F310242

General Info

Members Datasets Scaffolds Average Seq Length
202 156 404 214

Family's Representative Sequence

Representative Sequence 3300044842|Ga0466957_0134971|Ga0466957_0134971_508_1218
Length 236
Sequence VTGGTSEDDGVLRVLLADDQVLIRSGFAALIGSADDLQVVGEAGDGDQAVALARELRPDDVLKDNRMPGTDGLAASRAITGDPGLAGVRIIVLTTFEADEYVLDALRSGASGFLGKSVEPEELLDAIRVVARGEALLSPRATRSLIARFLAQPREGAPDLRPDSLAVLTDREREVVALVALGLSNTDIAARLYLSPLTVKTHVNRAMAKLDVRDRAQLVVIAYQTGLVRAGDTDPV

Samples

Sample ID Description Type Environment
1 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
4 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
34 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
38 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
39 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
45 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
48 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
49 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
50 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
51 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
52 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
53 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
54 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
55 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
58 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
59 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
60 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
61 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
62 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
63 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
64 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
65 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
66 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
67 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
72 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
73 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
74 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
75 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
76 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
77 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
78 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
79 3300042119 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218L_E14_082316_1902 Metagenome Rhizosphere
80 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
83 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
84 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
87 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
88 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
91 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
92 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
93 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
96 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
97 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
106 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
107 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
108 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
109 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
110 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
111 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
122 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
125 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
129 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
130 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
131 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
132 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
133 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
134 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
135 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
136 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
137 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
138 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
139 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
140 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
141 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
142 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
143 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
144 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
145 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
146 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
147 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
148 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
149 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
150 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
151 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
152 8002775197 Frankia nepalensis CN7 Isolate Nodule
153 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
154 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
155 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
156 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.6
Metatranscriptomes 0
Isolates 10.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.46
Nodule 0.5
Rhizoplane 5.45
Rhizosphere 69.31
Stem 0
Stem Tuber 0
Unclassified 3.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466957_0134971 3300044842 Bacteria 1585
2 JGI25406J46586_10050095 3300003203 Bacteria 1405
3 JGI25404J52841_10083083 3300003659 Unclassified 669
4 Ga0065714_10007467 3300005288 Bacteria 4851
5 Ga0070658_10486877 3300005327 Unclassified 1065
6 Ga0070680_100100279 3300005336 Bacteria 2403
7 Ga0070680_100386761 3300005336 Unclassified 1191
8 Ga0070692_10174245 3300005345 Unclassified 1242
9 Ga0070668_100023655 3300005347 Bacteria 4649
10 Ga0070714_100030471 3300005435 Bacteria 4490
11 Ga0070714_100099293 3300005435 Bacteria 2562
12 Ga0070713_100115005 3300005436 Bacteria 2351
13 Ga0070711_100246478 3300005439 Bacteria 1399
14 Ga0070705_100005886 3300005440 Bacteria 5995
15 Ga0070663_100001775 3300005455 Bacteria 12008
16 Ga0070698_100000600 3300005471 Bacteria 38715
17 Ga0070699_100377034 3300005518 Bacteria 1280
18 Ga0070679_100699207 3300005530 Bacteria 956
19 Ga0070695_100018601 3300005545 Bacteria 4220
20 Ga0068857_100161352 3300005577 Bacteria 2034
21 Ga0068860_100576953 3300005843 Bacteria 1129
22 Ga0081455_10007064 3300005937 Bacteria 11914
23 Ga0081455_10014790 3300005937 Bacteria 7614
24 Ga0081538_10005254 3300005981 Bacteria 11695
25 Ga0081540_1010281 3300005983 Bacteria 6349
26 Ga0081539_10000683 3300005985 Bacteria 67952
27 Ga0081539_10006402 3300005985 Bacteria 11322
28 Ga0070717_10000432 3300006028 Bacteria 26707
29 Ga0070717_10559454 3300006028 Bacteria 1036
30 Ga0075365_10001835 3300006038 Bacteria 9951
31 Ga0075365_10542858 3300006038 Bacteria 822
32 Ga0070716_100076473 3300006173 Bacteria 1984
33 Ga0070712_100150149 3300006175 Bacteria 1788
34 Ga0075367_10003053 3300006178 Bacteria 7845
35 Ga0075433_10300209 3300006852 Bacteria 1422
36 Ga0075434_100001670 3300006871 Bacteria 18927
37 Ga0075436_100049866 3300006914 Bacteria 2889
38 Ga0075436_100050450 3300006914 Bacteria 2871
39 Ga0075436_100248057 3300006914 Bacteria 1267
40 Ga0075435_100004120 3300007076 Bacteria 9970
41 Ga0075435_100146923 3300007076 Bacteria 1980
42 Ga0075435_100363025 3300007076 Bacteria 1242
43 Ga0099794_10179619 3300007265 Bacteria 1080
44 Ga0105244_10086119 3300009036 Bacteria 1550
45 Ga0114129_10512263 3300009147 Bacteria 1565
46 Ga0114129_10763775 3300009147 Bacteria 1236
47 Ga0114129_11244392 3300009147 Bacteria 925
48 Ga0157369_10205236 3300013105 Unclassified 2067
49 Ga0157369_10419100 3300013105 Bacteria 1388
50 Ga0182008_10035617 3300014497 Bacteria 2492
51 Ga0182005_1011412 3300015265 Bacteria 2533
52 Ga0207699_10030193 3300025906 Bacteria 3031
53 Ga0207699_10037424 3300025906 Bacteria 2774
54 Ga0207660_10326518 3300025917 Bacteria 1226
55 Ga0207700_10095346 3300025928 Bacteria 2360
56 Ga0207678_10316988 3300026067 Unclassified 1341
57 Ga0207683_10368250 3300026121 Bacteria 1320
58 Ga0307517_10113500 3300028786 Bacteria 2045
59 Ga0265328_10000019 3300031239 Bacteria 130536
60 Ga0265316_10232277 3300031344 Bacteria 1358
61 Ga0307513_10033955 3300031456 Bacteria 5729
62 Ga0307509_10136008 3300031507 Bacteria 2403
63 Ga0307508_10072984 3300031616 Bacteria 3007
64 Ga0307508_10150931 3300031616 Bacteria 1928
65 Ga0307514_10000605 3300031649 Bacteria 66775
66 Ga0307514_10004141 3300031649 Bacteria 13440
67 Ga0307516_10030139 3300031730 Bacteria 5478
68 Ga0307405_10155582 3300031731 Bacteria 1613
69 Ga0307405_10261040 3300031731 Bacteria 1294
70 Ga0307413_10387470 3300031824 Bacteria 1091
71 Ga0307518_10005072 3300031838 Bacteria 9421
72 Ga0307410_10571930 3300031852 Bacteria 939
73 Ga0307406_10544957 3300031901 Bacteria 948
74 Ga0307407_10041713 3300031903 Bacteria 2568
75 Ga0307416_100284827 3300032002 Bacteria 1632
76 Ga0307415_100026735 3300032126 Bacteria 3646
77 Ga0307415_100204898 3300032126 Bacteria 1568
78 Ga0307507_10007411 3300033179 Bacteria 15986
79 Ga0307507_10062771 3300033179 Bacteria 3446
80 Ga0307510_10354656 3300033180 Bacteria 916
81 Ga0373950_0005232 3300034818 Bacteria 1930
82 Ga0373940_0001287 3300035088 Bacteria 4461
83 Ga0373941_0032534 3300035115 Bacteria 1561
84 Ga0373942_0002929 3300035207 Bacteria 4043
85 Ga0373935_0055594 3300035692 Bacteria 2522
86 Ga0373947_0159582 3300035725 Bacteria 1458
87 Ga0373937_0301823 3300036401 Bacteria 1513
88 Ga0395898_0141615 3300037466 Bacteria 2302
89 Ga0436365_0861617 3300039437 Bacteria 832
90 Ga0436363_1204160 3300039450 Bacteria 1050
91 Ga0439438_032885 3300041405 Bacteria 1373
92 Ga0451791_1529911 3300041451 Bacteria 1616
93 Ga0451793_0467620 3300041452 Bacteria 1067
94 Ga0451806_144654 3300041462 Bacteria 1412
95 Ga0451853_0329350 3300041512 Bacteria 4164
96 Ga0451853_3508544 3300041512 Bacteria 1097
97 Ga0451853_3568053 3300041512 Bacteria 9215
98 Ga0439449_0023547 3300042007 Bacteria 2302
99 Ga0439463_020332 3300042016 Bacteria 1655
100 Ga0450915_009354 3300042119 Bacteria 669
101 Ga0450916_032193 3300042530 Bacteria 768
102 Ga0451577_0000076 3300042876 Bacteria 225346
103 Ga0451577_0001658 3300042876 Bacteria 28771
104 Ga0439440_0010775 3300042993 Bacteria 1918
105 Ga0466966_0068312 3300044684 Bacteria 2231
106 Ga0466961_0089040 3300044693 Bacteria 1950
107 Ga0466963_0232746 3300044694 Bacteria 1291
108 Ga0466963_0234472 3300044694 Bacteria 1286
109 Ga0466963_0510786 3300044694 Bacteria 848
110 Ga0466971_0095815 3300044719 Bacteria 1361
111 Ga0466971_0203982 3300044719 Bacteria 934
112 Ga0466970_0050856 3300044765 Bacteria 2211
113 Ga0466960_0120212 3300044901 Bacteria 1375
114 Ga0466960_0148283 3300044901 Bacteria 1251
115 Ga0466959_0058627 3300045049 Bacteria 2804
116 Ga0466959_0280414 3300045049 Unclassified 1144
117 Ga0466958_0303430 3300045836 Bacteria 1025
118 Ga0466967_0037510 3300045976 Bacteria 4149
119 Ga0495629_0101298 3300046459 Bacteria 2010
120 Ga0495628_0014951 3300046516 Bacteria 6491
121 Ga0495645_0008534 3300046543 Bacteria 7155
122 Ga0495604_0037805 3300047317 Bacteria 3799
123 Ga0495604_0206835 3300047317 Bacteria 1358
124 Ga0496101_0284928 3300048904 Bacteria 1292
125 Ga0496103_0221407 3300048906 Bacteria 1217
126 Ga0496108_0009063 3300048911 Bacteria 8062
127 Ga0496108_0421943 3300048911 Bacteria 1165
128 Ga0496110_0010344 3300048913 Bacteria 7583
129 Ga0496111_0365826 3300048914 Bacteria 1067
130 Ga0496112_0305845 3300048915 Bacteria 1535
131 Ga0496114_0051609 3300048917 Bacteria 3424
132 Ga0496117_0000561 3300048920 Bacteria 61150
133 Ga0496117_0392090 3300048920 Bacteria 703
134 Ga0496118_0000705 3300048921 Bacteria 54015
135 Ga0496119_0024853 3300048922 Bacteria 4200
136 Ga0496119_0068062 3300048922 Bacteria 2098
137 Ga0496119_0108831 3300048922 Bacteria 1542
138 Ga0496120_0156527 3300048923 Bacteria 1140
139 Ga0496120_0194085 3300048923 Bacteria 988
140 Ga0496122_0077756 3300048925 Bacteria 2328
141 Ga0496123_0061935 3300048926 Bacteria 2401
142 Ga0496124_0000234 3300048927 Bacteria 108472
143 Ga0496126_0001056 3300048929 Bacteria 46568
144 Ga0496126_0017457 3300048929 Bacteria 7148
145 Ga0501031_0163534 3300049568 Bacteria 1455
146 Ga0501033_0034965 3300049570 Bacteria 3766
147 Ga0501034_0212525 3300049571 Bacteria 1889
148 Ga0501034_0535465 3300049571 Bacteria 1082
149 Ga0501036_0095593 3300049572 Bacteria 2512
150 Ga0501036_0384321 3300049572 Bacteria 1171
151 Ga0501042_0109816 3300049578 Bacteria 1986
152 Ga0501043_0060042 3300049579 Bacteria 2984
153 Ga0501043_0337389 3300049579 Bacteria 1147
154 Ga0501046_0337548 3300049580 Bacteria 1096
155 Ga0501047_0022525 3300049581 Bacteria 6050
156 Ga0501047_0033330 3300049581 Bacteria 4971
157 Ga0501047_0429692 3300049581 Bacteria 1152
158 Ga0501069_0222281 3300049585 Bacteria 1098
159 Ga0501070_0110116 3300049586 Bacteria 2276
160 Ga0501076_0248395 3300049592 Bacteria 1456
161 Ga0501035_0076297 3300049822 Bacteria 2964
162 Ga0501044_0067872 3300049823 Bacteria 3633
163 Ga0501044_0187470 3300049823 Bacteria 2032
164 Ga0501044_0259382 3300049823 Bacteria 1677
165 Ga0501045_0353328 3300049824 Bacteria 1094
166 nmdc:mga0yw44_4823_c1 3300050492 Bacteria 6262
167 nmdc:mga0n895_317675_c1 3300050512 Bacteria 1578
168 nmdc:mga0n895_4368_c1 3300050512 Bacteria 11594
169 nmdc:mga0rr50_208803_c1 3300050513 Bacteria 1608
170 nmdc:mga0rr50_5149_c1 3300050513 Bacteria 7763
171 nmdc:mga08x19_110294_c1 3300050514 Bacteria 1835
172 nmdc:mga08x19_265761_c1 3300050514 Bacteria 1187
173 nmdc:mga08x19_42004_c1 3300050514 Bacteria 2913
174 Ga0495612_0027223 3300053078 Bacteria 2298
175 Ga0495619_0467154 3300053085 Bacteria 869
176 Ga0500643_000297 3300053087 Bacteria 41873
177 Ga0500573_0201315 3300053140 Bacteria 1057
178 Ga0500573_0216911 3300053140 Bacteria 1006
179 Ga0500600_0045038 3300053149 Bacteria 2527
180 Ga0500616_0000233 3300053153 Bacteria 87378
181 Ga0466962_0041330 3300061719 Bacteria 2206
182 2676476136 2675903058 Bacteria 6822861
183 2676484528 2675903059 Bacteria 8644972
184 2753270930 2751185782 Bacteria 11227053
185 2753301024 2751185788 Bacteria 4541048
186 2809593250 2808606522 Bacteria 9488490
187 2827633966 2827628540 Bacteria 6858585
188 2839988611 2839986021 Bacteria 3685650
189 2852643598 2852643534 Bacteria 3013378
190 2857736212 2857733635 Bacteria 3532004
191 2866616754 2866612099 Bacteria 7543886
192 2867347514 2867346516 Bacteria 7608576
193 2884698418 2884693830 Bacteria 11273186
194 2919044888 2919042368 Bacteria 3905917
195 2928106423 2928104781 Bacteria 3877447
196 2997605672 2997600082 Bacteria 9896405
197 8001786470 8001781756 Bacteria 9586736
198 8002780360 8002775197 Bacteria 10728764
199 8025534153 8025530807 Bacteria 8495698
200 8047714257 8047710418 Bacteria 11023148
201 8056057202 8056054917 Bacteria 5736694
202 8056061715 8056060235 Bacteria 7259403
203 Ga0466957_0134971
204 JGI25406J46586_10050095
205 JGI25404J52841_10083083
206 Ga0065714_10007467
207 Ga0070658_10486877
208 Ga0070680_100100279
209 Ga0070680_100386761
210 Ga0070692_10174245
211 Ga0070668_100023655
212 Ga0070714_100030471
213 Ga0070714_100099293
214 Ga0070713_100115005
215 Ga0070711_100246478
216 Ga0070705_100005886
217 Ga0070663_100001775
218 Ga0070698_100000600
219 Ga0070699_100377034
220 Ga0070679_100699207
221 Ga0070695_100018601
222 Ga0068857_100161352
223 Ga0068860_100576953
224 Ga0081455_10007064
225 Ga0081455_10014790
226 Ga0081538_10005254
227 Ga0081540_1010281
228 Ga0081539_10000683
229 Ga0081539_10006402
230 Ga0070717_10000432
231 Ga0070717_10559454
232 Ga0075365_10001835
233 Ga0075365_10542858
234 Ga0070716_100076473
235 Ga0070712_100150149
236 Ga0075367_10003053
237 Ga0075433_10300209
238 Ga0075434_100001670
239 Ga0075436_100049866
240 Ga0075436_100050450
241 Ga0075436_100248057
242 Ga0075435_100004120
243 Ga0075435_100146923
244 Ga0075435_100363025
245 Ga0099794_10179619
246 Ga0105244_10086119
247 Ga0114129_10512263
248 Ga0114129_10763775
249 Ga0114129_11244392
250 Ga0157369_10205236
251 Ga0157369_10419100
252 Ga0182008_10035617
253 Ga0182005_1011412
254 Ga0207699_10030193
255 Ga0207699_10037424
256 Ga0207660_10326518
257 Ga0207700_10095346
258 Ga0207678_10316988
259 Ga0207683_10368250
260 Ga0307517_10113500
261 Ga0265328_10000019
262 Ga0265316_10232277
263 Ga0307513_10033955
264 Ga0307509_10136008
265 Ga0307508_10072984
266 Ga0307508_10150931
267 Ga0307514_10000605
268 Ga0307514_10004141
269 Ga0307516_10030139
270 Ga0307405_10155582
271 Ga0307405_10261040
272 Ga0307413_10387470
273 Ga0307518_10005072
274 Ga0307410_10571930
275 Ga0307406_10544957
276 Ga0307407_10041713
277 Ga0307416_100284827
278 Ga0307415_100026735
279 Ga0307415_100204898
280 Ga0307507_10007411
281 Ga0307507_10062771
282 Ga0307510_10354656
283 Ga0373950_0005232
284 Ga0373940_0001287
285 Ga0373941_0032534
286 Ga0373942_0002929
287 Ga0373935_0055594
288 Ga0373947_0159582
289 Ga0373937_0301823
290 Ga0395898_0141615
291 Ga0436365_0861617
292 Ga0436363_1204160
293 Ga0439438_032885
294 Ga0451791_1529911
295 Ga0451793_0467620
296 Ga0451806_144654
297 Ga0451853_0329350
298 Ga0451853_3508544
299 Ga0451853_3568053
300 Ga0439449_0023547
301 Ga0439463_020332
302 Ga0450915_009354
303 Ga0450916_032193
304 Ga0451577_0000076
305 Ga0451577_0001658
306 Ga0439440_0010775
307 Ga0466966_0068312
308 Ga0466961_0089040
309 Ga0466963_0232746
310 Ga0466963_0234472
311 Ga0466963_0510786
312 Ga0466971_0095815
313 Ga0466971_0203982
314 Ga0466970_0050856
315 Ga0466960_0120212
316 Ga0466960_0148283
317 Ga0466959_0058627
318 Ga0466959_0280414
319 Ga0466958_0303430
320 Ga0466967_0037510
321 Ga0495629_0101298
322 Ga0495628_0014951
323 Ga0495645_0008534
324 Ga0495604_0037805
325 Ga0495604_0206835
326 Ga0496101_0284928
327 Ga0496103_0221407
328 Ga0496108_0009063
329 Ga0496108_0421943
330 Ga0496110_0010344
331 Ga0496111_0365826
332 Ga0496112_0305845
333 Ga0496114_0051609
334 Ga0496117_0000561
335 Ga0496117_0392090
336 Ga0496118_0000705
337 Ga0496119_0024853
338 Ga0496119_0068062
339 Ga0496119_0108831
340 Ga0496120_0156527
341 Ga0496120_0194085
342 Ga0496122_0077756
343 Ga0496123_0061935
344 Ga0496124_0000234
345 Ga0496126_0001056
346 Ga0496126_0017457
347 Ga0501031_0163534
348 Ga0501033_0034965
349 Ga0501034_0212525
350 Ga0501034_0535465
351 Ga0501036_0095593
352 Ga0501036_0384321
353 Ga0501042_0109816
354 Ga0501043_0060042
355 Ga0501043_0337389
356 Ga0501046_0337548
357 Ga0501047_0022525
358 Ga0501047_0033330
359 Ga0501047_0429692
360 Ga0501069_0222281
361 Ga0501070_0110116
362 Ga0501076_0248395
363 Ga0501035_0076297
364 Ga0501044_0067872
365 Ga0501044_0187470
366 Ga0501044_0259382
367 Ga0501045_0353328
368 nmdc:mga0yw44_4823_c1
369 nmdc:mga0n895_317675_c1
370 nmdc:mga0n895_4368_c1
371 nmdc:mga0rr50_208803_c1
372 nmdc:mga0rr50_5149_c1
373 nmdc:mga08x19_110294_c1
374 nmdc:mga08x19_265761_c1
375 nmdc:mga08x19_42004_c1
376 Ga0495612_0027223
377 Ga0495619_0467154
378 Ga0500643_000297
379 Ga0500573_0201315
380 Ga0500573_0216911
381 Ga0500600_0045038
382 Ga0500616_0000233
383 Ga0466962_0041330
384 2676476136
385 2676484528
386 2753270930
387 2753301024
388 2809593250
389 2827633966
390 2839988611
391 2852643598
392 2857736212
393 2866616754
394 2867347514
395 2884698418
396 2919044888
397 2928106423
398 2997605672
399 8001786470
400 8002780360
401 8025534153
402 8047714257
403 8056057202
404 8056061715

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

166

222

0.98

PF00072

Response_reg

Response regulator receiver domain

14

128

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

163

210

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9863 157 219
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9862 157 219
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9801 157 219
4wu4-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 22bp dna 0.978 157 220
4wul-assembly1.cif.gz_B crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9769 157 219
ID Description Score Start End Superfamily
af_P52106_149_214_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.986 159 213 1.10.10.10
4if4C02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9687 157 220 1.10.10.10
4if4D02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9684 157 220 1.10.10.10
4if4B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9619 156 220 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9603 159 213 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A538CXV4-F1-model_v4 Response regulator transcription factor 0.9488 1 223 GO:0000160
GO:0003677
GO:0006355
AF-A0A3A9ZYZ5-F1-model_v4 Response regulator 0.9481 2 221 GO:0000160
GO:0003677
GO:0006355
AF-A0A4R5EK26-F1-model_v4 Response regulator 0.9466 1 224 GO:0000155
GO:0003677
GO:0006355
GO:0016020
GO:0046983
AF-A0A2Z5R051-F1-model_v4 Putative two-component system response regulator 0.9462 2 127 GO:0000160
GO:0003677
AF-A0A1Z1WM40-F1-model_v4 LuxR family transcriptional regulator 0.9458 1 221 GO:0000160
GO:0003677
GO:0006355

Map