F308995

General Info

Members Datasets Scaffolds Average Seq Length
201 138 201 442

Family's Representative Sequence

Representative Sequence 3300048912|Ga0496109_0002847|Ga0496109_0002847_4077_5651
Length 514
Sequence MSPDPAADGRTGASAEVLRGTDATTTDPVEQNDDALPPLRAELSENRPAKPYENRPERGDQIELTVDRFAHGGAGVARMDGGYVVFVTGAIPGDRVLAEVGKRKRSYAEARTIELLEPSPDRVEPRGDHPGAPWQVLTYERQLKEKYGQVVDAMQRIGHFEDPPMLPIVGAVEEWRYRNKIEFSFAPDDTNDPAKKGIACGFHPQGEWWRVVDVEDFVLASEAMNNVRTQVVAWARENGITAFDRKARTGILRNLVIREGKRTGQLQARLVVGPGKFDIDSLIEAVDVDGLLLTKTDAQSETTHGGETRILSGKERLEEELHGITYRISAEAFFQTNTEMAEQLYALVRDAADLQGWERLVDLYCGIGTIGLTLVPRVAELWGIESIPEAIEDAQLVAKREGFDGKAHFVAGDVRTALPKLLEDGFKPDIAVVDPPRAGLSQKVVRRIVDAAPKRIVYVSCNPTTLAPNARQLVDAGYILKSVQPVDMFPQTPHIEAVSVFERGPDGVRNPDRD

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
44 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
61 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
62 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
63 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
64 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
68 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
75 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
76 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
79 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
80 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
81 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
82 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
83 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
84 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
85 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
86 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
87 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
88 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
89 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
90 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
91 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
92 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
93 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
94 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
95 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
98 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
99 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
113 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
114 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
115 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
116 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
117 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
118 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
119 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
120 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
121 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
122 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
123 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
124 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
126 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
133 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
134 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
135 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
136 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
137 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.99
Nodule 0
Rhizoplane 7.46
Rhizosphere 87.06
Stem 0
Stem Tuber 0
Unclassified 2.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10039547 3300003203 Bacteria 1680
2 Ga0070676_10100137 3300005328 Bacteria 1789
3 Ga0070680_100006927 3300005336 Bacteria 8636
4 Ga0070660_100004930 3300005339 Bacteria 9231
5 Ga0070661_100009695 3300005344 Bacteria 6679
6 Ga0070668_100007028 3300005347 Bacteria 8340
7 Ga0070668_100021473 3300005347 Bacteria 4877
8 Ga0070674_100023861 3300005356 Bacteria 3966
9 Ga0070659_100003139 3300005366 Bacteria 11764
10 Ga0070711_100036284 3300005439 Bacteria 3302
11 Ga0070700_100023617 3300005441 Bacteria 3598
12 Ga0070700_100056942 3300005441 Bacteria 2452
13 Ga0070662_100004057 3300005457 Bacteria 9197
14 Ga0070681_10217023 3300005458 Bacteria 1828
15 Ga0070679_100005918 3300005530 Bacteria 11364
16 Ga0070684_100011615 3300005535 Bacteria 7019
17 Ga0070665_100006384 3300005548 Bacteria 12017
18 Ga0070704_100011003 3300005549 Bacteria 5521
19 Ga0070664_100018203 3300005564 Bacteria 5766
20 Ga0068852_100002560 3300005616 Bacteria 12525
21 Ga0068861_100055658 3300005719 Bacteria 3017
22 Ga0081455_10028342 3300005937 Bacteria 5117
23 Ga0081455_10074513 3300005937 Bacteria 2803
24 Ga0081538_10000170 3300005981 Bacteria 69585
25 Ga0081538_10000698 3300005981 Bacteria 36881
26 Ga0081538_10001059 3300005981 Bacteria 29324
27 Ga0081538_10001807 3300005981 Bacteria 21575
28 Ga0081538_10001947 3300005981 Bacteria 20687
29 Ga0081538_10001989 3300005981 Bacteria 20415
30 Ga0081538_10005229 3300005981 Bacteria 11730
31 Ga0081538_10007217 3300005981 Bacteria 9647
32 Ga0081538_10010340 3300005981 Bacteria 7655
33 Ga0081538_10014209 3300005981 Bacteria 6251
34 Ga0081538_10039302 3300005981 Bacteria 3036
35 Ga0081538_10092487 3300005981 Bacteria 1557
36 Ga0081540_1000827 3300005983 Bacteria 28230
37 Ga0081540_1037157 3300005983 Bacteria 2585
38 Ga0081539_10003432 3300005985 Bacteria 19492
39 Ga0081539_10003511 3300005985 Bacteria 19127
40 Ga0081539_10035929 3300005985 Bacteria 2971
41 Ga0075365_10000210 3300006038 Bacteria 19586
42 Ga0075365_10000339 3300006038 Bacteria 16694
43 Ga0075365_10106609 3300006038 Bacteria 1923
44 Ga0075363_100036337 3300006048 Bacteria 2583
45 Ga0070712_100023424 3300006175 Bacteria 4079
46 Ga0075428_100015011 3300006844 Bacteria 8605
47 Ga0075428_100067903 3300006844 Bacteria 3901
48 Ga0075431_100061325 3300006847 Bacteria 3881
49 Ga0075431_100098170 3300006847 Bacteria 3024
50 Ga0075431_100127392 3300006847 Bacteria 2627
51 Ga0075433_10136834 3300006852 Bacteria 2177
52 Ga0075429_100015041 3300006880 Bacteria 6709
53 Ga0111539_10003410 3300009094 Bacteria 20938
54 Ga0111539_10009652 3300009094 Bacteria 12182
55 Ga0111539_10247028 3300009094 Bacteria 2077
56 Ga0105245_10000955 3300009098 Bacteria 26277
57 Ga0105245_10002400 3300009098 Bacteria 16931
58 Ga0105245_10226713 3300009098 Bacteria 1805
59 Ga0114129_10005988 3300009147 Bacteria 17228
60 Ga0114129_10019530 3300009147 Bacteria 9648
61 Ga0114129_10092408 3300009147 Bacteria 4192
62 Ga0105243_10107013 3300009148 Bacteria 2332
63 Ga0105237_10131840 3300009545 Bacteria 2493
64 Ga0105238_10018930 3300009551 Bacteria 7011
65 Ga0105249_10146266 3300009553 Bacteria 2271
66 Ga0157370_10009936 3300013104 Bacteria 10076
67 Ga0163162_10034967 3300013306 Bacteria 5003
68 Ga0157372_10040551 3300013307 Bacteria 5143
69 Ga0157375_10084307 3300013308 Bacteria 3226
70 Ga0157379_10002657 3300014968 Bacteria 15053
71 Ga0157379_10058669 3300014968 Bacteria 3442
72 Ga0213876_10007541 3300021384 Bacteria 5909
73 Ga0207688_10016463 3300025901 Bacteria 4010
74 Ga0207688_10057970 3300025901 Bacteria 2178
75 Ga0207645_10105466 3300025907 Bacteria 1821
76 Ga0207707_10160281 3300025912 Bacteria 1967
77 Ga0207695_10095449 3300025913 Bacteria 2977
78 Ga0207693_10002931 3300025915 Bacteria 14766
79 Ga0207649_10015604 3300025920 Bacteria 4267
80 Ga0207687_10074956 3300025927 Bacteria 2427
81 Ga0207690_10005445 3300025932 Bacteria 7501
82 Ga0207706_10002857 3300025933 Bacteria 16767
83 Ga0207709_10051350 3300025935 Bacteria 2527
84 Ga0207679_10099885 3300025945 Bacteria 2267
85 Ga0207639_10017863 3300026041 Bacteria 5031
86 Ga0207708_10093461 3300026075 Bacteria 2321
87 Ga0207702_10146006 3300026078 Bacteria 2147
88 Ga0207675_100012515 3300026118 Bacteria 7925
89 Ga0207698_10014840 3300026142 Bacteria 5193
90 Ga0207428_10010901 3300027907 Bacteria 8090
91 Ga0307405_10043970 3300031731 Bacteria 2729
92 Ga0307405_10182245 3300031731 Bacteria 1509
93 Ga0307410_10046096 3300031852 Bacteria 2907
94 Ga0307406_10006803 3300031901 Bacteria 6326
95 Ga0307406_10042844 3300031901 Bacteria 2828
96 Ga0307406_10058895 3300031901 Bacteria 2470
97 Ga0307407_10046894 3300031903 Bacteria 2448
98 Ga0307409_100012195 3300031995 Bacteria 5465
99 Ga0307409_100025734 3300031995 Bacteria 4135
100 Ga0307416_100002794 3300032002 Bacteria 10139
101 Ga0307416_100016182 3300032002 Bacteria 5175
102 Ga0307415_100025728 3300032126 Bacteria 3700
103 Ga0307415_100119121 3300032126 Bacteria 1975
104 Ga0395900_0019873 3300037418 Bacteria 6847
105 Ga0395900_0096233 3300037418 Bacteria 3042
106 Ga0395898_0016886 3300037466 Bacteria 7453
107 Ga0395898_0315301 3300037466 Unclassified 1492
108 Ga0395898_0326527 3300037466 Bacteria 1463
109 Ga0395905_0007485 3300037471 Bacteria 10862
110 Ga0436364_1229598 3300037853 Bacteria 2866
111 Ga0395901_0014996 3300038443 Bacteria 7877
112 Ga0395901_0018206 3300038443 Bacteria 7171
113 Ga0395901_0057560 3300038443 Bacteria 4043
114 Ga0395901_0229029 3300038443 Bacteria 1941
115 Ga0436365_0645521 3300039437 Bacteria 30415
116 Ga0436362_0941183 3300039453 Bacteria 3027
117 Ga0466957_0055185 3300044842 Bacteria 2428
118 Ga0466960_0000510 3300044901 Bacteria 13326
119 Ga0466967_0011872 3300045976 Bacteria 6629
120 Ga0466967_0022335 3300045976 Bacteria 5159
121 Ga0466967_0028495 3300045976 Bacteria 4661
122 Ga0466967_0028992 3300045976 Bacteria 4628
123 Ga0466967_0112961 3300045976 Bacteria 2498
124 Ga0466967_0166229 3300045976 Bacteria 2073
125 Ga0466967_0345896 3300045976 Bacteria 1438
126 Ga0495650_0000070 3300046471 Bacteria 258497
127 Ga0495628_0002265 3300046516 Bacteria 17396
128 Ga0495630_0011828 3300046517 Bacteria 6323
129 Ga0495652_0000060 3300046529 Bacteria 111891
130 Ga0495588_0060291 3300046674 Bacteria 1964
131 Ga0495657_0076937 3300046675 Bacteria 2166
132 Ga0495589_0029178 3300046794 Bacteria 2781
133 Ga0495674_0000027 3300047319 Bacteria 132744
134 Ga0495672_0016315 3300047320 Bacteria 5010
135 Ga0495684_0259642 3300047471 Bacteria 1261
136 Ga0495602_0006000 3300048088 Bacteria 12757
137 Ga0496100_0167250 3300048903 Bacteria 1581
138 Ga0496101_0019784 3300048904 Bacteria 4602
139 Ga0496102_0028807 3300048905 Bacteria 4964
140 Ga0496103_0044255 3300048906 Bacteria 2743
141 Ga0496106_0008800 3300048909 Bacteria 7459
142 Ga0496106_0186744 3300048909 Bacteria 1647
143 Ga0496107_0003522 3300048910 Bacteria 10476
144 Ga0496109_0002847 3300048912 Bacteria 14468
145 Ga0496109_0072543 3300048912 Bacteria 3163
146 Ga0496110_0005662 3300048913 Bacteria 9804
147 Ga0496111_0019261 3300048914 Bacteria 4737
148 Ga0496112_0106794 3300048915 Bacteria 2769
149 Ga0496112_0283483 3300048915 Bacteria 1603
150 Ga0496113_0128745 3300048916 Bacteria 1984
151 Ga0496114_0002667 3300048917 Bacteria 13622
152 Ga0496119_0081061 3300048922 Bacteria 1870
153 Ga0496121_0016033 3300048924 Bacteria 7768
154 Ga0501032_0051271 3300049569 Bacteria 2782
155 Ga0501033_0045209 3300049570 Bacteria 3277
156 Ga0501034_0009630 3300049571 Bacteria 10107
157 Ga0501036_0017997 3300049572 Bacteria 5915
158 Ga0501037_0004598 3300049573 Bacteria 10031
159 Ga0501038_0040988 3300049574 Bacteria 4040
160 Ga0501039_0087899 3300049575 Bacteria 2421
161 Ga0501040_0009685 3300049576 Bacteria 6291
162 Ga0501046_0031708 3300049580 Bacteria 4282
163 Ga0501068_0023436 3300049584 Bacteria 3618
164 Ga0501068_0029324 3300049584 Bacteria 3257
165 Ga0501069_0036746 3300049585 Bacteria 2702
166 Ga0501070_0072390 3300049586 Bacteria 2853
167 Ga0501071_0019233 3300049587 Bacteria 4738
168 Ga0501072_0003984 3300049588 Bacteria 11173
169 Ga0501073_0011718 3300049589 Bacteria 6401
170 Ga0501074_0012799 3300049590 Bacteria 6100
171 Ga0501074_0041893 3300049590 Bacteria 3313
172 Ga0501075_0014562 3300049591 Bacteria 5638
173 Ga0501077_0052814 3300049593 Bacteria 2580
174 Ga0501079_0018405 3300049741 Bacteria 5339
175 Ga0501081_0009987 3300049743 Bacteria 6190
176 Ga0501081_0028058 3300049743 Bacteria 3797
177 Ga0501081_0160912 3300049743 Bacteria 1618
178 Ga0501083_0021634 3300049744 Bacteria 4466
179 Ga0501035_0010006 3300049822 Bacteria 8799
180 Ga0501045_0174282 3300049824 Bacteria 1602
181 nmdc:mga0yw44_42924_c1 3300050492 Bacteria 2699
182 nmdc:mga05p37_20460_c1 3300050507 Bacteria 8005
183 nmdc:mga05p37_229448_c1 3300050507 Bacteria 2238
184 nmdc:mga09592_77845_c1 3300050508 Bacteria 2821
185 nmdc:mga0qj67_56557_c1 3300050509 Bacteria 3109
186 nmdc:mga06r32_10746_c1 3300050510 Bacteria 8245
187 nmdc:mga06r32_206187_c1 3300050510 Bacteria 1954
188 nmdc:mga08y16_123214_c1 3300050511 Bacteria 2697
189 nmdc:mga08y16_14692_c1 3300050511 Bacteria 8231
190 nmdc:mga0n895_23944_c1 3300050512 Bacteria 5747
191 nmdc:mga0rr50_31273_c1 3300050513 Bacteria 3778
192 Ga0495619_0000785 3300053085 Bacteria 20772
193 Ga0495619_0002211 3300053085 Bacteria 12886
194 Ga0500616_0018393 3300053153 Bacteria 3951
195 Ga0501084_0042586 3300054114 Bacteria 3798
196 Ga0501084_0062890 3300054114 Bacteria 3107
197 Ga0501084_0073508 3300054114 Bacteria 2863
198 Ga0501084_0097499 3300054114 Unclassified 2468
199 Ga0501082_0033181 3300060353 Bacteria 4453
200 Ga0501082_0044202 3300060353 Bacteria 3842
201 Ga0530510_0008318 3300061734 Bacteria 7236

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031995 Ga0307409_100025734 Ga0307409_1000257343 368
2 3300047471 Ga0495684_0259642 Ga0495684_0259642_56_1240 372
3 3300048909 Ga0496106_0186744 Ga0496106_0186744_129_1379 395
4 3300049743 Ga0501081_0009987 Ga0501081_0009987_4565_5812 399
5 3300005328 Ga0070676_10100137 Ga0070676_101001372 400
6 3300005347 Ga0070668_100007028 Ga0070668_1000070286 400
7 3300005441 Ga0070700_100056942 Ga0070700_1000569423 400
8 3300005457 Ga0070662_100004057 Ga0070662_1000040576 400
9 3300005719 Ga0068861_100055658 Ga0068861_1000556582 400
10 3300009098 Ga0105245_10002400 Ga0105245_100024006 400
11 3300009147 Ga0114129_10092408 Ga0114129_100924084 400
12 3300013306 Ga0163162_10034967 Ga0163162_100349675 400
13 3300025901 Ga0207688_10057970 Ga0207688_100579704 400
14 3300025907 Ga0207645_10105466 Ga0207645_101054662 400
15 3300025933 Ga0207706_10002857 Ga0207706_1000285712 400
16 3300026075 Ga0207708_10093461 Ga0207708_100934614 400
17 3300026118 Ga0207675_100012515 Ga0207675_1000125155 400
18 3300006847 Ga0075431_100098170 Ga0075431_1000981703 407
19 3300009094 Ga0111539_10003410 Ga0111539_1000341017 407
20 3300050510 nmdc:mga06r32_10746_c1 nmdc:mga06r32_10746_c1_2521_3807 407
21 3300050512 nmdc:mga0n895_23944_c1 nmdc:mga0n895_23944_c1_23_1309 407
22 3300050513 nmdc:mga0rr50_31273_c1 nmdc:mga0rr50_31273_c1_786_2072 407
23 3300047320 Ga0495672_0016315 Ga0495672_0016315_1068_2435 408
24 3300046517 Ga0495630_0011828 Ga0495630_0011828_4711_6015 412
25 3300046675 Ga0495657_0076937 Ga0495657_0076937_131_1435 412
26 3300053085 Ga0495619_0000785 Ga0495619_0000785_17910_19214 412
27 3300053085 Ga0495619_0002211 Ga0495619_0002211_1196_2500 412
28 3300038443 Ga0395901_0014996 Ga0395901_0014996_6031_7407 413
29 3300045976 Ga0466967_0011872 Ga0466967_0011872_1370_2737 414
30 3300049743 Ga0501081_0160912 Ga0501081_0160912_226_1599 415
31 3300054114 Ga0501084_0042586 Ga0501084_0042586_1375_2748 415
32 3300049585 Ga0501069_0036746 Ga0501069_0036746_820_2142 417
33 3300031731 Ga0307405_10182245 Ga0307405_101822452 418
34 3300031852 Ga0307410_10046096 Ga0307410_100460962 418
35 3300031901 Ga0307406_10058895 Ga0307406_100588953 418
36 3300031903 Ga0307407_10046894 Ga0307407_100468942 418
37 3300031995 Ga0307409_100012195 Ga0307409_1000121955 418
38 3300032002 Ga0307416_100016182 Ga0307416_1000161823 418
39 3300046674 Ga0495588_0060291 Ga0495588_0060291_167_1642 418
40 3300014968 Ga0157379_10058669 Ga0157379_100586691 420
41 3300045976 Ga0466967_0166229 Ga0466967_0166229_170_1522 421
42 3300049586 Ga0501070_0072390 Ga0501070_0072390_1133_2491 421
43 3300005439 Ga0070711_100036284 Ga0070711_1000362843 422
44 3300005441 Ga0070700_100023617 Ga0070700_1000236172 422
45 3300005549 Ga0070704_100011003 Ga0070704_1000110035 422
46 3300005981 Ga0081538_10000698 Ga0081538_1000069835 422
47 3300006038 Ga0075365_10000210 Ga0075365_1000021010 422
48 3300006038 Ga0075365_10000339 Ga0075365_1000033912 422
49 3300006038 Ga0075365_10106609 Ga0075365_101066092 422
50 3300006175 Ga0070712_100023424 Ga0070712_1000234242 422
51 3300006847 Ga0075431_100127392 Ga0075431_1001273922 422
52 3300009098 Ga0105245_10000955 Ga0105245_100009555 422
53 3300009148 Ga0105243_10107013 Ga0105243_101070132 422
54 3300009553 Ga0105249_10146266 Ga0105249_101462662 422
55 3300013308 Ga0157375_10084307 Ga0157375_100843073 422
56 3300025901 Ga0207688_10016463 Ga0207688_100164632 422
57 3300025915 Ga0207693_10002931 Ga0207693_1000293113 422
58 3300025927 Ga0207687_10074956 Ga0207687_100749562 422
59 3300037418 Ga0395900_0019873 Ga0395900_0019873_477_1817 422
60 3300037466 Ga0395898_0016886 Ga0395898_0016886_2423_3763 422
61 3300037466 Ga0395898_0315301 Ga0395898_0315301_54_1394 422
62 3300037471 Ga0395905_0007485 Ga0395905_0007485_5627_6967 422
63 3300038443 Ga0395901_0018206 Ga0395901_0018206_2978_4318 422
64 3300038443 Ga0395901_0057560 Ga0395901_0057560_2349_3689 422
65 3300048904 Ga0496101_0019784 Ga0496101_0019784_649_1989 422
66 3300048905 Ga0496102_0028807 Ga0496102_0028807_2998_4338 422
67 3300048906 Ga0496103_0044255 Ga0496103_0044255_1098_2438 422
68 3300048909 Ga0496106_0008800 Ga0496106_0008800_3428_4768 422
69 3300048910 Ga0496107_0003522 Ga0496107_0003522_6744_8084 422
70 3300048913 Ga0496110_0005662 Ga0496110_0005662_5922_7262 422
71 3300048914 Ga0496111_0019261 Ga0496111_0019261_3345_4685 422
72 3300048915 Ga0496112_0283483 Ga0496112_0283483_54_1394 422
73 3300048916 Ga0496113_0128745 Ga0496113_0128745_210_1550 422
74 3300048917 Ga0496114_0002667 Ga0496114_0002667_6534_7874 422
75 3300049575 Ga0501039_0087899 Ga0501039_0087899_1042_2382 422
76 3300049576 Ga0501040_0009685 Ga0501040_0009685_4915_6255 422
77 3300049587 Ga0501071_0019233 Ga0501071_0019233_1741_3081 422
78 3300049588 Ga0501072_0003984 Ga0501072_0003984_6044_7384 422
79 3300049590 Ga0501074_0012799 Ga0501074_0012799_2540_3880 422
80 3300049591 Ga0501075_0014562 Ga0501075_0014562_40_1380 422
81 3300049593 Ga0501077_0052814 Ga0501077_0052814_974_2314 422
82 3300049741 Ga0501079_0018405 Ga0501079_0018405_2080_3420 422
83 3300049743 Ga0501081_0028058 Ga0501081_0028058_1792_3132 422
84 3300049824 Ga0501045_0174282 Ga0501045_0174282_181_1521 422
85 3300050492 nmdc:mga0yw44_42924_c1 nmdc:mga0yw44_42924_c1_234_1574 422
86 3300050511 nmdc:mga08y16_123214_c1 nmdc:mga08y16_123214_c1_223_1563 422
87 3300054114 Ga0501084_0062890 Ga0501084_0062890_273_1613 422
88 3300054114 Ga0501084_0097499 Ga0501084_0097499_792_2132 422
89 3300060353 Ga0501082_0033181 Ga0501082_0033181_2280_3620 422
90 3300061734 Ga0530510_0008318 Ga0530510_0008318_2222_3562 422
91 3300006852 Ga0075433_10136834 Ga0075433_101368342 423
92 3300037418 Ga0395900_0096233 Ga0395900_0096233_1293_2633 423
93 3300037466 Ga0395898_0326527 Ga0395898_0326527_83_1423 423
94 3300045976 Ga0466967_0022335 Ga0466967_0022335_434_1762 423
95 3300049571 Ga0501034_0009630 Ga0501034_0009630_1693_3015 423
96 3300049584 Ga0501068_0023436 Ga0501068_0023436_1116_2456 423
97 3300005981 Ga0081538_10007217 Ga0081538_100072175 424
98 3300009098 Ga0105245_10226713 Ga0105245_102267132 424
99 3300032126 Ga0307415_100025728 Ga0307415_1000257282 424
100 3300046516 Ga0495628_0002265 Ga0495628_0002265_7578_8936 424
101 3300046529 Ga0495652_0000060 Ga0495652_0000060_21508_22860 424
102 3300048088 Ga0495602_0006000 Ga0495602_0006000_2414_3772 424
103 3300006847 Ga0075431_100061325 Ga0075431_1000613253 425
104 3300046794 Ga0495589_0029178 Ga0495589_0029178_154_1509 425
105 3300047319 Ga0495674_0000027 Ga0495674_0000027_88512_89876 425
106 3300050510 nmdc:mga06r32_206187_c1 nmdc:mga06r32_206187_c1_241_1599 425
107 3300054114 Ga0501084_0073508 Ga0501084_0073508_22_1350 425
108 3300049569 Ga0501032_0051271 Ga0501032_0051271_380_1714 427
109 3300049570 Ga0501033_0045209 Ga0501033_0045209_1629_2963 427
110 3300049572 Ga0501036_0017997 Ga0501036_0017997_3302_4636 427
111 3300049573 Ga0501037_0004598 Ga0501037_0004598_2753_4087 427
112 3300049574 Ga0501038_0040988 Ga0501038_0040988_1905_3239 427
113 3300049580 Ga0501046_0031708 Ga0501046_0031708_802_2136 427
114 3300049584 Ga0501068_0029324 Ga0501068_0029324_313_1647 427
115 3300049589 Ga0501073_0011718 Ga0501073_0011718_2268_3602 427
116 3300049590 Ga0501074_0041893 Ga0501074_0041893_1630_2964 427
117 3300049744 Ga0501083_0021634 Ga0501083_0021634_2751_4085 427
118 3300049822 Ga0501035_0010006 Ga0501035_0010006_1951_3285 427
119 3300060353 Ga0501082_0044202 Ga0501082_0044202_639_1973 427
120 3300009094 Ga0111539_10247028 Ga0111539_102470282 428
121 3300006048 Ga0075363_100036337 Ga0075363_1000363372 430
122 3300005983 Ga0081540_1000827 Ga0081540_100082712 431
123 3300005344 Ga0070661_100009695 Ga0070661_1000096956 433
124 3300005366 Ga0070659_100003139 Ga0070659_10000313912 433
125 3300025932 Ga0207690_10005445 Ga0207690_100054456 433
126 3300026078 Ga0207702_10146006 Ga0207702_101460062 433
127 3300005981 Ga0081538_10000170 Ga0081538_1000017022 434
128 3300005981 Ga0081538_10001947 Ga0081538_100019476 434
129 3300031901 Ga0307406_10042844 Ga0307406_100428443 434
130 3300005336 Ga0070680_100006927 Ga0070680_1000069276 435
131 3300005458 Ga0070681_10217023 Ga0070681_102170231 435
132 3300005564 Ga0070664_100018203 Ga0070664_1000182032 435
133 3300005616 Ga0068852_100002560 Ga0068852_10000256012 435
134 3300005937 Ga0081455_10074513 Ga0081455_100745133 435
135 3300005981 Ga0081538_10005229 Ga0081538_100052299 435
136 3300009545 Ga0105237_10131840 Ga0105237_101318402 435
137 3300009551 Ga0105238_10018930 Ga0105238_100189302 435
138 3300013104 Ga0157370_10009936 Ga0157370_100099366 435
139 3300013307 Ga0157372_10040551 Ga0157372_100405516 435
140 3300025912 Ga0207707_10160281 Ga0207707_101602811 435
141 3300025913 Ga0207695_10095449 Ga0207695_100954492 435
142 3300025920 Ga0207649_10015604 Ga0207649_100156042 435
143 3300025945 Ga0207679_10099885 Ga0207679_100998852 435
144 3300026041 Ga0207639_10017863 Ga0207639_100178632 435
145 3300026142 Ga0207698_10014840 Ga0207698_100148406 435
146 3300032126 Ga0307415_100119121 Ga0307415_1001191211 435
147 3300045976 Ga0466967_0345896 Ga0466967_0345896_18_1394 435
148 3300046471 Ga0495650_0000070 Ga0495650_0000070_61461_62876 435
149 3300005535 Ga0070684_100011615 Ga0070684_1000116155 436
150 3300005981 Ga0081538_10001989 Ga0081538_1000198910 436
151 3300005981 Ga0081538_10014209 Ga0081538_100142093 436
152 3300005983 Ga0081540_1037157 Ga0081540_10371571 436
153 3300005985 Ga0081539_10003511 Ga0081539_1000351114 436
154 3300009094 Ga0111539_10009652 Ga0111539_100096522 436
155 3300009147 Ga0114129_10019530 Ga0114129_100195305 436
156 3300027907 Ga0207428_10010901 Ga0207428_100109018 436
157 3300038443 Ga0395901_0229029 Ga0395901_0229029_259_1638 436
158 3300045976 Ga0466967_0112961 Ga0466967_0112961_1010_2362 436
159 3300050507 nmdc:mga05p37_20460_c1 nmdc:mga05p37_20460_c1_598_1950 436
160 3300050511 nmdc:mga08y16_14692_c1 nmdc:mga08y16_14692_c1_5564_6916 436
161 3300005339 Ga0070660_100004930 Ga0070660_1000049304 437
162 3300005530 Ga0070679_100005918 Ga0070679_10000591810 437
163 3300005937 Ga0081455_10028342 Ga0081455_100283427 437
164 3300005981 Ga0081538_10001807 Ga0081538_100018076 437
165 3300005981 Ga0081538_10010340 Ga0081538_100103409 437
166 3300005981 Ga0081538_10039302 Ga0081538_100393023 437
167 3300006844 Ga0075428_100015011 Ga0075428_1000150119 437
168 3300006844 Ga0075428_100067903 Ga0075428_1000679034 437
169 3300006880 Ga0075429_100015041 Ga0075429_1000150417 437
170 3300009147 Ga0114129_10005988 Ga0114129_1000598816 437
171 3300021384 Ga0213876_10007541 Ga0213876_100075412 437
172 3300031901 Ga0307406_10006803 Ga0307406_100068038 437
173 3300032002 Ga0307416_100002794 Ga0307416_1000027948 437
174 3300039437 Ga0436365_0645521 Ga0436365_0645521_2037_3404 437
175 3300039453 Ga0436362_0941183 Ga0436362_0941183_606_1982 437
176 3300045976 Ga0466967_0028495 Ga0466967_0028495_1451_2836 437
177 3300045976 Ga0466967_0028992 Ga0466967_0028992_931_2286 437
178 3300048912 Ga0496109_0072543 Ga0496109_0072543_1136_2506 437
179 3300050507 nmdc:mga05p37_229448_c1 nmdc:mga05p37_229448_c1_318_1688 437
180 3300050508 nmdc:mga09592_77845_c1 nmdc:mga09592_77845_c1_1063_2433 437
181 3300050509 nmdc:mga0qj67_56557_c1 nmdc:mga0qj67_56557_c1_1201_2571 437
182 3300005347 Ga0070668_100021473 Ga0070668_1000214734 438
183 3300005356 Ga0070674_100023861 Ga0070674_1000238614 438
184 3300005981 Ga0081538_10001059 Ga0081538_1000105919 438
185 3300025935 Ga0207709_10051350 Ga0207709_100513502 438
186 3300037853 Ga0436364_1229598 Ga0436364_1229598_1469_2839 438
187 3300053153 Ga0500616_0018393 Ga0500616_0018393_300_1724 438
188 3300031731 Ga0307405_10043970 Ga0307405_100439704 439
189 3300044842 Ga0466957_0055185 Ga0466957_0055185_651_2039 439
190 3300044901 Ga0466960_0000510 Ga0466960_0000510_7752_9131 439
191 3300048903 Ga0496100_0167250 Ga0496100_0167250_102_1466 439
192 3300005981 Ga0081538_10092487 Ga0081538_100924871 440
193 3300014968 Ga0157379_10002657 Ga0157379_1000265714 442
194 3300048922 Ga0496119_0081061 Ga0496119_0081061_240_1625 442
195 3300048924 Ga0496121_0016033 Ga0496121_0016033_6116_7507 442
196 3300048915 Ga0496112_0106794 Ga0496112_0106794_1150_2550 444
197 3300003203 JGI25406J46586_10039547 JGI25406J46586_100395472 446
198 3300005548 Ga0070665_100006384 Ga0070665_1000063843 446
199 3300005985 Ga0081539_10003432 Ga0081539_1000343217 446
200 3300005985 Ga0081539_10035929 Ga0081539_100359292 446
201 3300048912 Ga0496109_0002847 Ga0496109_0002847_4077_5651 446

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01938

TRAM

TRAM domain

55

113

0.96

PF05958

tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

414

503

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.935 17 445
5xj1-assembly1.cif.gz_A crystal structure of sprlmcd 0.9163 17 442
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.9007 17 445
5xj1-assembly1.cif.gz_A crystal structure of sprlmcd 0.8777 17 442
2vs1-assembly1.cif.gz_A the crystal structure of pyrococcus abyssi trna (uracil-54, c5)- methyltransferase in complex with s-adenosyl-l-homocysteine 0.8688 25 441
ID Description Score Start End Superfamily
af_Q2FWZ3_2_80_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9367 16 89 2.40.50.140
af_K7M3P6_39_121_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9156 14 89 2.40.50.140
af_Q96GJ1_309_485_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9138 277 413 3.40.50.150
af_O07191_4_80_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9057 17 89 2.40.50.140
af_Q4DAH6_383_557_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9023 296 440 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A538FA96-F1-model_v4 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD (EC 2.1.1.190) 0.9821 213 445 GO:0070041
GO:0070475
AF-A0A6J7GYZ1-F1-model_v4 Unannotated protein 0.9754 8 445 GO:0070041
GO:0070475
AF-A0A6J7H8F2-F1-model_v4 Unannotated protein 0.9735 9 443 GO:0006396
GO:0008173
GO:0008757
GO:0009451
GO:0032259
AF-W1XVT9-F1-model_v4 23S rRNA (Uracil-5-)-methyltransferase 0.969 367 445 GO:0070041
GO:0070475
AF-A0A7X8Q2H7-F1-model_v4 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD (EC 2.1.1.190) 0.9653 245 443 GO:0070041
GO:0070475

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pLDDT pTM Quality
90.53 0.87 High
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Predicted Structure (AlphaFold2)

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