F311146

General Info

Members Datasets Scaffolds Average Seq Length
203 149 406 321

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10159683|Ga0105240_101596832
Length 372
Sequence MGEFQLFPEAASVGATQVDHLYWFLCAVGIVFTALIFLCVFIFAIKYRRKSEDEIPHHVEGSMKLEIVWSVIPFLIMLVMFFWGAKVYFTNYTPPPNALDIYVTGKQWMWKVQYPGGQREINELHVPINRPVKLTLASEDVIHSFYVPAFRLKRDVVPGRFNTEWFTATKPGRYHLFCAEYCGTEHSGMIGWVTVMEPADYQNWLAGGGATGSMAQQGSQLFQQLGCSTCHLQDEQGRCPILKGVYGSRVLLDDGRTVLADDAYVRESILNPNAKIVAGFKPDIMPTFQGQVSEEQLLQLIVYVKSLAVKPNSPMSAAQTGSSEGMHRTGGVNAPSQAAGGNEITTQPARESAFQQIHRRMTKPEGKPEEKK

Samples

Sample ID Description Type Environment
1 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
13 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
58 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
59 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
60 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
61 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
83 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
84 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
85 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
86 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
89 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
90 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
91 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
92 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
93 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
94 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
95 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
96 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
99 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
100 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
101 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
102 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
103 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
104 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
120 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
121 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
122 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
123 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
127 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
128 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
129 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
130 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
131 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
133 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
134 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
135 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
136 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
137 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
138 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
139 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
140 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
141 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
142 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
143 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
144 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
145 2902330777 Methylobacterium sp. 2A Isolate Unclassified
146 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
147 641522639 Methylobacterium sp. 4-46 Isolate Nodule
148 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
149 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.06
Metatranscriptomes 0.49
Isolates 3.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.48
Nodule 1.48
Rhizoplane 0.99
Rhizosphere 88.67
Stem 0
Stem Tuber 0
Unclassified 2.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105240_10159683 3300009093 Bacteria 2679
2 MRS1b_contig_4244159 2162886011 Bacteria 1311
3 rootH1_10093661 3300003316 Bacteria 1495
4 rootH2_10000135 3300003320 Bacteria 6448
5 Ga0055540_1030770 3300003792 Bacteria 1241
6 Ga0065712_10071469 3300005290 Bacteria 5247
7 Ga0070658_10004162 3300005327 Bacteria 11845
8 Ga0070658_10039322 3300005327 Bacteria 3815
9 Ga0070680_100036159 3300005336 Bacteria 3989
10 Ga0070660_100009214 3300005339 Bacteria 6936
11 Ga0070661_100016978 3300005344 Bacteria 5156
12 Ga0070673_100095962 3300005364 Bacteria 2433
13 Ga0070688_100243151 3300005365 Bacteria 1278
14 Ga0070709_10038016 3300005434 Bacteria 2944
15 Ga0070714_100117552 3300005435 Bacteria 2362
16 Ga0070713_100013550 3300005436 Bacteria 6026
17 Ga0070713_100041968 3300005436 Bacteria 3730
18 Ga0070711_100056998 3300005439 Bacteria 2703
19 Ga0070708_100113328 3300005445 Bacteria 2494
20 Ga0070663_100432753 3300005455 Bacteria 1081
21 Ga0070662_100184384 3300005457 Bacteria 1647
22 Ga0070685_10136907 3300005466 Bacteria 1537
23 Ga0070679_100035857 3300005530 Bacteria 4921
24 Ga0068853_100400073 3300005539 Bacteria 1285
25 Ga0070704_100088985 3300005549 Bacteria 2295
26 Ga0070704_100124771 3300005549 Bacteria 1984
27 Ga0068855_100002734 3300005563 Bacteria 21727
28 Ga0068855_100050590 3300005563 Bacteria 4896
29 Ga0070664_100126313 3300005564 Bacteria 2244
30 Ga0068856_100031183 3300005614 Bacteria 5215
31 Ga0068856_100052742 3300005614 Bacteria 4011
32 Ga0068856_100156478 3300005614 Unclassified 2289
33 Ga0068856_100158607 3300005614 Bacteria 2273
34 Ga0068856_100221582 3300005614 Unclassified 1907
35 Ga0068856_100350748 3300005614 Bacteria 1494
36 Ga0068852_100006838 3300005616 Bacteria 8284
37 Ga0068852_100418704 3300005616 Bacteria 1321
38 Ga0068859_100028025 3300005617 Bacteria 5648
39 Ga0068859_100434328 3300005617 Bacteria 1409
40 Ga0068858_100385668 3300005842 Bacteria 1345
41 Ga0070717_10038963 3300006028 Bacteria 3865
42 Ga0070712_100085268 3300006175 Bacteria 2299
43 Ga0075428_100003395 3300006844 Bacteria 17411
44 Ga0075428_100064754 3300006844 Bacteria 4004
45 Ga0075433_10010350 3300006852 Bacteria 7481
46 Ga0075434_100084978 3300006871 Bacteria 3163
47 Ga0075429_100020140 3300006880 Bacteria 5785
48 Ga0075436_100000743 3300006914 Bacteria 21632
49 Ga0097620_100028029 3300006931 Bacteria 5648
50 Ga0097620_100434339 3300006931 Bacteria 1409
51 Ga0075435_100176509 3300007076 Bacteria 1804
52 Ga0099794_10086393 3300007265 Bacteria 1553
53 Ga0105240_10000007 3300009093 Bacteria 619357
54 Ga0105240_10029900 3300009093 Bacteria 7089
55 Ga0105240_10041671 3300009093 Bacteria 5857
56 Ga0105240_10485355 3300009093 Bacteria 1377
57 Ga0111539_10155137 3300009094 Bacteria 2679
58 Ga0111539_10204871 3300009094 Bacteria 2299
59 Ga0111539_10254109 3300009094 Bacteria 2046
60 Ga0105245_10146485 3300009098 Bacteria 2228
61 Ga0114129_10341225 3300009147 Bacteria 1987
62 Ga0105241_10077629 3300009174 Bacteria 2593
63 Ga0105248_10137622 3300009177 Bacteria 2755
64 Ga0105237_10032250 3300009545 Bacteria 5304
65 Ga0105238_10004277 3300009551 Bacteria 14179
66 Ga0105238_10011472 3300009551 Bacteria 8925
67 Ga0105238_10628788 3300009551 Bacteria 1083
68 Ga0105239_10043286 3300010375 Bacteria 4935
69 Ga0157370_10014501 3300013104 Bacteria 8056
70 Ga0157370_10015746 3300013104 Bacteria 7676
71 Ga0157370_10027624 3300013104 Bacteria 5594
72 Ga0157370_10031571 3300013104 Bacteria 5179
73 Ga0157369_10023423 3300013105 Bacteria 6876
74 Ga0157369_10063492 3300013105 Bacteria 3978
75 Ga0157374_10570790 3300013296 Bacteria 1140
76 Ga0163162_10611541 3300013306 Bacteria 1215
77 Ga0157372_10110701 3300013307 Bacteria 3145
78 Ga0157372_10144116 3300013307 Bacteria 2747
79 Ga0157375_10135191 3300013308 Bacteria 2588
80 Ga0163163_10015138 3300014325 Bacteria 7120
81 Ga0182008_10007374 3300014497 Bacteria 6078
82 Ga0157379_10099679 3300014968 Bacteria 2608
83 Ga0182007_10021050 3300015262 Bacteria 2321
84 Ga0183362_10002 3300015683 Bacteria 1432711
85 Ga0213876_10045899 3300021384 Bacteria 2310
86 Ga0213875_10006213 3300021388 Bacteria 6296
87 Ga0213875_10007314 3300021388 Bacteria 5711
88 Ga0213875_10037157 3300021388 Bacteria 2295
89 Ga0209051_1042273 3300025303 Bacteria 1612
90 Ga0207699_10065969 3300025906 Bacteria 2196
91 Ga0207645_10163528 3300025907 Bacteria 1457
92 Ga0207705_10018538 3300025909 Bacteria 4976
93 Ga0207705_10018742 3300025909 Bacteria 4952
94 Ga0207707_10320175 3300025912 Bacteria 1339
95 Ga0207695_10000061 3300025913 Bacteria 359827
96 Ga0207695_10000753 3300025913 Bacteria 62265
97 Ga0207695_10023182 3300025913 Bacteria 7023
98 Ga0207671_10338209 3300025914 Bacteria 1192
99 Ga0207693_10033398 3300025915 Bacteria 4060
100 Ga0207663_10045026 3300025916 Bacteria 2712
101 Ga0207663_10137983 3300025916 Bacteria 1695
102 Ga0207657_10001780 3300025919 Bacteria 23257
103 Ga0207652_10056204 3300025921 Bacteria 3388
104 Ga0207681_10078641 3300025923 Bacteria 2322
105 Ga0207694_10009133 3300025924 Bacteria 7483
106 Ga0207694_10021697 3300025924 Bacteria 4866
107 Ga0207700_10023243 3300025928 Bacteria 4270
108 Ga0207664_10072904 3300025929 Bacteria 2770
109 Ga0207664_10228065 3300025929 Unclassified 1618
110 Ga0207691_10124773 3300025940 Bacteria 2279
111 Ga0207711_10287248 3300025941 Bacteria 1516
112 Ga0207679_10087121 3300025945 Bacteria 2404
113 Ga0207667_10004468 3300025949 Bacteria 17116
114 Ga0207651_10079149 3300025960 Bacteria 2360
115 Ga0207702_10108269 3300026078 Unclassified 2466
116 Ga0207702_10146492 3300026078 Bacteria 2143
117 Ga0265334_10001829 3300028573 Bacteria 10133
118 Ga0265338_10050417 3300028800 Bacteria 3763
119 Ga0265320_10030715 3300031240 Bacteria 2767
120 Ga0265325_10003551 3300031241 Bacteria 10128
121 Ga0265325_10082229 3300031241 Bacteria 1599
122 Ga0316576_10082234 3300031727 Bacteria 2390
123 Ga0307409_100156189 3300031995 Bacteria 1988
124 Ga0316593_10022371 3300032168 Bacteria 1985
125 Ga0307510_10000705 3300033180 Bacteria 34297
126 Ga0373931_0005429 3300035691 Bacteria 5892
127 Ga0373927_0003828 3300035695 Bacteria 10682
128 Ga0373927_0079607 3300035695 Bacteria 2123
129 Ga0373947_0049573 3300035725 Bacteria 2522
130 Ga0316584_0000023 3300036712 Bacteria 51606
131 Ga0373925_0139956 3300037068 Bacteria 1893
132 Ga0395900_0379403 3300037418 Bacteria 1382
133 Ga0436364_0246555 3300037853 Bacteria 46116
134 Ga0436364_0375039 3300037853 Bacteria 2644
135 Ga0436364_0468251 3300037853 Bacteria 3531
136 Ga0395901_0119519 3300038443 Bacteria 2769
137 Ga0436365_0230105 3300039437 Bacteria 3913
138 Ga0436360_0546743 3300039438 Bacteria 1992
139 Ga0451853_3633174 3300041512 Bacteria 2331
140 Ga0466969_0000001 3300044656 Bacteria 189617
141 Ga0466969_0008783 3300044656 Bacteria 5356
142 Ga0466966_0012920 3300044684 Bacteria 5529
143 Ga0466966_0016541 3300044684 Bacteria 4871
144 Ga0466959_0008263 3300045049 Bacteria 7350
145 Ga0495630_0152615 3300046517 Bacteria 1758
146 Ga0496109_0303684 3300048912 Bacteria 1505
147 Ga0496109_0557692 3300048912 Bacteria 1081
148 Ga0501031_0002582 3300049568 Bacteria 11548
149 Ga0501031_0109391 3300049568 Bacteria 1804
150 Ga0501032_0005820 3300049569 Bacteria 9119
151 Ga0501032_0172128 3300049569 Bacteria 1419
152 Ga0501033_0012359 3300049570 Bacteria 6515
153 Ga0501033_0038064 3300049570 Bacteria 3598
154 Ga0501033_0190242 3300049570 Bacteria 1469
155 Ga0501034_0008671 3300049571 Bacteria 10717
156 Ga0501036_0117260 3300049572 Bacteria 2248
157 Ga0501037_0002226 3300049573 Bacteria 14015
158 Ga0501037_0127320 3300049573 Bacteria 1827
159 Ga0501038_0005749 3300049574 Bacteria 11489
160 Ga0501039_0000640 3300049575 Bacteria 25346
161 Ga0501040_0199610 3300049576 Bacteria 1420
162 Ga0501040_0224773 3300049576 Bacteria 1336
163 Ga0501043_0001594 3300049579 Bacteria 19723
164 Ga0501046_0000757 3300049580 Bacteria 31241
165 Ga0501046_0006733 3300049580 Bacteria 10151
166 Ga0501047_0029730 3300049581 Bacteria 5266
167 Ga0501048_0038312 3300049582 Bacteria 3440
168 Ga0501067_0008597 3300049583 Bacteria 5660
169 Ga0501067_0065133 3300049583 Bacteria 2017
170 Ga0501068_0017910 3300049584 Bacteria 4100
171 Ga0501069_0000342 3300049585 Bacteria 21131
172 Ga0501070_0008610 3300049586 Bacteria 8626
173 Ga0501070_0025212 3300049586 Bacteria 4986
174 Ga0501072_0004870 3300049588 Bacteria 10215
175 Ga0501073_0000570 3300049589 Bacteria 26026
176 Ga0501074_0011661 3300049590 Bacteria 6388
177 Ga0501075_0125241 3300049591 Bacteria 1956
178 Ga0501077_0070200 3300049593 Unclassified 2220
179 Ga0501079_0008139 3300049741 Bacteria 7945
180 Ga0501080_0000049 3300049742 Bacteria 76472
181 Ga0501083_0042441 3300049744 Bacteria 3083
182 Ga0501083_0133173 3300049744 Bacteria 1629
183 Ga0501035_0009320 3300049822 Bacteria 9123
184 Ga0501044_0021950 3300049823 Bacteria 6806
185 nmdc:mga09592_259527_c1 3300050508 Bacteria 1507
186 nmdc:mga06r32_30635_c1 3300050510 Bacteria 5049
187 nmdc:mga08y16_135594_c1 3300050511 Bacteria 2558
188 nmdc:mga0rr50_383266_c1 3300050513 Unclassified 1186
189 nmdc:mga08x19_1968_c1 3300050514 Bacteria 12567
190 nmdc:mga08x19_7905_c1 3300050514 Bacteria 6318
191 nmdc:mga0a205_462419_c1 3300050515 Bacteria 1128
192 Ga0495595_0122212 3300053084 Bacteria 1269
193 Ga0500645_006774 3300053730 Bacteria 4057
194 Ga0501084_0001995 3300054114 Bacteria 16298
195 Ga0501082_0010277 3300060353 Bacteria 8057
196 Ga0501082_0053658 3300060353 Bacteria 3474
197 2545673052 2545555834 Bacteria 8130841
198 2861693001 2861691609 Bacteria 5628931
199 2902331475 2902330777 Bacteria 6395352
200 641336549 641228493 Bacteria 3999591
201 641645924 641522639 Bacteria 7737025
202 643390357 643348555 Bacteria 3914947
203 643604441 643348564 Bacteria 8839022
204 Ga0105240_10159683
205 MRS1b_contig_4244159
206 rootH1_10093661
207 rootH2_10000135
208 Ga0055540_1030770
209 Ga0065712_10071469
210 Ga0070658_10004162
211 Ga0070658_10039322
212 Ga0070680_100036159
213 Ga0070660_100009214
214 Ga0070661_100016978
215 Ga0070673_100095962
216 Ga0070688_100243151
217 Ga0070709_10038016
218 Ga0070714_100117552
219 Ga0070713_100013550
220 Ga0070713_100041968
221 Ga0070711_100056998
222 Ga0070708_100113328
223 Ga0070663_100432753
224 Ga0070662_100184384
225 Ga0070685_10136907
226 Ga0070679_100035857
227 Ga0068853_100400073
228 Ga0070704_100088985
229 Ga0070704_100124771
230 Ga0068855_100002734
231 Ga0068855_100050590
232 Ga0070664_100126313
233 Ga0068856_100031183
234 Ga0068856_100052742
235 Ga0068856_100156478
236 Ga0068856_100158607
237 Ga0068856_100221582
238 Ga0068856_100350748
239 Ga0068852_100006838
240 Ga0068852_100418704
241 Ga0068859_100028025
242 Ga0068859_100434328
243 Ga0068858_100385668
244 Ga0070717_10038963
245 Ga0070712_100085268
246 Ga0075428_100003395
247 Ga0075428_100064754
248 Ga0075433_10010350
249 Ga0075434_100084978
250 Ga0075429_100020140
251 Ga0075436_100000743
252 Ga0097620_100028029
253 Ga0097620_100434339
254 Ga0075435_100176509
255 Ga0099794_10086393
256 Ga0105240_10000007
257 Ga0105240_10029900
258 Ga0105240_10041671
259 Ga0105240_10485355
260 Ga0111539_10155137
261 Ga0111539_10204871
262 Ga0111539_10254109
263 Ga0105245_10146485
264 Ga0114129_10341225
265 Ga0105241_10077629
266 Ga0105248_10137622
267 Ga0105237_10032250
268 Ga0105238_10004277
269 Ga0105238_10011472
270 Ga0105238_10628788
271 Ga0105239_10043286
272 Ga0157370_10014501
273 Ga0157370_10015746
274 Ga0157370_10027624
275 Ga0157370_10031571
276 Ga0157369_10023423
277 Ga0157369_10063492
278 Ga0157374_10570790
279 Ga0163162_10611541
280 Ga0157372_10110701
281 Ga0157372_10144116
282 Ga0157375_10135191
283 Ga0163163_10015138
284 Ga0182008_10007374
285 Ga0157379_10099679
286 Ga0182007_10021050
287 Ga0183362_10002
288 Ga0213876_10045899
289 Ga0213875_10006213
290 Ga0213875_10007314
291 Ga0213875_10037157
292 Ga0209051_1042273
293 Ga0207699_10065969
294 Ga0207645_10163528
295 Ga0207705_10018538
296 Ga0207705_10018742
297 Ga0207707_10320175
298 Ga0207695_10000061
299 Ga0207695_10000753
300 Ga0207695_10023182
301 Ga0207671_10338209
302 Ga0207693_10033398
303 Ga0207663_10045026
304 Ga0207663_10137983
305 Ga0207657_10001780
306 Ga0207652_10056204
307 Ga0207681_10078641
308 Ga0207694_10009133
309 Ga0207694_10021697
310 Ga0207700_10023243
311 Ga0207664_10072904
312 Ga0207664_10228065
313 Ga0207691_10124773
314 Ga0207711_10287248
315 Ga0207679_10087121
316 Ga0207667_10004468
317 Ga0207651_10079149
318 Ga0207702_10108269
319 Ga0207702_10146492
320 Ga0265334_10001829
321 Ga0265338_10050417
322 Ga0265320_10030715
323 Ga0265325_10003551
324 Ga0265325_10082229
325 Ga0316576_10082234
326 Ga0307409_100156189
327 Ga0316593_10022371
328 Ga0307510_10000705
329 Ga0373931_0005429
330 Ga0373927_0003828
331 Ga0373927_0079607
332 Ga0373947_0049573
333 Ga0316584_0000023
334 Ga0373925_0139956
335 Ga0395900_0379403
336 Ga0436364_0246555
337 Ga0436364_0375039
338 Ga0436364_0468251
339 Ga0395901_0119519
340 Ga0436365_0230105
341 Ga0436360_0546743
342 Ga0451853_3633174
343 Ga0466969_0000001
344 Ga0466969_0008783
345 Ga0466966_0012920
346 Ga0466966_0016541
347 Ga0466959_0008263
348 Ga0495630_0152615
349 Ga0496109_0303684
350 Ga0496109_0557692
351 Ga0501031_0002582
352 Ga0501031_0109391
353 Ga0501032_0005820
354 Ga0501032_0172128
355 Ga0501033_0012359
356 Ga0501033_0038064
357 Ga0501033_0190242
358 Ga0501034_0008671
359 Ga0501036_0117260
360 Ga0501037_0002226
361 Ga0501037_0127320
362 Ga0501038_0005749
363 Ga0501039_0000640
364 Ga0501040_0199610
365 Ga0501040_0224773
366 Ga0501043_0001594
367 Ga0501046_0000757
368 Ga0501046_0006733
369 Ga0501047_0029730
370 Ga0501048_0038312
371 Ga0501067_0008597
372 Ga0501067_0065133
373 Ga0501068_0017910
374 Ga0501069_0000342
375 Ga0501070_0008610
376 Ga0501070_0025212
377 Ga0501072_0004870
378 Ga0501073_0000570
379 Ga0501074_0011661
380 Ga0501075_0125241
381 Ga0501077_0070200
382 Ga0501079_0008139
383 Ga0501080_0000049
384 Ga0501083_0042441
385 Ga0501083_0133173
386 Ga0501035_0009320
387 Ga0501044_0021950
388 nmdc:mga09592_259527_c1
389 nmdc:mga06r32_30635_c1
390 nmdc:mga08y16_135594_c1
391 nmdc:mga0rr50_383266_c1
392 nmdc:mga08x19_1968_c1
393 nmdc:mga08x19_7905_c1
394 nmdc:mga0a205_462419_c1
395 Ga0495595_0122212
396 Ga0500645_006774
397 Ga0501084_0001995
398 Ga0501082_0010277
399 Ga0501082_0053658
400 2545673052
401 2861693001
402 2902331475
403 641336549
404 641645924
405 643390357
406 643604441

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00116

COX2

Cytochrome C oxidase subunit II, periplasmic domain

118

196

0.95

PF02790

COX2_TM

Cytochrome C oxidase subunit II, transmembrane domain

2

87

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
1w2l-assembly1.cif.gz_A cytochrome c domain of caa3 oxygen oxidoreductase 0.9324 212 307
1cyw-assembly1.cif.gz_A quinol oxidase (periplasmic fragment of subunit ii) (cyoa) 0.9317 99 207
4w9z-assembly1.cif.gz_A crystal structure of the periplasmic domain of subunit ii of cytochrome oxidase (coxb) of bradyrhizobium japonicum 0.926 94 207
1w2l-assembly1.cif.gz_A cytochrome c domain of caa3 oxygen oxidoreductase 0.9142 212 307
6y71-assembly1.cif.gz_A pseudomonas stutzeri nitrous oxide reductase mutant, h130a 0.9071 124 198
ID Description Score Start End Superfamily
af_Q2FZJ9_108_266_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9751 99 207 2.60.40.420
af_A0A1D6ED90_406_498_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9659 124 205 2.60.40.420
af_P0ABJ1_113_282_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9621 99 207 2.60.40.420
5wehH02 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9476 100 209 2.60.40.420
af_Q8I6V2_60_165_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.94 121 204 2.60.40.420
ID Description Score Start End GO Terms
AF-A0A2V9VMT5-F1-model_v4 Cytochrome oxidase subunit II copper A binding domain-containing protein 0.9819 123 207 GO:0004129
GO:0005507
GO:0016020
GO:0042773
AF-A0A2V5UWG5-F1-model_v4 Cytochrome oxidase subunit II copper A binding domain-containing protein 0.9815 123 207 GO:0004129
GO:0005507
GO:0016020
GO:0042773
AF-K2DQG4-F1-model_v4 Cytochrome oxidase subunit II copper A binding domain-containing protein 0.973 123 207 GO:0004129
GO:0005507
GO:0009486
GO:0016020
GO:0042773
AF-A0A2V9GIB0-F1-model_v4 Cytochrome oxidase subunit II copper A binding domain-containing protein 0.9725 125 207 GO:0004129
GO:0005507
GO:0016020
GO:0042773
AF-A0A435FGA7-F1-model_v4 Cytochrome c oxidase subunit II 0.9709 127 206 GO:0004129
GO:0005507
GO:0016020
GO:0042773

Map