F310400

General Info

Members Datasets Scaffolds Average Seq Length
202 102 404 248

Family's Representative Sequence

Representative Sequence 3300049568|Ga0501031_0032622|Ga0501031_0032622_145_972
Length 261
Sequence MDGRMALADSGGKRFPHCVNPSRRDKLAAMFDSTPRADGRAANQLRPVRFQNHIAPHAAGSTLIEWGNTRVICGVTIEETVPRWMKEQKVEGGWITAEYSMLPYSTLTRKPRDITKGRLDGRSSEIQRLIGRSIRAAIDLEKVGARTLCVDCDVLQADGGTRTAAITGAFVALSLAILSAVSAVSVGVVNGRALLDLCYTEDVAAAVDMNLVMNARGEFIELQGTGEESTFSDAQLVEMLALGKHGIRELLAAQQSAIAQG

Samples

Sample ID Description Type Environment
1 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
21 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
22 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
23 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
26 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
39 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
40 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
41 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
42 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
43 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
46 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
47 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
48 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
49 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
50 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
51 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
52 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
53 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
56 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
59 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
60 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
61 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
64 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
65 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
66 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
67 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
68 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
69 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
70 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
71 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
72 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
75 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
76 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
77 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
78 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
79 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
80 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
81 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
82 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
83 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
84 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
85 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
86 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
87 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
88 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.99
Rhizosphere 99.01
Stem 0
Stem Tuber 0
Unclassified 2.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501031_0032622 3300049568 Bacteria 3396
2 Ga0065707_10294703 3300005295 Bacteria 1017
3 Ga0070666_10008912 3300005335 Bacteria 6241
4 Ga0070689_100014305 3300005340 Bacteria 5761
5 Ga0070689_100044772 3300005340 Bacteria 3405
6 Ga0070689_100055275 3300005340 Unclassified 3076
7 Ga0070689_100094065 3300005340 Bacteria 2366
8 Ga0070691_10207216 3300005341 Bacteria 1033
9 Ga0070688_100011645 3300005365 Bacteria 4895
10 Ga0070688_100642942 3300005365 Bacteria 816
11 Ga0070714_100046952 3300005435 Bacteria 3666
12 Ga0070711_100056771 3300005439 Bacteria 2709
13 Ga0070681_10075982 3300005458 Bacteria 3318
14 Ga0070681_10100032 3300005458 Bacteria 2845
15 Ga0070685_10044062 3300005466 Unclassified 2553
16 Ga0070686_100166380 3300005544 Bacteria 1556
17 Ga0068855_100021950 3300005563 Bacteria 7653
18 Ga0068855_100238096 3300005563 Unclassified 2035
19 Ga0068855_100285552 3300005563 Bacteria 1831
20 Ga0068857_100047819 3300005577 Bacteria 3799
21 Ga0068856_100000079 3300005614 Bacteria 92486
22 Ga0068856_100020911 3300005614 Bacteria 6360
23 Ga0068856_100157083 3300005614 Bacteria 2285
24 Ga0068863_100329847 3300005841 Bacteria 1483
25 Ga0097621_100099032 3300006237 Unclassified 2450
26 Ga0075431_100271303 3300006847 Bacteria 1719
27 Ga0075429_100187246 3300006880 Bacteria 1814
28 Ga0075429_100214502 3300006880 Bacteria 1686
29 Ga0105240_10015363 3300009093 Bacteria 10412
30 Ga0105240_10200168 3300009093 Bacteria 2341
31 Ga0105240_10534430 3300009093 Bacteria 1299
32 Ga0105240_11022229 3300009093 Bacteria 883
33 Ga0105248_10659094 3300009177 Bacteria 1181
34 Ga0105238_10003252 3300009551 Bacteria 16217
35 Ga0105238_10038852 3300009551 Bacteria 4833
36 Ga0105238_10533130 3300009551 Bacteria 1177
37 Ga0105238_10567724 3300009551 Bacteria 1140
38 Ga0157370_10090655 3300013104 Bacteria 2870
39 Ga0157370_10305449 3300013104 Bacteria 1468
40 Ga0157375_10000094 3300013308 Bacteria 88991
41 Ga0163163_11126977 3300014325 Unclassified 847
42 Ga0157376_10067361 3300014969 Bacteria 3028
43 Ga0207707_10228790 3300025912 Bacteria 1618
44 Ga0207695_10024641 3300025913 Bacteria 6759
45 Ga0207695_10286319 3300025913 Bacteria 1541
46 Ga0207652_10246206 3300025921 Bacteria 1612
47 Ga0207694_10006264 3300025924 Bacteria 9087
48 Ga0207694_10011188 3300025924 Bacteria 6773
49 Ga0207694_10259043 3300025924 Bacteria 1424
50 Ga0207694_10381595 3300025924 Bacteria 1170
51 Ga0207664_10039348 3300025929 Bacteria 3672
52 Ga0207670_10044271 3300025936 Unclassified 2944
53 Ga0207670_10162318 3300025936 Bacteria 1669
54 Ga0207670_10186399 3300025936 Bacteria 1567
55 Ga0207661_10547756 3300025944 Bacteria 1060
56 Ga0207667_10076715 3300025949 Bacteria 3468
57 Ga0207667_10128296 3300025949 Bacteria 2612
58 Ga0207677_10184618 3300026023 Bacteria 1644
59 Ga0207702_10000669 3300026078 Bacteria 37291
60 Ga0207702_10128380 3300026078 Bacteria 2279
61 Ga0207641_10143584 3300026088 Bacteria 2156
62 Ga0207641_10409873 3300026088 Bacteria 1303
63 Ga0207674_10010591 3300026116 Bacteria 10432
64 Ga0207674_10212301 3300026116 Bacteria 1884
65 Ga0207674_10289028 3300026116 Bacteria 1588
66 Ga0265337_1000019 3300028556 Bacteria 74250
67 Ga0265337_1000483 3300028556 Bacteria 21081
68 Ga0265337_1001311 3300028556 Bacteria 12405
69 Ga0265337_1002078 3300028556 Bacteria 9464
70 Ga0265337_1012645 3300028556 Bacteria 2861
71 Ga0265337_1017532 3300028556 Bacteria 2295
72 Ga0265337_1020176 3300028556 Bacteria 2090
73 Ga0265326_10002600 3300028558 Bacteria 6057
74 Ga0265326_10025100 3300028558 Bacteria 1700
75 Ga0265326_10031835 3300028558 Bacteria 1503
76 Ga0265326_10081928 3300028558 Bacteria 912
77 Ga0265319_1009514 3300028563 Bacteria 4133
78 Ga0265319_1030309 3300028563 Bacteria 1892
79 Ga0265319_1048191 3300028563 Bacteria 1415
80 Ga0265334_10052620 3300028573 Bacteria 1557
81 Ga0265334_10098644 3300028573 Bacteria 1059
82 Ga0265322_10048564 3300028654 Bacteria 1206
83 Ga0265336_10001779 3300028666 Bacteria 9429
84 Ga0265336_10016375 3300028666 Bacteria 2424
85 Ga0265338_10000016 3300028800 Bacteria 347424
86 Ga0265338_10000036 3300028800 Bacteria 238689
87 Ga0265338_10000145 3300028800 Bacteria 130629
88 Ga0265338_10000276 3300028800 Bacteria 93585
89 Ga0265338_10001186 3300028800 Bacteria 43013
90 Ga0265338_10001237 3300028800 Bacteria 42094
91 Ga0265338_10001578 3300028800 Bacteria 36726
92 Ga0265338_10002778 3300028800 Bacteria 25610
93 Ga0265338_10008892 3300028800 Bacteria 12095
94 Ga0265338_10009538 3300028800 Bacteria 11551
95 Ga0265338_10017480 3300028800 Bacteria 7728
96 Ga0265338_10049625 3300028800 Bacteria 3802
97 Ga0265338_10051638 3300028800 Bacteria 3699
98 Ga0265338_10086573 3300028800 Bacteria 2607
99 Ga0265338_10223500 3300028800 Bacteria 1405
100 Ga0265338_10224898 3300028800 Bacteria 1399
101 Ga0265338_10278644 3300028800 Bacteria 1222
102 Ga0265338_10300958 3300028800 Bacteria 1166
103 Ga0265324_10015972 3300029957 Bacteria 2753
104 Ga0265324_10016749 3300029957 Bacteria 2669
105 Ga0265324_10017744 3300029957 Bacteria 2586
106 Ga0265324_10038027 3300029957 Bacteria 1671
107 Ga0265324_10077730 3300029957 Bacteria 1129
108 Ga0265332_10004450 3300031238 Bacteria 6574
109 Ga0265328_10018502 3300031239 Bacteria 2685
110 Ga0265320_10000204 3300031240 Bacteria 48100
111 Ga0265320_10000536 3300031240 Bacteria 29339
112 Ga0265320_10003039 3300031240 Bacteria 11388
113 Ga0265320_10164881 3300031240 Bacteria 997
114 Ga0265320_10171522 3300031240 Bacteria 974
115 Ga0265329_10006863 3300031242 Bacteria 4465
116 Ga0265340_10036829 3300031247 Bacteria 2424
117 Ga0265340_10082996 3300031247 Bacteria 1506
118 Ga0265339_10002715 3300031249 Bacteria 12580
119 Ga0265331_10004868 3300031250 Bacteria 8267
120 Ga0265327_10002194 3300031251 Bacteria 21435
121 Ga0265327_10002539 3300031251 Bacteria 19022
122 Ga0265327_10014735 3300031251 Bacteria 5093
123 Ga0265316_10013762 3300031344 Bacteria 7167
124 Ga0265316_10021360 3300031344 Bacteria 5483
125 Ga0265316_10032642 3300031344 Bacteria 4247
126 Ga0265316_10226750 3300031344 Bacteria 1377
127 Ga0265316_10313265 3300031344 Bacteria 1141
128 Ga0265316_10345247 3300031344 Bacteria 1078
129 Ga0265313_10000197 3300031595 Bacteria 64794
130 Ga0265313_10004745 3300031595 Bacteria 10246
131 Ga0265314_10000234 3300031711 Bacteria 82654
132 Ga0265314_10006168 3300031711 Bacteria 10646
133 Ga0265314_10014900 3300031711 Bacteria 6193
134 Ga0265314_10151618 3300031711 Bacteria 1421
135 Ga0265342_10205201 3300031712 Bacteria 1069
136 Ga0373954_0077319 3300035118 Bacteria 1587
137 Ga0373956_0015537 3300035119 Bacteria 3189
138 Ga0373956_0157776 3300035119 Bacteria 1069
139 Ga0373927_0060471 3300035695 Bacteria 2451
140 Ga0373927_0374419 3300035695 Bacteria 939
141 Ga0373933_0204629 3300035724 Bacteria 1264
142 Ga0373937_0009353 3300036401 Bacteria 8514
143 Ga0373937_0093666 3300036401 Bacteria 2785
144 Ga0373925_0008995 3300037068 Bacteria 7277
145 Ga0439446_0100038 3300042156 Bacteria 916
146 Ga0451577_0035737 3300042876 Bacteria 4475
147 Ga0453684_0001072 3300044712 Bacteria 87117
148 Ga0453684_0098685 3300044712 Bacteria 3580
149 Ga0451576_0070910 3300045051 Bacteria 3627
150 Ga0451576_0295990 3300045051 Bacteria 1692
151 Ga0451576_0337370 3300045051 Bacteria 1578
152 Ga0495592_0001822 3300046454 Bacteria 14972
153 Ga0495592_0306869 3300046454 Bacteria 1030
154 Ga0495662_0061773 3300046476 Bacteria 1810
155 Ga0495664_0084713 3300046477 Bacteria 1903
156 Ga0495618_0004105 3300046514 Bacteria 8988
157 Ga0495618_0054812 3300046514 Bacteria 2524
158 Ga0495628_0000259 3300046516 Bacteria 47040
159 Ga0495630_0040188 3300046517 Bacteria 3495
160 Ga0495666_0008488 3300046526 Bacteria 5152
161 Ga0495652_0206220 3300046529 Bacteria 1488
162 Ga0495652_0378811 3300046529 Bacteria 1007
163 Ga0495640_0143318 3300046533 Bacteria 1539
164 Ga0495640_0273668 3300046533 Bacteria 1053
165 Ga0495586_0006055 3300046535 Bacteria 6467
166 Ga0495586_0006909 3300046535 Bacteria 6047
167 Ga0495667_0039905 3300046559 Bacteria 3119
168 Ga0495634_0057942 3300046642 Bacteria 2584
169 Ga0495634_0076128 3300046642 Bacteria 2203
170 Ga0495634_0120427 3300046642 Bacteria 1681
171 Ga0495635_0125282 3300046663 Bacteria 1752
172 Ga0495647_0040935 3300046681 Bacteria 1763
173 Ga0495658_0023186 3300046683 Bacteria 3293
174 Ga0495613_0005951 3300046689 Bacteria 9124
175 Ga0495674_0224167 3300047319 Bacteria 1553
176 Ga0495674_0384948 3300047319 Bacteria 1134
177 Ga0495680_0068808 3300047322 Bacteria 2703
178 Ga0495675_0019588 3300047444 Bacteria 4299
179 Ga0495684_0187851 3300047471 Bacteria 1529
180 Ga0495684_0301054 3300047471 Bacteria 1152
181 Ga0496106_0166092 3300048909 Bacteria 1747
182 Ga0496115_0004477 3300048918 Bacteria 10112
183 Ga0501031_0003391 3300049568 Bacteria 10227
184 Ga0501032_0006875 3300049569 Bacteria 8338
185 Ga0501032_0042059 3300049569 Bacteria 3101
186 Ga0501033_0003591 3300049570 Bacteria 12678
187 Ga0501033_0023130 3300049570 Bacteria 4686
188 Ga0501033_0155599 3300049570 Bacteria 1647
189 Ga0501034_0290243 3300049571 Bacteria 1574
190 Ga0501034_0308455 3300049571 Bacteria 1518
191 Ga0501037_0089762 3300049573 Bacteria 2224
192 Ga0501038_0000559 3300049574 Bacteria 32919
193 Ga0501046_0230289 3300049580 Bacteria 1369
194 Ga0501047_0172915 3300049581 Bacteria 2029
195 Ga0501035_0004373 3300049822 Bacteria 13422
196 Ga0501035_0134946 3300049822 Bacteria 2149
197 Ga0501044_0000611 3300049823 Bacteria 43362
198 Ga0501044_0019349 3300049823 Bacteria 7286
199 nmdc:mga05p37_210694_c1 3300050507 Bacteria 2349
200 nmdc:mga09592_219198_c1 3300050508 Bacteria 1649
201 nmdc:mga08y16_279429_c1 3300050511 Bacteria 1722
202 Ga0501084_0524908 3300054114 Bacteria 1001
203 Ga0501031_0032622
204 Ga0065707_10294703
205 Ga0070666_10008912
206 Ga0070689_100014305
207 Ga0070689_100044772
208 Ga0070689_100055275
209 Ga0070689_100094065
210 Ga0070691_10207216
211 Ga0070688_100011645
212 Ga0070688_100642942
213 Ga0070714_100046952
214 Ga0070711_100056771
215 Ga0070681_10075982
216 Ga0070681_10100032
217 Ga0070685_10044062
218 Ga0070686_100166380
219 Ga0068855_100021950
220 Ga0068855_100238096
221 Ga0068855_100285552
222 Ga0068857_100047819
223 Ga0068856_100000079
224 Ga0068856_100020911
225 Ga0068856_100157083
226 Ga0068863_100329847
227 Ga0097621_100099032
228 Ga0075431_100271303
229 Ga0075429_100187246
230 Ga0075429_100214502
231 Ga0105240_10015363
232 Ga0105240_10200168
233 Ga0105240_10534430
234 Ga0105240_11022229
235 Ga0105248_10659094
236 Ga0105238_10003252
237 Ga0105238_10038852
238 Ga0105238_10533130
239 Ga0105238_10567724
240 Ga0157370_10090655
241 Ga0157370_10305449
242 Ga0157375_10000094
243 Ga0163163_11126977
244 Ga0157376_10067361
245 Ga0207707_10228790
246 Ga0207695_10024641
247 Ga0207695_10286319
248 Ga0207652_10246206
249 Ga0207694_10006264
250 Ga0207694_10011188
251 Ga0207694_10259043
252 Ga0207694_10381595
253 Ga0207664_10039348
254 Ga0207670_10044271
255 Ga0207670_10162318
256 Ga0207670_10186399
257 Ga0207661_10547756
258 Ga0207667_10076715
259 Ga0207667_10128296
260 Ga0207677_10184618
261 Ga0207702_10000669
262 Ga0207702_10128380
263 Ga0207641_10143584
264 Ga0207641_10409873
265 Ga0207674_10010591
266 Ga0207674_10212301
267 Ga0207674_10289028
268 Ga0265337_1000019
269 Ga0265337_1000483
270 Ga0265337_1001311
271 Ga0265337_1002078
272 Ga0265337_1012645
273 Ga0265337_1017532
274 Ga0265337_1020176
275 Ga0265326_10002600
276 Ga0265326_10025100
277 Ga0265326_10031835
278 Ga0265326_10081928
279 Ga0265319_1009514
280 Ga0265319_1030309
281 Ga0265319_1048191
282 Ga0265334_10052620
283 Ga0265334_10098644
284 Ga0265322_10048564
285 Ga0265336_10001779
286 Ga0265336_10016375
287 Ga0265338_10000016
288 Ga0265338_10000036
289 Ga0265338_10000145
290 Ga0265338_10000276
291 Ga0265338_10001186
292 Ga0265338_10001237
293 Ga0265338_10001578
294 Ga0265338_10002778
295 Ga0265338_10008892
296 Ga0265338_10009538
297 Ga0265338_10017480
298 Ga0265338_10049625
299 Ga0265338_10051638
300 Ga0265338_10086573
301 Ga0265338_10223500
302 Ga0265338_10224898
303 Ga0265338_10278644
304 Ga0265338_10300958
305 Ga0265324_10015972
306 Ga0265324_10016749
307 Ga0265324_10017744
308 Ga0265324_10038027
309 Ga0265324_10077730
310 Ga0265332_10004450
311 Ga0265328_10018502
312 Ga0265320_10000204
313 Ga0265320_10000536
314 Ga0265320_10003039
315 Ga0265320_10164881
316 Ga0265320_10171522
317 Ga0265329_10006863
318 Ga0265340_10036829
319 Ga0265340_10082996
320 Ga0265339_10002715
321 Ga0265331_10004868
322 Ga0265327_10002194
323 Ga0265327_10002539
324 Ga0265327_10014735
325 Ga0265316_10013762
326 Ga0265316_10021360
327 Ga0265316_10032642
328 Ga0265316_10226750
329 Ga0265316_10313265
330 Ga0265316_10345247
331 Ga0265313_10000197
332 Ga0265313_10004745
333 Ga0265314_10000234
334 Ga0265314_10006168
335 Ga0265314_10014900
336 Ga0265314_10151618
337 Ga0265342_10205201
338 Ga0373954_0077319
339 Ga0373956_0015537
340 Ga0373956_0157776
341 Ga0373927_0060471
342 Ga0373927_0374419
343 Ga0373933_0204629
344 Ga0373937_0009353
345 Ga0373937_0093666
346 Ga0373925_0008995
347 Ga0439446_0100038
348 Ga0451577_0035737
349 Ga0453684_0001072
350 Ga0453684_0098685
351 Ga0451576_0070910
352 Ga0451576_0295990
353 Ga0451576_0337370
354 Ga0495592_0001822
355 Ga0495592_0306869
356 Ga0495662_0061773
357 Ga0495664_0084713
358 Ga0495618_0004105
359 Ga0495618_0054812
360 Ga0495628_0000259
361 Ga0495630_0040188
362 Ga0495666_0008488
363 Ga0495652_0206220
364 Ga0495652_0378811
365 Ga0495640_0143318
366 Ga0495640_0273668
367 Ga0495586_0006055
368 Ga0495586_0006909
369 Ga0495667_0039905
370 Ga0495634_0057942
371 Ga0495634_0076128
372 Ga0495634_0120427
373 Ga0495635_0125282
374 Ga0495647_0040935
375 Ga0495658_0023186
376 Ga0495613_0005951
377 Ga0495674_0224167
378 Ga0495674_0384948
379 Ga0495680_0068808
380 Ga0495675_0019588
381 Ga0495684_0187851
382 Ga0495684_0301054
383 Ga0496106_0166092
384 Ga0496115_0004477
385 Ga0501031_0003391
386 Ga0501032_0006875
387 Ga0501032_0042059
388 Ga0501033_0003591
389 Ga0501033_0023130
390 Ga0501033_0155599
391 Ga0501034_0290243
392 Ga0501034_0308455
393 Ga0501037_0089762
394 Ga0501038_0000559
395 Ga0501046_0230289
396 Ga0501047_0172915
397 Ga0501035_0004373
398 Ga0501035_0134946
399 Ga0501044_0000611
400 Ga0501044_0019349
401 nmdc:mga05p37_210694_c1
402 nmdc:mga09592_219198_c1
403 nmdc:mga08y16_279429_c1
404 Ga0501084_0524908

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03725

RNase_PH_C

3' exoribonuclease family, domain 2

179

246

0.97

PF01138

RNase_PH

3' exoribonuclease family, domain 1

44

179

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
1oys-assembly1.cif.gz_A-2 crystal structure of the phosphorolytic exoribonuclease rnase ph from bacillus subtilis 0.7415 1 203
1oyp-assembly1.cif.gz_A crystal structure of the phosphorolytic exoribonuclease rnase ph from bacillus subtilis 0.7371 1 206
3b4t-assembly1.cif.gz_F crystal structure of mycobacterium tuberculosis rnase ph, the mycobacterium tuberculosis structural genomics consortium target rv1340 0.7281 2 200
3hkm-assembly3.cif.gz_C crystal structure of rice(oryza sativa) rrp46 0.7276 2 203
1oyr-assembly1.cif.gz_C crystal structure of the phosphorolytic exoribonuclease rnase ph from bacillus subtilis 0.722 1 206
ID Description Score Start End Superfamily
1oysA01 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;GHMP Kinase, N-terminal domain 0.7515 13 203 3.30.230.70
3dd6A01 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;GHMP Kinase, N-terminal domain 0.7163 13 212 3.30.230.70
af_Q8K370_265_366_3.30.200.20 Alpha Beta;2-Layer Sandwich;Phosphorylase Kinase; domain 1;Phosphorylase Kinase; domain 1 0.7107 13 41 3.30.200.20
2wp8B00 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;GHMP Kinase, N-terminal domain 0.6939 1 206 3.30.230.70
6h25D00 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;GHMP Kinase, N-terminal domain 0.686 11 206 3.30.230.70
ID Description Score Start End GO Terms
AF-X1QQI0-F1-model_v4 Exoribonuclease phosphorolytic domain-containing protein 0.885 12 156 GO:0000049
GO:0006364
GO:0008033
GO:0009022
GO:0016075
AF-X1QQI0-F1-model_v4 Exoribonuclease phosphorolytic domain-containing protein 0.879 12 156 GO:0000049
GO:0006364
GO:0008033
GO:0009022
GO:0016075
AF-A0A7M3Y5F9-F1-model_v4 Ribonuclease PH 0.8734 5 152 GO:0000049
GO:0006364
GO:0008033
GO:0009022
GO:0016075
AF-A0A1Q7CG64-F1-model_v4 Ribonuclease PH 0.8717 15 149 GO:0000049
GO:0006364
GO:0008033
GO:0009022
GO:0016075
AF-A0A536GMU4-F1-model_v4 Ribonuclease PH 0.8676 2 157 GO:0000049
GO:0008033
GO:0009022
GO:0016075

Map