F309066

General Info

Members Datasets Scaffolds Average Seq Length
201 157 402 1009

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0018495|Ga0501047_0018495_3127_6249
Length 1032
Sequence MRSFTDIFIRRPVLAMVVSLLLLVLGLRSVTSLPILQYPRTENAVVTITTTYYGADPALVAGFITTPLENAVAQANGIDYMTSTSRTSVSTITANLRLNYDSDKALTEITTKVNSVLNQLPSGAQQPVLAVAVGETIDAMYIGFSSDVLAPNQITDYLVRVVQPKLQAVQGVQTAELLGANNFALRAWLDPQKMAAYGLTGTDINQALANNDFLSALGTTKGQMVQVNLTASTSLHTVEEFRNLVVKQSGGAVVRLGDVANVTLGSDDYETAVGFDGQRAVYIGIKVAPTANLLDVIAGVRAAFPEVQSQLPQGLEGKIVYDSTEFVNSSINEVIRTLVEVFLFLGTPRSVVIPVVAIPLSLIGTFVMMLAFGFTINLLTLLALVLAIGLVVDDAIIVVENVNRHLDEGMRPIPAAMIAARELGGPIIAMTIVLIAVYVPLGFQGGLTGALFVEFAFTLVGAVTVSAIVALTLSPMMASRLLKPHQKGGRGLEARLVDLIDTVFDHVRARHRRSLSNSLNYLSVTAVFALLVFPAIYFLYTYSQKDVAPQEDQGVLITLSTAAPNSTLQQRQLYSAQVFKHFAAYPETDHVFQLDLPGQSIAGMVLKPWDQRSRTSNQLQPILSGDMGRIAGARVAVFQPPALPGSNGLPVQFVIGTTEPFNRLNEVAQQFLGQALQSGMFMFLDSDLKIDQPQVTVVIDRDKTAQLGLKMSDVGAALASMLGGGYVNYFSLDGRSYKVIPQVQQRYRLNPDQVLNYYIRTADGTPIPLSTVAHVVTETVPQSLNHFQQLNGATIQGIVTPGVTLGDAIAYLQDLAARTLPSGYTVDYGGPSRQYIQESSGFAITAILAFILIFLALAALFESFRDPIVILLSVPMSIAGALIFINIGLGGANWNIYTQVGLFTLGGLISKHGILIVEFANDLRRKGMAKRQAIEEATAIRLRPILMTTAAMALGVVPLLLASGAGAVSRFAMGLVIFTGIAIGTLFTLYVVPAAYMLISSNRSMVEEDHEEPIGPSRQLPPPGDAPPLPSA

Samples

Sample ID Description Type Environment
1 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
4 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
20 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
21 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
22 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
30 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
31 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
32 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
45 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
46 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
47 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
50 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
53 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
54 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
55 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
56 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
57 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
58 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
59 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
60 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
61 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
62 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
63 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
64 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
65 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
66 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
67 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
68 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
69 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
70 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
71 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
72 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
73 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
74 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
85 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
86 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
87 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
88 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
89 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
90 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
91 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
92 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
93 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
94 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
95 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
96 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
99 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
100 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
101 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
102 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
107 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
108 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
109 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
110 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
111 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
112 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
113 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
114 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
115 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
116 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
117 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
118 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
121 2524023205 Bradyrhizobium sp. Cp5.3 Isolate Nodule
122 2721755755 Bradyrhizobium icense LMTR 13 Isolate Nodule
123 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
124 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
125 2744054633 Bradyrhizobium neotropicale BR 10247 Isolate Unclassified
126 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
127 2824617872 Bradyrhizobium sp. HAMBI 2133 Isolate Unclassified
128 2824626560 Bradyrhizobium sp. HAMBI 2149 Isolate Unclassified
129 2824635225 Bradyrhizobium sp. HAMBI 2136 Isolate Unclassified
130 2824644064 Bradyrhizobium sp. HAMBI 2137 Isolate Unclassified
131 2824714736 Bradyrhizobium sp. HAMBI 2151 Isolate Unclassified
132 2824723954 Bradyrhizobium sp. HAMBI 2152 Isolate Unclassified
133 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
134 2876761206 Bradyrhizobium centrolobii BR 10245 Isolate Nodule
135 2879127579 Bradyrhizobium canariense UBMA052 Isolate Nodule
136 2879142872 Bradyrhizobium canariense UBMA061 Isolate Nodule
137 2885366525 Bradyrhizobium sp. LVM 105 Isolate Unclassified
138 2885409591 Bradyrhizobium sp. NAS80.1 Isolate Unclassified
139 2891088606 Methylosinus sp. 3S-1 Isolate Rhizosphere
140 2906643746 Bradyrhizobium genosp. SA-3 Rp7b Isolate Unclassified
141 2935675223 Bradyrhizobium sp. LA2.1 Isolate Nodule
142 2935684952 Bradyrhizobium sp. LA3.X Isolate Nodule
143 2935713505 Bradyrhizobium sp. LA6.12 Isolate Nodule
144 2935722832 Bradyrhizobium sp. LA6.3 Isolate Nodule
145 2935732158 Bradyrhizobium sp. LA6.4 Isolate Nodule
146 2935741537 Bradyrhizobium sp. LA6.7 Isolate Nodule
147 2935750917 Bradyrhizobium sp. LA6.8 Isolate Nodule
148 2935760218 Bradyrhizobium sp. LA7.1 Isolate Nodule
149 2935785616 Bradyrhizobium sp. LB5.2 Isolate Nodule
150 2935793552 Bradyrhizobium sp. LB8.2 Isolate Nodule
151 2940556831 Bradyrhizobium sp. LA8.1 Isolate Nodule
152 2941531003 Bradyrhizobium sp. LB11.1 Isolate Nodule
153 8002060224 Methylocystis sp. Sn-Cys Isolate Unclassified
154 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
155 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
156 8019648815 Bradyrhizobium sp. GM24.11 Isolate Nodule
157 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 81.09
Metatranscriptomes 0
Isolates 18.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.43
Nodule 9.95
Rhizoplane 0
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501047_0018495 3300049581 Bacteria 6683
2 JGI25153J46596_10002414 3300003215 Bacteria 10771
3 Ga0055543_1001347 3300004625 Bacteria 9951
4 Ga0065165_1000342 3300005262 Bacteria 76302
5 Ga0070658_10014528 3300005327 Bacteria 6320
6 Ga0070670_100006173 3300005331 Bacteria 10130
7 Ga0070680_100052576 3300005336 Bacteria 3324
8 Ga0070709_10002731 3300005434 Bacteria 9544
9 Ga0070714_100000795 3300005435 Bacteria 22351
10 Ga0070711_100005220 3300005439 Bacteria 7747
11 Ga0070684_100003084 3300005535 Bacteria 12438
12 Ga0070665_100014595 3300005548 Bacteria 7883
13 Ga0070704_100019952 3300005549 Bacteria 4313
14 Ga0068855_100012397 3300005563 Bacteria 10295
15 Ga0068855_100019564 3300005563 Bacteria 8132
16 Ga0068858_100025370 3300005842 Bacteria 5515
17 Ga0081455_10009715 3300005937 Bacteria 9864
18 Ga0081455_10023499 3300005937 Bacteria 5733
19 Ga0075365_10023319 3300006038 Bacteria 3891
20 Ga0075364_10000475 3300006051 Bacteria 20433
21 Ga0075364_10006149 3300006051 Bacteria 7029
22 Ga0070712_100006384 3300006175 Bacteria 7311
23 Ga0075367_10000590 3300006178 Bacteria 13920
24 Ga0075369_10000026 3300006186 Bacteria 41782
25 Ga0075427_10000080 3300006194 Bacteria 7586
26 Ga0075370_10000060 3300006353 Bacteria 32430
27 Ga0099794_10001216 3300007265 Bacteria 8884
28 Ga0105240_10000218 3300009093 Bacteria 115562
29 Ga0105240_10011626 3300009093 Bacteria 12243
30 Ga0105240_10031480 3300009093 Bacteria 6880
31 Ga0105239_10086130 3300010375 Bacteria 3463
32 Ga0157370_10007773 3300013104 Bacteria 11623
33 Ga0157370_10053598 3300013104 Bacteria 3845
34 Ga0157369_10001216 3300013105 Bacteria 32070
35 Ga0213872_10002352 3300021361 Bacteria 11227
36 Ga0209233_1005729 3300025261 Bacteria 4096
37 Ga0209758_1000794 3300025297 Bacteria 44893
38 Ga0207426_1005150 3300025302 Bacteria 6085
39 Ga0207707_10003953 3300025912 Bacteria 13167
40 Ga0207707_10021286 3300025912 Bacteria 5668
41 Ga0207707_10054487 3300025912 Bacteria 3481
42 Ga0207695_10060092 3300025913 Bacteria 3937
43 Ga0207693_10014275 3300025915 Bacteria 6390
44 Ga0207652_10012956 3300025921 Bacteria 6747
45 Ga0207650_10003919 3300025925 Bacteria 10180
46 Ga0207700_10011555 3300025928 Bacteria 5637
47 Ga0207664_10000199 3300025929 Bacteria 45058
48 Ga0207664_10019665 3300025929 Bacteria 4996
49 Ga0207665_10015718 3300025939 Bacteria 4968
50 Ga0207661_10003442 3300025944 Bacteria 10986
51 Ga0207667_10034980 3300025949 Bacteria 5392
52 Ga0268266_10006709 3300028379 Bacteria 10500
53 Ga0265326_10002274 3300028558 Bacteria 6503
54 Ga0265334_10004890 3300028573 Bacteria 5892
55 Ga0265323_10002863 3300028653 Bacteria 7751
56 Ga0265336_10000343 3300028666 Bacteria 30744
57 Ga0265338_10000280 3300028800 Bacteria 91942
58 Ga0265338_10031768 3300028800 Bacteria 5168
59 Ga0265332_10002578 3300031238 Bacteria 9175
60 Ga0265328_10000480 3300031239 Bacteria 18549
61 Ga0265328_10002842 3300031239 Bacteria 7729
62 Ga0265325_10013881 3300031241 Bacteria 4571
63 Ga0265340_10019620 3300031247 Bacteria 3481
64 Ga0265339_10000069 3300031249 Bacteria 90219
65 Ga0265339_10004048 3300031249 Bacteria 10121
66 Ga0265331_10003678 3300031250 Bacteria 9768
67 Ga0265313_10000611 3300031595 Bacteria 36999
68 Ga0265313_10000831 3300031595 Bacteria 31241
69 Ga0307508_10001406 3300031616 Bacteria 27107
70 Ga0316575_10000087 3300031665 Bacteria 22107
71 Ga0316575_10009630 3300031665 Bacteria 3539
72 Ga0316579_10005845 3300031691 Bacteria 4988
73 Ga0316579_10006132 3300031691 Bacteria 4885
74 Ga0265314_10002937 3300031711 Bacteria 16888
75 Ga0265314_10005929 3300031711 Bacteria 10924
76 Ga0265342_10000012 3300031712 Bacteria 206037
77 Ga0265342_10017071 3300031712 Bacteria 4727
78 Ga0316583_10002326 3300032133 Bacteria 6557
79 Ga0316580_10000468 3300032139 Bacteria 9328
80 Ga0373934_0000497 3300035086 Bacteria 13801
81 Ga0373936_0002185 3300035113 Bacteria 7293
82 Ga0373953_0007544 3300035117 Bacteria 3650
83 Ga0373954_0003300 3300035118 Bacteria 6816
84 Ga0373956_0004380 3300035119 Bacteria 5657
85 Ga0373957_0001370 3300035120 Bacteria 6562
86 Ga0373957_0003833 3300035120 Bacteria 4509
87 Ga0373955_0004719 3300035172 Bacteria 6058
88 Ga0316574_0004044 3300035398 Bacteria 7642
89 Ga0373933_0001250 3300035724 Bacteria 15014
90 Ga0373933_0001427 3300035724 Bacteria 14007
91 Ga0373937_0000781 3300036401 Bacteria 27352
92 Ga0373937_0002757 3300036401 Bacteria 14654
93 Ga0373937_0007870 3300036401 Bacteria 9238
94 Ga0373937_0014990 3300036401 Bacteria 6848
95 Ga0373937_0026203 3300036401 Bacteria 5268
96 Ga0316582_0000385 3300036647 Bacteria 15972
97 Ga0316582_0008126 3300036647 Bacteria 5620
98 Ga0316584_0035202 3300036712 Bacteria 3715
99 Ga0395899_0005298 3300037312 Bacteria 10013
100 Ga0395900_0003772 3300037418 Bacteria 16235
101 Ga0395900_0030496 3300037418 Bacteria 5537
102 Ga0395898_0001472 3300037466 Bacteria 32920
103 Ga0395898_0002575 3300037466 Bacteria 21233
104 Ga0395898_0011324 3300037466 Bacteria 9270
105 Ga0395901_0008574 3300038443 Bacteria 10333
106 Ga0395901_0031028 3300038443 Bacteria 5509
107 Ga0436361_0314886 3300039447 Bacteria 11377
108 Ga0451577_0014884 3300042876 Bacteria 7248
109 Ga0453684_0000015 3300044712 Bacteria 969198
110 Ga0453684_0000020 3300044712 Bacteria 879938
111 Ga0453684_0006537 3300044712 Bacteria 22075
112 Ga0466957_0016356 3300044842 Bacteria 4339
113 Ga0451576_0000071 3300045051 Bacteria 258795
114 Ga0495592_0010587 3300046454 Bacteria 6955
115 Ga0495592_0015854 3300046454 Bacteria 5716
116 Ga0495651_0000710 3300046462 Bacteria 25816
117 Ga0495651_0002168 3300046462 Bacteria 15194
118 Ga0495651_0004101 3300046462 Bacteria 11146
119 Ga0495651_0036874 3300046462 Bacteria 3806
120 Ga0495664_0004494 3300046477 Bacteria 7632
121 Ga0495608_0006202 3300046511 Bacteria 8484
122 Ga0495628_0000904 3300046516 Bacteria 27219
123 Ga0495628_0002107 3300046516 Bacteria 18031
124 Ga0495652_0002006 3300046529 Bacteria 21708
125 Ga0495645_0007379 3300046543 Bacteria 7647
126 Ga0495634_0006108 3300046642 Bacteria 9176
127 Ga0495657_0023084 3300046675 Bacteria 4449
128 Ga0495599_0003743 3300046678 Bacteria 8918
129 Ga0495623_0009271 3300046679 Bacteria 6388
130 Ga0495646_0026771 3300046680 Bacteria 3619
131 Ga0495600_0001451 3300046809 Bacteria 13143
132 Ga0495674_0011661 3300047319 Bacteria 8289
133 Ga0495680_0007042 3300047322 Bacteria 10364
134 Ga0495675_0004830 3300047444 Bacteria 8196
135 Ga0495675_0025948 3300047444 Bacteria 3734
136 Ga0495684_0025482 3300047471 Bacteria 4545
137 Ga0495602_0004556 3300048088 Bacteria 14461
138 Ga0495602_0004601 3300048088 Bacteria 14394
139 Ga0496116_0000005 3300048919 Bacteria 827804
140 Ga0496117_0000041 3300048920 Bacteria 317207
141 Ga0496121_0000126 3300048924 Bacteria 168873
142 Ga0501034_0000758 3300049571 Bacteria 48575
143 nmdc:mga03n38_109_c1 3300050490 Bacteria 17778
144 nmdc:mga00v17_181_c1 3300050491 Bacteria 37478
145 nmdc:mga00v17_294_c1 3300050491 Bacteria 29063
146 nmdc:mga00v17_335_c1 3300050491 Bacteria 26443
147 nmdc:mga0yw44_148_c1 3300050492 Bacteria 24290
148 nmdc:mga06z11_1872_c1 3300050494 Bacteria 7925
149 nmdc:mga06z11_605_c1 3300050494 Bacteria 13118
150 nmdc:mga07m45_51_c1 3300050496 Bacteria 25537
151 nmdc:mga0sz30_14_c3 3300050516 Bacteria 41808
152 nmdc:mga0sz30_1918_c1 3300050516 Bacteria 7425
153 Ga0495601_0000652 3300053077 Bacteria 18500
154 Ga0495601_0003257 3300053077 Bacteria 9275
155 Ga0495601_0025761 3300053077 Bacteria 3628
156 Ga0495612_0002270 3300053078 Bacteria 7909
157 Ga0495619_0000949 3300053085 Bacteria 18989
158 Ga0495619_0006506 3300053085 Bacteria 7393
159 Ga0500556_0004288 3300053104 Bacteria 4066
160 Ga0500652_000707 3300053131 Bacteria 11326
161 Ga0500559_0000704 3300053136 Bacteria 21945
162 Ga0500588_0000024 3300053146 Bacteria 36113
163 Ga0500616_0000761 3300053153 Bacteria 37071
164 2513592795 2513237087 Bacteria 5817514
165 2524441163 2524023205 Bacteria 8918781
166 2723847012 2721755755 Bacteria 8322773
167 2728748736 2728368998 Bacteria 8720350
168 2739348381 2738543031 Bacteria 5769731
169 2745082636 2744054633 Bacteria 8678936
170 2821447618 2821443989 Bacteria 7658172
171 2824623066 2824617872 Bacteria 8814715
172 2824632817 2824626560 Bacteria 8813858
173 2824640589 2824635225 Bacteria 8785348
174 2824647775 2824644064 Bacteria 8743947
175 2824721108 2824714736 Bacteria 8717648
176 2824729756 2824723954 Bacteria 8758240
177 2844533370 2844533157 Bacteria 7517899
178 2876765300 2876761206 Bacteria 10111113
179 2879129778 2879127579 Bacteria 8294491
180 2879147714 2879142872 Bacteria 8267021
181 2885372532 2885366525 Bacteria 8326213
182 2885413839 2885409591 Bacteria 9235467
183 2891090388 2891088606 Bacteria 4762464
184 2906649754 2906643746 Bacteria 8722424
185 2935683574 2935675223 Bacteria 9928132
186 2935693451 2935684952 Bacteria 9590419
187 2935721641 2935713505 Bacteria 9608509
188 2935731029 2935722832 Bacteria 9608746
189 2935740780 2935732158 Bacteria 9706831
190 2935750044 2935741537 Bacteria 9707219
191 2935759434 2935750917 Bacteria 9590372
192 2935769218 2935760218 Bacteria 9817913
193 2935788655 2935785616 Bacteria 7962367
194 2935795719 2935793552 Bacteria 8012592
195 2940565338 2940556831 Bacteria 9590747
196 2941538035 2941531003 Bacteria 7653939
197 8002062693 8002060224 Bacteria 4026565
198 8005662132 8005658619 Bacteria 4500593
199 8018155587 8018150411 Bacteria 5549903
200 8019657219 8019648815 Bacteria 10014479
201 8055434848 8055431914 Bacteria 4551896
202 Ga0501047_0018495
203 JGI25153J46596_10002414
204 Ga0055543_1001347
205 Ga0065165_1000342
206 Ga0070658_10014528
207 Ga0070670_100006173
208 Ga0070680_100052576
209 Ga0070709_10002731
210 Ga0070714_100000795
211 Ga0070711_100005220
212 Ga0070684_100003084
213 Ga0070665_100014595
214 Ga0070704_100019952
215 Ga0068855_100012397
216 Ga0068855_100019564
217 Ga0068858_100025370
218 Ga0081455_10009715
219 Ga0081455_10023499
220 Ga0075365_10023319
221 Ga0075364_10000475
222 Ga0075364_10006149
223 Ga0070712_100006384
224 Ga0075367_10000590
225 Ga0075369_10000026
226 Ga0075427_10000080
227 Ga0075370_10000060
228 Ga0099794_10001216
229 Ga0105240_10000218
230 Ga0105240_10011626
231 Ga0105240_10031480
232 Ga0105239_10086130
233 Ga0157370_10007773
234 Ga0157370_10053598
235 Ga0157369_10001216
236 Ga0213872_10002352
237 Ga0209233_1005729
238 Ga0209758_1000794
239 Ga0207426_1005150
240 Ga0207707_10003953
241 Ga0207707_10021286
242 Ga0207707_10054487
243 Ga0207695_10060092
244 Ga0207693_10014275
245 Ga0207652_10012956
246 Ga0207650_10003919
247 Ga0207700_10011555
248 Ga0207664_10000199
249 Ga0207664_10019665
250 Ga0207665_10015718
251 Ga0207661_10003442
252 Ga0207667_10034980
253 Ga0268266_10006709
254 Ga0265326_10002274
255 Ga0265334_10004890
256 Ga0265323_10002863
257 Ga0265336_10000343
258 Ga0265338_10000280
259 Ga0265338_10031768
260 Ga0265332_10002578
261 Ga0265328_10000480
262 Ga0265328_10002842
263 Ga0265325_10013881
264 Ga0265340_10019620
265 Ga0265339_10000069
266 Ga0265339_10004048
267 Ga0265331_10003678
268 Ga0265313_10000611
269 Ga0265313_10000831
270 Ga0307508_10001406
271 Ga0316575_10000087
272 Ga0316575_10009630
273 Ga0316579_10005845
274 Ga0316579_10006132
275 Ga0265314_10002937
276 Ga0265314_10005929
277 Ga0265342_10000012
278 Ga0265342_10017071
279 Ga0316583_10002326
280 Ga0316580_10000468
281 Ga0373934_0000497
282 Ga0373936_0002185
283 Ga0373953_0007544
284 Ga0373954_0003300
285 Ga0373956_0004380
286 Ga0373957_0001370
287 Ga0373957_0003833
288 Ga0373955_0004719
289 Ga0316574_0004044
290 Ga0373933_0001250
291 Ga0373933_0001427
292 Ga0373937_0000781
293 Ga0373937_0002757
294 Ga0373937_0007870
295 Ga0373937_0014990
296 Ga0373937_0026203
297 Ga0316582_0000385
298 Ga0316582_0008126
299 Ga0316584_0035202
300 Ga0395899_0005298
301 Ga0395900_0003772
302 Ga0395900_0030496
303 Ga0395898_0001472
304 Ga0395898_0002575
305 Ga0395898_0011324
306 Ga0395901_0008574
307 Ga0395901_0031028
308 Ga0436361_0314886
309 Ga0451577_0014884
310 Ga0453684_0000015
311 Ga0453684_0000020
312 Ga0453684_0006537
313 Ga0466957_0016356
314 Ga0451576_0000071
315 Ga0495592_0010587
316 Ga0495592_0015854
317 Ga0495651_0000710
318 Ga0495651_0002168
319 Ga0495651_0004101
320 Ga0495651_0036874
321 Ga0495664_0004494
322 Ga0495608_0006202
323 Ga0495628_0000904
324 Ga0495628_0002107
325 Ga0495652_0002006
326 Ga0495645_0007379
327 Ga0495634_0006108
328 Ga0495657_0023084
329 Ga0495599_0003743
330 Ga0495623_0009271
331 Ga0495646_0026771
332 Ga0495600_0001451
333 Ga0495674_0011661
334 Ga0495680_0007042
335 Ga0495675_0004830
336 Ga0495675_0025948
337 Ga0495684_0025482
338 Ga0495602_0004556
339 Ga0495602_0004601
340 Ga0496116_0000005
341 Ga0496117_0000041
342 Ga0496121_0000126
343 Ga0501034_0000758
344 nmdc:mga03n38_109_c1
345 nmdc:mga00v17_181_c1
346 nmdc:mga00v17_294_c1
347 nmdc:mga00v17_335_c1
348 nmdc:mga0yw44_148_c1
349 nmdc:mga06z11_1872_c1
350 nmdc:mga06z11_605_c1
351 nmdc:mga07m45_51_c1
352 nmdc:mga0sz30_14_c3
353 nmdc:mga0sz30_1918_c1
354 Ga0495601_0000652
355 Ga0495601_0003257
356 Ga0495601_0025761
357 Ga0495612_0002270
358 Ga0495619_0000949
359 Ga0495619_0006506
360 Ga0500556_0004288
361 Ga0500652_000707
362 Ga0500559_0000704
363 Ga0500588_0000024
364 Ga0500616_0000761
365 2513592795
366 2524441163
367 2723847012
368 2728748736
369 2739348381
370 2745082636
371 2821447618
372 2824623066
373 2824632817
374 2824640589
375 2824647775
376 2824721108
377 2824729756
378 2844533370
379 2876765300
380 2879129778
381 2879147714
382 2885372532
383 2885413839
384 2891090388
385 2906649754
386 2935683574
387 2935693451
388 2935721641
389 2935731029
390 2935740780
391 2935750044
392 2935759434
393 2935769218
394 2935788655
395 2935795719
396 2940565338
397 2941538035
398 8002062693
399 8005662132
400 8018155587
401 8019657219
402 8055434848

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

4

1000

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u8y-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.9254 3 1006
6zo5-assembly1.cif.gz_C fusidic acid binding to the tm1/tm2 groove of acrb-g619p_g621p 0.9252 3 1006
4u95-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.9247 3 1006
7rr7-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.9217 3 1006
7rr8-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.9214 3 1006
ID Description Score Start End Superfamily
af_Q2FVZ5_39_104_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9722 44 96 3.30.70.1430
3w9iD05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9702 848 1005 1.20.1640.10
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9651 855 1003 1.20.1640.10
af_P37637_331_506_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9644 327 497 1.20.1640.10
af_P24177_305_504_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9617 299 489 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A352E810-F1-model_v4 deleted 0.9729 820 1005
AF-A0A2R7S2T7-F1-model_v4 deleted 0.9679 845 1006
AF-A0A2W4NSX9-F1-model_v4 Multidrug transporter AcrB 0.9616 819 1008 GO:0005886
GO:0042910
AF-A0A3B9U354-F1-model_v4 deleted 0.9574 841 1004
AF-A0A4R7A101-F1-model_v4 deleted 0.9562 3 1006

Map