F307795

General Info

Members Datasets Scaffolds Average Seq Length
200 150 400 265

Family's Representative Sequence

Representative Sequence 3300049763|Ga0501266_001477|Ga0501266_001477_1645_2520
Length 291
Sequence MQAEPLPISQPDASLPHATERVALGVSYNGQAYNGWQSQLSGNTIQDKLEAALGRFATHAVSTLCAGRTDSGVHGLMQVVHFDTSVHRPEASWVRGTNTFLPPDIAVQWARHVPSGFHARGSATARRYAYVLLQSPVRPSVEAGRVGWVYHPLDGDAMRQAASALLGEHDFTSFRASACQAKSPVKTLQRIDISCNRLSPPHPELGWSTCYWRFEFEANAFLHHMIRNIMGCLVAIGNGKQPVQWMQQVLDARSRDAAAPTFSPDGLYFLGPVYDAAWNLPERTPPFDWLP

Samples

Sample ID Description Type Environment
1 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
4 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
10 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
11 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
12 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
13 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
14 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
15 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
18 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
19 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
20 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
21 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
22 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
36 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300012513 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 Metagenome Rhizosphere
40 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
41 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
42 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
43 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
44 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
45 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
46 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
47 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
56 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
64 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
67 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
68 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
69 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
70 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
71 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
72 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
73 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
78 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
85 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
86 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
87 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
88 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
89 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
90 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
91 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
92 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
93 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
94 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
95 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
96 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
97 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
98 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
99 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
100 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
103 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
104 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
105 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
106 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
107 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
108 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
109 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
110 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
111 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
112 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
113 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
114 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
119 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
120 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
121 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
122 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
123 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
124 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
125 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
126 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
127 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
128 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
129 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
130 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
131 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
132 2547132374 Acidovorax radicis N35 Isolate Unclassified
133 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
134 2643221570 Acidovorax sp. Root568 Isolate Unclassified
135 2643221596 Acidovorax sp. Root70 Isolate Unclassified
136 2643221609 Acidovorax sp. Root217 Isolate Unclassified
137 2643221611 Acidovorax sp. Root219 Isolate Unclassified
138 2643221652 Acidovorax sp. Root402 Isolate Unclassified
139 2643221717 Acidovorax sp. Root267 Isolate Unclassified
140 2721755523 Delftia sp. HK171 Isolate Unclassified
141 2738543012 Acidovorax sp. CF301 Isolate Unclassified
142 2816332133 Acidovorax radicis 2721A Isolate Unclassified
143 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
144 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
145 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
146 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
147 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
148 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
149 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
150 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90
Metatranscriptomes 0
Isolates 10

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 33.5
Nodule 2
Rhizoplane 2
Rhizosphere 44
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501266_001477 3300049763 Bacteria 3002
2 SwRhRL2b_contig_1622375 2162886007 Bacteria 1131
3 JGI25155J39150_1000041 3300002704 Bacteria 88843
4 JGI25156J39149_1000031 3300002705 Bacteria 124983
5 JGI25154J39366_1000049 3300002738 Bacteria 124995
6 JGI25157J39369_1000041 3300002741 Bacteria 124982
7 JGI25159J45721_1010388 3300002987 Bacteria 2372
8 JGI25159J45721_1011303 3300002987 Bacteria 2198
9 JGI25151J46595_10007084 3300003187 Bacteria 5535
10 JGI25151J46595_10020376 3300003187 Bacteria 2797
11 JGI25153J46596_10010740 3300003215 Bacteria 4112
12 Ga0055526_1010822 3300003771 Bacteria 4194
13 Ga0055526_1010854 3300003771 Bacteria 4186
14 Ga0055537_1001500 3300003773 Bacteria 8983
15 Ga0055524_1000228 3300003775 Bacteria 59742
16 Ga0055536_1002721 3300003781 Bacteria 9803
17 Ga0055534_1001244 3300003784 Bacteria 10533
18 Ga0055528_1011390 3300003790 Bacteria 3536
19 Ga0055530_10000666 3300003791 Bacteria 29345
20 Ga0055540_1000010 3300003792 Bacteria 290865
21 Ga0055540_1008758 3300003792 Bacteria 3594
22 Ga0055531_10000322 3300003794 Bacteria 47122
23 Ga0055531_10001404 3300003794 Bacteria 17808
24 Ga0055531_10057178 3300003794 Bacteria 979
25 Ga0065165_1009772 3300005262 Bacteria 4242
26 Ga0065165_1037149 3300005262 Bacteria 1478
27 Ga0065704_10073715 3300005289 Bacteria 6853
28 Ga0065707_10291161 3300005295 Bacteria 1025
29 Ga0068868_100303009 3300005338 Bacteria 1357
30 Ga0070707_100226413 3300005468 Bacteria 1821
31 Ga0068853_100488163 3300005539 Bacteria 1162
32 Ga0068857_100206923 3300005577 Bacteria 1790
33 Ga0068856_100253819 3300005614 Bacteria 1773
34 Ga0075368_10015974 3300006042 Bacteria 2791
35 Ga0075368_10073799 3300006042 Bacteria 1381
36 Ga0075363_100160163 3300006048 Bacteria 1274
37 Ga0075364_10005500 3300006051 Bacteria 7370
38 Ga0075364_10022882 3300006051 Bacteria 3952
39 Ga0075432_10030774 3300006058 Bacteria 1856
40 Ga0075362_10164193 3300006177 Bacteria 1070
41 Ga0075367_10006981 3300006178 Bacteria 5750
42 Ga0075366_10074805 3300006195 Bacteria 2020
43 Ga0075366_10297659 3300006195 Bacteria 987
44 Ga0075430_100088249 3300006846 Bacteria 2595
45 Ga0079104_1000002 3300006946 Bacteria 514469
46 Ga0079104_1029980 3300006946 Bacteria 1365
47 Ga0105250_10003071 3300009092 Bacteria 8051
48 Ga0105243_10002783 3300009148 Bacteria 14526
49 Ga0105242_10001350 3300009176 Bacteria 19375
50 Ga0157326_1002114 3300012513 Bacteria 2149
51 Ga0157376_10062455 3300014969 Bacteria 3134
52 Ga0209435_100014 3300025206 Bacteria 322129
53 Ga0207425_1025786 3300025245 Bacteria 1210
54 Ga0209646_1000001 3300025246 Bacteria 3092932
55 Ga0209026_1000073 3300025250 Bacteria 205399
56 Ga0209759_1000013 3300025256 Bacteria 399300
57 Ga0209129_1017548 3300025258 Bacteria 1400
58 Ga0209565_1000824 3300025263 Bacteria 17629
59 Ga0209565_1010435 3300025263 Bacteria 2303
60 Ga0209673_1000008 3300025273 Bacteria 626013
61 Ga0209675_1000942 3300025291 Bacteria 18500
62 Ga0209676_1000007 3300025292 Bacteria 1029371
63 Ga0209676_1013661 3300025292 Bacteria 3107
64 Ga0209025_1002450 3300025294 Bacteria 19609
65 Ga0209025_1012482 3300025294 Bacteria 5437
66 Ga0209025_1051787 3300025294 Bacteria 1627
67 Ga0209564_1001825 3300025295 Bacteria 19536
68 Ga0209050_1000003 3300025298 Bacteria 1609245
69 Ga0209256_1000001 3300025299 Bacteria 2166974
70 Ga0207426_1003424 3300025302 Bacteria 8643
71 Ga0209051_1000003 3300025303 Bacteria 1609245
72 Ga0209051_1000244 3300025303 Bacteria 91505
73 Ga0209257_1000020 3300025304 Bacteria 773356
74 Ga0209257_1000144 3300025304 Bacteria 197078
75 Ga0209257_1016416 3300025304 Bacteria 2997
76 Ga0207686_10004245 3300025934 Bacteria 7679
77 Ga0207709_10000015 3300025935 Bacteria 493221
78 Ga0207677_10099075 3300026023 Bacteria 2139
79 Ga0207639_10293075 3300026041 Bacteria 1435
80 Ga0207639_10430052 3300026041 Bacteria 1195
81 Ga0207674_10144793 3300026116 Bacteria 2335
82 Ga0209281_1000007 3300027111 Bacteria 938265
83 Ga0209971_1001622 3300027682 Bacteria 5559
84 Ga0307515_10000084 3300028794 Bacteria 221434
85 Ga0307515_10001533 3300028794 Bacteria 51699
86 Ga0307515_10006008 3300028794 Bacteria 24426
87 Ga0307512_10040383 3300030522 Bacteria 3895
88 Ga0265330_10000022 3300031235 Bacteria 154198
89 Ga0265332_10000001 3300031238 Bacteria 863783
90 Ga0265325_10007404 3300031241 Bacteria 6572
91 Ga0307513_10000011 3300031456 Bacteria 354929
92 Ga0307513_10023451 3300031456 Bacteria 7208
93 Ga0307513_10295290 3300031456 Bacteria 1390
94 Ga0307408_100000874 3300031548 Bacteria 23686
95 Ga0307408_100008340 3300031548 Bacteria 6843
96 Ga0307408_100613008 3300031548 Bacteria 969
97 Ga0307508_10000140 3300031616 Bacteria 85941
98 Ga0307514_10000319 3300031649 Bacteria 115327
99 Ga0307514_10003920 3300031649 Bacteria 13920
100 Ga0265314_10000013 3300031711 Bacteria 403405
101 Ga0307516_10001303 3300031730 Bacteria 34698
102 Ga0307516_10233464 3300031730 Bacteria 1542
103 Ga0307406_10004610 3300031901 Bacteria 7504
104 Ga0307411_10262908 3300032005 Bacteria 1364
105 Ga0307411_10316014 3300032005 Bacteria 1259
106 Ga0307507_10031471 3300033179 Bacteria 5569
107 Ga0395899_0016021 3300037312 Bacteria 5716
108 Ga0395899_0172075 3300037312 Bacteria 1525
109 Ga0395900_0014676 3300037418 Bacteria 7991
110 Ga0395900_0074107 3300037418 Bacteria 3500
111 Ga0395900_0112496 3300037418 Bacteria 2795
112 Ga0395900_0125006 3300037418 Bacteria 2638
113 Ga0395898_0018062 3300037466 Bacteria 7194
114 Ga0395905_0000407 3300037471 Bacteria 60417
115 Ga0395905_0000684 3300037471 Bacteria 44904
116 Ga0395905_0016807 3300037471 Bacteria 6950
117 Ga0395901_0015303 3300038443 Bacteria 7807
118 Ga0395901_0036948 3300038443 Bacteria 5050
119 Ga0395901_0082880 3300038443 Bacteria 3351
120 Ga0395901_0444057 3300038443 Bacteria 1327
121 Ga0451798_0038381 3300041458 Bacteria 1794
122 Ga0451800_0410668 3300041459 Bacteria 2378
123 Ga0451807_0990607 3300041486 Bacteria 999
124 Ga0451855_1322946 3300041511 Bacteria 1062
125 Ga0439449_0000212 3300042007 Bacteria 20523
126 Ga0439449_0034447 3300042007 Bacteria 1886
127 Ga0439462_0004891 3300042015 Bacteria 3289
128 Ga0439462_0008238 3300042015 Bacteria 2624
129 Ga0450923_018127 3300042125 Bacteria 1344
130 Ga0450891_001492 3300042129 Bacteria 2415
131 Ga0450892_001865 3300042130 Bacteria 1903
132 Ga0450903_013894 3300042138 Bacteria 1278
133 Ga0450893_0006420 3300042532 Bacteria 1900
134 Ga0450893_0017805 3300042532 Bacteria 1209
135 Ga0466966_0011413 3300044684 Bacteria 5893
136 Ga0466961_0010659 3300044693 Bacteria 5867
137 Ga0466961_0334946 3300044693 Bacteria 922
138 Ga0453684_0004267 3300044712 Bacteria 30523
139 Ga0466968_0038244 3300044735 Bacteria 2016
140 Ga0466970_0081621 3300044765 Bacteria 1748
141 Ga0466959_0018612 3300045049 Bacteria 5101
142 Ga0451576_0355377 3300045051 Bacteria 1534
143 Ga0466967_0191132 3300045976 Bacteria 1935
144 Ga0495610_0043887 3300046512 Bacteria 2224
145 Ga0495632_0010620 3300046519 Bacteria 5434
146 Ga0495632_0212052 3300046519 Bacteria 878
147 Ga0495663_0080449 3300046525 Bacteria 1049
148 Ga0495642_0026615 3300046528 Bacteria 2298
149 Ga0495654_0003724 3300046530 Bacteria 9250
150 Ga0495597_0000110 3300046542 Bacteria 72678
151 Ga0495633_0005080 3300046558 Bacteria 8184
152 Ga0495625_0009603 3300046660 Bacteria 8075
153 Ga0496109_0260415 3300048912 Bacteria 1634
154 Ga0496125_0003647 3300048928 Bacteria 18422
155 Ga0496125_0101932 3300048928 Bacteria 2111
156 Ga0496126_0038716 3300048929 Bacteria 4433
157 Ga0501031_0014414 3300049568 Bacteria 5138
158 Ga0501032_0274941 3300049569 Bacteria 1091
159 Ga0501047_0095726 3300049581 Bacteria 2848
160 Ga0501047_0295635 3300049581 Bacteria 1463
161 Ga0501044_0304002 3300049823 Bacteria 1523
162 nmdc:mga03683_228266_c1 3300050489 Bacteria 860
163 nmdc:mga00v17_6745_c1 3300050491 Bacteria 3937
164 nmdc:mga0yw44_14099_c1 3300050492 Bacteria 4232
165 nmdc:mga0yw44_146368_c1 3300050492 Bacteria 1538
166 nmdc:mga0yw44_335545_c1 3300050492 Bacteria 1016
167 nmdc:mga0k408_115002_c1 3300050493 Bacteria 1592
168 nmdc:mga0k408_323502_c1 3300050493 Bacteria 920
169 nmdc:mga0k408_79907_c1 3300050493 Bacteria 1914
170 nmdc:mga04h51_218093_c1 3300050495 Bacteria 755
171 Ga0500651_0037044 3300053093 Bacteria 3073
172 Ga0500593_004113 3300053117 Bacteria 5594
173 Ga0500642_0041636 3300053130 Bacteria 1987
174 Ga0500559_0093617 3300053136 Bacteria 1378
175 Ga0500568_0048511 3300053139 Bacteria 1678
176 Ga0500645_001437 3300053730 Bacteria 12084
177 Ga0500645_006386 3300053730 Bacteria 4213
178 Ga0500645_048869 3300053730 Bacteria 1238
179 Ga0500661_001281 3300055283 Bacteria 4697
180 Ga0501082_0491173 3300060353 Bacteria 1073
181 2511244153 2511231002 Bacteria 5042903
182 2548499976 2547132374 Bacteria 5530232
183 2587757635 2585428062 Bacteria 6842168
184 2643868212 2643221570 Bacteria 5103772
185 2643993794 2643221596 Bacteria 5006805
186 2644059770 2643221609 Bacteria 6756331
187 2644074913 2643221611 Bacteria 6820941
188 2644293816 2643221652 Bacteria 5140275
189 2644644706 2643221717 Bacteria 5676132
190 2722882250 2721755523 Bacteria 6430384
191 2739241298 2738543012 Bacteria 7115078
192 2816473464 2816332133 Bacteria 7249298
193 2839142405 2839138175 Bacteria 6549354
194 2842721335 2842718218 Bacteria 4560148
195 2881105449 2881101125 Bacteria 4590519
196 2894026901 2894023352 Bacteria 5167372
197 2904481013 2904479285 Bacteria 5073931
198 2932424770 2932422444 Bacteria 4678430
199 2974322581 2974320154 Bacteria 4571377
200 2990713430 2990710928 Bacteria 5002431
201 Ga0501266_001477
202 SwRhRL2b_contig_1622375
203 JGI25155J39150_1000041
204 JGI25156J39149_1000031
205 JGI25154J39366_1000049
206 JGI25157J39369_1000041
207 JGI25159J45721_1010388
208 JGI25159J45721_1011303
209 JGI25151J46595_10007084
210 JGI25151J46595_10020376
211 JGI25153J46596_10010740
212 Ga0055526_1010822
213 Ga0055526_1010854
214 Ga0055537_1001500
215 Ga0055524_1000228
216 Ga0055536_1002721
217 Ga0055534_1001244
218 Ga0055528_1011390
219 Ga0055530_10000666
220 Ga0055540_1000010
221 Ga0055540_1008758
222 Ga0055531_10000322
223 Ga0055531_10001404
224 Ga0055531_10057178
225 Ga0065165_1009772
226 Ga0065165_1037149
227 Ga0065704_10073715
228 Ga0065707_10291161
229 Ga0068868_100303009
230 Ga0070707_100226413
231 Ga0068853_100488163
232 Ga0068857_100206923
233 Ga0068856_100253819
234 Ga0075368_10015974
235 Ga0075368_10073799
236 Ga0075363_100160163
237 Ga0075364_10005500
238 Ga0075364_10022882
239 Ga0075432_10030774
240 Ga0075362_10164193
241 Ga0075367_10006981
242 Ga0075366_10074805
243 Ga0075366_10297659
244 Ga0075430_100088249
245 Ga0079104_1000002
246 Ga0079104_1029980
247 Ga0105250_10003071
248 Ga0105243_10002783
249 Ga0105242_10001350
250 Ga0157326_1002114
251 Ga0157376_10062455
252 Ga0209435_100014
253 Ga0207425_1025786
254 Ga0209646_1000001
255 Ga0209026_1000073
256 Ga0209759_1000013
257 Ga0209129_1017548
258 Ga0209565_1000824
259 Ga0209565_1010435
260 Ga0209673_1000008
261 Ga0209675_1000942
262 Ga0209676_1000007
263 Ga0209676_1013661
264 Ga0209025_1002450
265 Ga0209025_1012482
266 Ga0209025_1051787
267 Ga0209564_1001825
268 Ga0209050_1000003
269 Ga0209256_1000001
270 Ga0207426_1003424
271 Ga0209051_1000003
272 Ga0209051_1000244
273 Ga0209257_1000020
274 Ga0209257_1000144
275 Ga0209257_1016416
276 Ga0207686_10004245
277 Ga0207709_10000015
278 Ga0207677_10099075
279 Ga0207639_10293075
280 Ga0207639_10430052
281 Ga0207674_10144793
282 Ga0209281_1000007
283 Ga0209971_1001622
284 Ga0307515_10000084
285 Ga0307515_10001533
286 Ga0307515_10006008
287 Ga0307512_10040383
288 Ga0265330_10000022
289 Ga0265332_10000001
290 Ga0265325_10007404
291 Ga0307513_10000011
292 Ga0307513_10023451
293 Ga0307513_10295290
294 Ga0307408_100000874
295 Ga0307408_100008340
296 Ga0307408_100613008
297 Ga0307508_10000140
298 Ga0307514_10000319
299 Ga0307514_10003920
300 Ga0265314_10000013
301 Ga0307516_10001303
302 Ga0307516_10233464
303 Ga0307406_10004610
304 Ga0307411_10262908
305 Ga0307411_10316014
306 Ga0307507_10031471
307 Ga0395899_0016021
308 Ga0395899_0172075
309 Ga0395900_0014676
310 Ga0395900_0074107
311 Ga0395900_0112496
312 Ga0395900_0125006
313 Ga0395898_0018062
314 Ga0395905_0000407
315 Ga0395905_0000684
316 Ga0395905_0016807
317 Ga0395901_0015303
318 Ga0395901_0036948
319 Ga0395901_0082880
320 Ga0395901_0444057
321 Ga0451798_0038381
322 Ga0451800_0410668
323 Ga0451807_0990607
324 Ga0451855_1322946
325 Ga0439449_0000212
326 Ga0439449_0034447
327 Ga0439462_0004891
328 Ga0439462_0008238
329 Ga0450923_018127
330 Ga0450891_001492
331 Ga0450892_001865
332 Ga0450903_013894
333 Ga0450893_0006420
334 Ga0450893_0017805
335 Ga0466966_0011413
336 Ga0466961_0010659
337 Ga0466961_0334946
338 Ga0453684_0004267
339 Ga0466968_0038244
340 Ga0466970_0081621
341 Ga0466959_0018612
342 Ga0451576_0355377
343 Ga0466967_0191132
344 Ga0495610_0043887
345 Ga0495632_0010620
346 Ga0495632_0212052
347 Ga0495663_0080449
348 Ga0495642_0026615
349 Ga0495654_0003724
350 Ga0495597_0000110
351 Ga0495633_0005080
352 Ga0495625_0009603
353 Ga0496109_0260415
354 Ga0496125_0003647
355 Ga0496125_0101932
356 Ga0496126_0038716
357 Ga0501031_0014414
358 Ga0501032_0274941
359 Ga0501047_0095726
360 Ga0501047_0295635
361 Ga0501044_0304002
362 nmdc:mga03683_228266_c1
363 nmdc:mga00v17_6745_c1
364 nmdc:mga0yw44_14099_c1
365 nmdc:mga0yw44_146368_c1
366 nmdc:mga0yw44_335545_c1
367 nmdc:mga0k408_115002_c1
368 nmdc:mga0k408_323502_c1
369 nmdc:mga0k408_79907_c1
370 nmdc:mga04h51_218093_c1
371 Ga0500651_0037044
372 Ga0500593_004113
373 Ga0500642_0041636
374 Ga0500559_0093617
375 Ga0500568_0048511
376 Ga0500645_001437
377 Ga0500645_006386
378 Ga0500645_048869
379 Ga0500661_001281
380 Ga0501082_0491173
381 2511244153
382 2548499976
383 2587757635
384 2643868212
385 2643993794
386 2644059770
387 2644074913
388 2644293816
389 2644644706
390 2722882250
391 2739241298
392 2816473464
393 2839142405
394 2842721335
395 2881105449
396 2894026901
397 2904481013
398 2932424770
399 2974322581
400 2990713430

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

25

120

0.94

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

161

275

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9429 2 268
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9375 2 268
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.9209 2 260
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.9029 2 260
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.8942 2 268
ID Description Score Start End Superfamily
2nqpB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9648 2 104 3.30.70.580
af_C7J2E5_59_129_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9516 1 64 3.30.70.580
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9436 1 104 3.30.70.580
af_A0A0R0F7R0_40_148_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9267 2 107 3.30.70.580
af_Q2QWH9_69_188_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9183 2 105 3.30.70.580
ID Description Score Start End GO Terms
AF-A0A844AZB0-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.99 1 276 GO:0003723
GO:0009982
GO:0031119
GO:0140098
AF-A0A844AZB0-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9862 1 276 GO:0003723
GO:0009982
GO:0031119
GO:0140098
AF-A0A2E9BSE5-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9848 1 170 GO:0003723
GO:0031119
GO:0160147
AF-A0A534B8P7-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9822 1 93 GO:0003723
GO:0009982
GO:0031119
GO:0140098
AF-A0A2E9BSE5-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.979 1 170 GO:0003723
GO:0031119
GO:0160147

Map