F306492

General Info

Members Datasets Scaffolds Average Seq Length
199 138 398 423

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2816332119|2816427674
Length 429
Sequence GTDSRTQVLDDLADRGLIAHTTDPDALRAAMAAGPITSYVGFDPTAPSLHMGNLLQLLTLRRLQLAGHNPIGLVGGATGLIGDPKESSERVLNPKDVVQQWVERVRGQVERFLDFDTALANPARIVNNYDWTKDLNTLDFLRDIGKHFPVNRMLGREVVKARLEQGISYTEFSYVLLQSLDYLELYRRYGCTLQTGGSDQWGNLTAGVELIRRTESGKAHALATPLVTKADGTKFGKTESGTVWLDRELTSPYAFYQFWFNTDDRDVMQLIRYYTFRSADEIAELEKATAERPFAREAQRVLAEDVTTLVHGRDETEQVQLAAKALFGQSELRSLSPDTLVAALREAPHVEVPAGQLPTVAELLVDTGLVASKSAARRTVAEGGAYLNNEKLSDPEYVPVGEDLLPGGALVLRRGKRSFAGVLTETAAG

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
7 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
8 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
9 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
10 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
17 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
20 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
25 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
31 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
32 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
45 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
46 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
49 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
50 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
51 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
52 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
53 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
54 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
55 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
56 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
57 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
63 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
64 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
65 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
66 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
67 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
68 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
69 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
70 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
71 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
72 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
73 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
76 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
80 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
81 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
82 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
86 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
87 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
88 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
89 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
104 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
105 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
106 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
107 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
108 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
109 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
110 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300049768 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_B_4_drought Metagenome Rhizosphere
113 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
115 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
116 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
119 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
120 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
121 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
122 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
123 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
124 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
125 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
126 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
127 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
128 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
129 2643221615 Nocardioides sp. Root224 Isolate Unclassified
130 2643221641 Nocardioides sp. Root122 Isolate Unclassified
131 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
132 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
133 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
134 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
135 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
136 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
137 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
138 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.47
Metatranscriptomes 0
Isolates 5.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.52
Nodule 0
Rhizoplane 7.04
Rhizosphere 81.91
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10062866 3300005327 Bacteria 3026
2 Ga0070683_100078441 3300005329 Bacteria 3090
3 Ga0070668_100078913 3300005347 Bacteria 2576
4 Ga0070659_100012168 3300005366 Bacteria 6377
5 Ga0070659_100043762 3300005366 Bacteria 3503
6 Ga0070714_100048660 3300005435 Bacteria 3606
7 Ga0070662_100019366 3300005457 Bacteria 4619
8 Ga0068852_100174939 3300005616 Bacteria 2015
9 Ga0068861_100025747 3300005719 Bacteria 4270
10 Ga0081455_10000117 3300005937 Bacteria 91308
11 Ga0081455_10000819 3300005937 Bacteria 40048
12 Ga0081455_10036026 3300005937 Bacteria 4412
13 Ga0081538_10004860 3300005981 Bacteria 12237
14 Ga0075365_10037317 3300006038 Bacteria 3154
15 Ga0075364_10009865 3300006051 Bacteria 5744
16 Ga0075432_10000747 3300006058 Bacteria 10087
17 Ga0075428_100076460 3300006844 Bacteria 3655
18 Ga0075428_100089263 3300006844 Bacteria 3362
19 Ga0075428_100118135 3300006844 Bacteria 2888
20 Ga0075428_100277640 3300006844 Bacteria 1803
21 Ga0075431_100009739 3300006847 Bacteria 9650
22 Ga0075431_100012384 3300006847 Bacteria 8608
23 Ga0075433_10003991 3300006852 Bacteria 11422
24 Ga0075433_10004634 3300006852 Bacteria 10729
25 Ga0075434_100005761 3300006871 Bacteria 11315
26 Ga0075434_100024785 3300006871 Bacteria 5865
27 Ga0075434_100257158 3300006871 Bacteria 1765
28 Ga0075429_100004658 3300006880 Bacteria 11802
29 Ga0075436_100050998 3300006914 Bacteria 2856
30 Ga0075435_100003227 3300007076 Bacteria 11037
31 Ga0075435_100058846 3300007076 Bacteria 3113
32 Ga0111539_10000158 3300009094 Bacteria 76916
33 Ga0111539_10012622 3300009094 Bacteria 10585
34 Ga0111539_10178707 3300009094 Bacteria 2479
35 Ga0105245_10006017 3300009098 Bacteria 10664
36 Ga0105245_10062154 3300009098 Bacteria 3369
37 Ga0114129_10003880 3300009147 Bacteria 21096
38 Ga0114129_10017101 3300009147 Bacteria 10327
39 Ga0105243_10004679 3300009148 Bacteria 10775
40 Ga0105243_10018374 3300009148 Bacteria 5295
41 Ga0105242_10041434 3300009176 Bacteria 3714
42 Ga0105238_10145755 3300009551 Bacteria 2344
43 Ga0105249_10007978 3300009553 Bacteria 9229
44 Ga0105239_10169857 3300010375 Bacteria 2438
45 Ga0157372_10051339 3300013307 Bacteria 4589
46 Ga0157372_10158290 3300013307 Bacteria 2617
47 Ga0157372_10283023 3300013307 Bacteria 1928
48 Ga0157375_10341017 3300013308 Bacteria 1664
49 Ga0163161_10097558 3300017792 Bacteria 2183
50 Ga0207642_10014635 3300025899 Bacteria 2900
51 Ga0207688_10064370 3300025901 Bacteria 2070
52 Ga0207647_10011450 3300025904 Bacteria 6220
53 Ga0207664_10010647 3300025929 Bacteria 6500
54 Ga0207690_10030577 3300025932 Bacteria 3437
55 Ga0207706_10008994 3300025933 Bacteria 9193
56 Ga0207686_10055744 3300025934 Bacteria 2481
57 Ga0207712_10115474 3300025961 Bacteria 2021
58 Ga0207712_10180184 3300025961 Bacteria 1659
59 Ga0207640_10068139 3300025981 Bacteria 2384
60 Ga0207677_10040950 3300026023 Bacteria 3059
61 Ga0207708_10076163 3300026075 Bacteria 2573
62 Ga0207675_100034755 3300026118 Bacteria 4701
63 Ga0207428_10005818 3300027907 Bacteria 11432
64 Ga0207428_10006063 3300027907 Bacteria 11175
65 Ga0316181_1253313 3300030744 Bacteria 2224
66 Ga0316182_1047703 3300030745 Bacteria 4512
67 Ga0307408_100008126 3300031548 Bacteria 6934
68 Ga0307408_100026641 3300031548 Bacteria 3974
69 Ga0307408_100078702 3300031548 Bacteria 2458
70 Ga0307405_10012156 3300031731 Bacteria 4544
71 Ga0307405_10035643 3300031731 Bacteria 2974
72 Ga0307413_10015166 3300031824 Bacteria 3941
73 Ga0307410_10000908 3300031852 Bacteria 12622
74 Ga0307410_10052849 3300031852 Bacteria 2746
75 Ga0307406_10000083 3300031901 Bacteria 52941
76 Ga0307406_10158838 3300031901 Bacteria 1622
77 Ga0307407_10006883 3300031903 Bacteria 5103
78 Ga0307407_10057424 3300031903 Bacteria 2257
79 Ga0307409_100018937 3300031995 Bacteria 4646
80 Ga0307409_100049206 3300031995 Bacteria 3212
81 Ga0307409_100098942 3300031995 Bacteria 2414
82 Ga0307409_100134459 3300031995 Bacteria 2119
83 Ga0307409_100168776 3300031995 Bacteria 1923
84 Ga0307416_100000105 3300032002 Bacteria 51970
85 Ga0307416_100004848 3300032002 Bacteria 8185
86 Ga0307416_100023950 3300032002 Bacteria 4443
87 Ga0307416_100046883 3300032002 Bacteria 3415
88 Ga0307416_100067085 3300032002 Bacteria 2957
89 Ga0307414_10016780 3300032004 Bacteria 4463
90 Ga0307411_10040807 3300032005 Bacteria 2947
91 Ga0307411_10068785 3300032005 Bacteria 2388
92 Ga0307411_10069740 3300032005 Bacteria 2375
93 Ga0307415_100003368 3300032126 Bacteria 8125
94 Ga0307415_100003810 3300032126 Bacteria 7731
95 Ga0307415_100009190 3300032126 Bacteria 5523
96 Ga0395900_0067353 3300037418 Bacteria 3678
97 Ga0395898_0006003 3300037466 Bacteria 13040
98 Ga0395905_0001026 3300037471 Bacteria 35609
99 Ga0395905_0072476 3300037471 Bacteria 3229
100 Ga0395905_0153402 3300037471 Bacteria 2167
101 Ga0395901_0243586 3300038443 Bacteria 1874
102 Ga0451791_0846982 3300041451 Bacteria 11622
103 Ga0451833_0271008 3300041491 Bacteria 3202
104 Ga0451837_0071947 3300041494 Bacteria 2078
105 Ga0451837_1786200 3300041494 Bacteria 3999
106 Ga0451853_3746849 3300041512 Bacteria 3887
107 Ga0439448_0011107 3300042005 Bacteria 2678
108 Ga0439455_0007431 3300042012 Bacteria 2317
109 Ga0439463_001655 3300042016 Bacteria 5875
110 Ga0439440_0012429 3300042993 Bacteria 1811
111 Ga0466972_0037873 3300044658 Bacteria 2356
112 Ga0466965_0022419 3300044683 Bacteria 3044
113 Ga0466965_0035328 3300044683 Bacteria 2448
114 Ga0466966_0033886 3300044684 Bacteria 3305
115 Ga0466964_0016114 3300044706 Bacteria 2848
116 Ga0466964_0035901 3300044706 Bacteria 1985
117 Ga0466970_0033822 3300044765 Bacteria 2703
118 Ga0466970_0058448 3300044765 Bacteria 2064
119 Ga0466957_0028106 3300044842 Bacteria 3347
120 Ga0466957_0033574 3300044842 Bacteria 3078
121 Ga0466957_0073413 3300044842 Bacteria 2120
122 Ga0466960_0033537 3300044901 Bacteria 2387
123 Ga0466960_0035610 3300044901 Bacteria 2327
124 Ga0466960_0111991 3300044901 Bacteria 1419
125 Ga0466958_0046554 3300045836 Bacteria 2617
126 Ga0466958_0073868 3300045836 Bacteria 2089
127 Ga0466967_0010767 3300045976 Bacteria 6877
128 Ga0466967_0026529 3300045976 Bacteria 4801
129 Ga0466967_0057099 3300045976 Bacteria 3445
130 Ga0496102_0046593 3300048905 Bacteria 3938
131 Ga0496102_0070870 3300048905 Bacteria 3201
132 Ga0496106_0039740 3300048909 Bacteria 3523
133 Ga0496107_0043034 3300048910 Bacteria 3244
134 Ga0496108_0002365 3300048911 Bacteria 15107
135 Ga0496109_0035580 3300048912 Bacteria 4493
136 Ga0496109_0083230 3300048912 Bacteria 2950
137 Ga0496109_0441247 3300048912 Bacteria 1230
138 Ga0496110_0026269 3300048913 Bacteria 4980
139 Ga0496110_0058162 3300048913 Bacteria 3405
140 Ga0496111_0053139 3300048914 Bacteria 2926
141 Ga0496111_0141602 3300048914 Bacteria 1782
142 Ga0496114_0055285 3300048917 Bacteria 3311
143 Ga0496122_0125717 3300048925 Bacteria 1642
144 Ga0496124_0026535 3300048927 Bacteria 5220
145 Ga0501031_0004208 3300049568 Bacteria 9299
146 Ga0501031_0040665 3300049568 Bacteria 3036
147 Ga0501032_0000427 3300049569 Bacteria 34916
148 Ga0501033_0000817 3300049570 Bacteria 28434
149 Ga0501034_0009177 3300049571 Bacteria 10377
150 Ga0501036_0000408 3300049572 Bacteria 30363
151 Ga0501036_0265362 3300049572 Bacteria 1438
152 Ga0501037_0000703 3300049573 Bacteria 25448
153 Ga0501038_0000146 3300049574 Bacteria 60336
154 Ga0501039_0000075 3300049575 Bacteria 74491
155 Ga0501040_0186273 3300049576 Bacteria 1472
156 Ga0501042_0282951 3300049578 Bacteria 1198
157 Ga0501043_0000882 3300049579 Bacteria 26619
158 Ga0501046_0000324 3300049580 Bacteria 47936
159 Ga0501047_0003234 3300049581 Bacteria 15443
160 Ga0501048_0003472 3300049582 Bacteria 11983
161 Ga0501067_0001393 3300049583 Bacteria 13109
162 Ga0501068_0101277 3300049584 Bacteria 1785
163 Ga0501069_0000137 3300049585 Bacteria 32103
164 Ga0501069_0064090 3300049585 Bacteria 2054
165 Ga0501070_0018132 3300049586 Bacteria 5904
166 Ga0501072_0103965 3300049588 Bacteria 2258
167 Ga0501073_0007655 3300049589 Bacteria 8017
168 Ga0501074_0001667 3300049590 Bacteria 15112
169 Ga0501080_0000531 3300049742 Bacteria 29982
170 Ga0501083_0013997 3300049744 Bacteria 5606
171 Ga0501271_000536 3300049768 Bacteria 3286
172 Ga0501035_0017753 3300049822 Bacteria 6562
173 Ga0501044_0001346 3300049823 Bacteria 28901
174 nmdc:mga0yw44_42135_c1 3300050492 Bacteria 2721
175 nmdc:mga06z11_46161_c1 3300050494 Bacteria 2206
176 nmdc:mga05p37_501369_c1 3300050507 Bacteria 1393
177 nmdc:mga05p37_9076_c1 3300050507 Bacteria 11754
178 nmdc:mga0qj67_49843_c1 3300050509 Bacteria 3310
179 nmdc:mga06r32_67227_c1 3300050510 Bacteria 3460
180 nmdc:mga08y16_5523_c1 3300050511 Bacteria 13234
181 nmdc:mga0n895_4481_c1 3300050512 Bacteria 11480
182 nmdc:mga0rr50_10842_c1 3300050513 Bacteria 5810
183 nmdc:mga0a205_101037_c1 3300050515 Bacteria 2783
184 nmdc:mga0a205_1359_c1 3300050515 Bacteria 20623
185 Ga0500641_0009384 3300053096 Bacteria 3519
186 Ga0500556_0007852 3300053104 Bacteria 3059
187 Ga0500593_000282 3300053117 Bacteria 20712
188 Ga0501084_0004341 3300054114 Bacteria 11553
189 2816427674 2816332119 Bacteria 8120218
190 2644090126 2643221615 Bacteria 5487866
191 2644230557 2643221641 Bacteria 4490190
192 2644319970 2643221657 Bacteria 5490246
193 2644458150 2643221681 Bacteria 3707866
194 2644537142 2643221697 Bacteria 3575694
195 2645719775 2643221961 Bacteria 3919167
196 2645726655 2643221962 Bacteria 3874254
197 2812352499 2811994878 Bacteria 5992952
198 2855391261 2855386786 Bacteria 4752232
199 2883823767 2883821847 Bacteria 5121194
200 Ga0070658_10062866
201 Ga0070683_100078441
202 Ga0070668_100078913
203 Ga0070659_100012168
204 Ga0070659_100043762
205 Ga0070714_100048660
206 Ga0070662_100019366
207 Ga0068852_100174939
208 Ga0068861_100025747
209 Ga0081455_10000117
210 Ga0081455_10000819
211 Ga0081455_10036026
212 Ga0081538_10004860
213 Ga0075365_10037317
214 Ga0075364_10009865
215 Ga0075432_10000747
216 Ga0075428_100076460
217 Ga0075428_100089263
218 Ga0075428_100118135
219 Ga0075428_100277640
220 Ga0075431_100009739
221 Ga0075431_100012384
222 Ga0075433_10003991
223 Ga0075433_10004634
224 Ga0075434_100005761
225 Ga0075434_100024785
226 Ga0075434_100257158
227 Ga0075429_100004658
228 Ga0075436_100050998
229 Ga0075435_100003227
230 Ga0075435_100058846
231 Ga0111539_10000158
232 Ga0111539_10012622
233 Ga0111539_10178707
234 Ga0105245_10006017
235 Ga0105245_10062154
236 Ga0114129_10003880
237 Ga0114129_10017101
238 Ga0105243_10004679
239 Ga0105243_10018374
240 Ga0105242_10041434
241 Ga0105238_10145755
242 Ga0105249_10007978
243 Ga0105239_10169857
244 Ga0157372_10051339
245 Ga0157372_10158290
246 Ga0157372_10283023
247 Ga0157375_10341017
248 Ga0163161_10097558
249 Ga0207642_10014635
250 Ga0207688_10064370
251 Ga0207647_10011450
252 Ga0207664_10010647
253 Ga0207690_10030577
254 Ga0207706_10008994
255 Ga0207686_10055744
256 Ga0207712_10115474
257 Ga0207712_10180184
258 Ga0207640_10068139
259 Ga0207677_10040950
260 Ga0207708_10076163
261 Ga0207675_100034755
262 Ga0207428_10005818
263 Ga0207428_10006063
264 Ga0316181_1253313
265 Ga0316182_1047703
266 Ga0307408_100008126
267 Ga0307408_100026641
268 Ga0307408_100078702
269 Ga0307405_10012156
270 Ga0307405_10035643
271 Ga0307413_10015166
272 Ga0307410_10000908
273 Ga0307410_10052849
274 Ga0307406_10000083
275 Ga0307406_10158838
276 Ga0307407_10006883
277 Ga0307407_10057424
278 Ga0307409_100018937
279 Ga0307409_100049206
280 Ga0307409_100098942
281 Ga0307409_100134459
282 Ga0307409_100168776
283 Ga0307416_100000105
284 Ga0307416_100004848
285 Ga0307416_100023950
286 Ga0307416_100046883
287 Ga0307416_100067085
288 Ga0307414_10016780
289 Ga0307411_10040807
290 Ga0307411_10068785
291 Ga0307411_10069740
292 Ga0307415_100003368
293 Ga0307415_100003810
294 Ga0307415_100009190
295 Ga0395900_0067353
296 Ga0395898_0006003
297 Ga0395905_0001026
298 Ga0395905_0072476
299 Ga0395905_0153402
300 Ga0395901_0243586
301 Ga0451791_0846982
302 Ga0451833_0271008
303 Ga0451837_0071947
304 Ga0451837_1786200
305 Ga0451853_3746849
306 Ga0439448_0011107
307 Ga0439455_0007431
308 Ga0439463_001655
309 Ga0439440_0012429
310 Ga0466972_0037873
311 Ga0466965_0022419
312 Ga0466965_0035328
313 Ga0466966_0033886
314 Ga0466964_0016114
315 Ga0466964_0035901
316 Ga0466970_0033822
317 Ga0466970_0058448
318 Ga0466957_0028106
319 Ga0466957_0033574
320 Ga0466957_0073413
321 Ga0466960_0033537
322 Ga0466960_0035610
323 Ga0466960_0111991
324 Ga0466958_0046554
325 Ga0466958_0073868
326 Ga0466967_0010767
327 Ga0466967_0026529
328 Ga0466967_0057099
329 Ga0496102_0046593
330 Ga0496102_0070870
331 Ga0496106_0039740
332 Ga0496107_0043034
333 Ga0496108_0002365
334 Ga0496109_0035580
335 Ga0496109_0083230
336 Ga0496109_0441247
337 Ga0496110_0026269
338 Ga0496110_0058162
339 Ga0496111_0053139
340 Ga0496111_0141602
341 Ga0496114_0055285
342 Ga0496122_0125717
343 Ga0496124_0026535
344 Ga0501031_0004208
345 Ga0501031_0040665
346 Ga0501032_0000427
347 Ga0501033_0000817
348 Ga0501034_0009177
349 Ga0501036_0000408
350 Ga0501036_0265362
351 Ga0501037_0000703
352 Ga0501038_0000146
353 Ga0501039_0000075
354 Ga0501040_0186273
355 Ga0501042_0282951
356 Ga0501043_0000882
357 Ga0501046_0000324
358 Ga0501047_0003234
359 Ga0501048_0003472
360 Ga0501067_0001393
361 Ga0501068_0101277
362 Ga0501069_0000137
363 Ga0501069_0064090
364 Ga0501070_0018132
365 Ga0501072_0103965
366 Ga0501073_0007655
367 Ga0501074_0001667
368 Ga0501080_0000531
369 Ga0501083_0013997
370 Ga0501271_000536
371 Ga0501035_0017753
372 Ga0501044_0001346
373 nmdc:mga0yw44_42135_c1
374 nmdc:mga06z11_46161_c1
375 nmdc:mga05p37_501369_c1
376 nmdc:mga05p37_9076_c1
377 nmdc:mga0qj67_49843_c1
378 nmdc:mga06r32_67227_c1
379 nmdc:mga08y16_5523_c1
380 nmdc:mga0n895_4481_c1
381 nmdc:mga0rr50_10842_c1
382 nmdc:mga0a205_101037_c1
383 nmdc:mga0a205_1359_c1
384 Ga0500641_0009384
385 Ga0500556_0007852
386 Ga0500593_000282
387 Ga0501084_0004341
388 2816427674
389 2644090126
390 2644230557
391 2644319970
392 2644458150
393 2644537142
394 2645719775
395 2645726655
396 2812352499
397 2855391261
398 2883823767

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00579

tRNA-synt_1b

tRNA synthetases class I (W and Y)

31

328

0.99

PF22421

SYY_C-terminal

Tyrosine--tRNA ligase SYY-like C-terminal domain

340

422

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1tyc-assembly1.cif.gz_A-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9263 7 317
1tya-assembly1.cif.gz_E-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9263 7 317
1tyd-assembly1.cif.gz_E-2 structure of tyrosyl-trna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate 0.9258 7 317
2ts1-assembly1.cif.gz_A structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate 0.9258 7 317
1tyb-assembly1.cif.gz_E-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9256 7 317
ID Description Score Start End Superfamily
2pidB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.971 241 317 1.10.240.10
2pidA02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9678 241 317 1.10.240.10
3zxiB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9611 241 317 1.10.240.10
af_P0AGJ9_333_424_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9525 331 420 3.10.290.10
2janC03 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9446 327 420 3.10.290.10
ID Description Score Start End GO Terms
AF-A0A3L7LTY5-F1-model_v4 Tyrosine--tRNA ligase 0.9725 345 420 GO:0003723
GO:0016874
AF-A0A378B2Y2-F1-model_v4 Tyrosyl-tRNA synthetase (EC 6.1.1.1) 0.9711 348 420 GO:0003723
GO:0004831
AF-A0A2N6U8R0-F1-model_v4 deleted 0.9707 245 376
AF-A0A2Z5QSQ7-F1-model_v4 deleted 0.9642 286 420
AF-A0A147B8V0-F1-model_v4 Tyrosine--tRNA ligase (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) 0.9575 177 337 GO:0004831
GO:0005524
GO:0005739
GO:0005829
GO:0006437

Map