F312866

General Info

Members Datasets Scaffolds Average Seq Length
204 66 203 462

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0000320|Ga0451576_0000320_38103_39578
Length 491
Sequence MVARPYYSPSSGYIQQQEEKTMDQSNRYANLSLKEADLIAGGKHLLVAYKLIPAKGYGFLEVAAHVAAESSTGTNVEVSTTDDFTRGVDALVYEVDETAFGDDPVKGGGLFKVAYPVELFDPNLTDGTFNISHMWSLILGNNQGMGDHQGLRMLDFLVPECMMKHFDGPSANITNLWKVLGRSETDGGYIAGTIIKPKLGLRPEPFAKACYDFWLGGDFIKNDEPQANQPFCPMEVVMPKVAEAMDRAQQATGQAKLFSANITADYYKEMIHRGDYVLNTFAKYNSASHVAFLVDGFVTGPAGVTTARREFPDTFLHFHRAGHGAVTSYKSPMGMDPLCYMKMVRLMGASGMHTGTMGYGKMEGHGKETVLAYMLERDECQGPYFYQKWYGMKATTPIISGGMNALRLPGFFKNLGHGNVINTCGGGSFGHIDSPAAGGISLGQAYECWKSGADPIEYAKTHKEFARAFESFPKDGDKLFPGWREKLGVHK

Samples

Sample ID Description Type Environment
1 2854681122 Luteovulum sphaeroides SCJ Isolate Unclassified
2 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
3 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
4 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
5 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
6 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
7 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
8 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
9 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
10 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
11 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
12 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
13 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
14 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
15 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
16 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
17 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
18 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
19 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
20 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
21 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
22 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
23 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
24 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
25 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
26 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
27 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
28 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
29 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
30 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
31 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
32 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
33 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
34 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
35 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
36 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
37 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
38 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
39 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
40 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
41 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
42 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
43 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
44 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
45 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
46 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
47 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
48 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
49 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
50 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
51 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
52 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
53 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
54 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
55 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
57 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
58 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
59 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
60 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
61 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
62 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
63 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
65 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
66 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.25
Metatranscriptomes 12.25
Isolates 0.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.94
Rhizosphere 82.35
Stem 0
Stem Tuber 0
Unclassified 14.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265336_10000081 3300028666 Bacteria 76621
2 Ga0265324_10000018 3300029957 Bacteria 184238
3 Ga0265324_10000612 3300029957 Bacteria 24383
4 Ga0265330_10016027 3300031235 Bacteria 3463
5 Ga0265332_10002749 3300031238 Bacteria 8772
6 Ga0265328_10000953 3300031239 Bacteria 13269
7 Ga0265320_10024631 3300031240 Bacteria 3180
8 Ga0265325_10000035 3300031241 Bacteria 99051
9 Ga0265325_10001853 3300031241 Bacteria 14598
10 Ga0265331_10000138 3300031250 Bacteria 96032
11 Ga0265331_10005955 3300031250 Bacteria 7279
12 Ga0265331_10021028 3300031250 Bacteria 3342
13 Ga0265331_10045458 3300031250 Bacteria 2120
14 Ga0265327_10000294 3300031251 Bacteria 96710
15 Ga0265327_10000299 3300031251 Bacteria 96033
16 Ga0265327_10000308 3300031251 Bacteria 94808
17 Ga0265327_10000438 3300031251 Bacteria 75623
18 Ga0265327_10003539 3300031251 Bacteria 14808
19 Ga0265327_10008282 3300031251 Bacteria 7785
20 Ga0265327_10009336 3300031251 Bacteria 7094
21 Ga0265327_10009828 3300031251 Bacteria 6834
22 Ga0265327_10038079 3300031251 Bacteria 2627
23 Ga0265316_10027481 3300031344 Bacteria 4710
24 Ga0265316_10040827 3300031344 Bacteria 3718
25 Ga0265313_10001342 3300031595 Bacteria 23180
26 Ga0316575_10000429 3300031665 Bacteria 11981
27 Ga0316575_10007525 3300031665 Bacteria 3943
28 Ga0316575_10012634 3300031665 Bacteria 3145
29 Ga0316579_10004579 3300031691 Bacteria 5502
30 Ga0316579_10008057 3300031691 Bacteria 4376
31 Ga0316579_10008715 3300031691 Bacteria 4239
32 Ga0265314_10001810 3300031711 Bacteria 23057
33 Ga0265314_10003325 3300031711 Bacteria 15662
34 Ga0265314_10021368 3300031711 Bacteria 4977
35 Ga0265314_10060389 3300031711 Bacteria 2587
36 Ga0316576_10003090 3300031727 Bacteria 9705
37 Ga0316576_10012775 3300031727 Bacteria 5556
38 Ga0316576_10013455 3300031727 Bacteria 5439
39 Ga0316576_10018163 3300031727 Bacteria 4794
40 Ga0316576_10018193 3300031727 Bacteria 4791
41 Ga0316576_10028219 3300031727 Bacteria 3954
42 Ga0316576_10028469 3300031727 Bacteria 3939
43 Ga0316576_10036344 3300031727 Bacteria 3521
44 Ga0316576_10065145 3300031727 Bacteria 2677
45 Ga0316578_10007273 3300031728 Bacteria 5537
46 Ga0316578_10008737 3300031728 Bacteria 5173
47 Ga0316578_10009834 3300031728 Bacteria 4936
48 Ga0316578_10013592 3300031728 Bacteria 4322
49 Ga0316578_10051269 3300031728 Bacteria 2416
50 Ga0316577_10010510 3300031733 Bacteria 5000
51 Ga0316577_10031206 3300031733 Bacteria 2977
52 Ga0316583_10008828 3300032133 Bacteria 3635
53 Ga0316583_10023319 3300032133 Bacteria 2212
54 Ga0316583_10036083 3300032133 Bacteria 1754
55 Ga0316585_10005877 3300032137 Bacteria 3482
56 Ga0316580_10002709 3300032139 Bacteria 4925
57 Ga0316580_10029834 3300032139 Bacteria 1688
58 Ga0316593_10013210 3300032168 Bacteria 2440
59 Ga0316593_10014197 3300032168 Bacteria 2371
60 Ga0316593_10021930 3300032168 Bacteria 2001
61 Ga0316593_10041078 3300032168 Bacteria 1539
62 Ga0316593_10042190 3300032168 Bacteria 1521
63 Ga0316593_10044141 3300032168 Bacteria 1491
64 Ga0316592_1007424 3300033524 Bacteria 2142
65 Ga0316592_1016480 3300033524 Bacteria 1544
66 Ga0316586_1000127 3300033527 Bacteria 5862
67 Ga0316586_1007856 3300033527 Bacteria 1565
68 Ga0316588_1000828 3300033528 Bacteria 4663
69 Ga0316588_1003543 3300033528 Bacteria 2865
70 Ga0316588_1017179 3300033528 Bacteria 1611
71 Ga0316588_1018276 3300033528 Bacteria 1569
72 Ga0316588_1019697 3300033528 Bacteria 1522
73 Ga0316587_1006914 3300033529 Bacteria 1750
74 Ga0316587_1008819 3300033529 Bacteria 1591
75 Ga0316587_1009988 3300033529 Bacteria 1513
76 Ga0316587_1010193 3300033529 Bacteria 1501
77 Ga0316596_1018396 3300033541 Bacteria 1765
78 Ga0316596_1021463 3300033541 Bacteria 1646
79 Ga0316596_1023571 3300033541 Bacteria 1578
80 Ga0316596_1026192 3300033541 Bacteria 1502
81 Ga0316596_1026329 3300033541 Bacteria 1499
82 Ga0316596_1027416 3300033541 Bacteria 1470
83 Ga0373952_0000345 3300035092 Bacteria 7845
84 Ga0316574_0018572 3300035398 Bacteria 4089
85 Ga0316574_0041966 3300035398 Bacteria 2821
86 Ga0316574_0054308 3300035398 Bacteria 2502
87 Ga0316582_0000277 3300036647 Bacteria 17504
88 Ga0316582_0011276 3300036647 Bacteria 4935
89 Ga0316582_0021281 3300036647 Bacteria 3828
90 Ga0316582_0051500 3300036647 Bacteria 2612
91 Ga0316582_0084942 3300036647 Bacteria 2073
92 Ga0316582_0088624 3300036647 Bacteria 2033
93 Ga0316582_0130664 3300036647 Bacteria 1686
94 Ga0316584_0018993 3300036712 Bacteria 4966
95 Ga0316584_0034745 3300036712 Bacteria 3737
96 Ga0316584_0040177 3300036712 Bacteria 3485
97 Ga0316584_0057015 3300036712 Bacteria 2924
98 Ga0316584_0066964 3300036712 Bacteria 2692
99 Ga0316584_0075268 3300036712 Bacteria 2531
100 Ga0316584_0159763 3300036712 Bacteria 1674
101 Ga0400484_29981 3300038725 Bacteria 23426
102 Ga0400490_16854 3300038726 Bacteria 31241
103 Ga0400490_21081 3300038726 Bacteria 20811
104 Ga0400490_22447 3300038726 Bacteria 76643
105 Ga0400490_41264 3300038726 Bacteria 84677
106 Ga0400490_47449 3300038726 Bacteria 12140
107 Ga0400490_52868 3300038726 Bacteria 2858
108 Ga0400491_05270 3300038727 Bacteria 3900
109 Ga0400491_05325 3300038727 Bacteria 12728
110 Ga0400491_07648 3300038727 Bacteria 1508
111 Ga0400491_29096 3300038727 Bacteria 2691
112 Ga0400485_18296 3300038735 Bacteria 5561
113 Ga0400485_18896 3300038735 Bacteria 72885
114 Ga0400485_21475 3300038735 Bacteria 11807
115 Ga0400488_05005 3300038741 Bacteria 21809
116 Ga0400488_42063 3300038741 Bacteria 26633
117 Ga0400486_00257 3300038742 Bacteria 38956
118 Ga0400486_19622 3300038742 Bacteria 14201
119 Ga0400486_19627 3300038742 Bacteria 369894
120 Ga0400483_064731 3300039062 Bacteria 28227
121 Ga0400483_216060 3300039062 Bacteria 14383
122 Ga0400483_276796 3300039062 Bacteria 19453
123 Ga0400483_287532 3300039062 Bacteria 3884
124 Ga0400483_288143 3300039062 Bacteria 14000
125 Ga0400487_07326 3300039110 Bacteria 47654
126 Ga0400487_32526 3300039110 Bacteria 1885
127 Ga0400487_44329 3300039110 Unclassified 2185
128 Ga0400487_49464 3300039110 Bacteria 37732
129 Ga0400487_56312 3300039110 Bacteria 61240
130 Ga0451577_0000002 3300042876 Bacteria 1731375
131 Ga0451577_0000234 3300042876 Bacteria 110808
132 Ga0451577_0000419 3300042876 Bacteria 76708
133 Ga0451577_0003141 3300042876 Bacteria 18613
134 Ga0451577_0012751 3300042876 Bacteria 7884
135 Ga0451577_0020091 3300042876 Bacteria 6134
136 Ga0451577_0024614 3300042876 Bacteria 5475
137 Ga0451577_0025834 3300042876 Bacteria 5325
138 Ga0451577_0061798 3300042876 Unclassified 3340
139 Ga0451577_0084957 3300042876 Bacteria 2824
140 Ga0453683_0000013 3300044673 Bacteria 371932
141 Ga0453683_0001070 3300044673 Bacteria 25326
142 Ga0453683_0021252 3300044673 Bacteria 4144
143 Ga0453683_0031514 3300044673 Bacteria 3349
144 Ga0453684_0000002 3300044712 Bacteria 1731375
145 Ga0453684_0000005 3300044712 Bacteria 1431632
146 Ga0453684_0000040 3300044712 Bacteria 690210
147 Ga0453684_0000062 3300044712 Bacteria 487590
148 Ga0453684_0000071 3300044712 Bacteria 448904
149 Ga0453684_0000475 3300044712 Bacteria 159174
150 Ga0453684_0000509 3300044712 Bacteria 151228
151 Ga0453684_0000657 3300044712 Bacteria 124222
152 Ga0453684_0000716 3300044712 Bacteria 117287
153 Ga0453684_0001669 3300044712 Bacteria 60118
154 Ga0453684_0002496 3300044712 Bacteria 44445
155 Ga0453684_0003007 3300044712 Bacteria 39220
156 Ga0453684_0007668 3300044712 Bacteria 19743
157 Ga0453684_0008456 3300044712 Bacteria 18426
158 Ga0453684_0016554 3300044712 Bacteria 11515
159 Ga0453684_0020213 3300044712 Bacteria 10066
160 Ga0453684_0111148 3300044712 Bacteria 3329
161 Ga0453684_0129169 3300044712 Bacteria 3034
162 Ga0451576_0000006 3300045051 Bacteria 949698
163 Ga0451576_0000037 3300045051 Bacteria 372173
164 Ga0451576_0000320 3300045051 Bacteria 116612
165 Ga0451576_0000478 3300045051 Bacteria 89734
166 Ga0451576_0000936 3300045051 Bacteria 55015
167 Ga0451576_0002171 3300045051 Bacteria 30352
168 Ga0451576_0002379 3300045051 Bacteria 28340
169 Ga0451576_0002559 3300045051 Bacteria 26842
170 Ga0451576_0003253 3300045051 Bacteria 22534
171 Ga0451576_0003261 3300045051 Bacteria 22522
172 Ga0451576_0004554 3300045051 Bacteria 17941
173 Ga0451576_0007845 3300045051 Bacteria 12650
174 Ga0451576_0008726 3300045051 Bacteria 11860
175 Ga0451576_0072933 3300045051 Bacteria 3572
176 Ga0451576_0077372 3300045051 Bacteria 3462
177 Ga0451576_0106515 3300045051 Bacteria 2917
178 Ga0451576_0118207 3300045051 Bacteria 2760
179 Ga0496104_0000062 3300048907 Bacteria 117255
180 Ga0496104_0004933 3300048907 Bacteria 11641
181 Ga0496105_0000069 3300048908 Bacteria 80917
182 Ga0496105_0024452 3300048908 Bacteria 4907
183 Ga0496110_0005278 3300048913 Bacteria 10114
184 Ga0496113_0009745 3300048916 Bacteria 6313
185 Ga0501037_0054332 3300049573 Bacteria 2929
186 Ga0501038_0043701 3300049574 Bacteria 3895
187 Ga0501039_0002128 3300049575 Bacteria 14660
188 Ga0501040_0008573 3300049576 Bacteria 6636
189 Ga0501041_0000065 3300049577 Bacteria 39736
190 Ga0501042_0097650 3300049578 Bacteria 2111
191 Ga0501043_0108320 3300049579 Bacteria 2182
192 Ga0501046_0061962 3300049580 Bacteria 2923
193 Ga0501068_0045273 3300049584 Bacteria 2651
194 Ga0501071_0004379 3300049587 Bacteria 8958
195 Ga0501072_0018572 3300049588 Bacteria 5359
196 Ga0501075_0003801 3300049591 Bacteria 10156
197 Ga0501080_0007078 3300049742 Bacteria 10132
198 Ga0501081_0000195 3300049743 Bacteria 29451
199 Ga0501280_000048 3300049776 Bacteria 35936
200 Ga0501035_0037950 3300049822 Bacteria 4362
201 Ga0501045_0029934 3300049824 Bacteria 3938
202 Ga0501084_0031722 3300054114 Bacteria 4418
203 Ga0501082_0001248 3300060353 Bacteria 22338

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0061798 Ga0451577_0061798_1013_2416 425
2 3300044673 Ga0453683_0031514 Ga0453683_0031514_250_1653 425
3 3300044712 Ga0453684_0000509 Ga0453684_0000509_110393_111877 429
4 3300049776 Ga0501280_000048 Ga0501280_000048_10962_12443 429
5 3300038727 Ga0400491_29096 Ga0400491_29096_1091_2437 448
6 3300039062 Ga0400483_276796 Ga0400483_276796_17694_19040 448
7 3300044712 Ga0453684_0002496 Ga0453684_0002496_3360_4751 450
8 iso_pu_bacteria 2854681122 2854681307 454
9 3300031239 Ga0265328_10000953 Ga0265328_100009537 455
10 3300031251 Ga0265327_10000294 Ga0265327_100002947 456
11 3300031727 Ga0316576_10003090 Ga0316576_100030907 456
12 3300031727 Ga0316576_10018193 Ga0316576_100181932 456
13 3300031728 Ga0316578_10009834 Ga0316578_100098343 456
14 3300035398 Ga0316574_0054308 Ga0316574_0054308_1055_2425 456
15 3300038726 Ga0400490_47449 Ga0400490_47449_3785_5182 456
16 3300038727 Ga0400491_05325 Ga0400491_05325_7323_8720 456
17 3300039110 Ga0400487_44329 Ga0400487_44329_51_1442 456
18 3300044712 Ga0453684_0003007 Ga0453684_0003007_10678_12051 456
19 3300031251 Ga0265327_10008282 Ga0265327_100082825 457
20 3300031251 Ga0265327_10009336 Ga0265327_100093364 457
21 3300038726 Ga0400490_22447 Ga0400490_22447_45752_47128 457
22 3300038727 Ga0400491_05270 Ga0400491_05270_2398_3774 457
23 3300031595 Ga0265313_10001342 Ga0265313_1000134212 458
24 3300031727 Ga0316576_10013455 Ga0316576_100134552 458
25 3300031728 Ga0316578_10007273 Ga0316578_100072734 458
26 3300033528 Ga0316588_1018276 Ga0316588_10182761 458
27 3300033528 Ga0316588_1019697 Ga0316588_10196971 458
28 3300036712 Ga0316584_0075268 Ga0316584_0075268_550_1938 458
29 3300038735 Ga0400485_18296 Ga0400485_18296_1758_3173 458
30 3300042876 Ga0451577_0000419 Ga0451577_0000419_1820_3196 458
31 3300042876 Ga0451577_0084957 Ga0451577_0084957_444_1832 458
32 3300044712 Ga0453684_0000475 Ga0453684_0000475_69601_70977 458
33 3300044712 Ga0453684_0008456 Ga0453684_0008456_3293_4681 458
34 3300044712 Ga0453684_0111148 Ga0453684_0111148_234_1610 458
35 3300045051 Ga0451576_0004554 Ga0451576_0004554_1709_3085 458
36 3300028666 Ga0265336_10000081 Ga0265336_1000008158 459
37 3300029957 Ga0265324_10000018 Ga0265324_10000018113 459
38 3300029957 Ga0265324_10000612 Ga0265324_1000061211 459
39 3300031235 Ga0265330_10016027 Ga0265330_100160272 459
40 3300031238 Ga0265332_10002749 Ga0265332_100027494 459
41 3300031240 Ga0265320_10024631 Ga0265320_100246312 459
42 3300031241 Ga0265325_10000035 Ga0265325_1000003546 459
43 3300031241 Ga0265325_10001853 Ga0265325_100018534 459
44 3300031250 Ga0265331_10000138 Ga0265331_1000013877 459
45 3300031250 Ga0265331_10005955 Ga0265331_100059553 459
46 3300031250 Ga0265331_10021028 Ga0265331_100210282 459
47 3300031250 Ga0265331_10045458 Ga0265331_100454582 459
48 3300031251 Ga0265327_10000299 Ga0265327_1000029917 459
49 3300031251 Ga0265327_10000308 Ga0265327_1000030863 459
50 3300031251 Ga0265327_10000438 Ga0265327_100004384 459
51 3300031251 Ga0265327_10003539 Ga0265327_1000353911 459
52 3300031251 Ga0265327_10009828 Ga0265327_100098284 459
53 3300031251 Ga0265327_10038079 Ga0265327_100380792 459
54 3300031344 Ga0265316_10027481 Ga0265316_100274813 459
55 3300031344 Ga0265316_10040827 Ga0265316_100408272 459
56 3300031665 Ga0316575_10000429 Ga0316575_100004298 459
57 3300031665 Ga0316575_10007525 Ga0316575_100075254 459
58 3300031665 Ga0316575_10012634 Ga0316575_100126343 459
59 3300031691 Ga0316579_10004579 Ga0316579_100045795 459
60 3300031691 Ga0316579_10008057 Ga0316579_100080573 459
61 3300031691 Ga0316579_10008715 Ga0316579_100087153 459
62 3300031711 Ga0265314_10001810 Ga0265314_1000181012 459
63 3300031711 Ga0265314_10003325 Ga0265314_100033254 459
64 3300031711 Ga0265314_10021368 Ga0265314_100213681 459
65 3300031711 Ga0265314_10060389 Ga0265314_100603892 459
66 3300031727 Ga0316576_10012775 Ga0316576_100127753 459
67 3300031727 Ga0316576_10018163 Ga0316576_100181632 459
68 3300031727 Ga0316576_10028219 Ga0316576_100282194 459
69 3300031727 Ga0316576_10028469 Ga0316576_100284693 459
70 3300031727 Ga0316576_10036344 Ga0316576_100363442 459
71 3300031727 Ga0316576_10065145 Ga0316576_100651453 459
72 3300031728 Ga0316578_10008737 Ga0316578_100087373 459
73 3300031728 Ga0316578_10013592 Ga0316578_100135922 459
74 3300031728 Ga0316578_10051269 Ga0316578_100512692 459
75 3300031733 Ga0316577_10010510 Ga0316577_100105104 459
76 3300031733 Ga0316577_10031206 Ga0316577_100312062 459
77 3300032133 Ga0316583_10008828 Ga0316583_100088282 459
78 3300032133 Ga0316583_10023319 Ga0316583_100233192 459
79 3300032133 Ga0316583_10036083 Ga0316583_100360832 459
80 3300032137 Ga0316585_10005877 Ga0316585_100058771 459
81 3300032139 Ga0316580_10002709 Ga0316580_100027095 459
82 3300032139 Ga0316580_10029834 Ga0316580_100298341 459
83 3300032168 Ga0316593_10013210 Ga0316593_100132101 459
84 3300032168 Ga0316593_10014197 Ga0316593_100141973 459
85 3300032168 Ga0316593_10021930 Ga0316593_100219302 459
86 3300032168 Ga0316593_10041078 Ga0316593_100410782 459
87 3300032168 Ga0316593_10042190 Ga0316593_100421902 459
88 3300032168 Ga0316593_10044141 Ga0316593_100441411 459
89 3300033524 Ga0316592_1007424 Ga0316592_10074241 459
90 3300033524 Ga0316592_1016480 Ga0316592_10164801 459
91 3300033527 Ga0316586_1000127 Ga0316586_10001274 459
92 3300033527 Ga0316586_1007856 Ga0316586_10078561 459
93 3300033528 Ga0316588_1000828 Ga0316588_10008283 459
94 3300033528 Ga0316588_1003543 Ga0316588_10035432 459
95 3300033528 Ga0316588_1017179 Ga0316588_10171791 459
96 3300033529 Ga0316587_1006914 Ga0316587_10069141 459
97 3300033529 Ga0316587_1008819 Ga0316587_10088191 459
98 3300033529 Ga0316587_1009988 Ga0316587_10099881 459
99 3300033529 Ga0316587_1010193 Ga0316587_10101931 459
100 3300033541 Ga0316596_1018396 Ga0316596_10183961 459
101 3300033541 Ga0316596_1021463 Ga0316596_10214631 459
102 3300033541 Ga0316596_1023571 Ga0316596_10235711 459
103 3300033541 Ga0316596_1026192 Ga0316596_10261921 459
104 3300033541 Ga0316596_1026329 Ga0316596_10263291 459
105 3300033541 Ga0316596_1027416 Ga0316596_10274161 459
106 3300035092 Ga0373952_0000345 Ga0373952_0000345_5669_7048 459
107 3300035398 Ga0316574_0018572 Ga0316574_0018572_1165_2544 459
108 3300035398 Ga0316574_0041966 Ga0316574_0041966_329_1708 459
109 3300036647 Ga0316582_0000277 Ga0316582_0000277_15577_16965 459
110 3300036647 Ga0316582_0011276 Ga0316582_0011276_309_1727 459
111 3300036647 Ga0316582_0021281 Ga0316582_0021281_492_1880 459
112 3300036647 Ga0316582_0051500 Ga0316582_0051500_1003_2436 459
113 3300036647 Ga0316582_0084942 Ga0316582_0084942_145_1524 459
114 3300036647 Ga0316582_0088624 Ga0316582_0088624_296_1675 459
115 3300036647 Ga0316582_0130664 Ga0316582_0130664_137_1546 459
116 3300036712 Ga0316584_0018993 Ga0316584_0018993_3225_4616 459
117 3300036712 Ga0316584_0034745 Ga0316584_0034745_1643_3031 459
118 3300036712 Ga0316584_0040177 Ga0316584_0040177_585_1967 459
119 3300036712 Ga0316584_0057015 Ga0316584_0057015_138_1532 459
120 3300036712 Ga0316584_0066964 Ga0316584_0066964_452_1840 459
121 3300036712 Ga0316584_0159763 Ga0316584_0159763_88_1521 459
122 3300038725 Ga0400484_29981 Ga0400484_29981_16607_17992 459
123 3300038726 Ga0400490_16854 Ga0400490_16854_3203_4603 459
124 3300038726 Ga0400490_21081 Ga0400490_21081_17489_18874 459
125 3300038726 Ga0400490_41264 Ga0400490_41264_63397_64782 459
126 3300038726 Ga0400490_52868 Ga0400490_52868_1061_2446 459
127 3300038727 Ga0400491_07648 Ga0400491_07648_97_1482 459
128 3300038735 Ga0400485_18896 Ga0400485_18896_20284_21669 459
129 3300038735 Ga0400485_21475 Ga0400485_21475_9031_10416 459
130 3300038741 Ga0400488_05005 Ga0400488_05005_18433_19818 459
131 3300038741 Ga0400488_42063 Ga0400488_42063_8448_9833 459
132 3300038742 Ga0400486_00257 Ga0400486_00257_33264_34649 459
133 3300038742 Ga0400486_19622 Ga0400486_19622_11427_12812 459
134 3300038742 Ga0400486_19627 Ga0400486_19627_30047_31432 459
135 3300039062 Ga0400483_064731 Ga0400483_064731_10707_12092 459
136 3300039062 Ga0400483_216060 Ga0400483_216060_5484_6869 459
137 3300039062 Ga0400483_287532 Ga0400483_287532_911_2296 459
138 3300039062 Ga0400483_288143 Ga0400483_288143_6610_7995 459
139 3300039110 Ga0400487_07326 Ga0400487_07326_20237_21622 459
140 3300039110 Ga0400487_32526 Ga0400487_32526_241_1704 459
141 3300039110 Ga0400487_49464 Ga0400487_49464_333_1718 459
142 3300039110 Ga0400487_56312 Ga0400487_56312_398_1783 459
143 3300042876 Ga0451577_0000002 Ga0451577_0000002_1629606_1630985 459
144 3300042876 Ga0451577_0000234 Ga0451577_0000234_9553_10932 459
145 3300042876 Ga0451577_0003141 Ga0451577_0003141_3781_5193 459
146 3300042876 Ga0451577_0012751 Ga0451577_0012751_5944_7323 459
147 3300042876 Ga0451577_0020091 Ga0451577_0020091_886_2265 459
148 3300042876 Ga0451577_0024614 Ga0451577_0024614_611_1990 459
149 3300042876 Ga0451577_0025834 Ga0451577_0025834_2732_4111 459
150 3300044673 Ga0453683_0000013 Ga0453683_0000013_270163_271542 459
151 3300044673 Ga0453683_0001070 Ga0453683_0001070_9544_10923 459
152 3300044673 Ga0453683_0021252 Ga0453683_0021252_72_1454 459
153 3300044712 Ga0453684_0000002 Ga0453684_0000002_100391_101770 459
154 3300044712 Ga0453684_0000005 Ga0453684_0000005_1250487_1251866 459
155 3300044712 Ga0453684_0000040 Ga0453684_0000040_587236_588648 459
156 3300044712 Ga0453684_0000062 Ga0453684_0000062_382963_384345 459
157 3300044712 Ga0453684_0000071 Ga0453684_0000071_136705_138117 459
158 3300044712 Ga0453684_0000657 Ga0453684_0000657_33073_34452 459
159 3300044712 Ga0453684_0000716 Ga0453684_0000716_81394_82773 459
160 3300044712 Ga0453684_0001669 Ga0453684_0001669_35032_36411 459
161 3300044712 Ga0453684_0007668 Ga0453684_0007668_6086_7465 459
162 3300044712 Ga0453684_0016554 Ga0453684_0016554_8168_9640 459
163 3300044712 Ga0453684_0020213 Ga0453684_0020213_7470_8849 459
164 3300044712 Ga0453684_0129169 Ga0453684_0129169_1453_2835 459
165 3300045051 Ga0451576_0000006 Ga0451576_0000006_555119_556531 459
166 3300045051 Ga0451576_0000037 Ga0451576_0000037_270404_271783 459
167 3300045051 Ga0451576_0000320 Ga0451576_0000320_38103_39578 459
168 3300045051 Ga0451576_0000478 Ga0451576_0000478_5328_6710 459
169 3300045051 Ga0451576_0000936 Ga0451576_0000936_41619_42998 459
170 3300045051 Ga0451576_0002171 Ga0451576_0002171_13047_14426 459
171 3300045051 Ga0451576_0002379 Ga0451576_0002379_15784_17163 459
172 3300045051 Ga0451576_0002559 Ga0451576_0002559_25453_26832 459
173 3300045051 Ga0451576_0003253 Ga0451576_0003253_16221_17633 459
174 3300045051 Ga0451576_0003261 Ga0451576_0003261_16559_17941 459
175 3300045051 Ga0451576_0007845 Ga0451576_0007845_8519_9898 459
176 3300045051 Ga0451576_0008726 Ga0451576_0008726_8101_9483 459
177 3300045051 Ga0451576_0072933 Ga0451576_0072933_1373_2791 459
178 3300045051 Ga0451576_0077372 Ga0451576_0077372_754_2154 459
179 3300045051 Ga0451576_0106515 Ga0451576_0106515_755_2134 459
180 3300045051 Ga0451576_0118207 Ga0451576_0118207_524_1903 459
181 3300048907 Ga0496104_0000062 Ga0496104_0000062_83826_85211 459
182 3300048907 Ga0496104_0004933 Ga0496104_0004933_2886_4271 459
183 3300048908 Ga0496105_0000069 Ga0496105_0000069_47488_48873 459
184 3300048908 Ga0496105_0024452 Ga0496105_0024452_221_1606 459
185 3300048913 Ga0496110_0005278 Ga0496110_0005278_7546_8931 459
186 3300048916 Ga0496113_0009745 Ga0496113_0009745_3764_5149 459
187 3300049573 Ga0501037_0054332 Ga0501037_0054332_199_1590 459
188 3300049574 Ga0501038_0043701 Ga0501038_0043701_272_1663 459
189 3300049575 Ga0501039_0002128 Ga0501039_0002128_4068_5459 459
190 3300049576 Ga0501040_0008573 Ga0501040_0008573_1743_3134 459
191 3300049577 Ga0501041_0000065 Ga0501041_0000065_32666_34057 459
192 3300049578 Ga0501042_0097650 Ga0501042_0097650_683_2074 459
193 3300049579 Ga0501043_0108320 Ga0501043_0108320_271_1662 459
194 3300049580 Ga0501046_0061962 Ga0501046_0061962_1220_2611 459
195 3300049584 Ga0501068_0045273 Ga0501068_0045273_809_2200 459
196 3300049587 Ga0501071_0004379 Ga0501071_0004379_6137_7528 459
197 3300049588 Ga0501072_0018572 Ga0501072_0018572_2969_4360 459
198 3300049591 Ga0501075_0003801 Ga0501075_0003801_2855_4246 459
199 3300049742 Ga0501080_0007078 Ga0501080_0007078_2515_3906 459
200 3300049743 Ga0501081_0000195 Ga0501081_0000195_19455_20846 459
201 3300049822 Ga0501035_0037950 Ga0501035_0037950_678_2069 459
202 3300049824 Ga0501045_0029934 Ga0501045_0029934_821_2212 459
203 3300054114 Ga0501084_0031722 Ga0501084_0031722_1817_3208 459
204 3300060353 Ga0501082_0001248 Ga0501082_0001248_8401_9792 459

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00016

RuBisCO_large

Ribulose bisphosphate carboxylase large chain, catalytic domain

172

472

0.98

PF02788

RuBisCO_large_N

Ribulose bisphosphate carboxylase large chain, N-terminal domain

32

162

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5c2c-assembly1.cif.gz_B-2 gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9928 3 447
5c2c-assembly1.cif.gz_B-2 gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9905 3 447
5c2c-assembly1.cif.gz_A gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9901 3 459
7t1j-assembly1.cif.gz_G crystal structure of rubisco from rhodospirillaceae bacterium brh_c57 0.9879 1 452
5c2c-assembly1.cif.gz_A gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9879 3 459
ID Description Score Start End Superfamily
4lf1A01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RuBisCO large subunit, N-terminal domain 0.9663 5 136 3.30.70.150
5rubB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.962 138 438 3.20.20.110
5rubB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.9524 138 438 3.20.20.110
4lf1A01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RuBisCO large subunit, N-terminal domain 0.9522 5 136 3.30.70.150
5macE02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.939 138 441 3.20.20.110
ID Description Score Start End GO Terms
AF-L0L4Z5-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit form II 0.9996 198 285 GO:0000287
GO:0016984
AF-A0A1B2LQ42-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase 0.9961 215 327 GO:0000287
GO:0016984
AF-A0A1B2LQ31-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase 0.9953 230 327 GO:0000287
GO:0016984
AF-A0A7C3D5F8-F1-model_v4 Ribulose-bisphosphate carboxylase (EC 4.1.1.39) 0.995 206 459 GO:0000287
GO:0016984
AF-E0WHA9-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase form II large subunit 0.9946 209 292 GO:0000287
GO:0016984

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pLDDT pTM Quality
92.54 0.91 High
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Predicted Structure (AlphaFold2)

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