F306587

General Info

Members Datasets Scaffolds Average Seq Length
200 134 400 379

Family's Representative Sequence

Representative Sequence 3300003203|JGI25406J46586_10008402|JGI25406J46586_100084023
Length 384
Sequence MTVTAPKGFRAAGVTAGLKASGGRDVALVVNDGPRDAAASVFTANRCKANPVLWSERAAADGRLRAVVLNSGGANCYTGPVGFATTHATAEQVAAGLDCSALDVLVCSTGLIGPRLDEPLLRTGVDAALGALAPDGGHAAAEAIMTTDTVAKTVELTAPDGWTVGGIAKGAGMLAPGLATMLVVLTTDADVDAATCDAALRAATRVTFDRLDSDGCQSTNDTVALLASGASGVVPDRGEFFAAVHRASLDLTMQLLADAEGADHEITIEVRNAATEDDAVEVGRAVARSNLFKAAVFGNDPNWGRILAAVGTTSAAFDPADLDVAINDVWVCRGGGPGENPDGVDLKPRQVSVAIDLKAGGRTATIWTNDLTHAYVHENSAYSS

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
18 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
21 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
25 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
40 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
41 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
42 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
43 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
46 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
47 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
48 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
49 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
50 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
51 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
54 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
55 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
56 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
57 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
58 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
59 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
60 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
61 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
64 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
65 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
66 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
67 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
68 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
69 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
70 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
71 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
72 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
73 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
74 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
75 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
76 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
77 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
78 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
79 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
91 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
92 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
95 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
96 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
97 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
98 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
101 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
102 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
103 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
104 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
107 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
108 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
109 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
110 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
111 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
112 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
113 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
114 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
115 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
116 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
117 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
118 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
121 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
122 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
123 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
124 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
125 2643221576 Nocardioides sp. Root614 Isolate Unclassified
126 2643221590 Nocardioides sp. Root682 Isolate Unclassified
127 2643221615 Nocardioides sp. Root224 Isolate Unclassified
128 2643221641 Nocardioides sp. Root122 Isolate Unclassified
129 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
130 2739367898 Nocardioides sp. CF479 Isolate Unclassified
131 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
132 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
133 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
134 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 94.5
Metatranscriptomes 0
Isolates 5.5

Biome Distribution

Category Percentage (%)
Aerial Root 1
Bulb 0
Endosphere 15
Nodule 0.5
Rhizoplane 6.5
Rhizosphere 71
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10008402 3300003203 Bacteria 4679
2 JGI24735J21928_10009738 3300002067 Bacteria 3078
3 JGI25406J46586_10014525 3300003203 Bacteria 3345
4 Ga0070658_10041312 3300005327 Bacteria 3720
5 Ga0070683_100063766 3300005329 Bacteria 3429
6 Ga0070683_100195222 3300005329 Bacteria 1922
7 Ga0070683_100213195 3300005329 Bacteria 1835
8 Ga0070680_100195289 3300005336 Bacteria 1706
9 Ga0070660_100003305 3300005339 Bacteria 11084
10 Ga0070714_100003821 3300005435 Bacteria 11312
11 Ga0070700_100074062 3300005441 Bacteria 2181
12 Ga0070663_100053475 3300005455 Bacteria 2883
13 Ga0070698_100001494 3300005471 Bacteria 25962
14 Ga0070696_100000835 3300005546 Bacteria 19877
15 Ga0070665_100009827 3300005548 Bacteria 9671
16 Ga0068860_100001541 3300005843 Bacteria 24832
17 Ga0081455_10001891 3300005937 Bacteria 25187
18 Ga0081539_10003164 3300005985 Bacteria 20878
19 Ga0081539_10018128 3300005985 Bacteria 4902
20 Ga0081539_10040696 3300005985 Bacteria 2726
21 Ga0075365_10000618 3300006038 Bacteria 14004
22 Ga0075365_10061044 3300006038 Bacteria 2516
23 Ga0075368_10001765 3300006042 Bacteria 6960
24 Ga0075368_10012837 3300006042 Bacteria 3068
25 Ga0075363_100046764 3300006048 Bacteria 2297
26 Ga0075364_10030417 3300006051 Bacteria 3465
27 Ga0075367_10010052 3300006178 Bacteria 4961
28 Ga0075367_10031633 3300006178 Bacteria 3039
29 Ga0075367_10135311 3300006178 Bacteria 1524
30 Ga0075370_10010424 3300006353 Bacteria 4860
31 Ga0075434_100380660 3300006871 Bacteria 1432
32 Ga0105245_10232955 3300009098 Bacteria 1782
33 Ga0163161_10069206 3300017792 Bacteria 2580
34 Ga0207647_10114434 3300025904 Bacteria 1594
35 Ga0207643_10068063 3300025908 Bacteria 2045
36 Ga0207705_10090046 3300025909 Bacteria 2246
37 Ga0207657_10007406 3300025919 Bacteria 11252
38 Ga0207652_10105399 3300025921 Bacteria 2495
39 Ga0207687_10195025 3300025927 Bacteria 1579
40 Ga0207690_10005350 3300025932 Bacteria 7566
41 Ga0207686_10179421 3300025934 Bacteria 1501
42 Ga0207678_10054792 3300026067 Bacteria 3435
43 Ga0207675_100195914 3300026118 Bacteria 1939
44 Ga0207698_10223744 3300026142 Bacteria 1703
45 Ga0209813_10000804 3300027866 Bacteria 7117
46 Ga0209813_10022654 3300027866 Bacteria 1779
47 Ga0268266_10019422 3300028379 Bacteria 5787
48 Ga0268264_10001453 3300028381 Bacteria 22147
49 Ga0307515_10209736 3300028794 Bacteria 1796
50 Ga0307513_10000483 3300031456 Bacteria 57234
51 Ga0307516_10196608 3300031730 Bacteria 1739
52 Ga0307413_10013799 3300031824 Bacteria 4079
53 Ga0307412_10020179 3300031911 Bacteria 4052
54 Ga0307409_100015002 3300031995 Bacteria 5066
55 Ga0307409_100248415 3300031995 Bacteria 1625
56 Ga0307416_100107302 3300032002 Bacteria 2450
57 Ga0307411_10064784 3300032005 Bacteria 2448
58 Ga0307415_100001865 3300032126 Bacteria 10337
59 Ga0307415_100199855 3300032126 Bacteria 1585
60 Ga0395899_0200721 3300037312 Bacteria 1391
61 Ga0395900_0071170 3300037418 Bacteria 3575
62 Ga0395898_0053418 3300037466 Bacteria 3946
63 Ga0395898_0581220 3300037466 Bacteria 1063
64 Ga0436364_1428798 3300037853 Bacteria 3501
65 Ga0395901_0015285 3300038443 Bacteria 7810
66 Ga0395901_0079722 3300038443 Bacteria 3419
67 Ga0439461_0004596 3300041410 Bacteria 2313
68 Ga0451841_1308527 3300041498 Bacteria 1652
69 Ga0439464_0012262 3300042439 Bacteria 2280
70 Ga0466965_0034176 3300044683 Bacteria 2487
71 Ga0466966_0020095 3300044684 Bacteria 4394
72 Ga0466966_0033565 3300044684 Bacteria 3323
73 Ga0466961_0152123 3300044693 Bacteria 1444
74 Ga0466963_0017220 3300044694 Bacteria 4502
75 Ga0466963_0071527 3300044694 Bacteria 2335
76 Ga0466964_0008241 3300044706 Bacteria 3910
77 Ga0466970_0005927 3300044765 Bacteria 6091
78 Ga0466970_0015537 3300044765 Bacteria 3918
79 Ga0466957_0041847 3300044842 Bacteria 2770
80 Ga0466957_0063409 3300044842 Bacteria 2271
81 Ga0466960_0019826 3300044901 Bacteria 2969
82 Ga0466960_0036862 3300044901 Bacteria 2292
83 Ga0466960_0049276 3300044901 Bacteria 2027
84 Ga0466958_0028588 3300045836 Bacteria 3306
85 Ga0466958_0041609 3300045836 Bacteria 2764
86 Ga0466967_0088026 3300045976 Bacteria 2817
87 Ga0466967_0093945 3300045976 Bacteria 2730
88 Ga0466967_0129738 3300045976 Bacteria 2339
89 Ga0466967_0176320 3300045976 Bacteria 2013
90 Ga0466967_0228551 3300045976 Bacteria 1770
91 Ga0466967_0260325 3300045976 Bacteria 1660
92 Ga0466967_0326726 3300045976 Bacteria 1480
93 Ga0466967_0332541 3300045976 Bacteria 1467
94 Ga0495629_0102952 3300046459 Bacteria 1992
95 Ga0495638_0094756 3300046460 Bacteria 1794
96 Ga0495653_0108593 3300046463 Bacteria 1998
97 Ga0496103_0041909 3300048906 Bacteria 2815
98 Ga0496104_0020447 3300048907 Bacteria 6068
99 Ga0496105_0004428 3300048908 Bacteria 10575
100 Ga0496106_0288226 3300048909 Bacteria 1316
101 Ga0496107_0069994 3300048910 Bacteria 2547
102 Ga0496107_0090923 3300048910 Bacteria 2230
103 Ga0496109_0055797 3300048912 Bacteria 3604
104 Ga0496109_0085071 3300048912 Bacteria 2919
105 Ga0496109_0277119 3300048912 Bacteria 1580
106 Ga0496111_0006814 3300048914 Bacteria 7451
107 Ga0496113_0115454 3300048916 Bacteria 2094
108 Ga0496114_0055780 3300048917 Bacteria 3296
109 Ga0496115_0006420 3300048918 Bacteria 8614
110 Ga0501031_0025987 3300049568 Bacteria 3820
111 Ga0501031_0031312 3300049568 Bacteria 3470
112 Ga0501031_0038825 3300049568 Bacteria 3106
113 Ga0501031_0040543 3300049568 Bacteria 3040
114 Ga0501031_0123196 3300049568 Bacteria 1693
115 Ga0501032_0026361 3300049569 Bacteria 3999
116 Ga0501036_0012577 3300049572 Bacteria 7018
117 Ga0501036_0066359 3300049572 Bacteria 3053
118 Ga0501036_0066361 3300049572 Bacteria 3053
119 Ga0501036_0177069 3300049572 Bacteria 1796
120 Ga0501037_0019625 3300049573 Bacteria 4988
121 Ga0501038_0072469 3300049574 Bacteria 2919
122 Ga0501038_0074521 3300049574 Bacteria 2871
123 Ga0501039_0003865 3300049575 Bacteria 11247
124 Ga0501039_0042291 3300049575 Bacteria 3520
125 Ga0501040_0026504 3300049576 Bacteria 3899
126 Ga0501040_0028043 3300049576 Bacteria 3793
127 Ga0501040_0180594 3300049576 Bacteria 1496
128 Ga0501041_0021412 3300049577 Bacteria 3874
129 Ga0501041_0076459 3300049577 Bacteria 2060
130 Ga0501042_0002213 3300049578 Bacteria 11858
131 Ga0501042_0038377 3300049578 Bacteria 3402
132 Ga0501043_0053634 3300049579 Bacteria 3166
133 Ga0501043_0184517 3300049579 Bacteria 1625
134 Ga0501048_0064271 3300049582 Bacteria 2595
135 Ga0501067_0005747 3300049583 Bacteria 6883
136 Ga0501067_0042321 3300049583 Bacteria 2529
137 Ga0501068_0030350 3300049584 Bacteria 3206
138 Ga0501068_0062393 3300049584 Bacteria 2266
139 Ga0501069_0020465 3300049585 Bacteria 3585
140 Ga0501069_0038503 3300049585 Bacteria 2640
141 Ga0501069_0125747 3300049585 Bacteria 1466
142 Ga0501070_0026975 3300049586 Bacteria 4817
143 Ga0501071_0011397 3300049587 Bacteria 5989
144 Ga0501071_0174767 3300049587 Bacteria 1608
145 Ga0501072_0008956 3300049588 Bacteria 7608
146 Ga0501072_0255422 3300049588 Bacteria 1395
147 Ga0501073_0148367 3300049589 Bacteria 1625
148 Ga0501074_0023083 3300049590 Bacteria 4524
149 Ga0501075_0008760 3300049591 Bacteria 7052
150 Ga0501075_0284109 3300049591 Bacteria 1261
151 Ga0501076_0004208 3300049592 Bacteria 10190
152 Ga0501076_0060741 3300049592 Bacteria 3007
153 Ga0501076_0191744 3300049592 Bacteria 1668
154 Ga0501077_0028073 3300049593 Bacteria 3576
155 Ga0501077_0149123 3300049593 Bacteria 1484
156 Ga0501079_0102974 3300049741 Bacteria 2214
157 Ga0501080_0261368 3300049742 Bacteria 1577
158 Ga0501081_0135312 3300049743 Bacteria 1764
159 Ga0501035_0007420 3300049822 Bacteria 10239
160 Ga0501044_0159948 3300049823 Bacteria 2230
161 Ga0501045_0071558 3300049824 Bacteria 2552
162 Ga0501045_0086527 3300049824 Bacteria 2313
163 nmdc:mga03n38_14845_c1 3300050490 Bacteria 2997
164 nmdc:mga00v17_69054_c1 3300050491 Bacteria 2186
165 nmdc:mga00v17_81214_c1 3300050491 Bacteria 2024
166 nmdc:mga00v17_92459_c1 3300050491 Bacteria 1902
167 nmdc:mga0yw44_22401_c1 3300050492 Bacteria 3543
168 nmdc:mga0yw44_66895_c1 3300050492 Bacteria 2219
169 nmdc:mga06z11_10804_c1 3300050494 Bacteria 3907
170 nmdc:mga06z11_146528_c1 3300050494 Bacteria 1339
171 nmdc:mga04h51_19224_c1 3300050495 Bacteria 2023
172 nmdc:mga04h51_2416_c1 3300050495 Bacteria 4429
173 nmdc:mga04h51_25318_c1 3300050495 Bacteria 1825
174 nmdc:mga07m45_50587_c1 3300050496 Bacteria 2342
175 nmdc:mga0n895_367606_c1 3300050512 Bacteria 1456
176 Ga0500556_0000981 3300053104 Bacteria 15108
177 Ga0500593_000172 3300053117 Bacteria 26252
178 Ga0500568_0058802 3300053139 Bacteria 1493
179 Ga0500573_0018007 3300053140 Bacteria 4025
180 Ga0500604_0008484 3300053151 Bacteria 2726
181 Ga0500616_0015225 3300053153 Bacteria 4402
182 Ga0501084_0011351 3300054114 Bacteria 7377
183 Ga0501084_0103204 3300054114 Bacteria 2395
184 Ga0501082_0029304 3300060353 Bacteria 4741
185 Ga0501082_0071920 3300060353 Bacteria 2979
186 Ga0466962_0027470 3300061719 Bacteria 2731
187 Ga0466962_0098287 3300061719 Bacteria 1405
188 Ga0530510_0031738 3300061734 Bacteria 3798
189 Ga0530510_0036945 3300061734 Bacteria 3520
190 2515851909 2515154155 Bacteria 7985436
191 2643888771 2643221576 Bacteria 5214352
192 2643957826 2643221590 Bacteria 5214697
193 2644093986 2643221615 Bacteria 5487866
194 2644232312 2643221641 Bacteria 4490190
195 2644323830 2643221657 Bacteria 5490246
196 2740169267 2739367898 Bacteria 4367674
197 2848553045 2848551377 Bacteria 3720646
198 2984580008 2984576629 Bacteria 4248407
199 2990260789 2990256926 Bacteria 4252839
200 8054613030 8054609563 Bacteria 5170090
201 JGI25406J46586_10008402
202 JGI24735J21928_10009738
203 JGI25406J46586_10014525
204 Ga0070658_10041312
205 Ga0070683_100063766
206 Ga0070683_100195222
207 Ga0070683_100213195
208 Ga0070680_100195289
209 Ga0070660_100003305
210 Ga0070714_100003821
211 Ga0070700_100074062
212 Ga0070663_100053475
213 Ga0070698_100001494
214 Ga0070696_100000835
215 Ga0070665_100009827
216 Ga0068860_100001541
217 Ga0081455_10001891
218 Ga0081539_10003164
219 Ga0081539_10018128
220 Ga0081539_10040696
221 Ga0075365_10000618
222 Ga0075365_10061044
223 Ga0075368_10001765
224 Ga0075368_10012837
225 Ga0075363_100046764
226 Ga0075364_10030417
227 Ga0075367_10010052
228 Ga0075367_10031633
229 Ga0075367_10135311
230 Ga0075370_10010424
231 Ga0075434_100380660
232 Ga0105245_10232955
233 Ga0163161_10069206
234 Ga0207647_10114434
235 Ga0207643_10068063
236 Ga0207705_10090046
237 Ga0207657_10007406
238 Ga0207652_10105399
239 Ga0207687_10195025
240 Ga0207690_10005350
241 Ga0207686_10179421
242 Ga0207678_10054792
243 Ga0207675_100195914
244 Ga0207698_10223744
245 Ga0209813_10000804
246 Ga0209813_10022654
247 Ga0268266_10019422
248 Ga0268264_10001453
249 Ga0307515_10209736
250 Ga0307513_10000483
251 Ga0307516_10196608
252 Ga0307413_10013799
253 Ga0307412_10020179
254 Ga0307409_100015002
255 Ga0307409_100248415
256 Ga0307416_100107302
257 Ga0307411_10064784
258 Ga0307415_100001865
259 Ga0307415_100199855
260 Ga0395899_0200721
261 Ga0395900_0071170
262 Ga0395898_0053418
263 Ga0395898_0581220
264 Ga0436364_1428798
265 Ga0395901_0015285
266 Ga0395901_0079722
267 Ga0439461_0004596
268 Ga0451841_1308527
269 Ga0439464_0012262
270 Ga0466965_0034176
271 Ga0466966_0020095
272 Ga0466966_0033565
273 Ga0466961_0152123
274 Ga0466963_0017220
275 Ga0466963_0071527
276 Ga0466964_0008241
277 Ga0466970_0005927
278 Ga0466970_0015537
279 Ga0466957_0041847
280 Ga0466957_0063409
281 Ga0466960_0019826
282 Ga0466960_0036862
283 Ga0466960_0049276
284 Ga0466958_0028588
285 Ga0466958_0041609
286 Ga0466967_0088026
287 Ga0466967_0093945
288 Ga0466967_0129738
289 Ga0466967_0176320
290 Ga0466967_0228551
291 Ga0466967_0260325
292 Ga0466967_0326726
293 Ga0466967_0332541
294 Ga0495629_0102952
295 Ga0495638_0094756
296 Ga0495653_0108593
297 Ga0496103_0041909
298 Ga0496104_0020447
299 Ga0496105_0004428
300 Ga0496106_0288226
301 Ga0496107_0069994
302 Ga0496107_0090923
303 Ga0496109_0055797
304 Ga0496109_0085071
305 Ga0496109_0277119
306 Ga0496111_0006814
307 Ga0496113_0115454
308 Ga0496114_0055780
309 Ga0496115_0006420
310 Ga0501031_0025987
311 Ga0501031_0031312
312 Ga0501031_0038825
313 Ga0501031_0040543
314 Ga0501031_0123196
315 Ga0501032_0026361
316 Ga0501036_0012577
317 Ga0501036_0066359
318 Ga0501036_0066361
319 Ga0501036_0177069
320 Ga0501037_0019625
321 Ga0501038_0072469
322 Ga0501038_0074521
323 Ga0501039_0003865
324 Ga0501039_0042291
325 Ga0501040_0026504
326 Ga0501040_0028043
327 Ga0501040_0180594
328 Ga0501041_0021412
329 Ga0501041_0076459
330 Ga0501042_0002213
331 Ga0501042_0038377
332 Ga0501043_0053634
333 Ga0501043_0184517
334 Ga0501048_0064271
335 Ga0501067_0005747
336 Ga0501067_0042321
337 Ga0501068_0030350
338 Ga0501068_0062393
339 Ga0501069_0020465
340 Ga0501069_0038503
341 Ga0501069_0125747
342 Ga0501070_0026975
343 Ga0501071_0011397
344 Ga0501071_0174767
345 Ga0501072_0008956
346 Ga0501072_0255422
347 Ga0501073_0148367
348 Ga0501074_0023083
349 Ga0501075_0008760
350 Ga0501075_0284109
351 Ga0501076_0004208
352 Ga0501076_0060741
353 Ga0501076_0191744
354 Ga0501077_0028073
355 Ga0501077_0149123
356 Ga0501079_0102974
357 Ga0501080_0261368
358 Ga0501081_0135312
359 Ga0501035_0007420
360 Ga0501044_0159948
361 Ga0501045_0071558
362 Ga0501045_0086527
363 nmdc:mga03n38_14845_c1
364 nmdc:mga00v17_69054_c1
365 nmdc:mga00v17_81214_c1
366 nmdc:mga00v17_92459_c1
367 nmdc:mga0yw44_22401_c1
368 nmdc:mga0yw44_66895_c1
369 nmdc:mga06z11_10804_c1
370 nmdc:mga06z11_146528_c1
371 nmdc:mga04h51_19224_c1
372 nmdc:mga04h51_2416_c1
373 nmdc:mga04h51_25318_c1
374 nmdc:mga07m45_50587_c1
375 nmdc:mga0n895_367606_c1
376 Ga0500556_0000981
377 Ga0500593_000172
378 Ga0500568_0058802
379 Ga0500573_0018007
380 Ga0500604_0008484
381 Ga0500616_0015225
382 Ga0501084_0011351
383 Ga0501084_0103204
384 Ga0501082_0029304
385 Ga0501082_0071920
386 Ga0466962_0027470
387 Ga0466962_0098287
388 Ga0530510_0031738
389 Ga0530510_0036945
390 2515851909
391 2643888771
392 2643957826
393 2644093986
394 2644232312
395 2644323830
396 2740169267
397 2848553045
398 2984580008
399 2990260789
400 8054613030

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01960

ArgJ

ArgJ family

10

384

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3it6-assembly1.cif.gz_C the crystal structure of ornithine acetyltransferase complexed with ornithine from mycobacterium tuberculosis (rv1653) at 2.4 a 0.9474 2 175
3it4-assembly1.cif.gz_B the crystal structure of ornithine acetyltransferase from mycobacterium tuberculosis (rv1653) at 1.7 a 0.9093 183 372
3it4-assembly1.cif.gz_D the crystal structure of ornithine acetyltransferase from mycobacterium tuberculosis (rv1653) at 1.7 a 0.8911 183 372
1vra-assembly1.cif.gz_A crystal structure of arginine biosynthesis bifunctional protein argj (10175521) from bacillus halodurans at 2.00 a resolution 0.8787 1 172
1vz8-assembly2.cif.gz_D ornithine acetyltransferase (orf6 gene product - clavulanic acid biosynthesis) from streptomyces clavuligerus (semet structure) 0.8653 6 372
ID Description Score Start End Superfamily
af_Q2G1H5_285_413_3.10.20.340 Alpha Beta;Roll;Ubiquitin-like (UB roll);ArgJ beta chain, C-terminal domain 0.942 259 372 3.10.20.340
af_P9WPZ3_1_199_3.60.70.12 Alpha Beta;4-Layer Sandwich;L-amino peptidase D-ALA esterase/amidase;L-amino peptidase D-ALA esterase/amidase 0.9366 1 177 3.60.70.12
3it6D01 Alpha Beta;2-Layer Sandwich;arginine biosynthesis bifunctional protein fold;arginine biosynthesis bifunctional protein suprefamily 0.9316 183 257 3.30.2330.10
3it4D02 Alpha Beta;Roll;Ubiquitin-like (UB roll);ArgJ beta chain, C-terminal domain 0.93 258 372 3.10.20.340
af_Q9ZUR7_336_468_3.10.20.340 Alpha Beta;Roll;Ubiquitin-like (UB roll);ArgJ beta chain, C-terminal domain 0.9211 259 372 3.10.20.340
ID Description Score Start End GO Terms
AF-A0A413RPF5-F1-model_v4 Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 0.9884 1 105 GO:0004042
GO:0004358
GO:0006526
GO:0006592
AF-A0A838G5J5-F1-model_v4 Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 0.987 1 156 GO:0004042
GO:0004358
GO:0006526
GO:0006592
AF-A0A838G5J5-F1-model_v4 Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 0.9807 1 156 GO:0004042
GO:0004358
GO:0006526
GO:0006592
AF-A0A2S8BE12-F1-model_v4 Arginine biosynthesis bifunctional protein ArgJ [Cleaved into: Arginine biosynthesis bifunctional protein ArgJ alpha chain; Arginine biosynthesis bifunctional protein ArgJ beta chain] [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (OATase) (Ornithine transacetylase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGSase)] 0.9704 2 155 GO:0004042
GO:0004358
GO:0005737
GO:0006526
GO:0006592
AF-A0A7X9CWF7-F1-model_v4 deleted 0.9703 1 113

Map