F307404

General Info

Members Datasets Scaffolds Average Seq Length
200 172 400 326

Family's Representative Sequence

Representative Sequence 3300032005|Ga0307411_10187696|Ga0307411_101876961
Length 344
Sequence MKLSATGKILPAVIAAGVFLCNIAVAAPAREPGVDPNYPSRPVRFITPAAPGGTTDFLARLFANKLTETLKQQFIVDNRASASGVLAAELTTQAAPDGYTLFVPYHQHTINAALLPKLPYHPVNDFTPITQLTAAPLMLVVHPSSPPKNFKEFMDWTKTFKGDLNFGSAGIGSGGHLAGELYKLQARVNATHIPYKGTGPATTALLGQEYHFNFMGLSAATKLVSAGRLKGLAVTSLKRLEAMPEIPTVAESGLPGFEVVGWYGIFAPAKLPKPLLTRIHSELIKALKEPDIQKAIFNQGAQPVGNSPEEFRKYLLADMDKWKMVVKASGAKAYLVIRTGLCFW

Samples

Sample ID Description Type Environment
1 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
12 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
13 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
14 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
15 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
16 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
17 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
18 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
19 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
20 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
21 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
22 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
23 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
24 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
25 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
26 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
27 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
28 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
29 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
32 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
33 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
34 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
37 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
38 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
41 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
42 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
43 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
44 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
45 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
46 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
47 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
48 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
49 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
50 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
51 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
59 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
60 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
61 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
62 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
64 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
66 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
70 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
72 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
74 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
76 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
94 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
98 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
99 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
100 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
101 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
102 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
103 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
104 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
105 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
106 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
107 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
108 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
109 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
110 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
111 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
112 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
113 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
114 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
115 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
116 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
117 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
118 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
119 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
120 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
121 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
122 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
123 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
124 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
125 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
126 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
127 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
128 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
129 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
130 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
131 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
138 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
139 3300049778 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
142 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
143 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
144 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
145 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
146 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
147 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
148 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
149 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
150 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
151 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
152 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
153 2643221609 Acidovorax sp. Root217 Isolate Unclassified
154 2643221611 Acidovorax sp. Root219 Isolate Unclassified
155 2643221658 Variovorax sp. Root411 Isolate Unclassified
156 2721755523 Delftia sp. HK171 Isolate Unclassified
157 2738543012 Acidovorax sp. CF301 Isolate Unclassified
158 2816332133 Acidovorax radicis 2721A Isolate Unclassified
159 2818991446 Variovorax sp. 1180 Isolate Unclassified
160 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
161 2899924645 Variovorax sp. 369 Isolate Unclassified
162 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
163 2904456579 Variovorax sp. 2002 Isolate Unclassified
164 2928037797 Variovorax sp. 1126 Isolate Unclassified
165 2928044640 Variovorax sp. 1128 Isolate Unclassified
166 2928051484 Variovorax sp. 1133 Isolate Unclassified
167 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
168 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
169 2929520902 Variovorax beijingensis 502 Isolate Unclassified
170 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere
171 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
172 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90
Metatranscriptomes 0
Isolates 10

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27
Nodule 1
Rhizoplane 1.5
Rhizosphere 54.5
Stem 0
Stem Tuber 0
Unclassified 1.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307411_10187696 3300032005 Unclassified 1575
2 JGI24739J22299_10010305 3300001989 Bacteria 3471
3 JGI25152J39213_1000369 3300002773 Bacteria 27621
4 JGI25150J39212_1001257 3300002774 Bacteria 7331
5 JGI25159J45721_1000878 3300002987 Bacteria 13061
6 JGI25151J46595_10000717 3300003187 Bacteria 27621
7 JGI25153J46596_10000421 3300003215 Bacteria 27621
8 JGI25153J46596_10004187 3300003215 Bacteria 7826
9 rootH1_10035912 3300003316 Bacteria 2017
10 rootL2_10018475 3300003322 Bacteria 5594
11 JGI25160J50197_1000406 3300003354 Bacteria 27621
12 JGI25161J50226_1000710 3300003374 Bacteria 13074
13 Ga0055535_1000115 3300003761 Bacteria 86313
14 Ga0055542_1000028 3300003762 Bacteria 251458
15 Ga0055526_1000615 3300003771 Bacteria 27621
16 Ga0055537_1000424 3300003773 Bacteria 27621
17 Ga0055524_1000566 3300003775 Bacteria 27621
18 Ga0055534_1000384 3300003784 Bacteria 27621
19 Ga0055528_1000579 3300003790 Bacteria 27621
20 Ga0055530_10000630 3300003791 Bacteria 30400
21 Ga0055531_10012726 3300003794 Bacteria 3933
22 Ga0055543_1000397 3300004625 Bacteria 27842
23 Ga0065165_1001306 3300005262 Bacteria 27842
24 Ga0070676_10008957 3300005328 Bacteria 5413
25 Ga0070670_100060600 3300005331 Bacteria 3249
26 Ga0070670_100111782 3300005331 Bacteria 2354
27 Ga0070677_10021847 3300005333 Bacteria 2351
28 Ga0070689_100105045 3300005340 Bacteria 2240
29 Ga0070689_100215613 3300005340 Bacteria 1573
30 Ga0070668_100120905 3300005347 Bacteria 2093
31 Ga0070669_100027933 3300005353 Bacteria 4062
32 Ga0070669_100039857 3300005353 Bacteria 3414
33 Ga0070675_100032589 3300005354 Bacteria 4218
34 Ga0070675_100119568 3300005354 Bacteria 2238
35 Ga0070671_100015964 3300005355 Bacteria 6067
36 Ga0070674_100008624 3300005356 Bacteria 6076
37 Ga0070667_100352950 3300005367 Bacteria 1332
38 Ga0070672_100240683 3300005543 Bacteria 1522
39 Ga0070665_100008732 3300005548 Bacteria 10256
40 Ga0070665_100213955 3300005548 Bacteria 1928
41 Ga0068864_100210604 3300005618 Bacteria 1789
42 Ga0068864_100511819 3300005618 Bacteria 1156
43 Ga0068851_10001631 3300005834 Bacteria 9842
44 Ga0068870_10108975 3300005840 Bacteria 1578
45 Ga0068863_100137024 3300005841 Bacteria 2339
46 Ga0068863_100266884 3300005841 Bacteria 1656
47 Ga0068863_100414566 3300005841 Bacteria 1319
48 Ga0068860_100047040 3300005843 Bacteria 4112
49 Ga0068860_100066815 3300005843 Bacteria 3416
50 Ga0081455_10059621 3300005937 Bacteria 3221
51 Ga0075365_10014753 3300006038 Bacteria 4706
52 Ga0075363_100098084 3300006048 Bacteria 1620
53 Ga0075362_10006891 3300006177 Bacteria 4259
54 Ga0075367_10251036 3300006178 Bacteria 1110
55 Ga0075369_10008900 3300006186 Bacteria 3882
56 Ga0075369_10060582 3300006186 Bacteria 1651
57 Ga0075366_10004254 3300006195 Bacteria 7677
58 Ga0075366_10100316 3300006195 Bacteria 1737
59 Ga0075370_10004838 3300006353 Bacteria 6602
60 Ga0068871_100102594 3300006358 Bacteria 2398
61 Ga0075430_100039966 3300006846 Bacteria 3971
62 Ga0075430_100080423 3300006846 Bacteria 2730
63 Ga0075431_100015583 3300006847 Bacteria 7704
64 Ga0079104_1000095 3300006946 Bacteria 129800
65 Ga0105248_10224461 3300009177 Bacteria 2115
66 Ga0157373_10004038 3300013100 Bacteria 11063
67 Ga0157371_10005199 3300013102 Bacteria 11066
68 Ga0157370_10061321 3300013104 Bacteria 3570
69 Ga0157375_10085464 3300013308 Bacteria 3204
70 Ga0163163_10106073 3300014325 Bacteria 2836
71 Ga0182008_10006757 3300014497 Bacteria 6383
72 Ga0182006_1005268 3300015261 Bacteria 6187
73 Ga0163161_10115724 3300017792 Bacteria 2010
74 Ga0209436_102104 3300025208 Bacteria 6241
75 Ga0209258_100067 3300025242 Bacteria 287603
76 Ga0207425_1000440 3300025245 Bacteria 27322
77 Ga0209148_1000067 3300025254 Bacteria 338678
78 Ga0209129_1000325 3300025258 Bacteria 42074
79 Ga0209565_1000027 3300025263 Bacteria 360545
80 Ga0209673_1000031 3300025273 Bacteria 347560
81 Ga0209130_1000025 3300025284 Bacteria 336491
82 Ga0209675_1000157 3300025291 Bacteria 88700
83 Ga0209676_1001639 3300025292 Bacteria 19670
84 Ga0209025_1000977 3300025294 Bacteria 42782
85 Ga0209564_1000040 3300025295 Bacteria 411388
86 Ga0209758_1000050 3300025297 Bacteria 345008
87 Ga0209256_1000023 3300025299 Bacteria 461150
88 Ga0207426_1000202 3300025302 Bacteria 143712
89 Ga0207426_1022111 3300025302 Bacteria 2188
90 Ga0209051_1031461 3300025303 Bacteria 2041
91 Ga0209257_1001460 3300025304 Bacteria 27936
92 Ga0207656_10000760 3300025321 Bacteria 10568
93 Ga0207680_10157961 3300025903 Bacteria 1518
94 Ga0207645_10123444 3300025907 Bacteria 1682
95 Ga0207643_10032128 3300025908 Bacteria 2930
96 Ga0207643_10114783 3300025908 Bacteria 1589
97 Ga0207650_10001471 3300025925 Bacteria 16902
98 Ga0207650_10161143 3300025925 Bacteria 1777
99 Ga0207659_10016748 3300025926 Bacteria 4776
100 Ga0207659_10064195 3300025926 Bacteria 2657
101 Ga0207659_10098545 3300025926 Bacteria 2198
102 Ga0207686_10163732 3300025934 Bacteria 1562
103 Ga0207709_10000171 3300025935 Bacteria 86834
104 Ga0207670_10011208 3300025936 Bacteria 5195
105 Ga0207691_10180506 3300025940 Bacteria 1845
106 Ga0207651_10125727 3300025960 Bacteria 1953
107 Ga0207668_10074482 3300025972 Bacteria 2437
108 Ga0207658_10054402 3300025986 Bacteria 2962
109 Ga0207648_10265850 3300026089 Bacteria 1531
110 Ga0207683_10150871 3300026121 Bacteria 2097
111 Ga0209281_1000002 3300027111 Bacteria 1924012
112 Ga0209974_10002189 3300027876 Bacteria 7122
113 Ga0268266_10456679 3300028379 Bacteria 1215
114 Ga0268264_10020910 3300028381 Bacteria 5346
115 Ga0307517_10121702 3300028786 Bacteria 1926
116 Ga0307515_10000398 3300028794 Bacteria 105087
117 Ga0307515_10021295 3300028794 Bacteria 11503
118 Ga0307515_10021556 3300028794 Bacteria 11416
119 Ga0307515_10150628 3300028794 Bacteria 2433
120 Ga0316181_1073361 3300030744 Bacteria 2409
121 Ga0265325_10000835 3300031241 Bacteria 22287
122 Ga0307513_10151374 3300031456 Bacteria 2228
123 Ga0307509_10019604 3300031507 Bacteria 7704
124 Ga0307408_100004796 3300031548 Bacteria 9106
125 Ga0307408_100014671 3300031548 Bacteria 5206
126 Ga0307514_10001732 3300031649 Bacteria 24991
127 Ga0307514_10007664 3300031649 Bacteria 9291
128 Ga0307413_10262653 3300031824 Bacteria 1288
129 Ga0307410_10187421 3300031852 Bacteria 1571
130 Ga0307406_10003099 3300031901 Bacteria 9036
131 Ga0307406_10004013 3300031901 Bacteria 8007
132 Ga0307407_10076256 3300031903 Unclassified 2013
133 Ga0307412_10016942 3300031911 Bacteria 4354
134 Ga0307416_100064567 3300032002 Bacteria 3004
135 Ga0307416_100475947 3300032002 Bacteria 1308
136 Ga0307414_10131743 3300032004 Bacteria 1942
137 Ga0307411_10042928 3300032005 Bacteria 2890
138 Ga0307415_100004839 3300032126 Bacteria 7060
139 Ga0307510_10166014 3300033180 Bacteria 1796
140 Ga0395905_0009378 3300037471 Bacteria 9572
141 Ga0436365_1529079 3300039437 Bacteria 1839
142 Ga0436361_1212993 3300039447 Bacteria 28758
143 Ga0439436_0032612 3300041404 Bacteria 1510
144 Ga0439445_0022466 3300042004 Bacteria 1591
145 Ga0439449_0028812 3300042007 Bacteria 2069
146 Ga0439457_013314 3300042014 Bacteria 1849
147 Ga0439462_0009871 3300042015 Bacteria 2416
148 Ga0450911_000412 3300042115 Bacteria 14145
149 Ga0466972_0160505 3300044658 Bacteria 1056
150 Ga0453683_0000832 3300044673 Bacteria 29925
151 Ga0466960_0058253 3300044901 Bacteria 1886
152 Ga0495597_0005495 3300046542 Bacteria 6705
153 Ga0495647_0023538 3300046681 Bacteria 2234
154 Ga0495649_0020725 3300046694 Bacteria 3685
155 Ga0496102_0043543 3300048905 Bacteria 4071
156 Ga0496110_0374314 3300048913 Unclassified 1298
157 Ga0496114_0071031 3300048917 Bacteria 2925
158 Ga0496121_0003060 3300048924 Bacteria 24253
159 Ga0496122_0003223 3300048925 Bacteria 21687
160 Ga0496123_0000272 3300048926 Bacteria 102825
161 Ga0496125_0006639 3300048928 Bacteria 12451
162 Ga0496125_0040992 3300048928 Bacteria 3964
163 Ga0501034_0035472 3300049571 Bacteria 5056
164 Ga0501034_0512692 3300049571 Bacteria 1112
165 Ga0501198_000016 3300049649 Bacteria 102263
166 Ga0501222_000110 3300049662 Bacteria 19319
167 Ga0501282_001010 3300049778 Bacteria 3190
168 Ga0501035_0348372 3300049822 Bacteria 1240
169 Ga0501226_001852 3300049853 Bacteria 2654
170 nmdc:mga03683_3214_c1 3300050489 Bacteria 5227
171 nmdc:mga0k408_8764_c1 3300050493 Bacteria 5443
172 nmdc:mga07m45_14675_c1 3300050496 Bacteria 4179
173 nmdc:mga0qj67_1823_c1 3300050509 Bacteria 15086
174 nmdc:mga06r32_4881_c1 3300050510 Bacteria 12079
175 nmdc:mga0sz30_35688_c1 3300050516 Bacteria 2076
176 Ga0495655_0001959 3300053083 Bacteria 3212
177 Ga0500646_0000352 3300053090 Bacteria 13806
178 Ga0500583_0004067 3300053092 Bacteria 4709
179 Ga0500608_002117 3300053122 Bacteria 7124
180 Ga0500655_006407 3300053133 Bacteria 2119
181 2644058153 2643221609 Bacteria 6756331
182 2644073193 2643221611 Bacteria 6820941
183 2644326074 2643221658 Bacteria 6064537
184 2722886375 2721755523 Bacteria 6430384
185 2739244500 2738543012 Bacteria 7115078
186 2816469943 2816332133 Bacteria 7249298
187 2819598636 2818991446 Bacteria 7757362
188 2858693412 2858688981 Bacteria 8184122
189 2899926751 2899924645 Bacteria 7487985
190 2904452920 2904449895 Bacteria 6927402
191 2904460051 2904456579 Bacteria 6819253
192 2928043800 2928037797 Bacteria 7273642
193 2928050615 2928044640 Bacteria 7271509
194 2928056969 2928051484 Bacteria 7773759
195 2928070696 2928064002 Bacteria 7419480
196 2928118451 2928115317 Bacteria 6477646
197 2929525902 2929520902 Bacteria 6765052
198 2945974049 2945972063 Bacteria 6086495
199 2954768399 2954767861 Bacteria 5535784
200 2990715049 2990710928 Bacteria 5002431
201 Ga0307411_10187696
202 JGI24739J22299_10010305
203 JGI25152J39213_1000369
204 JGI25150J39212_1001257
205 JGI25159J45721_1000878
206 JGI25151J46595_10000717
207 JGI25153J46596_10000421
208 JGI25153J46596_10004187
209 rootH1_10035912
210 rootL2_10018475
211 JGI25160J50197_1000406
212 JGI25161J50226_1000710
213 Ga0055535_1000115
214 Ga0055542_1000028
215 Ga0055526_1000615
216 Ga0055537_1000424
217 Ga0055524_1000566
218 Ga0055534_1000384
219 Ga0055528_1000579
220 Ga0055530_10000630
221 Ga0055531_10012726
222 Ga0055543_1000397
223 Ga0065165_1001306
224 Ga0070676_10008957
225 Ga0070670_100060600
226 Ga0070670_100111782
227 Ga0070677_10021847
228 Ga0070689_100105045
229 Ga0070689_100215613
230 Ga0070668_100120905
231 Ga0070669_100027933
232 Ga0070669_100039857
233 Ga0070675_100032589
234 Ga0070675_100119568
235 Ga0070671_100015964
236 Ga0070674_100008624
237 Ga0070667_100352950
238 Ga0070672_100240683
239 Ga0070665_100008732
240 Ga0070665_100213955
241 Ga0068864_100210604
242 Ga0068864_100511819
243 Ga0068851_10001631
244 Ga0068870_10108975
245 Ga0068863_100137024
246 Ga0068863_100266884
247 Ga0068863_100414566
248 Ga0068860_100047040
249 Ga0068860_100066815
250 Ga0081455_10059621
251 Ga0075365_10014753
252 Ga0075363_100098084
253 Ga0075362_10006891
254 Ga0075367_10251036
255 Ga0075369_10008900
256 Ga0075369_10060582
257 Ga0075366_10004254
258 Ga0075366_10100316
259 Ga0075370_10004838
260 Ga0068871_100102594
261 Ga0075430_100039966
262 Ga0075430_100080423
263 Ga0075431_100015583
264 Ga0079104_1000095
265 Ga0105248_10224461
266 Ga0157373_10004038
267 Ga0157371_10005199
268 Ga0157370_10061321
269 Ga0157375_10085464
270 Ga0163163_10106073
271 Ga0182008_10006757
272 Ga0182006_1005268
273 Ga0163161_10115724
274 Ga0209436_102104
275 Ga0209258_100067
276 Ga0207425_1000440
277 Ga0209148_1000067
278 Ga0209129_1000325
279 Ga0209565_1000027
280 Ga0209673_1000031
281 Ga0209130_1000025
282 Ga0209675_1000157
283 Ga0209676_1001639
284 Ga0209025_1000977
285 Ga0209564_1000040
286 Ga0209758_1000050
287 Ga0209256_1000023
288 Ga0207426_1000202
289 Ga0207426_1022111
290 Ga0209051_1031461
291 Ga0209257_1001460
292 Ga0207656_10000760
293 Ga0207680_10157961
294 Ga0207645_10123444
295 Ga0207643_10032128
296 Ga0207643_10114783
297 Ga0207650_10001471
298 Ga0207650_10161143
299 Ga0207659_10016748
300 Ga0207659_10064195
301 Ga0207659_10098545
302 Ga0207686_10163732
303 Ga0207709_10000171
304 Ga0207670_10011208
305 Ga0207691_10180506
306 Ga0207651_10125727
307 Ga0207668_10074482
308 Ga0207658_10054402
309 Ga0207648_10265850
310 Ga0207683_10150871
311 Ga0209281_1000002
312 Ga0209974_10002189
313 Ga0268266_10456679
314 Ga0268264_10020910
315 Ga0307517_10121702
316 Ga0307515_10000398
317 Ga0307515_10021295
318 Ga0307515_10021556
319 Ga0307515_10150628
320 Ga0316181_1073361
321 Ga0265325_10000835
322 Ga0307513_10151374
323 Ga0307509_10019604
324 Ga0307408_100004796
325 Ga0307408_100014671
326 Ga0307514_10001732
327 Ga0307514_10007664
328 Ga0307413_10262653
329 Ga0307410_10187421
330 Ga0307406_10003099
331 Ga0307406_10004013
332 Ga0307407_10076256
333 Ga0307412_10016942
334 Ga0307416_100064567
335 Ga0307416_100475947
336 Ga0307414_10131743
337 Ga0307411_10042928
338 Ga0307415_100004839
339 Ga0307510_10166014
340 Ga0395905_0009378
341 Ga0436365_1529079
342 Ga0436361_1212993
343 Ga0439436_0032612
344 Ga0439445_0022466
345 Ga0439449_0028812
346 Ga0439457_013314
347 Ga0439462_0009871
348 Ga0450911_000412
349 Ga0466972_0160505
350 Ga0453683_0000832
351 Ga0466960_0058253
352 Ga0495597_0005495
353 Ga0495647_0023538
354 Ga0495649_0020725
355 Ga0496102_0043543
356 Ga0496110_0374314
357 Ga0496114_0071031
358 Ga0496121_0003060
359 Ga0496122_0003223
360 Ga0496123_0000272
361 Ga0496125_0006639
362 Ga0496125_0040992
363 Ga0501034_0035472
364 Ga0501034_0512692
365 Ga0501198_000016
366 Ga0501222_000110
367 Ga0501282_001010
368 Ga0501035_0348372
369 Ga0501226_001852
370 nmdc:mga03683_3214_c1
371 nmdc:mga0k408_8764_c1
372 nmdc:mga07m45_14675_c1
373 nmdc:mga0qj67_1823_c1
374 nmdc:mga06r32_4881_c1
375 nmdc:mga0sz30_35688_c1
376 Ga0495655_0001959
377 Ga0500646_0000352
378 Ga0500583_0004067
379 Ga0500608_002117
380 Ga0500655_006407
381 2644058153
382 2644073193
383 2644326074
384 2722886375
385 2739244500
386 2816469943
387 2819598636
388 2858693412
389 2899926751
390 2904452920
391 2904460051
392 2928043800
393 2928050615
394 2928056969
395 2928070696
396 2928118451
397 2929525902
398 2945974049
399 2954768399
400 2990715049

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

58

331

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
5oku-assembly1.cif.gz_A r. palustris rpa4515 with adipate 0.9749 34 326
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.9722 34 330
8hkb-assembly1.cif.gz_A tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d 0.9721 39 330
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.9704 34 328
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.9595 34 330
ID Description Score Start End Superfamily
2dvzA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9592 133 251 3.40.190.10
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9576 133 249 3.40.190.10
2dvzA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9458 34 330 3.40.190.150
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9453 133 255 3.40.190.10
2f5xC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9429 134 255 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A1B2QZA4-F1-model_v4 ABC transporter substrate-binding protein 0.9841 34 330
AF-A0A5C8CF86-F1-model_v4 deleted 0.9825 45 330
AF-A0A356LAH3-F1-model_v4 LacI family transcriptional regulator 0.9816 24 330
AF-A0A537DML3-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9816 42 330
AF-A0A7V9LKZ4-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.979 26 316

Map