria 22637
140 Ga0373947_0004803 3300035725 Bacteria 7911
141 Ga0373925_0002706 3300037068 Bacteria 14053
142 Ga0373925_0008638 3300037068 Bacteria 7421
143 Ga0373925_0130250 3300037068 Unclassified 1961
144 Ga0395900_0019111 3300037418 Bacteria 6987
145 Ga0395898_0096222 3300037466 Bacteria 2844
146 Ga0395905_0000026 3300037471 Bacteria 315051
147 Ga0436365_1160114 3300039437 Bacteria 5261
148 Ga0439450_017173 3300042008 Bacteria 1505
149 Ga0439458_0007714 3300042157 Bacteria 2397
150 Ga0439464_0003239 3300042439 Bacteria 4096
151 Ga0451577_0000012 3300042876 Bacteria 575467
152 Ga0451577_0011500 3300042876 Bacteria 8364
153 Ga0451577_0019435 3300042876 Bacteria 6248
154 Ga0451577_0123036 3300042876 Bacteria 2324
155 Ga0453683_0000873 3300044673 Bacteria 28991
156 Ga0453684_0000287 3300044712 Bacteria 216926
157 Ga0451576_0012453 3300045051 Bacteria 9552
158 Ga0451576_0023945 3300045051 Bacteria 6600
159 Ga0495651_0022561 3300046462 Bacteria 4893
160 Ga0495630_0015245 3300046517 Bacteria 5608
161 Ga0495643_0000120 3300046522 Bacteria 126112
162 Ga0495586_0050938 3300046535 Bacteria 2240
163 Ga0496105_0119302 3300048908 Bacteria 2176
164 Ga0496107_0109866 3300048910 Bacteria 2026
165 Ga0501299_016567 3300049522 Bacteria 1306
166 Ga0501031_0018362 3300049568 Bacteria 4553
167 Ga0501032_0000742 3300049569 Bacteria 26486
168 Ga0501033_0057172 3300049570 Bacteria 2883
169 Ga0501034_0111928 3300049571 Bacteria 2720
170 Ga0501038_0001870 3300049574 Bacteria 19444
171 Ga0501042_0148226 3300049578 Bacteria 1692
172 Ga0501046_0005695 3300049580 Bacteria 11118
173 Ga0501047_0020229 3300049581 Bacteria 6392
174 Ga0501047_0037427 3300049581 Bacteria 4691
175 Ga0501048_0013159 3300049582 Bacteria 6140
176 Ga0501077_0060968 3300049593 Bacteria 2393
177 Ga0501248_000881 3300049678 Bacteria 1768
178 Ga0501080_0055092 3300049742 Bacteria 3704
179 Ga0501083_0002017 3300049744 Bacteria 13968
180 Ga0501083_0186846 3300049744 Bacteria 1353
181 Ga0501035_0003775 3300049822 Bacteria 14435
182 Ga0501035_0007609 3300049822 Bacteria 10119
183 Ga0501044_0008392 3300049823 Bacteria 11332
184 Ga0501044_0010903 3300049823 Bacteria 9864
185 nmdc:mga05p37_21519_c1 3300050507 Bacteria 7812
186 nmdc:mga09592_10140_c1 3300050508 Bacteria 7666
187 nmdc:mga09592_17784_c1 3300050508 Bacteria 5826
188 nmdc:mga09592_46293_c1 3300050508 Bacteria 3665
189 nmdc:mga0qj67_33120_c1 3300050509 Bacteria 4031
190 nmdc:mga0qj67_93497_c1 3300050509 Bacteria 2418
191 nmdc:mga06r32_1388_c1 3300050510 Bacteria 21877
192 nmdc:mga06r32_7406_c1 3300050510 Bacteria 9871
193 nmdc:mga08y16_21773_c1 3300050511 Bacteria 6764
194 nmdc:mga08x19_16472_c1 3300050514 Bacteria 4508
195 nmdc:mga08x19_196128_c1 3300050514 Bacteria 1383
196 nmdc:mga08x19_3938_c2 3300050514 Bacteria 6286
197 Ga0500555_000552 3300053103 Bacteria 14913
198 Ga0500616_0001095 3300053153 Bacteria 28172
199 Ga0500616_0005156 3300053153 Bacteria 8971
200 Ga0500645_001151 3300053730 Bacteria 14287
201 Ga0590071_000232 3300059421 Bacteria 16359
202 Ga0590074_005562 3300059423 Unclassified 2089
203 Ga0590075_000060 3300059424 Bacteria 27746
204 Ga0501082_0222217 3300060353 Bacteria 1643
205 Ga0530510_0044588 3300061734 Bacteria 3205
206 3006969794 3006969106 Bacteria 4739423
207 Ga0070676_10102752
208 rootH1_10043434
209 Ga0070658_10002536
210 Ga0070658_10002917
211 Ga0070658_10004974
212 Ga0070658_10010885
213 Ga0070683_100161314
214 Ga0070670_100211101
215 Ga0070677_10045061
216 Ga0068868_100299160
217 Ga0070660_100071922
218 Ga0070660_100102936
219 Ga0070660_100214172
220 Ga0070689_100356500
221 Ga0070675_100058906
222 Ga0070675_100462863
223 Ga0070674_100023749
224 Ga0070674_100301248
225 Ga0070673_100205003
226 Ga0070713_100161430
227 Ga0070711_100110181
228 Ga0070700_100017453
229 Ga0070708_100125120
230 Ga0070663_100012661
231 Ga0070678_100116676
232 Ga0070681_10038199
233 Ga0068867_100016870
234 Ga0070707_100290270
235 Ga0070679_100031207
236 Ga0070679_100244549
237 Ga0070672_100112322
238 Ga0070665_100000188
239 Ga0068855_100010299
240 Ga0068857_100114093
241 Ga0068852_100261490
242 Ga0068864_100360765
243 Ga0068861_100047112
244 Ga0068851_10024339
245 Ga0068870_10011895
246 Ga0068863_100026083
247 Ga0068858_100055955
248 Ga0068860_100079068
249 Ga0068860_100227965
250 Ga0068862_100246113
251 Ga0070716_100022260
252 Ga0070712_100139409
253 Ga0075428_100020634
254 Ga0075428_100037868
255 Ga0075428_100231058
256 Ga0075430_100024862
257 Ga0075429_100032125
258 Ga0075436_100005459
259 Ga0075436_100006092
260 Ga0099794_10011398
261 Ga0099794_10036401
262 Ga0099794_10050982
263 Ga0105240_10000092
264 Ga0111539_10021902
265 Ga0105245_10028598
266 Ga0114129_10061630
267 Ga0105243_10060958
268 Ga0105243_10483884
269 Ga0105242_10112673
270 Ga0105237_10003086
271 Ga0105237_10126014
272 Ga0105239_10190906
273 Ga0157374_10210283
274 Ga0157378_10143814
275 Ga0163162_10171957
276 Ga0157372_10239437
277 Ga0157375_10100329
278 Ga0157380_10045102
279 Ga0163161_10113759
280 Ga0213876_10102189
281 Ga0209050_1000212
282 Ga0207645_10021596
283 Ga0207643_10012731
284 Ga0207705_10001731
285 Ga0207705_10004446
286 Ga0207705_10146519
287 Ga0207695_10000085
288 Ga0207671_10005987
289 Ga0207693_10026172
290 Ga0207657_10034732
291 Ga0207646_10012867
292 Ga0207646_10244000
293 Ga0207650_10178427
294 Ga0207687_10016054
295 Ga0207706_10131085
296 Ga0207686_10101392
297 Ga0207669_10021631
298 Ga0207669_10168869
299 Ga0207704_10158247
300 Ga0207665_10000023
301 Ga0207665_10019810
302 Ga0207691_10012321
303 Ga0207667_10004098
304 Ga0207651_10081571
305 Ga0207677_10350669
306 Ga0207703_10042163
307 Ga0207703_10063438
308 Ga0207639_10052938
309 Ga0207678_10008276
310 Ga0207648_10002210
311 Ga0207648_10022200
312 Ga0207674_10122904
313 Ga0207675_100003905
314 Ga0207698_10031660
315 Ga0209588_1039214
316 Ga0209971_1005435
317 Ga0209974_10002106
318 Ga0207428_10006669
319 Ga0268266_10000860
320 Ga0265319_1041622
321 Ga0265338_10020887
322 Ga0265338_10022261
323 Ga0265338_10113127
324 Ga0265324_10031428
325 Ga0265330_10103048
326 Ga0265320_10036046
327 Ga0265320_10045846
328 Ga0265327_10005771
329 Ga0307408_100005415
330 Ga0307408_100025106
331 Ga0265313_10039998
332 Ga0265314_10030718
333 Ga0265314_10077287
334 Ga0307406_10030570
335 Ga0307412_10079104
336 Ga0307409_100115446
337 Ga0307416_100008884
338 Ga0307416_100012190
339 Ga0307416_100040339
340 Ga0307415_100251119
341 Ga0373926_0006385
342 Ga0373923_0032099
343 Ga0373946_0006159
344 Ga0373927_0000264
345 Ga0373927_0000896
346 Ga0373947_0004803
347 Ga0373925_0002706
348 Ga0373925_0008638
349 Ga0373925_0130250
350 Ga0395900_0019111
351 Ga0395898_0096222
352 Ga0395905_0000026
353 Ga0436365_1160114
354 Ga0439450_017173
355 Ga0439458_0007714
356 Ga0439464_0003239
357 Ga0451577_0000012
358 Ga0451577_0011500
359 Ga0451577_0019435
360 Ga0451577_0123036
361 Ga0453683_0000873
362 Ga0453684_0000287
363 Ga0451576_0012453
364 Ga0451576_0023945
365 Ga0495651_0022561
366 Ga0495630_0015245
367 Ga0495643_0000120
368 Ga0495586_0050938
369 Ga0496105_0119302
370 Ga0496107_0109866
371 Ga0501299_016567
372 Ga0501031_0018362
373 Ga0501032_0000742
374 Ga0501033_0057172
375 Ga0501034_0111928
376 Ga0501038_0001870
377 Ga0501042_0148226
378 Ga0501046_0005695
379 Ga0501047_0020229
380 Ga0501047_0037427
381 Ga0501048_0013159
382 Ga0501077_0060968
383 Ga0501248_000881
384 Ga0501080_0055092
385 Ga0501083_0002017
386 Ga0501083_0186846
387 Ga0501035_0003775
388 Ga0501035_0007609
389 Ga0501044_0008392
390 Ga0501044_0010903
391 nmdc:mga05p37_21519_c1
392 nmdc:mga09592_10140_c1
393 nmdc:mga09592_17784_c1
394 nmdc:mga09592_46293_c1
395 nmdc:mga0qj67_33120_c1
396 nmdc:mga0qj67_93497_c1
397 nmdc:mga06r32_1388_c1
398 nmdc:mga06r32_7406_c1
399 nmdc:mga08y16_21773_c1
400 nmdc:mga08x19_16472_c1
401 nmdc:mga08x19_196128_c1
402 nmdc:mga08x19_3938_c2
403 Ga0500555_000552
404 Ga0500616_0001095
405 Ga0500616_0005156
406 Ga0500645_001151
407 Ga0590071_000232
408 Ga0590074_005562
409 Ga0590075_000060
410 Ga0501082_0222217
411 Ga0530510_0044588
412 3006969794

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

60

320

0.95

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

57

321

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ioy-assembly2.cif.gz_B crystal structure of thermoanaerobacter tengcongensis ribose binding protein 0.9602 40 305
4zjp-assembly1.cif.gz_A structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose 0.957 37 305
1drj-assembly1.cif.gz_A probing protein-protein interactions: the ribose-binding protein in bacterial transport and chemotaxis 0.9527 38 305
1drk-assembly1.cif.gz_A probing protein-protein interactions: the ribose-binding protein in bacterial transport and chemotaxis 0.9439 38 305
4ry0-assembly1.cif.gz_A crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose 0.9429 37 304
ID Description Score Start End Superfamily
af_P37387_24_127_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9846 37 140 3.40.50.2300
af_P02925_28_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9807 41 139 3.40.50.2300
af_P37387_24_127_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9754 37 140 3.40.50.2300
af_P37387_122_310_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9754 140 306 3.50.50.60
2fn9B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9613 40 134 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A4Q1ZTX4-F1-model_v4 Ribose ABC transporter substrate-binding protein RbsB 0.9637 42 305 GO:0030246
GO:0030313
AF-A4XMF2-F1-model_v4 Monosaccharide-transporting ATPase (EC 3.6.3.17) 0.9606 31 303 GO:0016020
GO:0016787
GO:0030246
GO:0030288
AF-A0A6P2B264-F1-model_v4 Periplasmic binding protein domain-containing protein 0.9574 37 305 GO:0030246
GO:0030313
AF-A0A524AT60-F1-model_v4 D-ribose ABC transporter substrate-binding protein 0.9516 52 305 GO:0030246
GO:0030313
AF-A0A644TMP6-F1-model_v4 Ribose import binding protein RbsB 0.9467 40 305 GO:0030246
GO:0030313

Map