F312237

General Info

Members Datasets Scaffolds Average Seq Length
204 86 203 246

Family's Representative Sequence

Representative Sequence 3300005518|Ga0070699_100026066|Ga0070699_1000260663
Length 274
Sequence MMQVGLPIRLPTSDLASPWLKQSKIISMNSLVASIRERYQYTLDQIAEAARKSNRDPKEIRLVVVTKSQPVDVAEAAIEAGVRILGENYPEEGVMKIQSLAWQSGVEWHMIGHVQSRKARLVADHFALLHSLDSLKLAQRLNRFASESNHILLVLLEFNVGGEESKSGWNAADEARWNMLLPDIAAILDLPNVRVHGLMTMPPLGTEPESSRRFFQRLRLLRDHLATQYPTADWRELSMGTSADYAVAVEEGATLVRVGTAIVGARKYKSENKA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2928515477 Acinetobacter bereziniae 1375 Isolate Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
14 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
31 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
32 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
33 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
34 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
44 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
45 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
46 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
47 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
48 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
49 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
52 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
53 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
56 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
57 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
58 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
59 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
60 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
61 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
62 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
63 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
66 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
67 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
68 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
71 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
72 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
73 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
74 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
77 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
78 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
79 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
80 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
81 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
82 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
83 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
84 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
85 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
86 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.51
Metatranscriptomes 0
Isolates 0.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.53
Stem 0
Stem Tuber 0
Unclassified 1.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1913544 2162886007 Bacteria 3661
2 JGI25406J46586_10000640 3300003203 Bacteria 16373
3 Ga0065704_10070377 3300005289 Bacteria 28140
4 Ga0065712_10258724 3300005290 Unclassified 938
5 Ga0065707_10000768 3300005295 Bacteria 12443
6 Ga0065707_10003492 3300005295 Bacteria 5962
7 Ga0065707_10081987 3300005295 Bacteria 26103
8 Ga0065707_10083293 3300005295 Bacteria 9627
9 Ga0070709_10302968 3300005434 Bacteria 1168
10 Ga0070694_100062091 3300005444 Unclassified 2552
11 Ga0070707_100147727 3300005468 Bacteria 2288
12 Ga0070698_100050908 3300005471 Unclassified 4219
13 Ga0070698_100247260 3300005471 Bacteria 1716
14 Ga0070698_100533290 3300005471 Bacteria 1112
15 Ga0070699_100001469 3300005518 Bacteria 21556
16 Ga0070699_100026066 3300005518 Bacteria 5042
17 Ga0070699_100098684 3300005518 Bacteria 2559
18 Ga0070699_100146658 3300005518 Bacteria 2085
19 Ga0070697_100530356 3300005536 Bacteria 1031
20 Ga0070696_100151254 3300005546 Unclassified 1704
21 Ga0070704_100105364 3300005549 Unclassified 2134
22 Ga0070704_100128875 3300005549 Bacteria 1957
23 Ga0068857_100097389 3300005577 Bacteria 2637
24 Ga0068857_100438472 3300005577 Unclassified 1220
25 Ga0068859_100054961 3300005617 Bacteria 4006
26 Ga0068859_100248311 3300005617 Bacteria 1870
27 Ga0068861_100419478 3300005719 Bacteria 1192
28 Ga0068862_100048496 3300005844 Unclassified 3626
29 Ga0068862_100062485 3300005844 Unclassified 3203
30 Ga0068862_100117606 3300005844 Bacteria 2339
31 Ga0081539_10003111 3300005985 Bacteria 21226
32 Ga0081539_10013995 3300005985 Bacteria 5980
33 Ga0075430_100149003 3300006846 Unclassified 1948
34 Ga0075431_100072063 3300006847 Unclassified 3565
35 Ga0075433_10220276 3300006852 Bacteria 1686
36 Ga0075429_100005207 3300006880 Bacteria 11184
37 Ga0075429_100043235 3300006880 Bacteria 3920
38 Ga0075429_100070321 3300006880 Bacteria 3047
39 Ga0075429_100519987 3300006880 Bacteria 1043
40 Ga0097620_100054960 3300006931 Bacteria 4006
41 Ga0097620_100248294 3300006931 Bacteria 1870
42 Ga0105240_10471736 3300009093 Unclassified 1400
43 Ga0114129_10002036 3300009147 Bacteria 27722
44 Ga0114129_10010730 3300009147 Bacteria 13061
45 Ga0114129_10013560 3300009147 Bacteria 11613
46 Ga0114129_10020412 3300009147 Bacteria 9423
47 Ga0114129_10115319 3300009147 Bacteria 3703
48 Ga0114129_10232173 3300009147 Bacteria 2484
49 Ga0114129_10851744 3300009147 Unclassified 1159
50 Ga0105243_10036292 3300009148 Unclassified 3826
51 Ga0105243_10097667 3300009148 Bacteria 2432
52 Ga0105241_10528563 3300009174 Unclassified 1056
53 Ga0105237_10201844 3300009545 Unclassified 1989
54 Ga0105249_10010673 3300009553 Bacteria 8069
55 Ga0105249_10168448 3300009553 Bacteria 2122
56 Ga0105249_10188987 3300009553 Bacteria 2009
57 Ga0105246_10145815 3300011119 Bacteria 1786
58 Ga0157380_10069859 3300014326 Bacteria 2836
59 Ga0213872_10007434 3300021361 Bacteria 5391
60 Ga0207684_10457684 3300025910 Unclassified 1095
61 Ga0207646_10112815 3300025922 Bacteria 2440
62 Ga0207681_10149465 3300025923 Bacteria 1749
63 Ga0207709_10068446 3300025935 Unclassified 2244
64 Ga0207670_10060583 3300025936 Unclassified 2579
65 Ga0207708_10371697 3300026075 Unclassified 1177
66 Ga0207676_10137939 3300026095 Bacteria 2084
67 Ga0207674_10063762 3300026116 Bacteria 3718
68 Ga0268265_10023275 3300028380 Unclassified 4366
69 Ga0268265_10111737 3300028380 Unclassified 2232
70 Ga0268265_10253846 3300028380 Bacteria 1559
71 Ga0265334_10022282 3300028573 Bacteria 2583
72 Ga0265318_10008902 3300028577 Bacteria 4446
73 Ga0265330_10160094 3300031235 Bacteria 956
74 Ga0265332_10104569 3300031238 Bacteria 1194
75 Ga0265320_10049914 3300031240 Bacteria 2036
76 Ga0265320_10152726 3300031240 Bacteria 1042
77 Ga0265340_10028745 3300031247 Bacteria 2795
78 Ga0265331_10060341 3300031250 Bacteria 1792
79 Ga0265327_10024454 3300031251 Unclassified 3549
80 Ga0265316_10107909 3300031344 Bacteria 2111
81 Ga0316575_10000698 3300031665 Bacteria 10019
82 Ga0316575_10009283 3300031665 Unclassified 3600
83 Ga0316579_10005017 3300031691 Bacteria 5312
84 Ga0316579_10006081 3300031691 Bacteria 4905
85 Ga0316579_10061576 3300031691 Unclassified 1767
86 Ga0316579_10102459 3300031691 Bacteria 1371
87 Ga0316579_10152570 3300031691 Unclassified 1115
88 Ga0316576_10141473 3300031727 Bacteria 1812
89 Ga0316576_10145024 3300031727 Bacteria 1788
90 Ga0316578_10012691 3300031728 Bacteria 4446
91 Ga0316578_10023336 3300031728 Bacteria 3461
92 Ga0316578_10026560 3300031728 Unclassified 3267
93 Ga0316578_10143136 3300031728 Bacteria 1440
94 Ga0316577_10001756 3300031733 Bacteria 10449
95 Ga0316577_10002645 3300031733 Bacteria 8897
96 Ga0316577_10006405 3300031733 Bacteria 6215
97 Ga0316577_10007031 3300031733 Bacteria 5983
98 Ga0316577_10008213 3300031733 Bacteria 5589
99 Ga0316577_10017356 3300031733 Bacteria 3972
100 Ga0316577_10031102 3300031733 Unclassified 2982
101 Ga0316577_10057954 3300031733 Unclassified 2162
102 Ga0307413_10276319 3300031824 Bacteria 1261
103 Ga0307407_10075169 3300031903 Unclassified 2024
104 Ga0307415_100443340 3300032126 Bacteria 1120
105 Ga0316585_10002743 3300032137 Bacteria 4780
106 Ga0316574_0012601 3300035398 Unclassified 4840
107 Ga0316574_0026214 3300035398 Unclassified 3504
108 Ga0316574_0065886 3300035398 Bacteria 2281
109 Ga0316582_0004017 3300036647 Bacteria 7352
110 Ga0316582_0004733 3300036647 Bacteria 6928
111 Ga0316582_0007719 3300036647 Bacteria 5744
112 Ga0316582_0008375 3300036647 Bacteria 5555
113 Ga0316582_0033789 3300036647 Bacteria 3144
114 Ga0316582_0072927 3300036647 Bacteria 2227
115 Ga0316582_0449759 3300036647 Bacteria 888
116 Ga0316582_0505889 3300036647 Unclassified 832
117 Ga0316584_0000444 3300036712 Bacteria 21469
118 Ga0316584_0004601 3300036712 Bacteria 9145
119 Ga0316584_0015331 3300036712 Bacteria 5480
120 Ga0316584_0025891 3300036712 Unclassified 4305
121 Ga0316584_0032691 3300036712 Unclassified 3851
122 Ga0316584_0061621 3300036712 Bacteria 2809
123 Ga0316584_0067148 3300036712 Bacteria 2688
124 Ga0316584_0068993 3300036712 Unclassified 2650
125 Ga0395905_0006727 3300037471 Bacteria 11510
126 Ga0316581_0008674 3300037588 Bacteria 2775
127 Ga0316581_0066990 3300037588 Bacteria 1102
128 Ga0316581_0142824 3300037588 Bacteria 738
129 Ga0400484_02018 3300038725 Bacteria 1768
130 Ga0400490_55933 3300038726 Unclassified 1921
131 Ga0400489_51469 3300039093 Bacteria 2419
132 Ga0436361_0806160 3300039447 Bacteria 6622
133 Ga0451577_0000523 3300042876 Bacteria 63915
134 Ga0451577_0053702 3300042876 Bacteria 3596
135 Ga0451577_0100391 3300042876 Bacteria 2585
136 Ga0451577_0181237 3300042876 Unclassified 1899
137 Ga0451577_0202964 3300042876 Bacteria 1790
138 Ga0451577_0297930 3300042876 Bacteria 1461
139 Ga0451577_0498804 3300042876 Unclassified 1105
140 Ga0453683_0002551 3300044673 Bacteria 14041
141 Ga0453683_0026785 3300044673 Unclassified 3660
142 Ga0453683_0055079 3300044673 Unclassified 2489
143 Ga0453683_0164858 3300044673 Bacteria 1402
144 Ga0453683_0232475 3300044673 Unclassified 1173
145 Ga0453683_0332044 3300044673 Bacteria 975
146 Ga0453684_0000044 3300044712 Bacteria 585643
147 Ga0453684_0000055 3300044712 Bacteria 532014
148 Ga0453684_0000528 3300044712 Bacteria 146005
149 Ga0453684_0000720 3300044712 Bacteria 116865
150 Ga0453684_0000951 3300044712 Bacteria 95417
151 Ga0453684_0002233 3300044712 Bacteria 48026
152 Ga0453684_0002344 3300044712 Bacteria 46315
153 Ga0453684_0003033 3300044712 Bacteria 39050
154 Ga0453684_0005126 3300044712 Bacteria 26372
155 Ga0453684_0006211 3300044712 Bacteria 22912
156 Ga0453684_0017849 3300044712 Bacteria 10951
157 Ga0453684_0122123 3300044712 Bacteria 3143
158 Ga0453684_0160144 3300044712 Bacteria 2663
159 Ga0453684_0212464 3300044712 Bacteria 2248
160 Ga0453684_0264769 3300044712 Unclassified 1967
161 Ga0453684_0356237 3300044712 Bacteria 1648
162 Ga0453684_0373819 3300044712 Bacteria 1602
163 Ga0453684_0380124 3300044712 Bacteria 1586
164 Ga0453684_0438601 3300044712 Bacteria 1456
165 Ga0453684_0859191 3300044712 Unclassified 974
166 Ga0453684_0885526 3300044712 Unclassified 957
167 Ga0451576_0000009 3300045051 Bacteria 712666
168 Ga0451576_0005416 3300045051 Bacteria 16025
169 Ga0451576_0010527 3300045051 Bacteria 10600
170 Ga0451576_0012761 3300045051 Bacteria 9429
171 Ga0451576_0172990 3300045051 Bacteria 2254
172 Ga0451576_0237294 3300045051 Bacteria 1904
173 Ga0451576_0487333 3300045051 Unclassified 1295
174 Ga0501036_0652648 3300049572 Bacteria 871
175 Ga0501040_0051814 3300049576 Bacteria 2808
176 Ga0501071_0067516 3300049587 Unclassified 2601
177 Ga0501071_0230466 3300049587 Bacteria 1395
178 Ga0501072_0124345 3300049588 Unclassified 2055
179 Ga0501073_0004329 3300049589 Bacteria 10656
180 Ga0501073_0060586 3300049589 Bacteria 2641
181 Ga0501073_0092953 3300049589 Bacteria 2096
182 Ga0501073_0164591 3300049589 Bacteria 1536
183 Ga0501075_0518485 3300049591 Bacteria 910
184 Ga0501076_0071569 3300049592 Unclassified 2774
185 Ga0501076_0386792 3300049592 Bacteria 1150
186 nmdc:mga05p37_104974_c1 3300050507 Bacteria 3476
187 nmdc:mga05p37_14603_c1 3300050507 Bacteria 2968
188 nmdc:mga05p37_160546_c1 3300050507 Bacteria 2746
189 nmdc:mga05p37_190203_c1 3300050507 Bacteria 2493
190 nmdc:mga05p37_210652_c1 3300050507 Bacteria 2350
191 nmdc:mga05p37_21263_c1 3300050507 Bacteria 7854
192 nmdc:mga05p37_230804_c1 3300050507 Bacteria 2230
193 nmdc:mga05p37_45394_c1 3300050507 Bacteria 5404
194 nmdc:mga05p37_772465_c1 3300050507 Unclassified 1055
195 nmdc:mga09592_274723_c1 3300050508 Bacteria 1462
196 nmdc:mga09592_4331_c1 3300050508 Bacteria 11472
197 nmdc:mga09592_67324_c1 3300050508 Bacteria 3037
198 nmdc:mga06r32_168796_c1 3300050510 Bacteria 2171
199 nmdc:mga0a205_151377_c1 3300050515 Bacteria 2219
200 nmdc:mga0a205_24153_c1 3300050515 Bacteria 5773
201 Ga0501084_0024453 3300054114 Bacteria 5039
202 Ga0501082_0441615 3300060353 Bacteria 1137
203 Ga0501082_0778734 3300060353 Unclassified 837

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300036647 Ga0316582_0505889 Ga0316582_0505889_121_732 195
2 3300049589 Ga0501073_0164591 Ga0501073_0164591_24_680 218
3 3300037588 Ga0316581_0142824 Ga0316581_0142824_44_709 221
4 3300005434 Ga0070709_10302968 Ga0070709_103029682 223
5 3300009093 Ga0105240_10471736 Ga0105240_104717362 223
6 3300009174 Ga0105241_10528563 Ga0105241_105285632 223
7 3300009545 Ga0105237_10201844 Ga0105237_102018442 223
8 3300005518 Ga0070699_100098684 Ga0070699_1000986842 226
9 3300005536 Ga0070697_100530356 Ga0070697_1005303561 226
10 3300037471 Ga0395905_0006727 Ga0395905_0006727_2553_3266 228
11 3300005546 Ga0070696_100151254 Ga0070696_1001512543 229
12 3300009147 Ga0114129_10010730 Ga0114129_100107308 229
13 3300021361 Ga0213872_10007434 Ga0213872_100074341 229
14 3300039447 Ga0436361_0806160 Ga0436361_0806160_1214_1924 229
15 3300042876 Ga0451577_0000523 Ga0451577_0000523_26613_27317 229
16 3300042876 Ga0451577_0181237 Ga0451577_0181237_328_1044 229
17 3300044673 Ga0453683_0055079 Ga0453683_0055079_1681_2397 229
18 3300044712 Ga0453684_0000951 Ga0453684_0000951_59337_60041 229
19 3300045051 Ga0451576_0010527 Ga0451576_0010527_8443_9147 229
20 3300045051 Ga0451576_0487333 Ga0451576_0487333_129_845 229
21 3300050507 nmdc:mga05p37_21263_c1 nmdc:mga05p37_21263_c1_4494_5198 229
22 3300028577 Ga0265318_10008902 Ga0265318_100089023 230
23 3300031240 Ga0265320_10152726 Ga0265320_101527262 230
24 3300005617 Ga0068859_100248311 Ga0068859_1002483113 231
25 3300005844 Ga0068862_100062485 Ga0068862_1000624853 231
26 3300006931 Ga0097620_100248294 Ga0097620_1002482943 231
27 3300009553 Ga0105249_10010673 Ga0105249_100106737 231
28 3300028380 Ga0268265_10023275 Ga0268265_100232754 231
29 3300049576 Ga0501040_0051814 Ga0501040_0051814_2098_2796 231
30 3300036712 Ga0316584_0067148 Ga0316584_0067148_1525_2226 233
31 3300039093 Ga0400489_51469 Ga0400489_51469_880_1608 234
32 3300049589 Ga0501073_0060586 Ga0501073_0060586_990_1697 234
33 3300060353 Ga0501082_0441615 Ga0501082_0441615_193_900 234
34 3300049589 Ga0501073_0092953 Ga0501073_0092953_943_1659 235
35 3300054114 Ga0501084_0024453 Ga0501084_0024453_2125_2835 235
36 3300005719 Ga0068861_100419478 Ga0068861_1004194781 236
37 3300009553 Ga0105249_10168448 Ga0105249_101684481 236
38 3300031665 Ga0316575_10000698 Ga0316575_100006983 236
39 3300031691 Ga0316579_10006081 Ga0316579_100060813 236
40 3300031691 Ga0316579_10061576 Ga0316579_100615762 236
41 3300031727 Ga0316576_10145024 Ga0316576_101450241 236
42 3300031728 Ga0316578_10023336 Ga0316578_100233363 236
43 3300031728 Ga0316578_10143136 Ga0316578_101431362 236
44 3300031733 Ga0316577_10001756 Ga0316577_100017566 236
45 3300031733 Ga0316577_10002645 Ga0316577_100026455 236
46 3300031733 Ga0316577_10006405 Ga0316577_100064053 236
47 3300031733 Ga0316577_10017356 Ga0316577_100173563 236
48 3300031733 Ga0316577_10057954 Ga0316577_100579542 236
49 3300031824 Ga0307413_10276319 Ga0307413_102763192 236
50 3300032137 Ga0316585_10002743 Ga0316585_100027434 236
51 3300035398 Ga0316574_0065886 Ga0316574_0065886_293_1027 236
52 3300036647 Ga0316582_0004017 Ga0316582_0004017_5438_6172 236
53 3300036647 Ga0316582_0033789 Ga0316582_0033789_172_906 236
54 3300036647 Ga0316582_0072927 Ga0316582_0072927_125_859 236
55 3300036712 Ga0316584_0000444 Ga0316584_0000444_18454_19188 236
56 3300036712 Ga0316584_0004601 Ga0316584_0004601_113_847 236
57 3300036712 Ga0316584_0061621 Ga0316584_0061621_228_962 236
58 3300036712 Ga0316584_0068993 Ga0316584_0068993_189_923 236
59 3300037588 Ga0316581_0008674 Ga0316581_0008674_1067_1801 236
60 3300037588 Ga0316581_0066990 Ga0316581_0066990_245_979 236
61 iso_pu_bacteria 2928515477 2928515598 236
62 3300006847 Ga0075431_100072063 Ga0075431_1000720633 238
63 3300009147 Ga0114129_10851744 Ga0114129_108517441 238
64 3300031728 Ga0316578_10012691 Ga0316578_100126914 238
65 3300050507 nmdc:mga05p37_772465_c1 nmdc:mga05p37_772465_c1_202_939 238
66 3300038725 Ga0400484_02018 Ga0400484_02018_473_1192 239
67 3300038726 Ga0400490_55933 Ga0400490_55933_218_937 239
68 3300044712 Ga0453684_0000528 Ga0453684_0000528_105337_106062 239
69 3300044712 Ga0453684_0002344 Ga0453684_0002344_21030_21755 239
70 3300031733 Ga0316577_10008213 Ga0316577_100082133 240
71 3300035398 Ga0316574_0026214 Ga0316574_0026214_896_1618 240
72 3300036712 Ga0316584_0025891 Ga0316584_0025891_2219_2944 240
73 3300031691 Ga0316579_10005017 Ga0316579_100050174 241
74 3300031691 Ga0316579_10152570 Ga0316579_101525701 241
75 3300031727 Ga0316576_10141473 Ga0316576_101414733 241
76 3300031733 Ga0316577_10031102 Ga0316577_100311022 241
77 3300036647 Ga0316582_0449759 Ga0316582_0449759_30_758 241
78 3300036712 Ga0316584_0015331 Ga0316584_0015331_151_900 241
79 3300042876 Ga0451577_0202964 Ga0451577_0202964_970_1698 241
80 3300042876 Ga0451577_0297930 Ga0451577_0297930_406_1134 241
81 3300044712 Ga0453684_0000044 Ga0453684_0000044_287603_288331 241
82 3300044712 Ga0453684_0000720 Ga0453684_0000720_59928_60662 241
83 3300044712 Ga0453684_0017849 Ga0453684_0017849_6339_7067 241
84 3300044712 Ga0453684_0356237 Ga0453684_0356237_142_870 241
85 3300044712 Ga0453684_0885526 Ga0453684_0885526_146_874 241
86 3300045051 Ga0451576_0237294 Ga0451576_0237294_166_894 241
87 3300049589 Ga0501073_0004329 Ga0501073_0004329_2904_3632 241
88 3300009147 Ga0114129_10232173 Ga0114129_102321733 242
89 3300031240 Ga0265320_10049914 Ga0265320_100499143 242
90 3300031251 Ga0265327_10024454 Ga0265327_100244545 242
91 3300031691 Ga0316579_10102459 Ga0316579_101024592 242
92 3300031733 Ga0316577_10007031 Ga0316577_100070315 242
93 3300036647 Ga0316582_0004733 Ga0316582_0004733_3315_4067 242
94 3300036647 Ga0316582_0007719 Ga0316582_0007719_3608_4360 242
95 3300044673 Ga0453683_0026785 Ga0453683_0026785_1620_2354 242
96 3300044673 Ga0453683_0164858 Ga0453683_0164858_366_1100 242
97 3300044712 Ga0453684_0002233 Ga0453684_0002233_31910_32638 242
98 3300044712 Ga0453684_0438601 Ga0453684_0438601_666_1406 242
99 3300045051 Ga0451576_0000009 Ga0451576_0000009_458266_459000 242
100 3300045051 Ga0451576_0005416 Ga0451576_0005416_13860_14594 242
101 3300050507 nmdc:mga05p37_230804_c1 nmdc:mga05p37_230804_c1_803_1573 242
102 3300031665 Ga0316575_10009283 Ga0316575_100092833 243
103 3300031728 Ga0316578_10026560 Ga0316578_100265604 243
104 3300035398 Ga0316574_0012601 Ga0316574_0012601_3578_4312 243
105 3300036647 Ga0316582_0008375 Ga0316582_0008375_4526_5260 243
106 3300036712 Ga0316584_0032691 Ga0316584_0032691_1092_1826 243
107 3300042876 Ga0451577_0100391 Ga0451577_0100391_688_1422 243
108 3300044712 Ga0453684_0005126 Ga0453684_0005126_5866_6600 243
109 3300044712 Ga0453684_0212464 Ga0453684_0212464_636_1394 243
110 3300044712 Ga0453684_0380124 Ga0453684_0380124_566_1303 244
111 3300049587 Ga0501071_0230466 Ga0501071_0230466_361_1110 244
112 3300005295 Ga0065707_10000768 Ga0065707_100007689 245
113 3300028573 Ga0265334_10022282 Ga0265334_100222822 245
114 3300031235 Ga0265330_10160094 Ga0265330_101600942 245
115 3300031238 Ga0265332_10104569 Ga0265332_101045692 245
116 3300031247 Ga0265340_10028745 Ga0265340_100287453 245
117 3300031250 Ga0265331_10060341 Ga0265331_100603412 245
118 3300031344 Ga0265316_10107909 Ga0265316_101079093 245
119 3300044712 Ga0453684_0003033 Ga0453684_0003033_4143_4880 245
120 3300044712 Ga0453684_0006211 Ga0453684_0006211_12753_13490 245
121 3300044712 Ga0453684_0859191 Ga0453684_0859191_143_880 245
122 3300045051 Ga0451576_0172990 Ga0451576_0172990_106_846 245
123 3300044712 Ga0453684_0000055 Ga0453684_0000055_447261_448001 246
124 3300044712 Ga0453684_0373819 Ga0453684_0373819_611_1351 246
125 3300049587 Ga0501071_0067516 Ga0501071_0067516_146_922 246
126 3300049588 Ga0501072_0124345 Ga0501072_0124345_146_922 246
127 3300049592 Ga0501076_0071569 Ga0501076_0071569_1031_1807 246
128 3300060353 Ga0501082_0778734 Ga0501082_0778734_41_817 246
129 3300005290 Ga0065712_10258724 Ga0065712_102587241 247
130 3300005295 Ga0065707_10083293 Ga0065707_100832938 247
131 3300005444 Ga0070694_100062091 Ga0070694_1000620912 247
132 3300005468 Ga0070707_100147727 Ga0070707_1001477272 247
133 3300005471 Ga0070698_100247260 Ga0070698_1002472601 247
134 3300005471 Ga0070698_100533290 Ga0070698_1005332901 247
135 3300005518 Ga0070699_100026066 Ga0070699_1000260663 247
136 3300005549 Ga0070704_100105364 Ga0070704_1001053643 247
137 3300005577 Ga0068857_100438472 Ga0068857_1004384722 247
138 3300005844 Ga0068862_100117606 Ga0068862_1001176062 247
139 3300005985 Ga0081539_10013995 Ga0081539_100139956 247
140 3300006846 Ga0075430_100149003 Ga0075430_1001490034 247
141 3300006880 Ga0075429_100005207 Ga0075429_1000052075 247
142 3300006880 Ga0075429_100043235 Ga0075429_1000432354 247
143 3300006880 Ga0075429_100070321 Ga0075429_1000703213 247
144 3300006880 Ga0075429_100519987 Ga0075429_1005199872 247
145 3300009147 Ga0114129_10002036 Ga0114129_100020369 247
146 3300009147 Ga0114129_10020412 Ga0114129_100204122 247
147 3300009147 Ga0114129_10115319 Ga0114129_101153193 247
148 3300009148 Ga0105243_10036292 Ga0105243_100362922 247
149 3300009148 Ga0105243_10097667 Ga0105243_100976674 247
150 3300009553 Ga0105249_10188987 Ga0105249_101889874 247
151 3300014326 Ga0157380_10069859 Ga0157380_100698593 247
152 3300025922 Ga0207646_10112815 Ga0207646_101128154 247
153 3300025935 Ga0207709_10068446 Ga0207709_100684464 247
154 3300026075 Ga0207708_10371697 Ga0207708_103716972 247
155 3300026116 Ga0207674_10063762 Ga0207674_100637623 247
156 3300028380 Ga0268265_10253846 Ga0268265_102538462 247
157 3300042876 Ga0451577_0498804 Ga0451577_0498804_298_1062 247
158 3300044673 Ga0453683_0002551 Ga0453683_0002551_1765_2511 247
159 3300044673 Ga0453683_0232475 Ga0453683_0232475_16_762 247
160 3300044712 Ga0453684_0160144 Ga0453684_0160144_776_1519 247
161 3300044712 Ga0453684_0264769 Ga0453684_0264769_62_826 247
162 3300045051 Ga0451576_0012761 Ga0451576_0012761_3180_3926 247
163 3300049572 Ga0501036_0652648 Ga0501036_0652648_58_801 247
164 3300049592 Ga0501076_0386792 Ga0501076_0386792_247_990 247
165 3300050507 nmdc:mga05p37_104974_c1 nmdc:mga05p37_104974_c1_280_1023 247
166 3300050507 nmdc:mga05p37_14603_c1 nmdc:mga05p37_14603_c1_1842_2591 247
167 3300050507 nmdc:mga05p37_210652_c1 nmdc:mga05p37_210652_c1_458_1231 247
168 3300050507 nmdc:mga05p37_45394_c1 nmdc:mga05p37_45394_c1_1402_2145 247
169 3300050508 nmdc:mga09592_274723_c1 nmdc:mga09592_274723_c1_505_1248 247
170 3300050508 nmdc:mga09592_4331_c1 nmdc:mga09592_4331_c1_3590_4339 247
171 3300050508 nmdc:mga09592_67324_c1 nmdc:mga09592_67324_c1_1104_1847 247
172 3300050510 nmdc:mga06r32_168796_c1 nmdc:mga06r32_168796_c1_533_1276 247
173 3300005518 Ga0070699_100001469 Ga0070699_10000146930 248
174 3300025910 Ga0207684_10457684 Ga0207684_104576842 248
175 3300042876 Ga0451577_0053702 Ga0451577_0053702_2511_3257 248
176 3300044712 Ga0453684_0122123 Ga0453684_0122123_1755_2501 248
177 3300050507 nmdc:mga05p37_160546_c1 nmdc:mga05p37_160546_c1_1234_1989 248
178 3300050515 nmdc:mga0a205_151377_c1 nmdc:mga0a205_151377_c1_595_1350 248
179 3300003203 JGI25406J46586_10000640 JGI25406J46586_100006409 249
180 3300005295 Ga0065707_10003492 Ga0065707_100034926 249
181 3300005471 Ga0070698_100050908 Ga0070698_1000509082 249
182 3300005518 Ga0070699_100146658 Ga0070699_1001466584 249
183 3300005549 Ga0070704_100128875 Ga0070704_1001288753 249
184 3300005577 Ga0068857_100097389 Ga0068857_1000973892 249
185 3300005617 Ga0068859_100054961 Ga0068859_1000549614 249
186 3300005844 Ga0068862_100048496 Ga0068862_1000484964 249
187 3300005985 Ga0081539_10003111 Ga0081539_1000311118 249
188 3300006852 Ga0075433_10220276 Ga0075433_102202762 249
189 3300006931 Ga0097620_100054960 Ga0097620_1000549604 249
190 3300009147 Ga0114129_10013560 Ga0114129_100135605 249
191 3300011119 Ga0105246_10145815 Ga0105246_101458153 249
192 3300025923 Ga0207681_10149465 Ga0207681_101494652 249
193 3300025936 Ga0207670_10060583 Ga0207670_100605833 249
194 3300026095 Ga0207676_10137939 Ga0207676_101379393 249
195 3300028380 Ga0268265_10111737 Ga0268265_101117372 249
196 3300031903 Ga0307407_10075169 Ga0307407_100751692 249
197 3300032126 Ga0307415_100443340 Ga0307415_1004433402 249
198 3300044673 Ga0453683_0332044 Ga0453683_0332044_26_823 249
199 3300049591 Ga0501075_0518485 Ga0501075_0518485_17_793 249
200 3300050507 nmdc:mga05p37_190203_c1 nmdc:mga05p37_190203_c1_806_1576 249
201 3300050515 nmdc:mga0a205_24153_c1 nmdc:mga0a205_24153_c1_2145_2915 249
202 2162886007 SwRhRL2b_contig_1913544 SwRhRL2b_0664.00002300 250
203 3300005289 Ga0065704_10070377 Ga0065704_1007037710 250
204 3300005295 Ga0065707_10081987 Ga0065707_100819877 250

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

39

267

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
7f8e-assembly3.cif.gz_C crystal structure of yggs from fusobacterium nucleatum 0.9394 7 235
6kzw-assembly2.cif.gz_B crystal structure of yggs family pyridoxal phosphate-dependent enzyme pipy from fusobacterium nucleatum 0.9392 7 236
7ygf-assembly3.cif.gz_C crystal structure of yggs from fusobacterium nucleatum 0.9391 7 235
3sy1-assembly1.cif.gz_A crystal structure of engineered protein. northeast structural genomics consortium target or70 0.9324 7 238
7ubp-assembly1.cif.gz_A the crystal structure of the k36a/k137a double mutant of e. coli yggs in complex with plp 0.9322 8 238
ID Description Score Start End Superfamily
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9318 8 238 3.20.20.10
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9239 8 238 3.20.20.10
af_Q2FZ87_1_222_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.922 9 240 3.20.20.10
3r79B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9159 8 246 3.20.20.10
af_Q2FZ87_1_222_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.914 9 240 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A2M7B543-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9933 2 240 GO:0030170
AF-A0A419EA95-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9914 1 241 GO:0030170
AF-A0A7C7RPQ6-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9884 3 240 GO:0030170
AF-A0A1F8SN01-F1-model_v4 YggS family pyridoxal phosphate enzyme 0.9883 90 240 GO:0030170
AF-A0A1F8TTV0-F1-model_v4 YggS family pyridoxal phosphate enzyme 0.9875 24 242 GO:0030170

Feature Viewer

pLDDT pTM Quality
92.58 0.89 High
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Predicted Structure (AlphaFold2)

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