F308541

General Info

Members Datasets Scaffolds Average Seq Length
201 117 402 849

Family's Representative Sequence

Representative Sequence 3300014969|Ga0157376_10002117|Ga0157376_1000211710
Length 922
Sequence MSFMLTFINILLQWYIWLPIVLILAFMTWRNYQRVDIVKDIETVLLTLEIPRANDKSELAAEQMFASLHGILRDAKELRANNGYQEHLSFEIASVGGSIQFYVWTPKSLQNFVEGQIYAQYPQVQIHAAEEDYTSHERHHSVTYTTEITLTDKEFLPIKTFQSFEVDPLAGITGTLAKLENTDEEIWIQMLVRPVEDDWHKAADTWTRSVKSGGFNLFGGNGGGTAKYFAGLFEVLWAPPEQGKSGAAAEISERNKTRIAEAEKKATKLGYQVKIRIAYLGENMSDAKLRMQGIVGTFKQFNSTNLNGFRSSNDSFAKEALQKYRMRLFADRGYLMNIEEVASVFHLPHTNVETPNIVWANTKTAEPPAKLPVLSGDPAHDENISAFGMTNFRGVNHQFGMMRYDRSRHVYIIGQTGAGKSGLLELFALSDIFHGQGYAIIDPHGDFAINNMRFIPGSRLQDVVYFNPADTQYPLGFNPLEVTNPAQKTNVSSEVIGVLKRMFGESWGPRLEYILRYTILALLDRPETTMLDITRMLTDKKFRKDTLSYCTDTVVLQFWNIEFASWTDKFQAEAIAPVLNKVGAFTANPVIRNIIGQPKSTFNIRQIMDEGKILIVNLSKGLIGEDNASILGSFLVTKIQLAAMSRSDIPDIKDRRPFYLYVDEFQNFATDSFATILSEARKYGLNLTVANQYISQMNETVRDAVFGNVGTMITFRVSADDSPILAKQFEPQFEPNDLLQMHNRNFIINMVINGEKSPAFSAKTLNLPPPQDDNTGRIIQWTREYYSRNREDIEREISDRILPPENLTVKRPGPAYTAPKSPEQREQERLEKEAAMLEQGKTWTISNVTPDEVNTALQIAKEEGSGTTEITEVIQGTHKAPSEPIGSSANAVKSEEVASVAPKVTNESQSKEPSDTGVLSIR

Samples

Sample ID Description Type Environment
1 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
6 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
12 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
13 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
40 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
41 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
74 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
75 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
76 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
77 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
78 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
79 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
80 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
86 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
87 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
88 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
89 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
92 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
93 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
102 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
103 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
104 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
105 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
106 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
107 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
108 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
109 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
110 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
111 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
112 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
113 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
114 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
115 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
116 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
117 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.42
Nodule 0
Rhizoplane 0.5
Rhizosphere 81.59
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157376_10002117 3300014969 Bacteria 13363
2 MBSR1b_contig_12492027 2162886012 Bacteria 3256
3 JGI24740J21852_10003545 3300001979 Bacteria 6839
4 JGI24739J22299_10003313 3300001989 Bacteria 6141
5 JGI24737J22298_10004093 3300001990 Bacteria 5095
6 JGI24735J21928_10000026 3300002067 Bacteria 88519
7 rootH2_10000659 3300003320 Bacteria 146718
8 rootH1_10023936 3300003323 Bacteria 45920
9 Ga0065715_10002508 3300005293 Bacteria 5689
10 Ga0070658_10000035 3300005327 Bacteria 145828
11 Ga0070658_10000248 3300005327 Bacteria 47854
12 Ga0070658_10000867 3300005327 Bacteria 25848
13 Ga0070658_10001073 3300005327 Bacteria 23367
14 Ga0070658_10027988 3300005327 Bacteria 4524
15 Ga0070683_100009851 3300005329 Bacteria 8190
16 Ga0070670_100015766 3300005331 Bacteria 6489
17 Ga0070680_100002885 3300005336 Bacteria 12782
18 Ga0070660_100000121 3300005339 Bacteria 49401
19 Ga0070660_100000599 3300005339 Bacteria 24067
20 Ga0070660_100001136 3300005339 Bacteria 17956
21 Ga0070660_100003267 3300005339 Bacteria 11129
22 Ga0070691_10004321 3300005341 Bacteria 6456
23 Ga0070671_100012383 3300005355 Bacteria 6869
24 Ga0070659_100001149 3300005366 Bacteria 19316
25 Ga0070679_100005792 3300005530 Bacteria 11467
26 Ga0070679_100009657 3300005530 Bacteria 9127
27 Ga0070679_100025845 3300005530 Bacteria 5761
28 Ga0070679_100036460 3300005530 Bacteria 4880
29 Ga0070684_100023284 3300005535 Bacteria 5177
30 Ga0068853_100008477 3300005539 Bacteria 8262
31 Ga0068855_100000002 3300005563 Bacteria 616881
32 Ga0068855_100000050 3300005563 Bacteria 143762
33 Ga0068855_100002628 3300005563 Bacteria 22136
34 Ga0068855_100006957 3300005563 Bacteria 13727
35 Ga0070664_100000793 3300005564 Bacteria 24324
36 Ga0068857_100000001 3300005577 Bacteria 254081
37 Ga0068857_100002878 3300005577 Bacteria 14154
38 Ga0068857_100003580 3300005577 Bacteria 12999
39 Ga0068856_100000151 3300005614 Bacteria 70749
40 Ga0068856_100001533 3300005614 Bacteria 24205
41 Ga0068852_100000001 3300005616 Bacteria 716526
42 Ga0068852_100000044 3300005616 Bacteria 89653
43 Ga0068860_100057130 3300005843 Bacteria 3709
44 Ga0081455_10000006 3300005937 Bacteria 323066
45 Ga0075365_10000002 3300006038 Bacteria 226306
46 Ga0075365_10000006 3300006038 Bacteria 123233
47 Ga0075365_10000567 3300006038 Bacteria 14349
48 Ga0075368_10000338 3300006042 Bacteria 13718
49 Ga0075364_10000344 3300006051 Bacteria 23111
50 Ga0075364_10000734 3300006051 Bacteria 17177
51 Ga0097621_100000001 3300006237 Bacteria 632268
52 Ga0068871_100000005 3300006358 Bacteria 123210
53 Ga0075428_100009983 3300006844 Bacteria 10550
54 Ga0068865_100000557 3300006881 Bacteria 20737
55 Ga0105240_10000004 3300009093 Bacteria 708156
56 Ga0105240_10000118 3300009093 Bacteria 163934
57 Ga0105240_10001060 3300009093 Bacteria 48667
58 Ga0105240_10001793 3300009093 Bacteria 36153
59 Ga0105245_10004508 3300009098 Bacteria 12307
60 Ga0105241_10008853 3300009174 Bacteria 7399
61 Ga0105237_10000001 3300009545 Bacteria 1009213
62 Ga0105237_10000002 3300009545 Bacteria 702357
63 Ga0105032_100003 3300009979 Bacteria 186985
64 Ga0105032_100004 3300009979 Bacteria 172013
65 Ga0105028_100016 3300009993 Bacteria 23824
66 Ga0105246_10001671 3300011119 Bacteria 13217
67 Ga0105246_10001884 3300011119 Bacteria 12627
68 Ga0105246_10015114 3300011119 Bacteria 4867
69 Ga0157373_10004019 3300013100 Bacteria 11089
70 Ga0157373_10034983 3300013100 Bacteria 3608
71 Ga0157371_10002470 3300013102 Bacteria 17603
72 Ga0157370_10001351 3300013104 Bacteria 30420
73 Ga0157370_10006221 3300013104 Bacteria 13225
74 Ga0157370_10045270 3300013104 Bacteria 4222
75 Ga0157369_10000024 3300013105 Bacteria 225851
76 Ga0157369_10000121 3300013105 Bacteria 111030
77 Ga0157369_10003363 3300013105 Bacteria 18990
78 Ga0157369_10003695 3300013105 Bacteria 18183
79 Ga0157369_10007393 3300013105 Bacteria 12645
80 Ga0157374_10008765 3300013296 Bacteria 8654
81 Ga0157374_10010017 3300013296 Bacteria 8135
82 Ga0157372_10000002 3300013307 Bacteria 687862
83 Ga0157372_10000008 3300013307 Bacteria 305449
84 Ga0157372_10000212 3300013307 Bacteria 65077
85 Ga0157377_10000944 3300014745 Bacteria 12162
86 Ga0157379_10010238 3300014968 Bacteria 8165
87 Ga0157376_10007212 3300014969 Bacteria 7908
88 Ga0207647_10001364 3300025904 Bacteria 18763
89 Ga0207705_10000010 3300025909 Bacteria 518023
90 Ga0207705_10000011 3300025909 Bacteria 517768
91 Ga0207705_10001022 3300025909 Bacteria 22704
92 Ga0207705_10004070 3300025909 Bacteria 11096
93 Ga0207705_10020050 3300025909 Bacteria 4781
94 Ga0207695_10000009 3300025913 Bacteria 1034276
95 Ga0207695_10000801 3300025913 Bacteria 58717
96 Ga0207695_10002588 3300025913 Bacteria 26536
97 Ga0207695_10012021 3300025913 Bacteria 10414
98 Ga0207671_10000003 3300025914 Bacteria 1065461
99 Ga0207671_10000008 3300025914 Bacteria 798229
100 Ga0207660_10002649 3300025917 Bacteria 11741
101 Ga0207657_10000588 3300025919 Bacteria 38480
102 Ga0207657_10000772 3300025919 Bacteria 33957
103 Ga0207657_10001171 3300025919 Bacteria 27817
104 Ga0207657_10003432 3300025919 Bacteria 16904
105 Ga0207657_10003871 3300025919 Bacteria 15887
106 Ga0207652_10002980 3300025921 Bacteria 14143
107 Ga0207652_10066390 3300025921 Bacteria 3126
108 Ga0207687_10007904 3300025927 Bacteria 6968
109 Ga0207690_10001048 3300025932 Bacteria 17676
110 Ga0207706_10000053 3300025933 Bacteria 114286
111 Ga0207706_10068562 3300025933 Bacteria 3121
112 Ga0207704_10000505 3300025938 Bacteria 17408
113 Ga0207661_10017926 3300025944 Bacteria 5251
114 Ga0207679_10000125 3300025945 Bacteria 62810
115 Ga0207667_10000005 3300025949 Bacteria 715503
116 Ga0207667_10000096 3300025949 Bacteria 143776
117 Ga0207667_10003480 3300025949 Bacteria 19440
118 Ga0207667_10013077 3300025949 Bacteria 9526
119 Ga0207667_10014336 3300025949 Bacteria 9041
120 Ga0207640_10007303 3300025981 Bacteria 6098
121 Ga0207639_10009356 3300026041 Bacteria 6755
122 Ga0207702_10000100 3300026078 Bacteria 99927
123 Ga0207702_10000112 3300026078 Bacteria 94838
124 Ga0207674_10000015 3300026116 Bacteria 183445
125 Ga0207674_10001060 3300026116 Bacteria 35745
126 Ga0207674_10006512 3300026116 Bacteria 13734
127 Ga0207698_10000022 3300026142 Bacteria 131985
128 Ga0207698_10000197 3300026142 Bacteria 37794
129 Ga0209974_10001478 3300027876 Bacteria 8536
130 Ga0268264_10040637 3300028381 Bacteria 3843
131 Ga0265334_10000013 3300028573 Bacteria 155968
132 Ga0265338_10000060 3300028800 Bacteria 197991
133 Ga0265338_10001575 3300028800 Bacteria 36775
134 Ga0265338_10002379 3300028800 Bacteria 28345
135 Ga0265338_10002669 3300028800 Bacteria 26217
136 Ga0265338_10005304 3300028800 Bacteria 16877
137 Ga0265338_10043776 3300028800 Bacteria 4146
138 Ga0316179_1096093 3300030734 Bacteria 7784
139 Ga0316180_1105502 3300030736 Bacteria 11967
140 Ga0316183_1020160 3300030742 Bacteria 11197
141 Ga0316181_1063761 3300030744 Bacteria 284591
142 Ga0316182_1052783 3300030745 Bacteria 6536
143 Ga0316182_1206854 3300030745 Bacteria 24289
144 Ga0265340_10000644 3300031247 Bacteria 19581
145 Ga0307509_10008631 3300031507 Bacteria 12937
146 Ga0307516_10000003 3300031730 Bacteria 459377
147 Ga0307516_10008166 3300031730 Bacteria 11888
148 Ga0307406_10000002 3300031901 Bacteria 255753
149 Ga0307406_10001125 3300031901 Bacteria 14938
150 Ga0395900_0000001 3300037418 Bacteria 931146
151 Ga0395900_0002606 3300037418 Bacteria 19714
152 Ga0395898_0000002 3300037466 Bacteria 931013
153 Ga0395898_0052906 3300037466 Bacteria 3966
154 Ga0395901_0000072 3300038443 Bacteria 140394
155 Ga0395901_0056330 3300038443 Bacteria 4089
156 Ga0439445_0001009 3300042004 Bacteria 6002
157 Ga0439446_0000005 3300042156 Bacteria 101649
158 Ga0439446_0008375 3300042156 Bacteria 2743
159 Ga0439464_0000010 3300042439 Bacteria 27492
160 Ga0450918_000526 3300042531 Bacteria 8215
161 Ga0466965_0000108 3300044683 Bacteria 23504
162 Ga0453684_0000509 3300044712 Bacteria 151228
163 Ga0495638_0000173 3300046460 Bacteria 100531
164 Ga0495638_0000245 3300046460 Bacteria 74379
165 Ga0495660_0000035 3300046810 Bacteria 199140
166 Ga0496115_0000007 3300048918 Bacteria 244991
167 Ga0501034_0000333 3300049571 Bacteria 82475
168 Ga0501034_0002956 3300049571 Bacteria 19693
169 Ga0501034_0014009 3300049571 Bacteria 8255
170 Ga0501037_0000001 3300049573 Bacteria 753276
171 Ga0501038_0004960 3300049574 Bacteria 12361
172 Ga0501038_0006668 3300049574 Bacteria 10672
173 Ga0501047_0000310 3300049581 Bacteria 56101
174 Ga0501080_0000103 3300049742 Bacteria 58069
175 Ga0501035_0000033 3300049822 Bacteria 175087
176 Ga0501044_0030897 3300049823 Bacteria 5641
177 nmdc:mga00v17_400_c1 3300050491 Bacteria 24497
178 nmdc:mga00v17_407_c1 3300050491 Bacteria 24392
179 nmdc:mga00v17_93_c1 3300050491 Bacteria 52952
180 nmdc:mga0yw44_15_c2 3300050492 Bacteria 56226
181 nmdc:mga0yw44_1_c1 3300050492 Bacteria 702221
182 nmdc:mga0yw44_3_c1 3300050492 Bacteria 561857
183 nmdc:mga0yw44_584_c1 3300050492 Bacteria 13232
184 nmdc:mga0yw44_6_c1 3300050492 Bacteria 272478
185 nmdc:mga06z11_916_c1 3300050494 Bacteria 10742
186 Ga0500643_000034 3300053087 Bacteria 185705
187 Ga0500643_002194 3300053087 Bacteria 10318
188 Ga0500646_0000001 3300053090 Bacteria 273936
189 Ga0500583_0003860 3300053092 Bacteria 4799
190 Ga0500651_0000019 3300053093 Bacteria 141974
191 Ga0500651_0000290 3300053093 Bacteria 29139
192 Ga0500641_0000001 3300053096 Bacteria 1115973
193 Ga0500555_000005 3300053103 Bacteria 342334
194 Ga0500562_000001 3300053108 Bacteria 1178987
195 Ga0500569_000004 3300053109 Bacteria 100531
196 Ga0500594_0000307 3300053118 Bacteria 11022
197 Ga0500652_000001 3300053131 Bacteria 946868
198 Ga0500577_0000221 3300053142 Bacteria 15125
199 Ga0500588_0000035 3300053146 Bacteria 26476
200 Ga0500616_0000067 3300053153 Bacteria 236311
201 Ga0500620_002205 3300053155 Bacteria 3850
202 Ga0157376_10002117
203 MBSR1b_contig_12492027
204 JGI24740J21852_10003545
205 JGI24739J22299_10003313
206 JGI24737J22298_10004093
207 JGI24735J21928_10000026
208 rootH2_10000659
209 rootH1_10023936
210 Ga0065715_10002508
211 Ga0070658_10000035
212 Ga0070658_10000248
213 Ga0070658_10000867
214 Ga0070658_10001073
215 Ga0070658_10027988
216 Ga0070683_100009851
217 Ga0070670_100015766
218 Ga0070680_100002885
219 Ga0070660_100000121
220 Ga0070660_100000599
221 Ga0070660_100001136
222 Ga0070660_100003267
223 Ga0070691_10004321
224 Ga0070671_100012383
225 Ga0070659_100001149
226 Ga0070679_100005792
227 Ga0070679_100009657
228 Ga0070679_100025845
229 Ga0070679_100036460
230 Ga0070684_100023284
231 Ga0068853_100008477
232 Ga0068855_100000002
233 Ga0068855_100000050
234 Ga0068855_100002628
235 Ga0068855_100006957
236 Ga0070664_100000793
237 Ga0068857_100000001
238 Ga0068857_100002878
239 Ga0068857_100003580
240 Ga0068856_100000151
241 Ga0068856_100001533
242 Ga0068852_100000001
243 Ga0068852_100000044
244 Ga0068860_100057130
245 Ga0081455_10000006
246 Ga0075365_10000002
247 Ga0075365_10000006
248 Ga0075365_10000567
249 Ga0075368_10000338
250 Ga0075364_10000344
251 Ga0075364_10000734
252 Ga0097621_100000001
253 Ga0068871_100000005
254 Ga0075428_100009983
255 Ga0068865_100000557
256 Ga0105240_10000004
257 Ga0105240_10000118
258 Ga0105240_10001060
259 Ga0105240_10001793
260 Ga0105245_10004508
261 Ga0105241_10008853
262 Ga0105237_10000001
263 Ga0105237_10000002
264 Ga0105032_100003
265 Ga0105032_100004
266 Ga0105028_100016
267 Ga0105246_10001671
268 Ga0105246_10001884
269 Ga0105246_10015114
270 Ga0157373_10004019
271 Ga0157373_10034983
272 Ga0157371_10002470
273 Ga0157370_10001351
274 Ga0157370_10006221
275 Ga0157370_10045270
276 Ga0157369_10000024
277 Ga0157369_10000121
278 Ga0157369_10003363
279 Ga0157369_10003695
280 Ga0157369_10007393
281 Ga0157374_10008765
282 Ga0157374_10010017
283 Ga0157372_10000002
284 Ga0157372_10000008
285 Ga0157372_10000212
286 Ga0157377_10000944
287 Ga0157379_10010238
288 Ga0157376_10007212
289 Ga0207647_10001364
290 Ga0207705_10000010
291 Ga0207705_10000011
292 Ga0207705_10001022
293 Ga0207705_10004070
294 Ga0207705_10020050
295 Ga0207695_10000009
296 Ga0207695_10000801
297 Ga0207695_10002588
298 Ga0207695_10012021
299 Ga0207671_10000003
300 Ga0207671_10000008
301 Ga0207660_10002649
302 Ga0207657_10000588
303 Ga0207657_10000772
304 Ga0207657_10001171
305 Ga0207657_10003432
306 Ga0207657_10003871
307 Ga0207652_10002980
308 Ga0207652_10066390
309 Ga0207687_10007904
310 Ga0207690_10001048
311 Ga0207706_10000053
312 Ga0207706_10068562
313 Ga0207704_10000505
314 Ga0207661_10017926
315 Ga0207679_10000125
316 Ga0207667_10000005
317 Ga0207667_10000096
318 Ga0207667_10003480
319 Ga0207667_10013077
320 Ga0207667_10014336
321 Ga0207640_10007303
322 Ga0207639_10009356
323 Ga0207702_10000100
324 Ga0207702_10000112
325 Ga0207674_10000015
326 Ga0207674_10001060
327 Ga0207674_10006512
328 Ga0207698_10000022
329 Ga0207698_10000197
330 Ga0209974_10001478
331 Ga0268264_10040637
332 Ga0265334_10000013
333 Ga0265338_10000060
334 Ga0265338_10001575
335 Ga0265338_10002379
336 Ga0265338_10002669
337 Ga0265338_10005304
338 Ga0265338_10043776
339 Ga0316179_1096093
340 Ga0316180_1105502
341 Ga0316183_1020160
342 Ga0316181_1063761
343 Ga0316182_1052783
344 Ga0316182_1206854
345 Ga0265340_10000644
346 Ga0307509_10008631
347 Ga0307516_10000003
348 Ga0307516_10008166
349 Ga0307406_10000002
350 Ga0307406_10001125
351 Ga0395900_0000001
352 Ga0395900_0002606
353 Ga0395898_0000002
354 Ga0395898_0052906
355 Ga0395901_0000072
356 Ga0395901_0056330
357 Ga0439445_0001009
358 Ga0439446_0000005
359 Ga0439446_0008375
360 Ga0439464_0000010
361 Ga0450918_000526
362 Ga0466965_0000108
363 Ga0453684_0000509
364 Ga0495638_0000173
365 Ga0495638_0000245
366 Ga0495660_0000035
367 Ga0496115_0000007
368 Ga0501034_0000333
369 Ga0501034_0002956
370 Ga0501034_0014009
371 Ga0501037_0000001
372 Ga0501038_0004960
373 Ga0501038_0006668
374 Ga0501047_0000310
375 Ga0501080_0000103
376 Ga0501035_0000033
377 Ga0501044_0030897
378 nmdc:mga00v17_400_c1
379 nmdc:mga00v17_407_c1
380 nmdc:mga00v17_93_c1
381 nmdc:mga0yw44_15_c2
382 nmdc:mga0yw44_1_c1
383 nmdc:mga0yw44_3_c1
384 nmdc:mga0yw44_584_c1
385 nmdc:mga0yw44_6_c1
386 nmdc:mga06z11_916_c1
387 Ga0500643_000034
388 Ga0500643_002194
389 Ga0500646_0000001
390 Ga0500583_0003860
391 Ga0500651_0000019
392 Ga0500651_0000290
393 Ga0500641_0000001
394 Ga0500555_000005
395 Ga0500562_000001
396 Ga0500569_000004
397 Ga0500594_0000307
398 Ga0500652_000001
399 Ga0500577_0000221
400 Ga0500588_0000035
401 Ga0500616_0000067
402 Ga0500620_002205

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12696

TraG-D_C

TraM recognition site of TraD and TraG

657

726

0.88

PF10412

TrwB_AAD_bind

Type IV secretion-system coupling protein DNA-binding domain

398

735

0.77

PF01935

DUF87

Helicase HerA, central domain

404

639

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
1e9s-assembly1.cif.gz_F bacterial conjugative coupling protein trwbdeltan70. unbound monoclinic form. 0.7281 391 771
1gl6-assembly1.cif.gz_D plasmid coupling protein trwb in complex with the non-hydrolysable gtp analogue gdpnp 0.7233 397 769
4kfu-assembly2.cif.gz_B structure of the genome packaging ntpase b204 from sulfolobus turreted icosahedral virus 2 in complex with amppcp 0.7211 403 763
1e9s-assembly1.cif.gz_G bacterial conjugative coupling protein trwbdeltan70. unbound monoclinic form. 0.72 391 772
1e9s-assembly2.cif.gz_J bacterial conjugative coupling protein trwbdeltan70. unbound monoclinic form. 0.7189 397 772
ID Description Score Start End Superfamily
1e9sG01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7437 391 772 3.40.50.300
af_A0A0P0VNR0_373_561_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6883 630 701 3.40.50.300
4kftA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6667 599 768 3.40.50.300
af_A0A1D6K989_211_396_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6633 630 706 3.40.50.300
4d2iB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6463 374 768 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A2M8ERN2-F1-model_v4 Type IV secretion system coupling protein TraD DNA-binding domain-containing protein 0.9891 379 704
AF-A0A2H0X0K7-F1-model_v4 Type IV secretion system coupling protein TraD DNA-binding domain-containing protein 0.9856 396 785
AF-A0A2H0W1N3-F1-model_v4 Type IV secretion system coupling protein TraD DNA-binding domain-containing protein 0.9829 381 687
AF-A0A2H0X0K7-F1-model_v4 Type IV secretion system coupling protein TraD DNA-binding domain-containing protein 0.9806 396 785
AF-A0A535F0S5-F1-model_v4 DUF87 domain-containing protein 0.9791 378 705 GO:0005524

Map