F312567
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 204 | 152 | 162 | 292 |
Family's Representative Sequence
| Representative Sequence | 3300014968|Ga0157379_10170257|Ga0157379_101702572 |
| Length | 331 |
| Sequence | MPRRALTPTPRAPASRLGAHAPAAGGLAKAALPHIDGTGATAVQVYVSNPRGWALSDGDPAQDEGFLAGCAERDVHSYVHASLLVNLGSPTPDTVTRSAQTLAHALARARRIGARAVVYHAGSAVDEGYATTALGQLRTVLLPLLEANAAAGGPRLLVEPSAGGGRSLAARVEDLGPYFEAVDWHPGLGVCFDTCHAWAAGHDLSVAGGMTATLDRLLATVGPDRLNLVHANDSKDTCGSLRDRHETIGAGTLGERAFAELLAHPITHGVPVIVETPTTGTAGHAADIATLTRLAGPPHTGTRPAAPPAGRRASRSTGAGAARTAAARSNP |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2501939600 | Micromonospora sp. L5 | Isolate | Unclassified |
| 2 | 2515154088 | Salinispora arenicola CNT800 | Isolate | Rhizosphere |
| 3 | 2515154129 | Salinispora pacifica CNS103 | Isolate | Rhizosphere |
| 4 | 2515154137 | Salinispora arenicola CNX482 | Isolate | Rhizosphere |
| 5 | 2515154202 | Salinispora pacifica CNT084 | Isolate | Rhizosphere |
| 6 | 2515154203 | Salinispora arenicola CNR921 | Isolate | Rhizosphere |
| 7 | 2622736626 | Micromonospora rhizosphaerae DSM 45431 | Isolate | Rhizosphere |
| 8 | 2675903059 | Asanoa hainanensis CGMCC 4.5593 | Isolate | Rhizosphere |
| 9 | 2751185782 | Actinoplanes subtropicus NRRL B-24665 | Isolate | Rhizosphere |
| 10 | 2772190715 | Micromonospora chokoriensis NRRL B-24750 | Isolate | Unclassified |
| 11 | 2831935698 | Jishengella sp. AZ1-13 | Isolate | Unclassified |
| 12 | 2832004796 | Micromonospora endophytica JCM 18317 | Isolate | Unclassified |
| 13 | 2855670206 | Micromonospora noduli Lupac 07 | Isolate | Nodule |
| 14 | 2855676851 | Micromonospora saelicesensis GAR05 | Isolate | Unclassified |
| 15 | 2856858025 | Micromonospora aurantiaca 110B(2018) | Isolate | Unclassified |
| 16 | 2857288857 | Micromonospora noduli ONO23 | Isolate | Unclassified |
| 17 | 2858848962 | Micromonospora saelicesensis GAR06 | Isolate | Unclassified |
| 18 | 2858882152 | Micromonospora noduli MED15 | Isolate | Nodule |
| 19 | 2858888857 | Micromonospora saelicesensis Lupac 06 | Isolate | Unclassified |
| 20 | 2858895516 | Micromonospora saelicesensis PSN13 | Isolate | Unclassified |
| 21 | 2858902515 | Micromonospora sp. MW-13 | Isolate | Rhizosphere |
| 22 | 2866065130 | Micromonospora endophytica DSM 45430 | Isolate | Unclassified |
| 23 | 2867302475 | Micromonospora globbae WPS1-2 | Isolate | Unclassified |
| 24 | 2867312974 | Micromonospora musae NGC1-4 | Isolate | Unclassified |
| 25 | 2867319477 | Micromonospora musae MS1-9 | Isolate | Unclassified |
| 26 | 2867507094 | Micromonospora zingiberis PLAI 1-1 | Isolate | Unclassified |
| 27 | 2869048445 | Micromonospora saelicesensis PSN01 | Isolate | Unclassified |
| 28 | 2869061728 | Micromonospora noduli ONO86 | Isolate | Unclassified |
| 29 | 2869068681 | Micromonospora noduli GUI43 | Isolate | Unclassified |
| 30 | 2880489317 | Micromonospora ureilytica DSM 101692 | Isolate | Unclassified |
| 31 | 2880495981 | Micromonospora vinacea DSM 101695 | Isolate | Unclassified |
| 32 | 2902582711 | Micromonospora sp. AP08 | Isolate | Unclassified |
| 33 | 2929219909 | Micromonospora sp. R-75348 Hybrid assembly | Isolate | Unclassified |
| 34 | 2929226422 | Micromonospora sp. R-74116 Hybrid assembly | Isolate | Unclassified |
| 35 | 2996221748 | Micromonospora veneta CAP181 | Isolate | Unclassified |
| 36 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 37 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 38 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 39 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 40 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 41 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 42 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 43 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 44 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 45 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 46 | 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Metagenome | Rhizosphere |
| 47 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 48 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 49 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 50 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 51 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 52 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 53 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 54 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 55 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 56 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 57 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 58 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 59 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 60 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 61 | 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Metagenome | Rhizosphere |
| 62 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 63 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 64 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 65 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 67 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 68 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 70 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 71 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 72 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 73 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 74 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 75 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 76 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 77 | 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 78 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 79 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 80 | 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 98 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 99 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 100 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 101 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 102 | 3300030522 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM | Metagenome | Unclassified |
| 103 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 104 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 105 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 106 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 107 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 108 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 109 | 3300031889 | Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO | Metagenome | Rhizosphere |
| 110 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 111 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 112 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 113 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 114 | 3300033179 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM | Metagenome | Unclassified |
| 115 | 3300034957 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 | Metagenome | Rhizosphere |
| 116 | 3300035091 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 | Metagenome | Rhizosphere |
| 117 | 3300035112 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 | Metagenome | Rhizosphere |
| 118 | 3300035207 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 | Metagenome | Rhizosphere |
| 119 | 3300035242 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 | Metagenome | Rhizosphere |
| 120 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 121 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 122 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 123 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 124 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 125 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 126 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 127 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 130 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 131 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 132 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 133 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 134 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 135 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 136 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 137 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 138 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 139 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 140 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 141 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 142 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 143 | 3300053109 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere | Metagenome | Endosphere |
| 144 | 3300053146 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere | Metagenome | Endosphere |
| 145 | 3300053149 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere | Metagenome | Endosphere |
| 146 | 649633069 | Micromonospora sp. L5 | Isolate | Unclassified |
| 147 | 8003856774 | Micromonospora echinofusca MPMI6 | Isolate | Unclassified |
| 148 | 8003870546 | Micromonospora tarensis STR1s_6 | Isolate | Rhizosphere |
| 149 | 8054704163 | Micromonospora trifolii NIE79 | Isolate | Nodule |
| 150 | 8054727385 | Micromonospora alfalfae MED01 | Isolate | Nodule |
| 151 | 8054734606 | Micromonospora hortensis NIE111 | Isolate | Nodule |
| 152 | 8055412473 | Micromonospora phytophila DSM 105363 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 77.45 |
| Metatranscriptomes | 1.96 |
| Isolates | 20.59 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 1.47 |
| Nodule | 2.94 |
| Rhizoplane | 5.39 |
| Rhizosphere | 69.12 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 21.08 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25406J46586_10010653 | 3300003203 | Bacteria | 4069 |
| 2 | rootH1_10024574 | 3300003316 | Bacteria | 3001 |
| 3 | rootH2_10001790 | 3300003320 | Bacteria | 1883 |
| 4 | Ga0070658_10020658 | 3300005327 | Bacteria | 5275 |
| 5 | Ga0070683_100258752 | 3300005329 | Bacteria | 1655 |
| 6 | Ga0070683_100703662 | 3300005329 | Bacteria | 968 |
| 7 | Ga0070682_100028123 | 3300005337 | Bacteria | 3380 |
| 8 | Ga0070661_100106609 | 3300005344 | Bacteria | 2089 |
| 9 | Ga0070668_100013408 | 3300005347 | Bacteria | 6117 |
| 10 | Ga0070659_100060048 | 3300005366 | Bacteria | 3003 |
| 11 | Ga0070667_100022987 | 3300005367 | Bacteria | 5170 |
| 12 | Ga0070709_10110411 | 3300005434 | Bacteria | 1848 |
| 13 | Ga0070714_100228850 | 3300005435 | Bacteria | 1712 |
| 14 | Ga0070713_100148240 | 3300005436 | Bacteria | 2085 |
| 15 | Ga0070679_100049214 | 3300005530 | Bacteria | 4198 |
| 16 | Ga0070679_100360933 | 3300005530 | Bacteria | 1400 |
| 17 | Ga0070684_100004200 | 3300005535 | Bacteria | 10911 |
| 18 | Ga0070684_100114790 | 3300005535 | Bacteria | 2418 |
| 19 | Ga0070684_100262925 | 3300005535 | Bacteria | 1579 |
| 20 | Ga0068855_100243175 | 3300005563 | Bacteria | 2010 |
| 21 | Ga0070664_100054586 | 3300005564 | Bacteria | 3390 |
| 22 | Ga0068857_100159357 | 3300005577 | Bacteria | 2047 |
| 23 | Ga0068857_100452915 | 3300005577 | Bacteria | 1200 |
| 24 | Ga0068859_100671624 | 3300005617 | Bacteria | 1127 |
| 25 | Ga0068864_100004414 | 3300005618 | Bacteria | 11554 |
| 26 | Ga0068864_100120620 | 3300005618 | Bacteria | 2345 |
| 27 | Ga0068863_100058084 | 3300005841 | Bacteria | 3661 |
| 28 | Ga0068863_100330064 | 3300005841 | Bacteria | 1483 |
| 29 | Ga0068858_100043209 | 3300005842 | Bacteria | 4179 |
| 30 | Ga0068858_100085036 | 3300005842 | Bacteria | 2943 |
| 31 | Ga0068860_100059396 | 3300005843 | Bacteria | 3635 |
| 32 | Ga0068862_100058801 | 3300005844 | Bacteria | 3299 |
| 33 | Ga0068862_100120182 | 3300005844 | Bacteria | 2315 |
| 34 | Ga0081539_10000253 | 3300005985 | Bacteria | 124747 |
| 35 | Ga0081539_10000364 | 3300005985 | Bacteria | 99066 |
| 36 | Ga0081539_10002412 | 3300005985 | Bacteria | 26444 |
| 37 | Ga0081539_10009043 | 3300005985 | Bacteria | 8455 |
| 38 | Ga0081539_10078127 | 3300005985 | Bacteria | 1748 |
| 39 | Ga0070716_100200775 | 3300006173 | Bacteria | 1325 |
| 40 | Ga0075428_100000347 | 3300006844 | Bacteria | 45930 |
| 41 | Ga0075428_100000841 | 3300006844 | Bacteria | 32161 |
| 42 | Ga0075428_100012357 | 3300006844 | Bacteria | 9500 |
| 43 | Ga0075431_100007272 | 3300006847 | Bacteria | 11022 |
| 44 | Ga0075431_100230783 | 3300006847 | Bacteria | 1886 |
| 45 | Ga0075429_100000238 | 3300006880 | Bacteria | 37822 |
| 46 | Ga0075429_100003656 | 3300006880 | Bacteria | 13101 |
| 47 | Ga0075429_100200736 | 3300006880 | Bacteria | 1747 |
| 48 | Ga0097620_100671636 | 3300006931 | Bacteria | 1127 |
| 49 | Ga0105245_10791954 | 3300009098 | Bacteria | 986 |
| 50 | Ga0105247_10037184 | 3300009101 | Bacteria | 2970 |
| 51 | Ga0114129_10000004 | 3300009147 | Bacteria | 160944 |
| 52 | Ga0114129_10004574 | 3300009147 | Bacteria | 19512 |
| 53 | Ga0114129_10004924 | 3300009147 | Bacteria | 18844 |
| 54 | Ga0114129_10043059 | 3300009147 | Bacteria | 6354 |
| 55 | Ga0105248_10014657 | 3300009177 | Bacteria | 8627 |
| 56 | Ga0105238_10221063 | 3300009551 | Bacteria | 1870 |
| 57 | Ga0157370_10222377 | 3300013104 | Bacteria | 1749 |
| 58 | Ga0157369_10029875 | 3300013105 | Bacteria | 6018 |
| 59 | Ga0157378_10055320 | 3300013297 | Bacteria | 3535 |
| 60 | Ga0157375_10398649 | 3300013308 | Bacteria | 1543 |
| 61 | Ga0157375_11009614 | 3300013308 | Bacteria | 971 |
| 62 | Ga0163163_10072437 | 3300014325 | Bacteria | 3434 |
| 63 | Ga0163163_10093439 | 3300014325 | Bacteria | 3024 |
| 64 | Ga0157379_10110844 | 3300014968 | Bacteria | 2464 |
| 65 | Ga0157379_10170257 | 3300014968 | Bacteria | 1966 |
| 66 | Ga0206356_11014197 | 3300020070 | Bacteria | 3938 |
| 67 | Ga0206354_11198043 | 3300020081 | Bacteria | 2690 |
| 68 | Ga0206353_11598648 | 3300020082 | Bacteria | 1440 |
| 69 | Ga0206353_11740598 | 3300020082 | Bacteria | 1642 |
| 70 | Ga0207643_10199840 | 3300025908 | Bacteria | 1217 |
| 71 | Ga0207705_10145828 | 3300025909 | Bacteria | 1771 |
| 72 | Ga0207660_10042891 | 3300025917 | Bacteria | 3177 |
| 73 | Ga0207660_10155685 | 3300025917 | Bacteria | 1759 |
| 74 | Ga0207657_10032197 | 3300025919 | Bacteria | 4740 |
| 75 | Ga0207652_10309335 | 3300025921 | Bacteria | 1426 |
| 76 | Ga0207690_10021961 | 3300025932 | Bacteria | 3965 |
| 77 | Ga0207689_10505178 | 3300025942 | Bacteria | 1013 |
| 78 | Ga0207661_10004959 | 3300025944 | Bacteria | 9336 |
| 79 | Ga0207661_10008942 | 3300025944 | Bacteria | 7172 |
| 80 | Ga0207679_10024882 | 3300025945 | Bacteria | 4110 |
| 81 | Ga0207667_10641090 | 3300025949 | Bacteria | 1069 |
| 82 | Ga0207668_10004102 | 3300025972 | Bacteria | 8559 |
| 83 | Ga0207658_10227541 | 3300025986 | Bacteria | 1572 |
| 84 | Ga0207703_10043906 | 3300026035 | Bacteria | 3589 |
| 85 | Ga0207703_10451244 | 3300026035 | Bacteria | 1201 |
| 86 | Ga0207678_10279187 | 3300026067 | Bacteria | 1433 |
| 87 | Ga0207702_10130230 | 3300026078 | Bacteria | 2263 |
| 88 | Ga0207641_10230513 | 3300026088 | Bacteria | 1721 |
| 89 | Ga0207676_10179079 | 3300026095 | Bacteria | 1855 |
| 90 | Ga0207676_10459987 | 3300026095 | Bacteria | 1201 |
| 91 | Ga0207683_10076181 | 3300026121 | Bacteria | 2970 |
| 92 | Ga0268265_10027016 | 3300028380 | Bacteria | 4091 |
| 93 | Ga0268265_10062520 | 3300028380 | Bacteria | 2861 |
| 94 | Ga0268264_10280662 | 3300028381 | Bacteria | 1560 |
| 95 | Ga0307517_10054223 | 3300028786 | Bacteria | 3971 |
| 96 | Ga0307515_10000356 | 3300028794 | Bacteria | 112492 |
| 97 | Ga0307515_10098330 | 3300028794 | Bacteria | 3565 |
| 98 | Ga0307512_10005457 | 3300030522 | Bacteria | 13270 |
| 99 | Ga0307512_10030668 | 3300030522 | Bacteria | 4673 |
| 100 | Ga0307513_10008626 | 3300031456 | Bacteria | 13000 |
| 101 | Ga0307513_10068262 | 3300031456 | Bacteria | 3725 |
| 102 | Ga0307513_10203035 | 3300031456 | Bacteria | 1821 |
| 103 | Ga0307509_10011319 | 3300031507 | Bacteria | 10817 |
| 104 | Ga0307508_10003280 | 3300031616 | Bacteria | 16496 |
| 105 | Ga0307508_10030871 | 3300031616 | Bacteria | 4843 |
| 106 | Ga0307516_10005714 | 3300031730 | Bacteria | 14747 |
| 107 | Ga0307516_10023730 | 3300031730 | Bacteria | 6277 |
| 108 | Ga0307516_10213547 | 3300031730 | Bacteria | 1642 |
| 109 | Ga0307405_10352086 | 3300031731 | Bacteria | 1136 |
| 110 | Ga0307410_10069241 | 3300031852 | Bacteria | 2440 |
| 111 | Ga0326468_10000572 | 3300031889 | Bacteria | 3837 |
| 112 | Ga0307406_10001529 | 3300031901 | Bacteria | 12779 |
| 113 | Ga0307406_10019980 | 3300031901 | Bacteria | 3937 |
| 114 | Ga0307406_10084935 | 3300031901 | Bacteria | 2115 |
| 115 | Ga0307407_10025166 | 3300031903 | Bacteria | 3133 |
| 116 | Ga0307416_100093244 | 3300032002 | Bacteria | 2593 |
| 117 | Ga0307415_100001503 | 3300032126 | Bacteria | 11190 |
| 118 | Ga0307415_100050551 | 3300032126 | Bacteria | 2817 |
| 119 | Ga0307415_100058810 | 3300032126 | Bacteria | 2648 |
| 120 | Ga0307415_100137113 | 3300032126 | Bacteria | 1863 |
| 121 | Ga0307415_100190237 | 3300032126 | Bacteria | 1619 |
| 122 | Ga0307507_10044455 | 3300033179 | Bacteria | 4390 |
| 123 | Ga0373938_0025301 | 3300034957 | Bacteria | 1234 |
| 124 | Ga0373951_0000163 | 3300035091 | Bacteria | 24308 |
| 125 | Ga0373932_0011817 | 3300035112 | Bacteria | 2140 |
| 126 | Ga0373942_0000399 | 3300035207 | Bacteria | 12049 |
| 127 | Ga0373962_0002111 | 3300035242 | Bacteria | 4749 |
| 128 | Ga0373935_0014586 | 3300035692 | Bacteria | 4743 |
| 129 | Ga0395898_0042179 | 3300037466 | Bacteria | 4504 |
| 130 | Ga0395905_0059295 | 3300037471 | Bacteria | 3578 |
| 131 | Ga0395901_0033424 | 3300038443 | Bacteria | 5310 |
| 132 | Ga0466970_0053015 | 3300044765 | Bacteria | 2166 |
| 133 | Ga0466960_0028604 | 3300044901 | Bacteria | 2552 |
| 134 | Ga0466967_0190452 | 3300045976 | Bacteria | 1938 |
| 135 | Ga0495630_0207807 | 3300046517 | Bacteria | 1494 |
| 136 | Ga0495630_0263621 | 3300046517 | Bacteria | 1316 |
| 137 | Ga0495632_0123190 | 3300046519 | Bacteria | 1210 |
| 138 | Ga0496104_0334747 | 3300048907 | Bacteria | 1427 |
| 139 | Ga0496105_0101542 | 3300048908 | Bacteria | 2375 |
| 140 | Ga0496106_0151983 | 3300048909 | Bacteria | 1827 |
| 141 | Ga0496108_0000029 | 3300048911 | Bacteria | 167261 |
| 142 | Ga0496108_0007170 | 3300048911 | Bacteria | 9034 |
| 143 | Ga0496109_0092931 | 3300048912 | Bacteria | 2790 |
| 144 | Ga0496110_0068353 | 3300048913 | Bacteria | 3145 |
| 145 | Ga0496111_0010094 | 3300048914 | Bacteria | 6322 |
| 146 | Ga0496112_0121642 | 3300048915 | Bacteria | 2580 |
| 147 | Ga0496112_0295621 | 3300048915 | Bacteria | 1565 |
| 148 | Ga0496113_0001032 | 3300048916 | Bacteria | 14993 |
| 149 | Ga0501047_0056989 | 3300049581 | Bacteria | 3779 |
| 150 | nmdc:mga05p37_152193_c1 | 3300050507 | Bacteria | 2829 |
| 151 | nmdc:mga05p37_240_c1 | 3300050507 | Bacteria | 56075 |
| 152 | nmdc:mga05p37_26874_c1 | 3300050507 | Bacteria | 6208 |
| 153 | nmdc:mga05p37_742_c1 | 3300050507 | Bacteria | 36147 |
| 154 | nmdc:mga09592_14_c1 | 3300050508 | Bacteria | 66825 |
| 155 | nmdc:mga09592_71663_c1 | 3300050508 | Bacteria | 2941 |
| 156 | nmdc:mga0qj67_54_c3 | 3300050509 | Bacteria | 38260 |
| 157 | nmdc:mga06r32_18_c3 | 3300050510 | Bacteria | 53938 |
| 158 | nmdc:mga06r32_214045_c1 | 3300050510 | Bacteria | 1915 |
| 159 | nmdc:mga06r32_455581_c1 | 3300050510 | Bacteria | 1259 |
| 160 | Ga0500569_023857 | 3300053109 | Bacteria | 1649 |
| 161 | Ga0500588_0004241 | 3300053146 | Bacteria | 3091 |
| 162 | Ga0500600_0103691 | 3300053149 | Bacteria | 1496 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300009147 | Ga0114129_10004924 | Ga0114129_1000492416 | 253 |
| 2 | 3300032126 | Ga0307415_100058810 | Ga0307415_1000588103 | 254 |
| 3 | 3300013104 | Ga0157370_10222377 | Ga0157370_102223772 | 263 |
| 4 | 3300013105 | Ga0157369_10029875 | Ga0157369_100298756 | 263 |
| 5 | 3300048907 | Ga0496104_0334747 | Ga0496104_0334747_552_1367 | 263 |
| 6 | 3300048915 | Ga0496112_0295621 | Ga0496112_0295621_202_1017 | 263 |
| 7 | 3300044765 | Ga0466970_0053015 | Ga0466970_0053015_1306_2130 | 266 |
| 8 | 3300031616 | Ga0307508_10030871 | Ga0307508_100308712 | 269 |
| 9 | 3300053109 | Ga0500569_023857 | Ga0500569_023857_365_1174 | 269 |
| 10 | 3300046519 | Ga0495632_0123190 | Ga0495632_0123190_204_1028 | 272 |
| 11 | iso_pu_bacteria | 2675903059 | 2676483512 | 273 |
| 12 | 3300005535 | Ga0070684_100004200 | Ga0070684_1000042005 | 275 |
| 13 | 3300005577 | Ga0068857_100159357 | Ga0068857_1001593571 | 275 |
| 14 | 3300025944 | Ga0207661_10008942 | Ga0207661_100089426 | 275 |
| 15 | iso_pu_bacteria | 2501939600 | 2501942131 | 276 |
| 16 | iso_pu_bacteria | 2856858025 | 2856864509 | 276 |
| 17 | iso_pu_bacteria | 649633069 | 649813963 | 276 |
| 18 | 3300046517 | Ga0495630_0263621 | Ga0495630_0263621_335_1237 | 278 |
| 19 | iso_pu_bacteria | 2751185782 | 2753272471 | 281 |
| 20 | 3300028786 | Ga0307517_10054223 | Ga0307517_100542232 | 282 |
| 21 | 3300030522 | Ga0307512_10005457 | Ga0307512_1000545713 | 282 |
| 22 | 3300031456 | Ga0307513_10008626 | Ga0307513_100086269 | 282 |
| 23 | 3300031456 | Ga0307513_10068262 | Ga0307513_100682622 | 282 |
| 24 | iso_pu_bacteria | 2515154129 | 2515719105 | 282 |
| 25 | iso_pu_bacteria | 2515154202 | 2516083312 | 282 |
| 26 | iso_pu_bacteria | 2902582711 | 2902583405 | 282 |
| 27 | iso_pu_bacteria | 2929219909 | 2929224724 | 282 |
| 28 | iso_pu_bacteria | 2996221748 | 2996227541 | 282 |
| 29 | 3300003316 | rootH1_10024574 | rootH1_100245742 | 283 |
| 30 | 3300005327 | Ga0070658_10020658 | Ga0070658_100206583 | 283 |
| 31 | 3300005329 | Ga0070683_100258752 | Ga0070683_1002587523 | 283 |
| 32 | 3300005329 | Ga0070683_100703662 | Ga0070683_1007036621 | 283 |
| 33 | 3300005337 | Ga0070682_100028123 | Ga0070682_1000281234 | 283 |
| 34 | 3300005344 | Ga0070661_100106609 | Ga0070661_1001066093 | 283 |
| 35 | 3300005347 | Ga0070668_100013408 | Ga0070668_1000134087 | 283 |
| 36 | 3300005366 | Ga0070659_100060048 | Ga0070659_1000600482 | 283 |
| 37 | 3300005367 | Ga0070667_100022987 | Ga0070667_1000229876 | 283 |
| 38 | 3300005436 | Ga0070713_100148240 | Ga0070713_1001482402 | 283 |
| 39 | 3300005530 | Ga0070679_100049214 | Ga0070679_1000492145 | 283 |
| 40 | 3300005535 | Ga0070684_100262925 | Ga0070684_1002629252 | 283 |
| 41 | 3300005563 | Ga0068855_100243175 | Ga0068855_1002431752 | 283 |
| 42 | 3300005617 | Ga0068859_100671624 | Ga0068859_1006716242 | 283 |
| 43 | 3300005618 | Ga0068864_100120620 | Ga0068864_1001206203 | 283 |
| 44 | 3300005841 | Ga0068863_100330064 | Ga0068863_1003300642 | 283 |
| 45 | 3300005842 | Ga0068858_100043209 | Ga0068858_1000432092 | 283 |
| 46 | 3300005843 | Ga0068860_100059396 | Ga0068860_1000593963 | 283 |
| 47 | 3300005844 | Ga0068862_100058801 | Ga0068862_1000588012 | 283 |
| 48 | 3300005844 | Ga0068862_100120182 | Ga0068862_1001201822 | 283 |
| 49 | 3300005985 | Ga0081539_10000364 | Ga0081539_1000036460 | 283 |
| 50 | 3300006844 | Ga0075428_100000347 | Ga0075428_10000034712 | 283 |
| 51 | 3300006880 | Ga0075429_100200736 | Ga0075429_1002007363 | 283 |
| 52 | 3300006931 | Ga0097620_100671636 | Ga0097620_1006716362 | 283 |
| 53 | 3300009147 | Ga0114129_10000004 | Ga0114129_10000004147 | 283 |
| 54 | 3300013297 | Ga0157378_10055320 | Ga0157378_100553203 | 283 |
| 55 | 3300013308 | Ga0157375_11009614 | Ga0157375_110096141 | 283 |
| 56 | 3300014325 | Ga0163163_10093439 | Ga0163163_100934393 | 283 |
| 57 | 3300020070 | Ga0206356_11014197 | Ga0206356_110141974 | 283 |
| 58 | 3300020081 | Ga0206354_11198043 | Ga0206354_111980432 | 283 |
| 59 | 3300020082 | Ga0206353_11598648 | Ga0206353_115986482 | 283 |
| 60 | 3300025909 | Ga0207705_10145828 | Ga0207705_101458282 | 283 |
| 61 | 3300025917 | Ga0207660_10042891 | Ga0207660_100428912 | 283 |
| 62 | 3300025919 | Ga0207657_10032197 | Ga0207657_100321974 | 283 |
| 63 | 3300025921 | Ga0207652_10309335 | Ga0207652_103093352 | 283 |
| 64 | 3300025932 | Ga0207690_10021961 | Ga0207690_100219612 | 283 |
| 65 | 3300025942 | Ga0207689_10505178 | Ga0207689_105051781 | 283 |
| 66 | 3300025944 | Ga0207661_10004959 | Ga0207661_100049597 | 283 |
| 67 | 3300025949 | Ga0207667_10641090 | Ga0207667_106410901 | 283 |
| 68 | 3300025972 | Ga0207668_10004102 | Ga0207668_100041028 | 283 |
| 69 | 3300025986 | Ga0207658_10227541 | Ga0207658_102275412 | 283 |
| 70 | 3300026035 | Ga0207703_10043906 | Ga0207703_100439064 | 283 |
| 71 | 3300026067 | Ga0207678_10279187 | Ga0207678_102791872 | 283 |
| 72 | 3300026088 | Ga0207641_10230513 | Ga0207641_102305132 | 283 |
| 73 | 3300026095 | Ga0207676_10179079 | Ga0207676_101790792 | 283 |
| 74 | 3300026095 | Ga0207676_10459987 | Ga0207676_104599872 | 283 |
| 75 | 3300026121 | Ga0207683_10076181 | Ga0207683_100761812 | 283 |
| 76 | 3300028380 | Ga0268265_10027016 | Ga0268265_100270162 | 283 |
| 77 | 3300028380 | Ga0268265_10062520 | Ga0268265_100625202 | 283 |
| 78 | 3300028381 | Ga0268264_10280662 | Ga0268264_102806622 | 283 |
| 79 | 3300031507 | Ga0307509_10011319 | Ga0307509_1001131912 | 283 |
| 80 | 3300031731 | Ga0307405_10352086 | Ga0307405_103520861 | 283 |
| 81 | 3300031901 | Ga0307406_10019980 | Ga0307406_100199802 | 283 |
| 82 | 3300031901 | Ga0307406_10084935 | Ga0307406_100849352 | 283 |
| 83 | 3300033179 | Ga0307507_10044455 | Ga0307507_100444552 | 283 |
| 84 | 3300034957 | Ga0373938_0025301 | Ga0373938_0025301_338_1195 | 283 |
| 85 | 3300035091 | Ga0373951_0000163 | Ga0373951_0000163_4184_5041 | 283 |
| 86 | 3300035207 | Ga0373942_0000399 | Ga0373942_0000399_4573_5430 | 283 |
| 87 | 3300035242 | Ga0373962_0002111 | Ga0373962_0002111_857_1714 | 283 |
| 88 | 3300035692 | Ga0373935_0014586 | Ga0373935_0014586_533_1390 | 283 |
| 89 | 3300050507 | nmdc:mga05p37_742_c1 | nmdc:mga05p37_742_c1_23406_24302 | 283 |
| 90 | 3300050508 | nmdc:mga09592_71663_c1 | nmdc:mga09592_71663_c1_656_1552 | 283 |
| 91 | 3300053149 | Ga0500600_0103691 | Ga0500600_0103691_122_973 | 283 |
| 92 | iso_pu_bacteria | 2515154088 | 2515495105 | 283 |
| 93 | iso_pu_bacteria | 2515154137 | 2515754940 | 283 |
| 94 | iso_pu_bacteria | 2515154203 | 2516088583 | 283 |
| 95 | iso_pu_bacteria | 8055412473 | 8055413992 | 283 |
| 96 | 3300005434 | Ga0070709_10110411 | Ga0070709_101104113 | 284 |
| 97 | 3300005435 | Ga0070714_100228850 | Ga0070714_1002288502 | 284 |
| 98 | 3300005530 | Ga0070679_100360933 | Ga0070679_1003609332 | 284 |
| 99 | 3300005535 | Ga0070684_100114790 | Ga0070684_1001147902 | 284 |
| 100 | 3300005564 | Ga0070664_100054586 | Ga0070664_1000545862 | 284 |
| 101 | 3300005618 | Ga0068864_100004414 | Ga0068864_10000441413 | 284 |
| 102 | 3300005841 | Ga0068863_100058084 | Ga0068863_1000580844 | 284 |
| 103 | 3300005842 | Ga0068858_100085036 | Ga0068858_1000850362 | 284 |
| 104 | 3300006844 | Ga0075428_100012357 | Ga0075428_10001235710 | 284 |
| 105 | 3300006847 | Ga0075431_100007272 | Ga0075431_1000072729 | 284 |
| 106 | 3300006880 | Ga0075429_100000238 | Ga0075429_10000023827 | 284 |
| 107 | 3300009147 | Ga0114129_10004574 | Ga0114129_1000457419 | 284 |
| 108 | 3300009177 | Ga0105248_10014657 | Ga0105248_100146579 | 284 |
| 109 | 3300014325 | Ga0163163_10072437 | Ga0163163_100724372 | 284 |
| 110 | 3300014968 | Ga0157379_10110844 | Ga0157379_101108443 | 284 |
| 111 | 3300025917 | Ga0207660_10155685 | Ga0207660_101556852 | 284 |
| 112 | 3300025945 | Ga0207679_10024882 | Ga0207679_100248823 | 284 |
| 113 | 3300026035 | Ga0207703_10451244 | Ga0207703_104512441 | 284 |
| 114 | 3300026078 | Ga0207702_10130230 | Ga0207702_101302304 | 284 |
| 115 | 3300037466 | Ga0395898_0042179 | Ga0395898_0042179_2110_3102 | 284 |
| 116 | 3300037471 | Ga0395905_0059295 | Ga0395905_0059295_517_1509 | 284 |
| 117 | 3300038443 | Ga0395901_0033424 | Ga0395901_0033424_1122_2114 | 284 |
| 118 | 3300045976 | Ga0466967_0190452 | Ga0466967_0190452_671_1534 | 284 |
| 119 | 3300046517 | Ga0495630_0207807 | Ga0495630_0207807_399_1325 | 284 |
| 120 | 3300048908 | Ga0496105_0101542 | Ga0496105_0101542_1382_2302 | 284 |
| 121 | 3300048909 | Ga0496106_0151983 | Ga0496106_0151983_812_1732 | 284 |
| 122 | 3300048911 | Ga0496108_0007170 | Ga0496108_0007170_5741_6661 | 284 |
| 123 | 3300048912 | Ga0496109_0092931 | Ga0496109_0092931_1384_2304 | 284 |
| 124 | 3300048913 | Ga0496110_0068353 | Ga0496110_0068353_1239_2159 | 284 |
| 125 | 3300048914 | Ga0496111_0010094 | Ga0496111_0010094_2333_3253 | 284 |
| 126 | 3300048916 | Ga0496113_0001032 | Ga0496113_0001032_12304_13224 | 284 |
| 127 | 3300050507 | nmdc:mga05p37_26874_c1 | nmdc:mga05p37_26874_c1_1636_2490 | 284 |
| 128 | 3300050510 | nmdc:mga06r32_455581_c1 | nmdc:mga06r32_455581_c1_276_1130 | 284 |
| 129 | iso_pu_bacteria | 2622736626 | 2623590848 | 284 |
| 130 | iso_pu_bacteria | 2772190715 | 2772644179 | 284 |
| 131 | iso_pu_bacteria | 2855670206 | 2855676404 | 284 |
| 132 | iso_pu_bacteria | 2855676851 | 2855681542 | 284 |
| 133 | iso_pu_bacteria | 2857288857 | 2857290506 | 284 |
| 134 | iso_pu_bacteria | 2858848962 | 2858855193 | 284 |
| 135 | iso_pu_bacteria | 2858882152 | 2858888758 | 284 |
| 136 | iso_pu_bacteria | 2858888857 | 2858889032 | 284 |
| 137 | iso_pu_bacteria | 2858895516 | 2858897395 | 284 |
| 138 | iso_pu_bacteria | 2867302475 | 2867303507 | 284 |
| 139 | iso_pu_bacteria | 2867312974 | 2867316137 | 284 |
| 140 | iso_pu_bacteria | 2867319477 | 2867321003 | 284 |
| 141 | iso_pu_bacteria | 2869048445 | 2869049301 | 284 |
| 142 | iso_pu_bacteria | 2869061728 | 2869061869 | 284 |
| 143 | iso_pu_bacteria | 2869068681 | 2869073218 | 284 |
| 144 | iso_pu_bacteria | 2880489317 | 2880489656 | 284 |
| 145 | iso_pu_bacteria | 2880495981 | 2880496047 | 284 |
| 146 | iso_pu_bacteria | 2929226422 | 2929232337 | 284 |
| 147 | iso_pu_bacteria | 8003856774 | 8003861270 | 284 |
| 148 | iso_pu_bacteria | 8003870546 | 8003878033 | 284 |
| 149 | iso_pu_bacteria | 8054704163 | 8054707745 | 284 |
| 150 | iso_pu_bacteria | 8054727385 | 8054732811 | 284 |
| 151 | iso_pu_bacteria | 8054734606 | 8054739000 | 284 |
| 152 | 3300003320 | rootH2_10001790 | rootH2_100017902 | 285 |
| 153 | 3300005985 | Ga0081539_10002412 | Ga0081539_1000241215 | 285 |
| 154 | 3300006844 | Ga0075428_100000841 | Ga0075428_10000084110 | 285 |
| 155 | 3300006880 | Ga0075429_100003656 | Ga0075429_1000036568 | 285 |
| 156 | 3300009147 | Ga0114129_10043059 | Ga0114129_100430593 | 285 |
| 157 | 3300013308 | Ga0157375_10398649 | Ga0157375_103986492 | 285 |
| 158 | 3300031456 | Ga0307513_10203035 | Ga0307513_102030352 | 285 |
| 159 | 3300031616 | Ga0307508_10003280 | Ga0307508_1000328013 | 285 |
| 160 | 3300031730 | Ga0307516_10213547 | Ga0307516_102135471 | 285 |
| 161 | 3300031889 | Ga0326468_10000572 | Ga0326468_100005724 | 285 |
| 162 | 3300035112 | Ga0373932_0011817 | Ga0373932_0011817_28_900 | 285 |
| 163 | 3300048911 | Ga0496108_0000029 | Ga0496108_0000029_27614_28486 | 285 |
| 164 | 3300050507 | nmdc:mga05p37_152193_c1 | nmdc:mga05p37_152193_c1_1018_1902 | 285 |
| 165 | 3300050507 | nmdc:mga05p37_240_c1 | nmdc:mga05p37_240_c1_22118_23023 | 285 |
| 166 | 3300050508 | nmdc:mga09592_14_c1 | nmdc:mga09592_14_c1_29039_29944 | 285 |
| 167 | 3300050509 | nmdc:mga0qj67_54_c3 | nmdc:mga0qj67_54_c3_24121_25026 | 285 |
| 168 | 3300050510 | nmdc:mga06r32_18_c3 | nmdc:mga06r32_18_c3_24121_25026 | 285 |
| 169 | iso_pu_bacteria | 2831935698 | 2831936322 | 285 |
| 170 | iso_pu_bacteria | 2832004796 | 2832010542 | 285 |
| 171 | iso_pu_bacteria | 2858902515 | 2858905786 | 285 |
| 172 | iso_pu_bacteria | 2866065130 | 2866066261 | 285 |
| 173 | iso_pu_bacteria | 2867507094 | 2867511746 | 285 |
| 174 | 3300009098 | Ga0105245_10791954 | Ga0105245_107919542 | 286 |
| 175 | 3300025908 | Ga0207643_10199840 | Ga0207643_101998402 | 286 |
| 176 | 3300028794 | Ga0307515_10000356 | Ga0307515_1000035651 | 286 |
| 177 | 3300031730 | Ga0307516_10005714 | Ga0307516_1000571410 | 286 |
| 178 | 3300032126 | Ga0307415_100190237 | Ga0307415_1001902372 | 286 |
| 179 | 3300005985 | Ga0081539_10009043 | Ga0081539_100090439 | 287 |
| 180 | 3300006173 | Ga0070716_100200775 | Ga0070716_1002007752 | 287 |
| 181 | 3300020082 | Ga0206353_11740598 | Ga0206353_117405982 | 287 |
| 182 | 3300032126 | Ga0307415_100050551 | Ga0307415_1000505513 | 287 |
| 183 | 3300032126 | Ga0307415_100137113 | Ga0307415_1001371132 | 287 |
| 184 | 3300044901 | Ga0466960_0028604 | Ga0466960_0028604_543_1439 | 287 |
| 185 | 3300028794 | Ga0307515_10098330 | Ga0307515_100983303 | 288 |
| 186 | 3300030522 | Ga0307512_10030668 | Ga0307512_100306683 | 288 |
| 187 | 3300053146 | Ga0500588_0004241 | Ga0500588_0004241_1037_2017 | 288 |
| 188 | 3300005577 | Ga0068857_100452915 | Ga0068857_1004529151 | 289 |
| 189 | 3300006847 | Ga0075431_100230783 | Ga0075431_1002307832 | 289 |
| 190 | 3300031730 | Ga0307516_10023730 | Ga0307516_100237306 | 289 |
| 191 | 3300031852 | Ga0307410_10069241 | Ga0307410_100692412 | 289 |
| 192 | 3300031901 | Ga0307406_10001529 | Ga0307406_100015292 | 289 |
| 193 | 3300031903 | Ga0307407_10025166 | Ga0307407_100251662 | 289 |
| 194 | 3300032002 | Ga0307416_100093244 | Ga0307416_1000932443 | 289 |
| 195 | 3300032126 | Ga0307415_100001503 | Ga0307415_10000150312 | 289 |
| 196 | 3300049581 | Ga0501047_0056989 | Ga0501047_0056989_1547_2530 | 289 |
| 197 | 3300050510 | nmdc:mga06r32_214045_c1 | nmdc:mga06r32_214045_c1_96_1133 | 289 |
| 198 | 3300003203 | JGI25406J46586_10010653 | JGI25406J46586_100106534 | 291 |
| 199 | 3300005985 | Ga0081539_10000253 | Ga0081539_1000025364 | 291 |
| 200 | 3300005985 | Ga0081539_10078127 | Ga0081539_100781272 | 291 |
| 201 | 3300009101 | Ga0105247_10037184 | Ga0105247_100371842 | 291 |
| 202 | 3300009551 | Ga0105238_10221063 | Ga0105238_102210632 | 291 |
| 203 | 3300014968 | Ga0157379_10170257 | Ga0157379_101702572 | 291 |
| 204 | 3300048915 | Ga0496112_0121642 | Ga0496112_0121642_297_1184 | 291 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2nqj-assembly1.cif.gz_A | crystal structure of escherichia coli endonuclease iv (endo iv) e261q mutant bound to damaged dna | 0.9308 | 7 | 287 |
| 1qum-assembly1.cif.gz_A | crystal structure of escherichia coli endonuclease iv in complex with damaged dna | 0.9305 | 7 | 287 |
| 2nq9-assembly1.cif.gz_A | high resolution crystal structure of escherichia coli endonuclease iv (endo iv) y72a mutant bound to damaged dna | 0.9304 | 7 | 287 |
| 4k1g-assembly2.cif.gz_B | structure of e. coli nfo(endo iv)-h69a mutant bound to a cleaved dna duplex containing a alphada:t basepair | 0.9252 | 7 | 287 |
| 2nqj-assembly1.cif.gz_A | crystal structure of escherichia coli endonuclease iv (endo iv) e261q mutant bound to damaged dna | 0.9244 | 7 | 287 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1qumA00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes | 0.9305 | 7 | 287 | 3.20.20.150 |
| af_Q966U0_262_539_3.20.20.150 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes | 0.9268 | 10 | 287 | 3.20.20.150 |
| 1qumA00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes | 0.9241 | 7 | 287 | 3.20.20.150 |
| af_P9WQ13_1_251_3.20.20.150 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes | 0.9205 | 9 | 288 | 3.20.20.150 |
| af_Q10002_117_395_3.20.20.150 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes | 0.9194 | 7 | 287 | 3.20.20.150 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A0L8QK90-F1-model_v4 | deleted | 0.9916 | 7 | 117 |
|
| AF-A0A2W4IQX3-F1-model_v4 | Endonuclease IV | 0.9908 | 8 | 153 |
GO:0003677
GO:0003906 GO:0004519 GO:0006284 GO:0008081 GO:0008270 |
| AF-A0A2W4ISL0-F1-model_v4 | Endonuclease IV | 0.9889 | 81 | 288 |
GO:0003677
GO:0003906 GO:0004519 GO:0006284 GO:0008081 GO:0008270 |
| AF-A0A6N7GFH0-F1-model_v4 | Probable endonuclease 4 (EC 3.1.21.2) (Endodeoxyribonuclease IV) (Endonuclease IV) | 0.988 | 6 | 290 |
GO:0003677
GO:0003906 GO:0006284 GO:0008081 GO:0008270 GO:0008833 |
| AF-A0A852QTN0-F1-model_v4 | deleted | 0.9854 | 7 | 289 |
|
Predicted Structure (AlphaFold2)
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