F306955

General Info

Members Datasets Scaffolds Average Seq Length
200 131 400 958

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10007554|Ga0081539_1000755411
Length 998
Sequence MASKVAAKRNGKKAAASGSRSSQGKSGQSPNGLKSVPGATARTTIAVQGARVHNLKNISVEIPRDSLVVVTGLSGSGKSSLAFDTIYAEGQRRYMESLSSFAKRFVAQVAKPDVDFVFGLSPVISIEQKTIANNPRSTVGTMTDIASYLNLLFATIAQPHCPRTGEPTPSRSANQILETILSLPEGAEIEMRAPVFKIYGEDLDFVFTEVRKKGCRRMIIDGKPVDISTEFELDESKVRDIDAVVDRFVVSRKHEKAIKAGIASTLLVGDGLMQVHLVKGAGKSETERFYRDLCSPTHRFVYGEIAPEYFVFNNPESACRTCGGLGVHKLTHPELLVPDPQRSILGGCFVREAFKYNPDTWDGRVMYSLAKALRFSLESPWEKLPETARQAILYGIDPKKIMVTTPPEAKDQRGDWEGKEVGFGGIARRIERHYRRYRQRGEANSGMEAWLDKVMVEHTCPDCNGARVRATRLMFTIGGKTIHEIGELNFDELYAFLGTIKPAGRGADAGRQVLNEIRGRLELLLGIGLDYLNFNRRSGTLSGGESQRIRLSTQIGSGLMGMLYVLDEPSIGLHPKDNVKMIATLKSLRDIGNTVIVVEHDEDTIRAADHVVEMGPGPGIHGGNVVVQGKLDDVIACDLSPTGQFLSGRRSIAMPKTRRRGTGKMLRVRGARENNLKAVDVTFPLGMLVAITGASGSGKSTLVNEILYKALWKRLVDTRTLPGEHDGVDGVEHVHKVVNIDQSPIGRNSRSNPATYIGFYDTIRDLFTQTPAAVERGYKAGRFSFNVKGGRCEECQGEGVITTQLYFMPDVEVTCGACKGARFNSETLEVTLRGKTIDDILNMSVEEGVTFFASEPAVGKKIEVLNYLGLGYLTLGQSATTLSGGEAQRIKIATELSKLQRAKHTVYILDEPTTGLHLADIERLLESLNRLVDAGHTVLLIEHHLDVIKTADHVIDLGPEGGHAGGEVVVTGTPEEIAACKKSYTGSFLKAHLRAFSS

Samples

Sample ID Description Type Environment
1 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
81 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
84 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
85 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
86 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
87 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
90 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
91 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
92 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
93 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
96 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
97 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
98 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
99 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
100 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
101 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
102 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
103 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
104 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
105 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
106 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
107 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
108 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
109 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
110 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
113 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
114 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
115 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
116 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
117 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
118 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
119 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
120 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
121 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
122 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
123 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
124 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
125 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
126 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
127 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
128 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
129 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
130 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
131 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.5
Nodule 0
Rhizoplane 0.5
Rhizosphere 95
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081539_10007554 3300005985 Bacteria 9843
2 Ga0065707_10003384 3300005295 Bacteria 7109
3 Ga0070683_100000001 3300005329 Bacteria 529385
4 Ga0070683_100004599 3300005329 Bacteria 11394
5 Ga0070683_100009785 3300005329 Bacteria 8215
6 Ga0070683_100050824 3300005329 Bacteria 3839
7 Ga0070683_100068972 3300005329 Bacteria 3295
8 Ga0070670_100001291 3300005331 Bacteria 19978
9 Ga0068869_100027241 3300005334 Bacteria 3982
10 Ga0070666_10014392 3300005335 Bacteria 5037
11 Ga0070687_100010713 3300005343 Bacteria 3980
12 Ga0070669_100014195 3300005353 Bacteria 5668
13 Ga0070675_100017914 3300005354 Bacteria 5634
14 Ga0070671_100012800 3300005355 Bacteria 6764
15 Ga0070673_100009022 3300005364 Bacteria 6676
16 Ga0070713_100001406 3300005436 Bacteria 15420
17 Ga0070713_100031870 3300005436 Bacteria 4204
18 Ga0070701_10008848 3300005438 Bacteria 4378
19 Ga0070700_100023555 3300005441 Bacteria 3602
20 Ga0070708_100000082 3300005445 Bacteria 61560
21 Ga0070662_100009376 3300005457 Bacteria 6398
22 Ga0070662_100030844 3300005457 Bacteria 3756
23 Ga0070681_10004471 3300005458 Bacteria 13326
24 Ga0070679_100001981 3300005530 Bacteria 18383
25 Ga0070679_100027090 3300005530 Bacteria 5636
26 Ga0070684_100000006 3300005535 Bacteria 227715
27 Ga0070684_100006493 3300005535 Bacteria 9057
28 Ga0070665_100046968 3300005548 Bacteria 4334
29 Ga0070704_100013597 3300005549 Bacteria 5058
30 Ga0068857_100025622 3300005577 Bacteria 5193
31 Ga0068857_100027020 3300005577 Bacteria 5063
32 Ga0068857_100049747 3300005577 Bacteria 3718
33 Ga0070702_100023397 3300005615 Bacteria 3282
34 Ga0068859_100000048 3300005617 Bacteria 138664
35 Ga0068859_100015446 3300005617 Bacteria 7670
36 Ga0068863_100037834 3300005841 Bacteria 4592
37 Ga0068863_100044731 3300005841 Bacteria 4201
38 Ga0068858_100055004 3300005842 Bacteria 3679
39 Ga0068858_100058569 3300005842 Bacteria 3562
40 Ga0068860_100057221 3300005843 Bacteria 3706
41 Ga0068862_100010703 3300005844 Bacteria 7574
42 Ga0068862_100023830 3300005844 Bacteria 5130
43 Ga0081455_10001203 3300005937 Bacteria 32430
44 Ga0075364_10011699 3300006051 Bacteria 5338
45 Ga0075367_10001072 3300006178 Bacteria 11300
46 Ga0075367_10004108 3300006178 Bacteria 7054
47 Ga0075366_10009072 3300006195 Bacteria 5546
48 Ga0075366_10009123 3300006195 Bacteria 5533
49 Ga0075428_100014958 3300006844 Bacteria 8623
50 Ga0075428_100019925 3300006844 Bacteria 7428
51 Ga0075430_100003652 3300006846 Bacteria 12918
52 Ga0075430_100021356 3300006846 Bacteria 5503
53 Ga0075431_100006235 3300006847 Bacteria 11846
54 Ga0075431_100010323 3300006847 Bacteria 9384
55 Ga0075431_100040394 3300006847 Bacteria 4808
56 Ga0075434_100001808 3300006871 Bacteria 18502
57 Ga0075429_100003485 3300006880 Bacteria 13421
58 Ga0097620_100000048 3300006931 Bacteria 138664
59 Ga0097620_100015446 3300006931 Bacteria 7670
60 Ga0075435_100010199 3300007076 Bacteria 6863
61 Ga0105240_10000863 3300009093 Bacteria 54696
62 Ga0105240_10001424 3300009093 Bacteria 40938
63 Ga0111539_10009816 3300009094 Bacteria 12081
64 Ga0111539_10048542 3300009094 Bacteria 5067
65 Ga0105247_10022486 3300009101 Bacteria 3797
66 Ga0114129_10005130 3300009147 Bacteria 18435
67 Ga0114129_10018819 3300009147 Bacteria 9835
68 Ga0114129_10069105 3300009147 Bacteria 4924
69 Ga0105248_10009675 3300009177 Bacteria 10621
70 Ga0105248_10039063 3300009177 Bacteria 5315
71 Ga0105237_10020622 3300009545 Bacteria 6791
72 Ga0105237_10028191 3300009545 Bacteria 5723
73 Ga0105249_10002661 3300009553 Bacteria 15448
74 Ga0105239_10032313 3300010375 Bacteria 5752
75 Ga0157370_10008354 3300013104 Bacteria 11166
76 Ga0157370_10027665 3300013104 Bacteria 5589
77 Ga0157369_10048254 3300013105 Bacteria 4620
78 Ga0157374_10043350 3300013296 Bacteria 4156
79 Ga0163162_10003315 3300013306 Bacteria 15407
80 Ga0163162_10006654 3300013306 Bacteria 11207
81 Ga0157372_10029590 3300013307 Bacteria 5982
82 Ga0157372_10056139 3300013307 Bacteria 4400
83 Ga0157375_10079210 3300013308 Bacteria 3320
84 Ga0163163_10028158 3300014325 Bacteria 5391
85 Ga0157380_10002061 3300014326 Bacteria 13453
86 Ga0157380_10002970 3300014326 Bacteria 11540
87 Ga0157380_10029967 3300014326 Bacteria 4163
88 Ga0157380_10031850 3300014326 Bacteria 4050
89 Ga0157377_10013195 3300014745 Bacteria 4177
90 Ga0157376_10014268 3300014969 Bacteria 5958
91 Ga0207688_10018160 3300025901 Bacteria 3828
92 Ga0207645_10001540 3300025907 Bacteria 18848
93 Ga0207695_10009126 3300025913 Bacteria 12311
94 Ga0207695_10009246 3300025913 Bacteria 12214
95 Ga0207671_10011240 3300025914 Bacteria 7304
96 Ga0207662_10002806 3300025918 Bacteria 8808
97 Ga0207657_10016480 3300025919 Bacteria 7125
98 Ga0207681_10016099 3300025923 Bacteria 4671
99 Ga0207659_10004685 3300025926 Bacteria 8284
100 Ga0207659_10016644 3300025926 Bacteria 4790
101 Ga0207700_10020177 3300025928 Bacteria 4519
102 Ga0207700_10033913 3300025928 Bacteria 3658
103 Ga0207706_10004360 3300025933 Bacteria 13294
104 Ga0207669_10007343 3300025937 Bacteria 5090
105 Ga0207691_10003469 3300025940 Bacteria 15353
106 Ga0207691_10006381 3300025940 Bacteria 11391
107 Ga0207691_10018039 3300025940 Bacteria 6683
108 Ga0207689_10002093 3300025942 Bacteria 18826
109 Ga0207689_10008057 3300025942 Bacteria 9196
110 Ga0207689_10021030 3300025942 Bacteria 5485
111 Ga0207661_10000005 3300025944 Bacteria 557888
112 Ga0207661_10003768 3300025944 Bacteria 10563
113 Ga0207661_10057385 3300025944 Bacteria 3130
114 Ga0207679_10003849 3300025945 Bacteria 9307
115 Ga0207679_10039938 3300025945 Bacteria 3355
116 Ga0207712_10002331 3300025961 Bacteria 12324
117 Ga0207712_10022606 3300025961 Bacteria 4143
118 Ga0207677_10015548 3300026023 Bacteria 4480
119 Ga0207678_10033332 3300026067 Bacteria 4488
120 Ga0207641_10038610 3300026088 Bacteria 3992
121 Ga0207676_10031256 3300026095 Bacteria 4003
122 Ga0207674_10003447 3300026116 Bacteria 19340
123 Ga0207674_10006527 3300026116 Bacteria 13713
124 Ga0207674_10014808 3300026116 Bacteria 8602
125 Ga0207675_100006592 3300026118 Bacteria 10984
126 Ga0207428_10000555 3300027907 Bacteria 44135
127 Ga0207428_10014279 3300027907 Bacteria 6911
128 Ga0268265_10016071 3300028380 Bacteria 5134
129 Ga0307408_100017207 3300031548 Bacteria 4836
130 Ga0307508_10045859 3300031616 Bacteria 3904
131 Ga0307416_100031156 3300032002 Bacteria 4011
132 Ga0373943_0018591 3300035170 Bacteria 3194
133 Ga0373931_0001968 3300035691 Bacteria 9031
134 Ga0373927_0000683 3300035695 Bacteria 25847
135 Ga0373927_0044510 3300035695 Bacteria 2872
136 Ga0373925_0000564 3300037068 Bacteria 36366
137 Ga0395900_0020295 3300037418 Bacteria 6782
138 Ga0395905_0021376 3300037471 Bacteria 6120
139 Ga0395901_0009525 3300038443 Bacteria 9856
140 Ga0436365_1104027 3300039437 Bacteria 12732
141 Ga0453684_0038669 3300044712 Bacteria 6517
142 Ga0495629_0001600 3300046459 Bacteria 17805
143 Ga0495629_0011662 3300046459 Bacteria 6377
144 Ga0495651_0002085 3300046462 Bacteria 15405
145 Ga0495651_0023432 3300046462 Bacteria 4799
146 Ga0495651_0030830 3300046462 Bacteria 4181
147 Ga0495582_0007629 3300046473 Bacteria 5981
148 Ga0495664_0011682 3300046477 Bacteria 4956
149 Ga0495594_0008515 3300046499 Bacteria 5288
150 Ga0495594_0011786 3300046499 Bacteria 4545
151 Ga0495628_0021680 3300046516 Bacteria 5281
152 Ga0495628_0054748 3300046516 Bacteria 3144
153 Ga0495643_0002100 3300046522 Bacteria 16498
154 Ga0495665_0000210 3300046531 Bacteria 29881
155 Ga0495665_0021442 3300046531 Bacteria 3471
156 Ga0495640_0017457 3300046533 Bacteria 5350
157 Ga0495586_0011963 3300046535 Bacteria 4610
158 Ga0495587_0005626 3300046536 Bacteria 8173
159 Ga0495587_0018628 3300046536 Bacteria 4304
160 Ga0495645_0001141 3300046543 Bacteria 18004
161 Ga0495645_0009569 3300046543 Bacteria 6778
162 Ga0495667_0000670 3300046559 Bacteria 21917
163 Ga0495667_0009772 3300046559 Bacteria 6500
164 Ga0495599_0012418 3300046678 Bacteria 5249
165 Ga0495623_0016983 3300046679 Bacteria 4701
166 Ga0495623_0023426 3300046679 Bacteria 3985
167 Ga0495613_0029499 3300046689 Bacteria 4079
168 Ga0495604_0002200 3300047317 Bacteria 15628
169 Ga0495604_0050749 3300047317 Bacteria 3220
170 Ga0495674_0005787 3300047319 Bacteria 11853
171 Ga0495674_0008093 3300047319 Bacteria 10032
172 Ga0495675_0010279 3300047444 Bacteria 5846
173 Ga0495684_0016467 3300047471 Bacteria 5693
174 Ga0495684_0026037 3300047471 Bacteria 4496
175 Ga0495602_0017350 3300048088 Bacteria 7218
176 Ga0495602_0027446 3300048088 Bacteria 5470
177 Ga0496112_0009246 3300048915 Bacteria 8861
178 Ga0501071_0004565 3300049587 Bacteria 8781
179 Ga0501072_0014611 3300049588 Bacteria 6019
180 Ga0501072_0070254 3300049588 Bacteria 2765
181 Ga0501075_0024381 3300049591 Bacteria 4435
182 Ga0501076_0006890 3300049592 Bacteria 8257
183 nmdc:mga0yw44_6941_c1 3300050492 Bacteria 5523
184 nmdc:mga0k408_5907_c1 3300050493 Bacteria 6528
185 nmdc:mga05p37_19946_c1 3300050507 Bacteria 8111
186 nmdc:mga05p37_98_c1 3300050507 Bacteria 78110
187 nmdc:mga09592_5073_c1 3300050508 Bacteria 10684
188 nmdc:mga0qj67_26576_c1 3300050509 Bacteria 4480
189 nmdc:mga06r32_72928_c1 3300050510 Bacteria 3324
190 nmdc:mga08y16_13827_c1 3300050511 Bacteria 8496
191 nmdc:mga08y16_2710_c1 3300050511 Bacteria 18172
192 nmdc:mga08y16_52574_c1 3300050511 Bacteria 4262
193 nmdc:mga08y16_73_c1 3300050511 Bacteria 84090
194 nmdc:mga0n895_32736_c1 3300050512 Bacteria 4991
195 nmdc:mga0n895_44695_c1 3300050512 Bacteria 4319
196 nmdc:mga0a205_10438_c1 3300050515 Bacteria 8531
197 nmdc:mga0a205_91035_c1 3300050515 Bacteria 2947
198 Ga0590071_000487 3300059421 Bacteria 11589
199 Ga0590075_000877 3300059424 Bacteria 7882
200 Ga0501082_0005171 3300060353 Bacteria 11352
201 Ga0081539_10007554
202 Ga0065707_10003384
203 Ga0070683_100000001
204 Ga0070683_100004599
205 Ga0070683_100009785
206 Ga0070683_100050824
207 Ga0070683_100068972
208 Ga0070670_100001291
209 Ga0068869_100027241
210 Ga0070666_10014392
211 Ga0070687_100010713
212 Ga0070669_100014195
213 Ga0070675_100017914
214 Ga0070671_100012800
215 Ga0070673_100009022
216 Ga0070713_100001406
217 Ga0070713_100031870
218 Ga0070701_10008848
219 Ga0070700_100023555
220 Ga0070708_100000082
221 Ga0070662_100009376
222 Ga0070662_100030844
223 Ga0070681_10004471
224 Ga0070679_100001981
225 Ga0070679_100027090
226 Ga0070684_100000006
227 Ga0070684_100006493
228 Ga0070665_100046968
229 Ga0070704_100013597
230 Ga0068857_100025622
231 Ga0068857_100027020
232 Ga0068857_100049747
233 Ga0070702_100023397
234 Ga0068859_100000048
235 Ga0068859_100015446
236 Ga0068863_100037834
237 Ga0068863_100044731
238 Ga0068858_100055004
239 Ga0068858_100058569
240 Ga0068860_100057221
241 Ga0068862_100010703
242 Ga0068862_100023830
243 Ga0081455_10001203
244 Ga0075364_10011699
245 Ga0075367_10001072
246 Ga0075367_10004108
247 Ga0075366_10009072
248 Ga0075366_10009123
249 Ga0075428_100014958
250 Ga0075428_100019925
251 Ga0075430_100003652
252 Ga0075430_100021356
253 Ga0075431_100006235
254 Ga0075431_100010323
255 Ga0075431_100040394
256 Ga0075434_100001808
257 Ga0075429_100003485
258 Ga0097620_100000048
259 Ga0097620_100015446
260 Ga0075435_100010199
261 Ga0105240_10000863
262 Ga0105240_10001424
263 Ga0111539_10009816
264 Ga0111539_10048542
265 Ga0105247_10022486
266 Ga0114129_10005130
267 Ga0114129_10018819
268 Ga0114129_10069105
269 Ga0105248_10009675
270 Ga0105248_10039063
271 Ga0105237_10020622
272 Ga0105237_10028191
273 Ga0105249_10002661
274 Ga0105239_10032313
275 Ga0157370_10008354
276 Ga0157370_10027665
277 Ga0157369_10048254
278 Ga0157374_10043350
279 Ga0163162_10003315
280 Ga0163162_10006654
281 Ga0157372_10029590
282 Ga0157372_10056139
283 Ga0157375_10079210
284 Ga0163163_10028158
285 Ga0157380_10002061
286 Ga0157380_10002970
287 Ga0157380_10029967
288 Ga0157380_10031850
289 Ga0157377_10013195
290 Ga0157376_10014268
291 Ga0207688_10018160
292 Ga0207645_10001540
293 Ga0207695_10009126
294 Ga0207695_10009246
295 Ga0207671_10011240
296 Ga0207662_10002806
297 Ga0207657_10016480
298 Ga0207681_10016099
299 Ga0207659_10004685
300 Ga0207659_10016644
301 Ga0207700_10020177
302 Ga0207700_10033913
303 Ga0207706_10004360
304 Ga0207669_10007343
305 Ga0207691_10003469
306 Ga0207691_10006381
307 Ga0207691_10018039
308 Ga0207689_10002093
309 Ga0207689_10008057
310 Ga0207689_10021030
311 Ga0207661_10000005
312 Ga0207661_10003768
313 Ga0207661_10057385
314 Ga0207679_10003849
315 Ga0207679_10039938
316 Ga0207712_10002331
317 Ga0207712_10022606
318 Ga0207677_10015548
319 Ga0207678_10033332
320 Ga0207641_10038610
321 Ga0207676_10031256
322 Ga0207674_10003447
323 Ga0207674_10006527
324 Ga0207674_10014808
325 Ga0207675_100006592
326 Ga0207428_10000555
327 Ga0207428_10014279
328 Ga0268265_10016071
329 Ga0307408_100017207
330 Ga0307508_10045859
331 Ga0307416_100031156
332 Ga0373943_0018591
333 Ga0373931_0001968
334 Ga0373927_0000683
335 Ga0373927_0044510
336 Ga0373925_0000564
337 Ga0395900_0020295
338 Ga0395905_0021376
339 Ga0395901_0009525
340 Ga0436365_1104027
341 Ga0453684_0038669
342 Ga0495629_0001600
343 Ga0495629_0011662
344 Ga0495651_0002085
345 Ga0495651_0023432
346 Ga0495651_0030830
347 Ga0495582_0007629
348 Ga0495664_0011682
349 Ga0495594_0008515
350 Ga0495594_0011786
351 Ga0495628_0021680
352 Ga0495628_0054748
353 Ga0495643_0002100
354 Ga0495665_0000210
355 Ga0495665_0021442
356 Ga0495640_0017457
357 Ga0495586_0011963
358 Ga0495587_0005626
359 Ga0495587_0018628
360 Ga0495645_0001141
361 Ga0495645_0009569
362 Ga0495667_0000670
363 Ga0495667_0009772
364 Ga0495599_0012418
365 Ga0495623_0016983
366 Ga0495623_0023426
367 Ga0495613_0029499
368 Ga0495604_0002200
369 Ga0495604_0050749
370 Ga0495674_0005787
371 Ga0495674_0008093
372 Ga0495675_0010279
373 Ga0495684_0016467
374 Ga0495684_0026037
375 Ga0495602_0017350
376 Ga0495602_0027446
377 Ga0496112_0009246
378 Ga0501071_0004565
379 Ga0501072_0014611
380 Ga0501072_0070254
381 Ga0501075_0024381
382 Ga0501076_0006890
383 nmdc:mga0yw44_6941_c1
384 nmdc:mga0k408_5907_c1
385 nmdc:mga05p37_19946_c1
386 nmdc:mga05p37_98_c1
387 nmdc:mga09592_5073_c1
388 nmdc:mga0qj67_26576_c1
389 nmdc:mga06r32_72928_c1
390 nmdc:mga08y16_13827_c1
391 nmdc:mga08y16_2710_c1
392 nmdc:mga08y16_52574_c1
393 nmdc:mga08y16_73_c1
394 nmdc:mga0n895_32736_c1
395 nmdc:mga0n895_44695_c1
396 nmdc:mga0a205_10438_c1
397 nmdc:mga0a205_91035_c1
398 Ga0590071_000487
399 Ga0590075_000877
400 Ga0501082_0005171

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17760

UvrA_inter

UvrA interaction domain

171

279

0.98

PF17755

UvrA_DNA-bind

UvrA DNA-binding domain

333

441

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ux8-assembly1.cif.gz_A crystal structure of uvra 0.9277 25 974
3ux8-assembly1.cif.gz_A crystal structure of uvra 0.904 25 974
6n9l-assembly1.cif.gz_A crystal structure of t. maritima uvra d117-399 with adp 0.9018 25 974
7sh1-assembly1.cif.gz_B-2 class ii uvra protein - ecm16 0.8996 21 974
6n9l-assembly1.cif.gz_A crystal structure of t. maritima uvra d117-399 with adp 0.8991 25 974
ID Description Score Start End Superfamily
2r6fB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9131 26 622 3.40.50.300
2vf8A03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9116 638 975 3.40.50.300
2vf8A03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9086 638 975 3.40.50.300
2r6fB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8991 26 622 3.40.50.300
2ygrF03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8826 631 970 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A832RI27-F1-model_v4 ATP-binding cassette domain-containing protein 0.974 811 974 GO:0003677
GO:0004518
GO:0005524
GO:0005737
GO:0006281
GO:0016887
AF-A0A381NJB2-F1-model_v4 ABC transporter domain-containing protein 0.9718 821 974 GO:0003677
GO:0004518
GO:0005524
GO:0005737
GO:0006281
GO:0016887
AF-A0A259RLN3-F1-model_v4 UvrABC system protein A (Excinuclease ABC subunit A) 0.9682 818 974 GO:0003677
GO:0004518
GO:0005524
GO:0005737
GO:0006281
GO:0016887
AF-A0A3D3ZHI0-F1-model_v4 UvrABC system protein A (Excinuclease ABC subunit A) 0.9607 809 973 GO:0003677
GO:0004518
GO:0005524
GO:0005737
GO:0006281
GO:0016887
AF-C0FW84-F1-model_v4 UvrABC system protein A (Excinuclease ABC subunit A) 0.9585 824 975 GO:0003677
GO:0004518
GO:0005524
GO:0005737
GO:0006281
GO:0016887

Map